	ENST_Nested	ENST_Host	geneChr_Nested	geneStart_Nested	geneEnd_Nested	SYMBOL_Nested	Strand_Nested	biotype_Nested	geneChr_Host	geneStart_Host	geneEnd_Host	SYMBOL_Host	Strand_Host	biotype_Host	Overlap_size	Strandness	pairid	seqnames	start	end	width	strand	V5	annotation	genic	Intergenic	Promoter	fiveUTR	threeUTR	Exon	Intron	downstream	distal_intergenic	exon_intron_number	exon_intron_total_number
10552	ENST00000603415.1_1	ENST00000460472.6_5	chr2	179413610	179415408	AC009948.1	+	lncRNA	chr2	179390715	179672150	TTN	-	protein_coding	1798	opposite	1006_ID	chr2	179413611	179415408	1798	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	165	191
10556	ENST00000603521.1_1	ENST00000460472.6_5	chr2	179443516	179445633	AC010680.2	+	lncRNA	chr2	179390715	179672150	TTN	-	protein_coding	2117	opposite	1125_ID	chr2	179443517	179445633	2117	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	145	191
10584	ENST00000604215.1_1	ENST00000460472.6_5	chr2	179441829	179442349	AC010680.3	+	lncRNA	chr2	179390715	179672150	TTN	-	protein_coding	520	opposite	1127_ID	chr2	179441830	179442349	520	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	151	191
10604	ENST00000604692.1_1	ENST00000460472.6_5	chr2	179405851	179406526	AC009948.2	+	lncRNA	chr2	179390715	179672150	TTN	-	protein_coding	675	opposite	1008_ID	chr2	179405852	179406526	675	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	178	191
10627	ENST00000605334.1_1	ENST00000460472.6_5	chr2	179481307	179481850	AC010680.4	+	lncRNA	chr2	179390715	179672150	TTN	-	protein_coding	543	opposite	1129_ID	chr2	179481308	179481850	543	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	83	191
7553	ENST00000552757.1_3	ENST00000454784.9_5	chr12	40789654	40837649	AC107023.1	-	lncRNA	chr12	40787196	40964562	MUC19	+	processed_transcript	47995	opposite	3678_ID	chr12	40789655	40837649	47995	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	173
1973	ENST00000384761.1	ENST00000454784.9_5	chr12	40947962	40948069	RNU6-713P	-	snRNA	chr12	40787196	40964562	MUC19	+	processed_transcript	107	opposite	11446_ID	chr12	40947963	40948069	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	156	172
3311	ENST00000412161.1_1	ENST00000341594.9_3	chr6	152701680	152702699	SYNE1-AS1	+	lncRNA	chr6	152442818	152958534	SYNE1	-	protein_coding	1019	opposite	12587_ID	chr6	152701681	152702699	1019	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	60	148
4969	ENST00000458194.1_1	ENST00000341594.9_3	chr6	152723532	152726101	AL049548.1	+	lncRNA	chr6	152442818	152958534	SYNE1	-	protein_coding	2569	opposite	4621_ID	chr6	152723533	152726101	2569	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	50	148
4641	ENST00000449282.2_1	ENST00000341594.9_3	chr6	152867064	152868119	NANOGP11	+	lncRNA	chr6	152442818	152958534	SYNE1	-	protein_coding	1055	opposite	9223_ID	chr6	152867065	152868119	1055	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	147
2299	ENST00000390201.1	ENST00000328333.12_3	chr3	48616334	48616410	MIR711	-	miRNA	chr3	48601505	48632700	COL7A1	-	protein_coding	76	same	9076_ID	chr3	48616335	48616410	76	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	62	118
10499	ENST00000602778.2_4	ENST00000570156.7_5	chr1	228483249	228490703	AL353593.2	-	lncRNA	chr1	228395744	228566577	OBSCN	+	protein_coding	7454	opposite	5240_ID	chr1	228483250	228490703	7454	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	49	116
12316	ENST00000653257.1_3	ENST00000570156.7_5	chr1	228544712	228556255	AL670729.3	-	lncRNA	chr1	228395744	228566577	OBSCN	+	protein_coding	11543	opposite	5880_ID	chr1	228544713	228556255	11543	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	91	116
12840	ENST00000664490.1_3	ENST00000570156.7_5	chr1	228425941	228463746	AL353593.1	-	lncRNA	chr1	228395744	228566577	OBSCN	+	protein_coding	37826	opposite	5239_ID	chr1	228425942	228463746	37805	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	116
12685	ENST00000661074.1_1	ENST00000570156.7_5	chr1	228517167	228518892	AL353593.3	+	lncRNA	chr1	228395744	228566577	OBSCN	+	protein_coding	1725	same	5241_ID	chr1	228517168	228518892	1725	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	67	115
2855	ENST00000408610.1	ENST00000344113.8_2	chr14	64561741	64561843	MIR548H1	-	miRNA	chr14	64319700	64693151	SYNE2	+	protein_coding	102	opposite	8899_ID	chr14	64561742	64561843	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	61	114
3898	ENST00000428391.1_3	ENST00000271588.9_2	chr1	186145945	186146434	AL133553.1	-	lncRNA	chr1	185703522	186160081	HMCN1	+	protein_coding	489	opposite	4869_ID	chr1	186145946	186146434	489	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	103	106
10209	ENST00000595853.1_3	ENST00000359596.8_3	chr19	39026156	39027768	AC067969.1	-	lncRNA	chr19	38924330	39078204	RYR1	+	protein_coding	1612	opposite	2383_ID	chr19	39026157	39027768	1612	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	82	106
10258	ENST00000597015.1_3	ENST00000359596.8_3	chr19	39017593	39019195	AC067969.2	-	lncRNA	chr19	38924330	39078204	RYR1	+	protein_coding	1602	opposite	2384_ID	chr19	39017594	39019195	1602	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	72	106
6438	ENST00000516587.1	ENST00000366574.7_3	chr1	237284106	237284409	RN7SKP195	+	misc_RNA	chr1	237205483	237997288	RYR2	+	protein_coding	303	same	9814_ID	chr1	237284107	237284409	303	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	104
9807	ENST00000584884.1	ENST00000366574.7_3	chr1	237634418	237634491	MIR4428	+	miRNA	chr1	237205483	237997288	RYR2	+	protein_coding	73	same	8530_ID	chr1	237634419	237634491	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	104
7831	ENST00000560268.2_3	ENST00000415757.7_1	chr15	34150802	34157026	AC010809.1	-	lncRNA	chr15	33603162	34158302	RYR3	+	protein_coding	6224	opposite	1148_ID	chr15	34150803	34157026	6224	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	99	103
7837	ENST00000560404.2_3	ENST00000415757.7_1	chr15	34143985	34149010	AC010809.2	-	lncRNA	chr15	33603162	34158302	RYR3	+	protein_coding	5025	opposite	1149_ID	chr15	34143986	34149010	5025	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	94	103
4274	ENST00000438877.1_1	ENST00000369393.8_4	chr6	90383187	90385502	AL096678.1	+	lncRNA	chr6	90352216	90529513	MDN1	-	protein_coding	2315	opposite	4682_ID	chr6	90383188	90385502	2315	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	78	102
11554	ENST00000621310.1_1	ENST00000415757.7_1	chr15	34142738	34143379	AC010809.3	-	lncRNA	chr15	33603162	34158302	RYR3	+	protein_coding	641	opposite	1150_ID	chr15	34142739	34143379	641	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	93	102
256	ENST00000289890.7_3	ENST00000361689.7_2	chr1	39715509	39723321	AL442071.1	-	lncRNA	chr1	39547088	39952659	MACF1	+	protein_coding	7812	opposite	5608_ID	chr1	39715510	39723321	7812	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	94
13082	ENST00000669616.1_4	ENST00000361689.7_2	chr1	39692341	39704292	AL442071.2	-	lncRNA	chr1	39547088	39952659	MACF1	+	protein_coding	11951	opposite	5609_ID	chr1	39692342	39704292	11951	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	94
1676	ENST00000383927.1	ENST00000361689.7_2	chr1	39586611	39586715	RNU6-608P	-	snRNA	chr1	39547088	39952659	MACF1	+	protein_coding	104	opposite	11377_ID	chr1	39586612	39586715	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	93
3497	ENST00000416948.1_3	ENST00000327475.11_3	chr6	38890804	38920875	DNAH8-AS1	-	lncRNA	chr6	38683086	38998568	DNAH8	+	protein_coding	30071	opposite	6825_ID	chr6	38890805	38920875	30071	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	72	93
5268	ENST00000468411.2	ENST00000327475.11_3	chr6	38711861	38712159	RN7SL465P	+	misc_RNA	chr6	38683086	38998568	DNAH8	+	protein_coding	298	same	10206_ID	chr6	38711862	38712159	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	92
6305	ENST00000516206.1	ENST00000389484.8_3	chr2	141924825	141924926	RNU6-904P	-	snRNA	chr2	140988991	142888585	LRP1B	-	protein_coding	101	same	11600_ID	chr2	141924826	141924926	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	90
8610	ENST00000578083.1	ENST00000389484.8_3	chr2	142754945	142755056	AC012003.1	+	miRNA	chr2	140988991	142888585	LRP1B	-	protein_coding	111	opposite	1319_ID	chr2	142754946	142755056	111	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	90
9403	ENST00000582639.1	ENST00000389484.8_3	chr2	142396412	142396532	AC012353.1	+	miRNA	chr2	140988991	142888585	LRP1B	-	protein_coding	120	opposite	1365_ID	chr2	142396413	142396532	120	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	90
7642	ENST00000555461.1_3	ENST00000243077.8_2	chr12	57538402	57541402	LRP1-AS	-	lncRNA	chr12	57522265	57607144	LRP1	+	protein_coding	3000	opposite	7853_ID	chr12	57538403	57541402	3000	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	89
12074	ENST00000648543.1_3	ENST00000405460.9_4	chr5	90428119	90438287	AC074132.1	-	lncRNA	chr5	89854613	90460254	ADGRV1	+	protein_coding	10168	opposite	2573_ID	chr5	90428120	90438287	10168	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	87	89
12116	ENST00000649070.1_3	ENST00000375735.7_4	chr11	103122945	103164434	AP002961.1	-	lncRNA	chr11	102980154	103350591	DYNC2H1	+	protein_coding	41489	opposite	6222_ID	chr11	103122946	103164434	41489	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	66	89
2778	ENST00000408438.1	ENST00000243077.8_2	chr12	57588286	57588359	MIR1228	+	miRNA	chr12	57522265	57607144	LRP1	+	protein_coding	73	same	7987_ID	chr12	57588287	57588359	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	49	88
12536	ENST00000658178.1_1	ENST00000314191.7_5	chr8	48853985	48856230	AC021236.1	+	lncRNA	chr8	48685671	48872696	PRKDC	-	protein_coding	2245	opposite	1784_ID	chr8	48853986	48856230	2245	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	87
8013	ENST00000563968.5_1	ENST00000393567.7_7	chr16	71114768	71127570	AC138625.2	+	lncRNA	chr16	70835986	71264625	HYDIN	-	protein_coding	12802	opposite	4189_ID	chr16	71114769	71127570	12802	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	86
2284	ENST00000390136.2	ENST00000314191.7_5	chr8	48802618	48802691	AC103686.1	+	miRNA	chr8	48685671	48872696	PRKDC	-	protein_coding	73	opposite	3454_ID	chr8	48802619	48802691	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	32	85
2937	ENST00000408798.1	ENST00000393567.7_7	chr16	70886600	70886717	RNU6ATAC25P	+	snRNA	chr16	70835986	71264625	HYDIN	-	protein_coding	117	opposite	11671_ID	chr16	70886601	70886717	117	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	73	85
3262	ENST00000411384.1	ENST00000393567.7_7	chr16	70907086	70907216	AC027281.1	-	miRNA	chr16	70835986	71264625	HYDIN	-	protein_coding	130	same	2205_ID	chr16	70907087	70907216	130	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	64	85
8191	ENST00000567556.1_1	ENST00000393567.7_7	chr16	71147254	71147903	AC138625.1	+	lncRNA	chr16	70835986	71264625	HYDIN	-	protein_coding	649	opposite	4188_ID	chr16	71147255	71147903	649	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	85
2244	ENST00000385277.1	ENST00000262854.11_7	chrX	53584152	53584235	MIRLET7F2	-	miRNA	chrX	53559056	53713664	HUWE1	-	protein_coding	83	same	9137_ID	chrX	53584153	53584235	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	61	84
10737	ENST00000606724.1	ENST00000262854.11_7	chrX	53583183	53583302	MIR98	-	miRNA	chrX	53559056	53713664	HUWE1	-	protein_coding	119	same	9123_ID	chrX	53583184	53583302	119	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	61	84
121721	ENST00000650148.1_1	ENST00000249837.7_4	chr15	62153307	62186363	AC009554.2	+	lncRNA	chr15	62144587	62352672	VPS13C	-	protein_coding	33056	opposite	972_ID	chr15	62153308	62186363	33056	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	65	83
39141	ENST00000428716.2_3	ENST00000544440.7_6	chr13	77654645	77655325	MYCBP2-AS2	-	lncRNA	chr13	77618791	77901229	MYCBP2	-	protein_coding	680	same	9193_ID	chr13	77654646	77655325	680	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	65	82
97361	ENST00000584412.1	ENST00000249837.7_4	chr15	62206623	62206875	RN7SL613P	+	misc_RNA	chr15	62144587	62352672	VPS13C	-	protein_coding	252	opposite	10305_ID	chr15	62206624	62206875	252	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	59	82
10086	ENST00000591373.2_1	ENST00000389840.7_5	chr17	76480991	76495428	DNAH17-AS1	+	lncRNA	chr17	76419777	76573478	DNAH17	-	protein_coding	18175	opposite	6824_ID	chr17	76480992	76495428	14437	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	37	81
4912	ENST00000456721.2_2	ENST00000252999.7_3	chr20	60928050	60931525	LAMA5-AS1	+	lncRNA	chr20	60884120	60942368	LAMA5	-	protein_coding	3486	opposite	7504_ID	chr20	60928051	60931525	3475	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	80
5629	ENST00000492744.2	ENST00000389840.7_5	chr17	76528874	76529137	RN7SL454P	-	misc_RNA	chr17	76419777	76573478	DNAH17	-	protein_coding	263	same	10194_ID	chr17	76528875	76529137	263	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	80
8536	ENST00000577688.1	ENST00000252999.7_3	chr20	60907542	60907613	MIR4758	-	miRNA	chr20	60884120	60942368	LAMA5	-	protein_coding	71	same	8745_ID	chr20	60907543	60907613	71	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	27	80
1780	ENST00000384210.1	ENST00000398571.7_5	chr2	61644378	61644513	SNORA70B	-	snoRNA	chr2	61414597	61698222	USP34	-	protein_coding	135	same	12196_ID	chr2	61644379	61644513	135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	79
5782	ENST00000503244.2_3	ENST00000265104.4_3	chr5	13860411	13901145	AC016576.1	+	lncRNA	chr5	13690439	13944652	DNAH5	-	protein_coding	40734	opposite	1537_ID	chr5	13860412	13901145	40734	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	79
10996	ENST00000609422.1_1	ENST00000398571.7_5	chr2	61427113	61427904	AC016747.3	+	lncRNA	chr2	61414597	61698222	USP34	-	protein_coding	791	opposite	1563_ID	chr2	61427114	61427904	791	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	75	79
2774	ENST00000408421.1	ENST00000357033.9_4	chrX	32659590	32659676	MIR548F5	-	miRNA	chrX	31137338	33229666	DMD	-	protein_coding	86	same	8898_ID	chrX	32659591	32659676	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	78
4308	ENST00000439592.1_1	ENST00000357033.9_4	chrX	32773056	32774517	DMD-AS3	+	lncRNA	chrX	31137338	33229666	DMD	-	protein_coding	1461	opposite	6820_ID	chrX	32773057	32774517	1461	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	78
6140	ENST00000514254.3_4	ENST00000409039.8_5	chr12	124410007	124419531	DNAH10OS	-	lncRNA	chr12	124246734	124420267	DNAH10	+	protein_coding	9524	opposite	6823_ID	chr12	124410008	124419531	9524	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	68	78
6619	ENST00000517094.1	ENST00000357033.9_4	chrX	31366308	31366414	RNU6-894P	+	snRNA	chrX	31137338	33229666	DMD	-	protein_coding	106	opposite	11589_ID	chrX	31366309	31366414	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	61	78
7788	ENST00000559303.2_1	ENST00000443617.7_4	chr15	63967344	64005957	AC073167.1	+	lncRNA	chr15	63900816	64126147	HERC1	-	protein_coding	38613	opposite	2508_ID	chr15	63967345	64005957	38613	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	23	78
8678	ENST00000578518.1	ENST00000357033.9_4	chrX	32601772	32601869	MIR3915	-	miRNA	chrX	31137338	33229666	DMD	-	protein_coding	97	same	8420_ID	chrX	32601773	32601869	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	78
12086	ENST00000648644.1_1	ENST00000357033.9_4	chrX	31429149	31431818	AC079177.1	+	lncRNA	chrX	31137338	33229666	DMD	-	protein_coding	2669	opposite	2626_ID	chrX	31429150	31431818	2669	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	60	78
10527	ENST00000602952.1	ENST00000409039.8_5	chr12	124410007	124410630	RP11-380L11.4	-	antisense	chr12	124246734	124420267	DNAH10	+	protein_coding	623	opposite	11895_ID	chr12	124410008	124410630	623	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	67	77
7440	ENST00000547401.1_1	ENST00000377560.9_4	chr12	112694603	112696895	AC004217.1	+	lncRNA	chr12	112597993	112820243	HECTD4	-	protein_coding	2292	opposite	110_ID	chr12	112694604	112696895	2292	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	76
1206	ENST00000364558.1	ENST00000377560.9_4	chr12	112704880	112705198	RN7SKP71	+	misc_RNA	chr12	112597993	112820243	HECTD4	-	protein_coding	318	opposite	9915_ID	chr12	112704881	112705198	318	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	75
4868	ENST00000455572.1_3	ENST00000421745.6_1	chr2	32602698	32604667	BIRC6-AS1	-	lncRNA	chr2	32582095	32843966	BIRC6	+	protein_coding	1969	opposite	6418_ID	chr2	32602699	32604667	1969	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	74
2073	ENST00000384920.1	ENST00000421745.6_1	chr2	32757219	32757313	MIR558	+	miRNA	chr2	32582095	32843966	BIRC6	+	protein_coding	94	same	8933_ID	chr2	32757220	32757313	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	61	73
2705	ENST00000408256.1	ENST00000512123.4_2	chr4	79109489	79109577	AC093897.1	+	miRNA	chr4	78978476	79465423	FRAS1	+	protein_coding	88	same	3260_ID	chr4	79109490	79109577	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	73
4008	ENST00000431309.1_3	ENST00000367545.7_1	chr6	144632834	144654437	AL024474.2	-	lncRNA	chr6	144612964	145174170	UTRN	+	protein_coding	21603	opposite	4499_ID	chr6	144632835	144654437	21603	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	73
11093	ENST00000610331.1_1	ENST00000421745.6_1	chr2	32746993	32748614	AL133243.2	+	lncRNA	chr2	32582095	32843966	BIRC6	+	protein_coding	1621	same	4827_ID	chr2	32746994	32748614	1621	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	57	73
11263	ENST00000614487.1_1	ENST00000421745.6_1	chr2	32773741	32774107	AL133243.1	+	lncRNA	chr2	32582095	32843966	BIRC6	+	protein_coding	366	same	4826_ID	chr2	32773742	32774107	366	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	64	73
11386	ENST00000617415.1_1	ENST00000421745.6_1	chr2	32751570	32754574	AL133243.3	+	lncRNA	chr2	32582095	32843966	BIRC6	+	protein_coding	3004	same	4828_ID	chr2	32751571	32754574	3004	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	59	73
3425	ENST00000414995.1_1	ENST00000307340.8_5	chr1	216059923	216074806	AL358452.1	+	lncRNA	chr1	215796232	216596790	USH2A	-	protein_coding	14883	opposite	5455_ID	chr1	216059924	216074806	14883	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	39	72
3642	ENST00000420867.1_1	ENST00000307340.8_5	chr1	216367392	216377708	USH2A-AS1	+	lncRNA	chr1	215796232	216596790	USH2A	-	protein_coding	10316	opposite	12853_ID	chr1	216367393	216377708	10316	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	72
4537	ENST00000446411.5_1	ENST00000307340.8_5	chr1	216245806	216260259	USH2A-AS2	+	lncRNA	chr1	215796232	216596790	USH2A	-	protein_coding	14453	opposite	12854_ID	chr1	216245807	216260259	14453	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	24	72
2511	ENST00000396885.2_3	ENST00000562955.2_3	chr1	43913446	43914315	SZT2-AS1	-	lncRNA	chr1	43855566	43919918	SZT2	+	protein_coding	869	opposite	12591_ID	chr1	43913447	43914315	869	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	67	71
9482	ENST00000583037.5_3	ENST00000562955.2_3	chr1	43916673	43919660	HYI	-	protein_coding	chr1	43855566	43919918	SZT2	+	protein_coding	2987	opposite	7319_ID	chr1	43916674	43919660	2987	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	71	71
12781	ENST00000663185.1_3	ENST00000355540.7_2	chr7	98587489	98591401	AC004893.2	-	lncRNA	chr7	98476112	98610866	TRRAP	+	protein_coding	3912	opposite	192_ID	chr7	98587490	98591401	3912	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	62	71
2532	ENST00000398786.2_3	ENST00000224721.12_5	chr10	73471466	73497581	C10orf105	-	protein_coding	chr10	73156676	73575704	CDH23	+	protein_coding	26124	opposite	6464_ID	chr10	73471467	73497581	26115	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	28	70
2891	ENST00000408683.1	ENST00000297405.10_5	chr8	114419755	114419823	AC107890.1	-	miRNA	chr8	113235156	114449168	CSMD3	-	protein_coding	68	same	3700_ID	chr8	114419756	114419823	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	70
3919	ENST00000428918.1_3	ENST00000224721.12_5	chr10	73267909	73271630	CDH23-AS1	-	lncRNA	chr10	73156676	73575704	CDH23	+	protein_coding	3721	opposite	6601_ID	chr10	73267910	73271630	3721	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	70
5083	ENST00000459295.1	ENST00000297405.10_5	chr8	113655721	113655812	MIR2053	+	miRNA	chr8	113235156	114449168	CSMD3	-	protein_coding	91	opposite	8168_ID	chr8	113655722	113655812	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	70
9409	ENST00000582661.1	ENST00000355540.7_2	chr7	98479272	98479352	MIR3609	+	miRNA	chr7	98476112	98610866	TRRAP	+	protein_coding	80	same	8341_ID	chr7	98479273	98479352	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	70
12023	ENST00000647677.1_1	ENST00000635120.2_8	chr8	3266654	3284109	AC026991.2	+	lncRNA	chr8	2792882	4852436	CSMD1	-	protein_coding	17455	opposite	2185_ID	chr8	3266655	3284109	17455	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	70
12967	ENST00000667090.1_1	ENST00000297405.10_5	chr8	114444452	114445358	AC055788.2	+	lncRNA	chr8	113235156	114449168	CSMD3	-	protein_coding	906	opposite	2334_ID	chr8	114444453	114445358	906	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	70
13036	ENST00000668818.1_1	ENST00000297405.10_5	chr8	113458803	113470222	AC024996.1	+	lncRNA	chr8	113235156	114449168	CSMD3	-	protein_coding	29112	opposite	2042_ID	chr8	113458804	113470222	11419	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	32	70
2493	ENST00000394957.8_4	ENST00000224721.12_5	chr10	73507312	73533277	VSIR	-	protein_coding	chr10	73156676	73575704	CDH23	+	protein_coding	25965	opposite	12896_ID	chr10	73507313	73533277	25965	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	38	69
5087	ENST00000459326.1	ENST00000620676.6_7	chr1	12567299	12567451	SNORA59A	+	snoRNA	chr1	12290086	12572099	VPS13D	+	protein_coding	152	same	12186_ID	chr1	12567300	12567451	152	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	69	69
6791	ENST00000519684.5_1	ENST00000373388.6_4	chr1	34326075	34330392	HMGB4	+	protein_coding	chr1	33979598	34631443	CSMD2	-	protein_coding	4317	opposite	7246_ID	chr1	34326076	34330392	4317	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	69
6824	ENST00000520815.1_3	ENST00000635120.2_8	chr8	3230874	3232748	AC026991.1	-	lncRNA	chr8	2792882	4852436	CSMD1	-	protein_coding	1874	same	2184_ID	chr8	3230875	3232748	1874	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	69
7505	ENST00000550175.1_3	ENST00000388887.7_2	chr12	104062352	104063184	AC025265.3	-	lncRNA	chr12	103981050	104160497	STAB2	+	protein_coding	832	opposite	2070_ID	chr12	104062353	104063184	832	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	69
7532	ENST00000551905.1_3	ENST00000388887.7_2	chr12	104048557	104051773	AC025265.2	-	lncRNA	chr12	103981050	104160497	STAB2	+	protein_coding	3216	opposite	2069_ID	chr12	104048558	104051773	3216	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	69
8861	ENST00000579621.2_4	ENST00000262442.9_4	chr17	11778043	11784987	AC005209.1	-	lncRNA	chr17	11501786	11873065	DNAH9	+	protein_coding	6944	opposite	250_ID	chr17	11778044	11784987	6944	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	53	69
9181	ENST00000581372.1	ENST00000635120.2_8	chr8	4250343	4250612	RN7SL872P	+	misc_RNA	chr8	2792882	4852436	CSMD1	-	protein_coding	269	opposite	10496_ID	chr8	4250344	4250612	269	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	69
12020	ENST00000647648.1_1	ENST00000635120.2_8	chr8	4490586	4493176	AC022068.1	+	lncRNA	chr8	2792882	4852436	CSMD1	-	protein_coding	2590	opposite	1819_ID	chr8	4490587	4493176	2590	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	69
12322	ENST00000653453.1_1	ENST00000635120.2_8	chr8	4353913	4360914	AC010941.1	+	lncRNA	chr8	2792882	4852436	CSMD1	-	protein_coding	7001	opposite	1162_ID	chr8	4353914	4360914	7001	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	69
12744	ENST00000662460.1_1	ENST00000373388.6_4	chr1	34335782	34359325	CSMD2-AS1	+	lncRNA	chr1	33979598	34631443	CSMD2	-	protein_coding	24774	opposite	6719_ID	chr1	34335783	34359325	23543	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	69
12937	ENST00000666533.1_1	ENST00000635120.2_8	chr8	4174909	4186549	AC027251.1	+	lncRNA	chr8	2792882	4852436	CSMD1	-	protein_coding	11640	opposite	2200_ID	chr8	4174910	4186549	11640	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	69
6008	ENST00000510449.2_2	ENST00000295888.9_3	chr4	85717766	85731556	WDFY3-AS1	+	lncRNA	chr4	85590749	85887843	WDFY3	-	protein_coding	13790	opposite	12907_ID	chr4	85717767	85731556	13790	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	68
9825	ENST00000584990.1	ENST00000262442.9_4	chr17	11644692	11644781	AC005701.1	-	miRNA	chr17	11501786	11873065	DNAH9	+	protein_coding	89	opposite	334_ID	chr17	11644693	11644781	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	29	68
11361	ENST00000616832.1_1	ENST00000582970.5_2	chr17	78307640	78308166	AC124319.2	-	lncRNA	chr17	78234666	78372586	RNF213	+	protein_coding	526	opposite	4011_ID	chr17	78307641	78308166	526	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	22	68
1253	ENST00000364772.1	ENST00000471714.6_4	chr3	100671470	100671577	RNU6-865P	+	snRNA	chr3	100467999	100712265	ABI3BP	-	protein_coding	107	opposite	11570_ID	chr3	100671471	100671577	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	67
5176	ENST00000462094.2	ENST00000295888.9_3	chr4	85608880	85609171	RN7SL552P	-	misc_RNA	chr4	85590749	85887843	WDFY3	-	protein_coding	291	same	10267_ID	chr4	85608881	85609171	291	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	62	67
6324	ENST00000516253.1	ENST00000295888.9_3	chr4	85807538	85807639	RNU6-469P	-	snRNA	chr4	85590749	85887843	WDFY3	-	protein_coding	101	same	11264_ID	chr4	85807539	85807639	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	67
8350	ENST00000572950.1_1	ENST00000598234.6_5	chr16	11559115	11567030	AC099489.3	+	lncRNA	chr16	11465871	11621101	AC099489.1	-	protein_coding	7915	opposite	3362_ID	chr16	11559116	11567030	7915	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	21	67
8431	ENST00000576808.1_1	ENST00000582970.5_2	chr17	78289450	78290433	AC124319.1	+	lncRNA	chr17	78234666	78372586	RNF213	+	protein_coding	983	same	4010_ID	chr17	78289451	78290433	983	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	67
9467	ENST00000582950.1	ENST00000320955.8_4	chr15	42158692	42158749	MIR4310	-	miRNA	chr15	42140343	42186251	SPTBN5	-	protein_coding	57	same	8506_ID	chr15	42158693	42158749	57	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	36	67
10110	ENST00000592332.1_1	ENST00000264828.4_4	chr19	10106672	10107839	AC008742.1	+	lncRNA	chr19	10070236	10121180	COL5A3	-	protein_coding	1167	opposite	796_ID	chr19	10106673	10107839	1167	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	67
2862	ENST00000408630.2	ENST00000371117.8_4	chr6	51926412	51926504	AL590391.1	-	miRNA	chr6	51480096	51952411	PKHD1	-	protein_coding	92	same	5764_ID	chr6	51926413	51926504	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	66
5624	ENST00000492489.2	ENST00000371117.8_4	chr6	51840457	51840755	RN7SL580P	+	misc_RNA	chr6	51480096	51952411	PKHD1	-	protein_coding	298	opposite	10283_ID	chr6	51840458	51840755	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	35	66
12927	ENST00000666389.1_4	ENST00000371817.8_2	chr9	137662496	137667517	AL645768.1	-	lncRNA	chr9	137533648	137736689	COL5A1	+	protein_coding	5021	opposite	5865_ID	chr9	137662497	137667517	5021	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	26	66
1485	ENST00000371813.5_4	ENST00000371817.8_2	chr9	137541230	137544919	COL5A1-AS1	-	lncRNA	chr9	137533648	137736689	COL5A1	+	protein_coding	3689	opposite	6690_ID	chr9	137541231	137544919	3689	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	65
4411	ENST00000442449.1_3	ENST00000421865.3_3	chr6	129800759	129802555	AL356124.2	-	lncRNA	chr6	129204282	129837711	LAMA2	+	protein_coding	1796	opposite	5371_ID	chr6	129800760	129802555	1796	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	55	65
8615	ENST00000578135.1	ENST00000598234.6_5	chr16	11571887	11572132	RN7SL522P	+	misc_RNA	chr16	11465871	11621101	AC099489.1	-	protein_coding	245	opposite	10249_ID	chr16	11571888	11572132	245	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	65
11272	ENST00000614738.1_1	ENST00000316623.10_4	chr15	48821176	48821925	AC022467.1	-	lncRNA	chr15	48700509	48937906	FBN1	-	protein_coding	749	same	1869_ID	chr15	48821177	48821925	749	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	65
12333	ENST00000653789.1_3	ENST00000316623.10_4	chr15	48816504	48818248	AC022467.2	+	lncRNA	chr15	48700509	48937906	FBN1	-	protein_coding	1744	opposite	1870_ID	chr15	48816505	48818248	1744	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	65
6490	ENST00000516745.1	ENST00000421865.3_3	chr6	129758019	129758125	RNU6-861P	-	snRNA	chr6	129204282	129837711	LAMA2	+	protein_coding	106	opposite	11566_ID	chr6	129758020	129758125	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	41	64
30921	ENST00000410454.1	ENST00000428762.6_6	chr7	103124654	103124986	RN7SKP86	-	misc_RNA	chr7	103112235	103630105	RELN	-	protein_coding	332	same	9929_ID	chr7	103124655	103124986	332	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	61	64
1711	ENST00000384006.1	ENST00000378653.8_9	chrX	36040055	36040162	RNU6-641P	-	snRNA	chrX	35937850	36403432	CFAP47	+	protein_coding	107	opposite	11400_ID	chrX	36040056	36040162	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	63
6208	ENST00000515913.1	ENST00000358350.9_4	chr4	48576469	48576537	RNU5E-3P	-	snRNA	chr4	48499373	48782296	FRYL	-	protein_coding	68	same	10747_ID	chr4	48576470	48576537	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	63
9198	ENST00000581502.1_1	ENST00000389658.4_4	chr18	7076815	7080122	AP005062.1	+	lncRNA	chr18	6941740	7117796	LAMA1	-	protein_coding	3307	opposite	6283_ID	chr18	7076816	7080122	3307	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	63
9780	ENST00000584722.1_1	ENST00000389658.4_4	chr18	6954675	6957418	AP002409.1	+	lncRNA	chr18	6941740	7117796	LAMA1	-	protein_coding	2743	opposite	6186_ID	chr18	6954676	6957418	2743	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	56	63
3975	ENST00000430438.1_3	ENST00000325239.11_1	chr10	50091999	50143258	AC060234.3	-	lncRNA	chr10	49892920	50191001	WDFY4	+	protein_coding	51259	opposite	2344_ID	chr10	50092000	50143258	51259	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	44	62
8401	ENST00000575612.1_1	ENST00000261383.3_3	chr16	21132078	21141429	AC008551.1	+	lncRNA	chr16	20944432	21170762	DNAH3	-	protein_coding	9351	opposite	745_ID	chr16	21132079	21141429	9351	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	62
9725	ENST00000584392.1	ENST00000389658.4_4	chr18	6972706	6972988	RN7SL537P	-	misc_RNA	chr18	6941740	7117796	LAMA1	-	protein_coding	282	same	10259_ID	chr18	6972707	6972988	282	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	47	62
10218	ENST00000596081.1	ENST00000278616.8_1	chr11	108130254	108136480	AP001925.1	-	protein_coding	chr11	108093558	108239826	ATM	+	protein_coding	6226	opposite	6169_ID	chr11	108130255	108136480	6226	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	62
1514	ENST00000374160.7_3	ENST00000325239.11_1	chr10	50117527	50122277	LRRC18	-	protein_coding	chr10	49892920	50191001	WDFY4	+	protein_coding	4750	opposite	7856_ID	chr10	50117528	50122277	4750	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	47	61
2146	ENST00000385069.1	ENST00000357162.6_2	chr8	100548863	100548958	MIR599	-	miRNA	chr8	100025493	100889808	VPS13B	+	protein_coding	95	opposite	9001_ID	chr8	100548864	100548958	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	61
2585	ENST00000401250.1	ENST00000357162.6_2	chr8	100549013	100549089	MIR875	-	miRNA	chr8	100025493	100889808	VPS13B	+	protein_coding	76	opposite	9094_ID	chr8	100549014	100549089	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	61
3744	ENST00000423256.1_1	ENST00000325239.11_1	chr10	50086066	50086694	AC035139.1	+	lncRNA	chr10	49892920	50191001	WDFY4	+	protein_coding	628	same	2267_ID	chr10	50086067	50086694	628	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	43	61
3899	ENST00000428419.1_3	ENST00000645780.1_1	chr13	32599450	32605776	FRY-AS1	-	lncRNA	chr13	32420849	32873242	FRY	+	protein_coding	6326	opposite	7084_ID	chr13	32599451	32605776	6326	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	61
5626	ENST00000492591.2	ENST00000357162.6_2	chr8	100626013	100626306	RN7SL350P	-	misc_RNA	chr8	100025493	100889808	VPS13B	+	protein_coding	293	opposite	10123_ID	chr8	100626014	100626306	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	33	61
6827	ENST00000520844.1_3	ENST00000357162.6_2	chr8	100103965	100106288	AC107909.2	-	lncRNA	chr8	100025493	100889808	VPS13B	+	protein_coding	2323	opposite	3703_ID	chr8	100103966	100106288	2323	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	61
6900	ENST00000523226.1_2	ENST00000357162.6_2	chr8	100131579	100132809	AC107909.1	+	lncRNA	chr8	100025493	100889808	VPS13B	+	protein_coding	1230	same	3702_ID	chr8	100131580	100132809	1230	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	61
6914	ENST00000523658.1_3	ENST00000357162.6_2	chr8	100808842	100811415	AC018442.2	-	lncRNA	chr8	100025493	100889808	VPS13B	+	protein_coding	2573	opposite	1618_ID	chr8	100808843	100811415	2573	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	43	61
12827	ENST00000664118.1_3	ENST00000325239.11_1	chr10	50043585	50053990	AC035139.2	-	lncRNA	chr10	49892920	50191001	WDFY4	+	protein_coding	10405	opposite	2268_ID	chr10	50043586	50053990	10405	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	39	61
2099	ENST00000384993.1	ENST00000356083.8_2	chr9	116971713	116971809	MIR455	+	miRNA	chr9	116917816	117074791	COL27A1	+	protein_coding	96	same	8617_ID	chr9	116971714	116971809	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	60
3421	ENST00000414938.1_3	ENST00000302640.12_3	chr3	4790875	4793274	EGOT	-	lncRNA	chr3	4535031	4889524	ITPR1	+	protein_coding	2399	opposite	6880_ID	chr3	4790876	4793274	2399	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	43	60
6555	ENST00000516942.1	ENST00000360013.7_3	chr3	124126537	124126630	RNU6-143P	+	snRNA	chr3	123813557	124440035	KALRN	+	protein_coding	93	same	11030_ID	chr3	124126538	124126630	93	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	59
9686	ENST00000584173.1	ENST00000360013.7_3	chr3	124415784	124415883	AC080008.1	-	miRNA	chr3	123813557	124440035	KALRN	+	protein_coding	99	opposite	2693_ID	chr3	124415785	124415883	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	54	59
9776	ENST00000584713.1	ENST00000360013.7_3	chr3	123851775	123851872	MIR5002	+	miRNA	chr3	123813557	124440035	KALRN	+	protein_coding	97	same	8805_ID	chr3	123851776	123851872	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	59
10697	ENST00000606361.1_1	ENST00000520539.6_5	chr8	103268619	103270049	AP002907.1	+	lncRNA	chr8	103264500	103424928	UBR5	-	protein_coding	1430	opposite	6218_ID	chr8	103268620	103270049	1430	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	58	59
1381	ENST00000365558.1	ENST00000351747.6_3	chr3	57521978	57522085	RNU6-108P	-	snRNA	chr3	57327726	57530071	DNAH12	-	protein_coding	107	same	10824_ID	chr3	57521979	57522085	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	58
1768	ENST00000384191.1	ENST00000351747.6_3	chr3	57498176	57498282	RNU6-1181P	+	snRNA	chr3	57327726	57530071	DNAH12	-	protein_coding	106	opposite	10884_ID	chr3	57498177	57498282	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	58
3186	ENST00000410948.1	ENST00000547103.6_6	chr12	80737294	80737572	RN7SKP261	-	misc_RNA	chr12	80493316	80774659	OTOGL	+	protein_coding	278	opposite	9862_ID	chr12	80737295	80737572	278	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	44	58
4518	ENST00000445982.5_1	ENST00000361445.9_5	chr1	11203954	11209594	MTOR-AS1	+	lncRNA	chr1	11166591	11322608	MTOR	-	protein_coding	5640	opposite	9180_ID	chr1	11203955	11209594	5640	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	32	58
7800	ENST00000559589.1_3	ENST00000561311.5_1	chr15	62975114	62982647	AC100839.1	-	lncRNA	chr15	62853563	63136830	TLN2	+	protein_coding	7533	opposite	3437_ID	chr15	62975115	62982647	7533	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	58
445	ENST00000317605.6_2	ENST00000357115.9_7	chr4	151503302	151505845	MAB21L2	+	protein_coding	chr4	151185586	151936879	LRBA	-	protein_coding	2543	opposite	7898_ID	chr4	151503303	151505845	2543	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	41	57
1554	ENST00000376819.4_2	ENST00000361445.9_5	chr1	11249411	11256038	ANGPTL7	+	protein_coding	chr1	11166591	11322608	MTOR	-	protein_coding	6627	opposite	5945_ID	chr1	11249412	11256038	6627	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	57
1587	ENST00000379919.6_3	ENST00000400445.7_2	chr13	36047925	36050826	MAB21L1	-	protein_coding	chr13	35516423	36246872	NBEA	+	protein_coding	2901	opposite	7897_ID	chr13	36047926	36050826	2901	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	41	57
1956	ENST00000384720.1	ENST00000361445.9_5	chr1	11286310	11286417	RNU6-291P	+	snRNA	chr1	11166591	11322608	MTOR	-	protein_coding	107	opposite	11133_ID	chr1	11286311	11286417	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	57
2273	ENST00000388402.1	ENST00000561311.5_1	chr15	63116155	63116240	MIR190A	+	miRNA	chr15	62853563	63136830	TLN2	+	protein_coding	85	same	8137_ID	chr15	63116156	63116240	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	53	57
3382	ENST00000414098.2_1	ENST00000381340.8_4	chr12	26776301	26802412	AC023051.1	+	lncRNA	chr12	26488284	26986127	ITPR2	-	protein_coding	26111	opposite	1930_ID	chr12	26776302	26802412	26111	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	22	57
5937	ENST00000507934.1_1	ENST00000357115.9_7	chr4	151500240	151502697	AC110813.1	+	lncRNA	chr4	151185586	151936879	LRBA	-	protein_coding	60778	opposite	3803_ID	chr4	151500241	151502697	2457	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	41	57
6701	ENST00000517277.1	ENST00000361445.9_5	chr1	11212406	11212509	RNU6-537P	+	snRNA	chr1	11166591	11322608	MTOR	-	protein_coding	103	opposite	11319_ID	chr1	11212407	11212509	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	57
7256	ENST00000537724.1_3	ENST00000381340.8_4	chr12	26488796	26489883	AC055720.2	-	lncRNA	chr12	26488284	26986127	ITPR2	-	protein_coding	1087	same	2329_ID	chr12	26488797	26489883	1087	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	57	57
7776	ENST00000558940.1_3	ENST00000561311.5_1	chr15	62929370	62937490	MGC15885	-	lncRNA	chr15	62853563	63136830	TLN2	+	protein_coding	8120	opposite	7945_ID	chr15	62929371	62937490	8120	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	57
8516	ENST00000577599.1	ENST00000300648.7_4	chr12	120593237	120593303	MIR4498	-	miRNA	chr12	120565005	120632518	GCN1	-	protein_coding	66	same	8578_ID	chr12	120593238	120593303	66	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	29	57
9410	ENST00000582675.1	ENST00000300648.7_4	chr12	120609842	120609930	AC004812.1	-	miRNA	chr12	120565005	120632518	GCN1	-	protein_coding	88	same	167_ID	chr12	120609843	120609930	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	57
12858	ENST00000664772.1_3	ENST00000400445.7_2	chr13	36068314	36070752	AL390071.1	-	lncRNA	chr13	35516423	36246872	NBEA	+	protein_coding	2438	opposite	5548_ID	chr13	36068315	36070752	2438	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	41	57
13084	ENST00000669641.1_3	ENST00000344204.9_2	chr5	14356994	14359394	AC016549.1	-	lncRNA	chr5	14143450	14510313	TRIO	+	protein_coding	2400	opposite	1533_ID	chr5	14356995	14359394	2400	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	57
116791	ENST00000623971.3_1	ENST00000289672.7_3	chr7	47834888	47859428	C7orf69	+	lncRNA	chr7	47814211	47988063	PKD1L1	-	protein_coding	24557	opposite	6520_ID	chr7	47834889	47859428	24540	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	47	57
553	ENST00000330927.5_4	ENST00000356175.7_3	chr17	29630787	29641072	EVI2B	-	protein_coding	chr17	29421944	29704695	NF1	+	protein_coding	10336	opposite	6944_ID	chr17	29630788	29641072	10285	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	35	56
835	ENST00000362441.1	ENST00000656420.1_1	chr15	25477533	25477615	SNORD115-34	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12307_ID	chr15	25477534	25477615	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	56
893	ENST00000362834.1	ENST00000656420.1_1	chr15	25468392	25468474	SNORD115-29	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12301_ID	chr15	25468393	25468474	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	56
1031	ENST00000363608.1	ENST00000656420.1_1	chr15	25490624	25490706	SNORD115-41	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12315_ID	chr15	25490625	25490706	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	42	56
1049	ENST00000363694.1	ENST00000656420.1_1	chr15	25486892	25486974	SNORD115-39	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12312_ID	chr15	25486893	25486974	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	36	56
1052	ENST00000363723.1	ENST00000656420.1_1	chr15	25475984	25476066	SNORD115-33	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12306_ID	chr15	25475985	25476066	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	56
1063	ENST00000363768.1	ENST00000656420.1_1	chr15	25483132	25483214	SNORD115-37	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12310_ID	chr15	25483133	25483214	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	33	56
1094	ENST00000363931.1	ENST00000656420.1_1	chr15	25467494	25467575	SNORD115-28	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	81	same	12300_ID	chr15	25467495	25467575	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	20	56
1123	ENST00000364079.1	ENST00000656420.1_1	chr15	25474113	25474195	SNORD115-32	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12305_ID	chr15	25474114	25474195	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	56
1133	ENST00000364117.1	ENST00000656420.1_1	chr15	25470349	25470431	SNORD115-30	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12303_ID	chr15	25470350	25470431	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	56
1152	ENST00000364273.1	ENST00000656420.1_1	chr15	25492491	25492573	SNORD115-42	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12316_ID	chr15	25492492	25492573	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	44	56
1250	ENST00000364764.1	ENST00000656420.1_1	chr15	25514929	25515005	SNORD115-48	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	76	same	12321_ID	chr15	25514930	25515005	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	53	56
1302	ENST00000365037.1	ENST00000656420.1_1	chr15	25484984	25485066	SNORD115-38	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12311_ID	chr15	25484985	25485066	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	34	56
1315	ENST00000365122.1	ENST00000656420.1_1	chr15	25479393	25479475	SNORD115-35	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12308_ID	chr15	25479394	25479475	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	31	56
1345	ENST00000365318.1	ENST00000656420.1_1	chr15	25472255	25472337	SNORD115-31	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12304_ID	chr15	25472256	25472337	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	56
1361	ENST00000365391.1	ENST00000656420.1_1	chr15	25496005	25496087	SNORD115-44	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12318_ID	chr15	25496006	25496087	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	47	56
1371	ENST00000365503.1	ENST00000656420.1_1	chr15	25494344	25494426	SNORD115-43	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12317_ID	chr15	25494345	25494426	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	46	56
1392	ENST00000365629.1	ENST00000656420.1_1	chr15	25481231	25481313	SNORD115-36	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12309_ID	chr15	25481232	25481313	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	32	56
1903	ENST00000384568.1	ENST00000652315.1_3	chr13	99677487	99677599	RNU6-83P	+	snRNA	chr13	99445743	99738660	DOCK9	-	protein_coding	112	opposite	11546_ID	chr13	99677488	99677599	112	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	56
2408	ENST00000391078.1	ENST00000656420.1_1	chr15	25509656	25509737	SNORD115-45	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	81	same	12319_ID	chr15	25509657	25509737	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	49	56
2447	ENST00000391226.1	ENST00000656420.1_1	chr15	25513612	25513698	SNORD115-47	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	86	same	12320_ID	chr15	25513613	25513698	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	52	56
2591	ENST00000401264.1	ENST00000648076.2_4	chr10	105807846	105807944	MIR936	-	miRNA	chr10	105791043	105845638	COL17A1	-	protein_coding	98	same	9112_ID	chr10	105807847	105807944	98	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	30	56
4299	ENST00000439367.1_1	ENST00000652315.1_3	chr13	99484337	99486883	DOCK9-AS1	+	lncRNA	chr13	99445743	99738660	DOCK9	-	protein_coding	2546	opposite	6835_ID	chr13	99484338	99486883	2546	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	39	56
5032	ENST00000458961.1	ENST00000656420.1_1	chr15	25523489	25523556	SNORD109B	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	67	same	12231_ID	chr15	25523490	25523556	67	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	55	56
5188	ENST00000462804.3_4	ENST00000356175.7_3	chr17	29643427	29648640	EVI2A	-	protein_coding	chr17	29421944	29704695	NF1	+	protein_coding	5340	opposite	6943_ID	chr17	29643428	29648640	5213	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	35	56
8083	ENST00000565581.1_1	ENST00000656420.1_1	chr15	25590779	25592382	AC100774.1	-	lncRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	1603	opposite	3405_ID	chr15	25590780	25592382	1603	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	56	56
8687	ENST00000578584.5_5	ENST00000356175.7_3	chr17	29632230	29645849	AC134669.1	-	protein_coding	chr17	29421944	29704695	NF1	+	protein_coding	13619	opposite	4129_ID	chr17	29632231	29645849	13619	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	35	56
8955	ENST00000580156.1_3	ENST00000356175.7_3	chr17	29599466	29624248	OMG	-	processed_transcript	chr17	29421944	29704695	NF1	+	protein_coding	25527	opposite	9335_ID	chr17	29599467	29624248	24782	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	35	56
9685	ENST00000584167.1_1	ENST00000674853.1_1	chr18	10704294	10709597	AP001180.4	+	lncRNA	chr18	10670243	11149568	PIEZO2	-	protein_coding	5303	opposite	6109_ID	chr18	10704295	10709597	5303	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	40	56
9724	ENST00000584382.1_1	ENST00000356175.7_3	chr17	29460199	29465536	AC079915.1	+	lncRNA	chr17	29421944	29704695	NF1	+	protein_coding	5337	same	2685_ID	chr17	29460200	29465536	5337	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	56
10711	ENST00000606510.1	ENST00000656420.1_1	chr15	25488760	25488842	SNORD115-40	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12314_ID	chr15	25488761	25488842	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	38	56
11792	ENST00000630523.1_3	ENST00000372731.8_4	chr9	131392606	131393964	AL356481.3	-	lncRNA	chr9	131314836	131395941	SPTAN1	+	protein_coding	1358	opposite	5389_ID	chr9	131392607	131393964	1358	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	51	56
85810	ENST00000362619.1	ENST00000656420.1_1	chr15	25460687	25460769	SNORD115-25	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12298_ID	chr15	25460688	25460769	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	56
91910	ENST00000362963.1	ENST00000656420.1_1	chr15	25453229	25453310	SNORD115-21	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	81	same	12294_ID	chr15	25453230	25453310	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	56
93610	ENST00000363090.1	ENST00000656420.1_1	chr15	25440067	25440148	SNORD115-14	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	81	same	12286_ID	chr15	25440068	25440148	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	56
94010	ENST00000363098.1	ENST00000656420.1_1	chr15	25449503	25449585	SNORD115-19	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12291_ID	chr15	25449504	25449585	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	56
97210	ENST00000363293.1	ENST00000656420.1_1	chr15	25448373	25448455	SNORD115-18	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12290_ID	chr15	25448374	25448455	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	56
101910	ENST00000363528.1	ENST00000656420.1_1	chr15	25458794	25458876	SNORD115-24	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12297_ID	chr15	25458795	25458876	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	56
108810	ENST00000363887.1	ENST00000656420.1_1	chr15	25444594	25444676	SNORD115-16	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12288_ID	chr15	25444595	25444676	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	56
118710	ENST00000364430.1	ENST00000656420.1_1	chr15	25465643	25465725	SNORD115-27	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12299_ID	chr15	25465644	25465725	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	56
119310	ENST00000364456.1	ENST00000656420.1_1	chr15	25455064	25455146	SNORD115-22	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12295_ID	chr15	25455065	25455146	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	56
119510	ENST00000364461.1	ENST00000656420.1_1	chr15	25456942	25457024	SNORD115-23	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12296_ID	chr15	25456943	25457024	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	56
122310	ENST00000364612.1	ENST00000656420.1_1	chr15	25446469	25446551	SNORD115-17	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12289_ID	chr15	25446470	25446551	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	56
126410	ENST00000364809.1	ENST00000656420.1_1	chr15	25442722	25442803	SNORD115-15	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	81	same	12287_ID	chr15	25442723	25442803	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	56
131710	ENST00000365099.1	ENST00000656420.1_1	chr15	25451408	25451490	SNORD115-20	+	snoRNA	chr15	25438459	25665483	SNHG14	+	lncRNA	82	same	12293_ID	chr15	25451409	25451490	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	56
5741	ENST00000501075.2_1	ENST00000644480.2_8	chr12	6687787	6693905	AC006064.2	+	lncRNA	chr12	6666051	6716533	AC006064.6	-	nonsense_mediated_decay	6118	opposite	412_ID	chr12	6687788	6693905	6118	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	26	55
9609	ENST00000583746.1	ENST00000258390.12_5	chr2	225875177	225875257	MIR4439	-	miRNA	chr2	225629806	225907185	DOCK10	-	protein_coding	80	same	8542_ID	chr2	225875178	225875257	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	55
9713	ENST00000584321.1_1	ENST00000674853.1_1	chr18	10893614	10908781	AP005120.1	+	lncRNA	chr18	10670243	11149568	PIEZO2	-	protein_coding	15167	opposite	6285_ID	chr18	10893615	10908781	15167	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	55
11292	ENST00000615133.2_4	ENST00000616317.5_5	chr17	35732926	35749662	C17orf78	+	protein_coding	chr17	35441926	35766927	ACACA	-	protein_coding	16736	opposite	6489_ID	chr17	35732927	35749662	16736	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	55
11388	ENST00000617427.1_1	ENST00000616317.5_5	chr17	35743820	35744861	AC243654.3	+	lncRNA	chr17	35441926	35766927	ACACA	-	protein_coding	1041	opposite	4280_ID	chr17	35743821	35744861	1041	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	55
11785	ENST00000629902.1_1	ENST00000372731.8_4	chr9	131358171	131358912	AL356481.2	+	lncRNA	chr9	131314836	131395941	SPTAN1	+	protein_coding	741	same	5388_ID	chr9	131358172	131358912	741	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	55
18	ENST00000215727.10_2	ENST00000255882.11_5	chr22	21128400	21142008	SERPIND1	+	protein_coding	chr22	21061978	21213099	PI4KA	-	protein_coding	13608	opposite	12041_ID	chr22	21128401	21142008	13608	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	54
3989	ENST00000430719.1	ENST00000255882.11_5	chr22	21077334	21080208	AC007308.6	+	antisense	chr22	21061978	21213099	PI4KA	-	protein_coding	2874	opposite	541_ID	chr22	21077335	21080208	2874	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	42	54
4767	ENST00000452714.1_1	ENST00000428084.1	chr7	111448571	111461829	DOCK4-AS1	+	lncRNA	chr7	111366533	111846466	DOCK4	-	protein_coding	13258	opposite	6834_ID	chr7	111448572	111461829	13258	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	28	53
10805	ENST00000607364.1	ENST00000266037.10_2	chr3	50712510	50712594	MIR4787	+	miRNA	chr3	50712357	51421629	DOCK3	+	protein_coding	84	same	8774_ID	chr3	50712511	50712594	84	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	53
11762	ENST00000628464.2_2	ENST00000272895.12_5	chr2	215893780	215947495	AC072062.1	+	lncRNA	chr2	215796265	216003349	ABCA12	-	protein_coding	80706	opposite	2499_ID	chr2	215893781	215947495	53715	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	53
12940	ENST00000666594.1_3	ENST00000428084.1	chr7	111397242	111402272	AC003077.1	+	lncRNA	chr7	111366533	111846466	DOCK4	-	protein_coding	5166	opposite	81_ID	chr7	111397243	111402272	5030	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	40	53
2264	ENST00000386157.1	ENST00000389561.7_2	chr12	132515768	132515904	SNORA49	+	snoRNA	chr12	132434486	132565005	EP400	+	protein_coding	136	same	12178_ID	chr12	132515769	132515904	136	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	29	52
3177	ENST00000410899.1	ENST00000389794.7_3	chr1	236016299	236016360	MIR1537	-	miRNA	chr1	235824349	236030224	LYST	-	protein_coding	61	same	8110_ID	chr1	236016300	236016360	61	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	52
3307	ENST00000412098.2_1	ENST00000389794.7_3	chr1	236002782	236003482	LYST-AS1	+	lncRNA	chr1	235824349	236030224	LYST	-	protein_coding	700	opposite	7895_ID	chr1	236002783	236003482	700	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	52
3646	ENST00000420941.2_3	ENST00000280333.9_3	chr10	128811764	128824739	AL359094.2	-	lncRNA	chr10	128593977	129250781	DOCK1	+	protein_coding	12975	opposite	5474_ID	chr10	128811765	128824739	12975	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	52
6322	ENST00000516247.1	ENST00000389794.7_3	chr1	236026687	236026737	RNU5E-2P	-	snRNA	chr1	235824349	236030224	LYST	-	protein_coding	50	same	10746_ID	chr1	236026688	236026737	50	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	52
10403	ENST00000601242.5_4	ENST00000280333.9_3	chr10	128798540	128824686	AL359094.1	-	lncRNA	chr10	128593977	129250781	DOCK1	+	protein_coding	38413	opposite	5473_ID	chr10	128798541	128824686	26146	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	52
1320	ENST00000365155.1	ENST00000367478.9_4	chr1	186280956	186281060	RNU6-1240P	-	snRNA	chr1	186280783	186344385	TPR	-	protein_coding	104	same	10939_ID	chr1	186280957	186281060	104	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	51	51
1562	ENST00000377365.4_4	ENST00000520908.7_4	chr5	169288306	169407499	INSYN2B	-	protein_coding	chr5	169064278	169510386	DOCK2	+	protein_coding	119193	opposite	7361_ID	chr5	169288307	169407499	119193	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	51
4335	ENST00000440406.2_1	ENST00000301015.14_5	chr16	88797587	88805596	AC138028.2	+	lncRNA	chr16	88781745	88851628	PIEZO1	-	protein_coding	10246	opposite	4173_ID	chr16	88797588	88805596	8009	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	51
5269	ENST00000468423.2	ENST00000261405.10_3	chr12	6204866	6205136	RN7SL69P	-	misc_RNA	chr12	6058042	6233836	VWF	-	protein_coding	270	same	10372_ID	chr12	6204867	6205136	270	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	51
6887	ENST00000522781.6_5	ENST00000280333.9_3	chr10	128933693	128994855	INSYN2A	-	protein_coding	chr10	128593977	129250781	DOCK1	+	protein_coding	61166	opposite	7360_ID	chr10	128933694	128994855	61162	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	51
6905	ENST00000523398.1_3	ENST00000520908.7_4	chr5	169199969	169206369	AC008680.1	-	lncRNA	chr5	169064278	169510386	DOCK2	+	protein_coding	6400	opposite	773_ID	chr5	169199970	169206369	6400	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	51
8058	ENST00000564984.1_1	ENST00000301015.14_5	chr16	88785022	88786867	AC138028.4	+	lncRNA	chr16	88781745	88851628	PIEZO1	-	protein_coding	1845	opposite	4174_ID	chr16	88785023	88786867	1845	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	41	51
8117	ENST00000566114.1_1	ENST00000301015.14_5	chr16	88808038	88808775	AC138028.5	+	lncRNA	chr16	88781745	88851628	PIEZO1	-	protein_coding	737	opposite	4175_ID	chr16	88808039	88808775	737	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	51
9289	ENST00000581976.1	ENST00000520908.7_4	chr5	169455491	169455570	MIR378E	+	miRNA	chr5	169064278	169510386	DOCK2	+	protein_coding	79	same	8405_ID	chr5	169455492	169455570	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	34	51
577	ENST00000333666.1_1	ENST00000301015.14_5	chr16	88809174	88812156	AC138028.1	+	lncRNA	chr16	88781745	88851628	PIEZO1	-	protein_coding	2982	opposite	4172_ID	chr16	88809175	88812156	2982	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	50
2838	ENST00000408575.1	ENST00000304636.9_3	chr2	189842817	189842887	MIR1245A	+	miRNA	chr2	189839098	189877472	COL3A1	+	protein_coding	70	same	7999_ID	chr2	189842818	189842887	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	50
5595	ENST00000490461.2	ENST00000508244.5_8	chr5	37246276	37246581	RN7SL37P	-	misc_RNA	chr5	37106329	37247894	CPLANE1	-	protein_coding	305	same	10143_ID	chr5	37246277	37246581	305	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	50
7510	ENST00000550634.1_3	ENST00000266688.5	chr12	80977461	80987480	AC074031.1	-	lncRNA	chr12	80838125	81072802	PTPRQ	+	protein_coding	10019	opposite	2566_ID	chr12	80977462	80987480	10019	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	31	50
8640	ENST00000578292.1	ENST00000301015.14_5	chr16	88782685	88782745	MIR4722	-	miRNA	chr16	88781745	88851628	PIEZO1	-	protein_coding	60	same	8710_ID	chr16	88782686	88782745	60	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	48	50
641	ENST00000342144.3_2	ENST00000256339.8_2	chr14	93813527	93814702	COX8C	+	protein_coding	chr14	93799564	94173618	UNC79	+	protein_coding	1175	same	6696_ID	chr14	93813528	93814702	1175	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	49
1477	ENST00000371129.4_2	ENST00000635253.2_4	chr1	63063190	63071984	ANGPTL3	+	protein_coding	chr1	62920396	63154057	DOCK7	-	protein_coding	8794	opposite	5944_ID	chr1	63063191	63071984	8794	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	49
6547	ENST00000516911.1	ENST00000256339.8_2	chr14	93903745	93903856	RNU6-1258P	-	snRNA	chr14	93799564	94173618	UNC79	+	protein_coding	111	opposite	10953_ID	chr14	93903746	93903856	111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	49
7153	ENST00000532061.2_3	ENST00000529681.5_2	chr11	1263490	1270906	MUC5B-AS1	-	lncRNA	chr11	1244295	1283402	MUC5B	+	protein_coding	7416	opposite	9187_ID	chr11	1263491	1270906	7416	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	31	49
7959	ENST00000562970.1_3	ENST00000262510.10_3	chr16	57086416	57092409	AC023825.2	-	lncRNA	chr16	57023409	57117436	NLRC5	+	protein_coding	5993	opposite	1976_ID	chr16	57086417	57092409	5993	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	25	49
10150	ENST00000593719.1	ENST00000635253.2_4	chr1	63073436	63075249	AL138847.1	+	protein_coding	chr1	62920396	63154057	DOCK7	-	protein_coding	1813	opposite	4980_ID	chr1	63073437	63075249	1813	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	49
11633	ENST00000622847.1_1	ENST00000256339.8_2	chr14	93800873	93801403	AL122023.1	+	lncRNA	chr14	93799564	94173618	UNC79	+	protein_coding	530	same	4800_ID	chr14	93800874	93801403	530	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	49
11635	ENST00000622896.1_1	ENST00000317147.10_5	chr16	58556873	58557746	AC009118.3	+	lncRNA	chr16	58553854	58663730	CNOT1	-	protein_coding	873	opposite	882_ID	chr16	58556874	58557746	873	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	47	49
607	ENST00000338087.10_4	ENST00000220616.9_2	chr8	134048972	134114846	SLA	-	protein_coding	chr8	133879202	134147143	TG	+	protein_coding	66184	opposite	12069_ID	chr8	134048973	134114846	65874	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	42	48
864	ENST00000362692.1	ENST00000676179.1_1	chr1	10359023	10359130	RNU6-37P	+	snRNA	chr1	10270627	10441661	KIF1B	+	protein_coding	107	same	11196_ID	chr1	10359024	10359130	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	48
2742	ENST00000408342.1	ENST00000375206.6_1	chr9	100125835	100125963	MIR1302-8	-	miRNA	chr9	100000778	100139569	STRA6LP	+	lncRNA	128	opposite	8074_ID	chr9	100125836	100125963	128	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	40	48
2763	ENST00000408396.1	ENST00000392521.7_5	chr12	120151438	120151529	MIR1178	-	miRNA	chr12	120123595	120315124	CIT	-	protein_coding	91	same	7965_ID	chr12	120151439	120151529	91	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	34	48
3531	ENST00000417970.2_3	ENST00000360467.7_3	chr13	111154921	111160526	COL4A2-AS1	-	lncRNA	chr13	110959630	111165556	COL4A2	+	protein_coding	5605	opposite	6688_ID	chr13	111154922	111160526	5605	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	42	48
3946	ENST00000429661.1_3	ENST00000432829.7_4	chr9	267965	273002	AL158832.1	-	lncRNA	chr9	214864	465255	DOCK8	+	protein_coding	5037	opposite	5117_ID	chr9	267966	273002	5037	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	48
4976	ENST00000458403.2_3	ENST00000360467.7_3	chr13	111108742	111115634	COL4A2-AS2	-	lncRNA	chr13	110959630	111165556	COL4A2	+	protein_coding	6892	opposite	6689_ID	chr13	111108743	111115634	6892	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	21	48
5746	ENST00000501371.5_3	ENST00000327702.12_4	chr12	2785166	2800284	CACNA1C-AS1	-	lncRNA	chr12	2162152	2807116	CACNA1C	+	protein_coding	15200	opposite	6527_ID	chr12	2785167	2800284	15118	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	40	48
6364	ENST00000516368.1	ENST00000664864.1_3	chr19	13486742	13486827	AC005513.1	-	miRNA	chr19	13318859	13710760	CACNA1A	-	protein_coding	85	same	299_ID	chr19	13486743	13486827	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	48
7220	ENST00000535109.1_1	ENST00000392521.7_5	chr12	120137572	120138816	AC002563.1	+	lncRNA	chr12	120123595	120315124	CIT	-	protein_coding	1244	opposite	75_ID	chr12	120137573	120138816	1244	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	44	48
7352	ENST00000543559.1_3	ENST00000327702.12_4	chr12	2712515	2716606	CACNA1C-AS3	-	lncRNA	chr12	2162152	2807116	CACNA1C	+	protein_coding	4091	opposite	6529_ID	chr12	2712516	2716606	4091	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	23	48
7389	ENST00000545526.1_3	ENST00000327702.12_4	chr12	2777665	2781386	CACNA1C-AS2	-	lncRNA	chr12	2162152	2807116	CACNA1C	+	protein_coding	3721	opposite	6528_ID	chr12	2777666	2781386	3721	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	38	48
8450	ENST00000577266.1	ENST00000676179.1_1	chr1	10287775	10287861	MIR1273D	+	miRNA	chr1	10270627	10441661	KIF1B	+	protein_coding	86	same	8032_ID	chr1	10287776	10287861	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	48
9714	ENST00000584329.1	ENST00000676179.1_1	chr1	10366522	10366813	RN7SL731P	+	misc_RNA	chr1	10270627	10441661	KIF1B	+	protein_coding	291	same	10387_ID	chr1	10366523	10366813	291	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	48
10007	ENST00000588634.1_1	ENST00000294618.12_4	chr19	11314303	11326844	AC011472.1	+	lncRNA	chr19	11309970	11373200	DOCK6	-	protein_coding	12541	opposite	1234_ID	chr19	11314304	11326844	12541	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	31	48
11347	ENST00000616433.4_2	ENST00000294618.12_4	chr19	11348125	11352619	ANGPTL8	+	protein_coding	chr19	11309970	11373200	DOCK6	-	protein_coding	4494	opposite	5946_ID	chr19	11348126	11352619	4494	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	48
12149	ENST00000649808.1_3	ENST00000327702.12_4	chr12	2549354	2566558	AC005414.1	-	lncRNA	chr12	2162152	2807116	CACNA1C	+	protein_coding	17204	opposite	295_ID	chr12	2549355	2566558	17204	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	48
941	ENST00000363133.1	ENST00000675690.1_1	chr2	27698360	27698462	RNU6-986P	-	snRNA	chr2	27667243	27712621	IFT172	-	protein_coding	102	same	11654_ID	chr2	27698361	27698462	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	47
1678	ENST00000383931.1	ENST00000401783.6_3	chr9	113131871	113131978	RNU6-1039P	-	snRNA	chr9	113127530	113342160	SVEP1	-	protein_coding	107	same	10785_ID	chr9	113131872	113131978	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	47	47
2383	ENST00000390952.1	ENST00000401783.6_3	chr9	113301969	113302078	RNU6-124P	-	snRNA	chr9	113127530	113342160	SVEP1	-	protein_coding	109	same	10946_ID	chr9	113301970	113302078	109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	47
2890	ENST00000408681.1	ENST00000396625.5_4	chr2	227988958	227989074	AC079235.1	+	miRNA	chr2	227867429	228028921	COL4A4	-	protein_coding	116	opposite	2634_ID	chr2	227988959	227989074	116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	47
5159	ENST00000460977.1_3	ENST00000350721.9_6	chr3	142184156	142191179	AC109992.2	-	lncRNA	chr3	142168076	142297575	ATR	-	protein_coding	7023	same	3780_ID	chr3	142184157	142191179	7023	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	37	47
7126	ENST00000531288.1_1	ENST00000524974.5_4	chr1	144874944	144878163	AC239802.1	+	lncRNA	chr1	144851487	145075901	PDE4DIP	-	protein_coding	3219	opposite	4267_ID	chr1	144874945	144878163	3219	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	31	47
7156	ENST00000532137.1_1	ENST00000524974.5_4	chr1	144858173	144865800	AC239802.2	+	lncRNA	chr1	144851487	145075901	PDE4DIP	-	protein_coding	7627	opposite	4268_ID	chr1	144858174	144865800	7627	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	38	47
7337	ENST00000542680.1_1	ENST00000327702.12_4	chr12	2378941	2398103	CACNA1C-IT3	+	lncRNA	chr12	2162152	2807116	CACNA1C	+	protein_coding	19162	same	6533_ID	chr12	2378942	2398103	19162	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	47
9180	ENST00000581369.1	ENST00000294618.12_4	chr19	11344418	11344674	RN7SL298P	-	misc_RNA	chr19	11309970	11373200	DOCK6	-	protein_coding	256	same	10088_ID	chr19	11344419	11344674	256	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	47
10400	ENST00000601203.1_1	ENST00000356956.6_3	chr6	160424322	160428696	AIRN	-	lncRNA	chr6	160390113	160532536	IGF2R	+	protein_coding	4374	opposite	4420_ID	chr6	160424323	160428696	4374	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	47
11215	ENST00000613391.1_1	ENST00000327702.12_4	chr12	2326627	2327086	AC005344.1	-	lncRNA	chr12	2162152	2807116	CACNA1C	+	protein_coding	459	opposite	284_ID	chr12	2326628	2327086	459	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	47
11319	ENST00000615848.1_1	ENST00000294618.12_4	chr19	11331758	11332249	AC011472.4	+	lncRNA	chr19	11309970	11373200	DOCK6	-	protein_coding	491	opposite	1239_ID	chr19	11331759	11332249	491	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	47
12099	ENST00000648763.1_3	ENST00000327702.12_4	chr12	2442026	2444868	AC005293.1	-	lncRNA	chr12	2162152	2807116	CACNA1C	+	protein_coding	2842	opposite	269_ID	chr12	2442027	2444868	2842	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	47
12276	ENST00000652508.1_1	ENST00000359568.10_3	chr21	47746201	47746405	AP000471.1	+	protein_coding	chr21	47744069	47865682	PCNT	+	protein_coding	204	same	5993_ID	chr21	47746202	47746405	204	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	47
12842	ENST00000664551.1_1	ENST00000220616.9_2	chr8	134067203	134070012	PTCSC1	+	lncRNA	chr8	133879202	134147143	TG	+	protein_coding	2809	same	9673_ID	chr8	134067204	134070012	2809	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	41	47
13092	ENST00000669813.1_4	ENST00000327702.12_4	chr12	2328650	2332613	CACNA1C-AS4	-	lncRNA	chr12	2162152	2807116	CACNA1C	+	protein_coding	3995	opposite	6530_ID	chr12	2328651	2332613	3963	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	47
1745	ENST00000384121.1	ENST00000372899.6_3	chr6	42631899	42632006	RNU6-890P	+	snRNA	chr6	42531766	42661243	UBR2	+	protein_coding	107	same	11587_ID	chr6	42631900	42632006	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	32	46
3170	ENST00000410856.1	ENST00000524974.5_4	chr1	144944671	144944750	RNU2-38P	+	snRNA	chr1	144851487	145075901	PDE4DIP	-	protein_coding	79	opposite	10635_ID	chr1	144944672	144944750	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	46
3574	ENST00000419029.1_1	ENST00000618828.1_3	chr2	189959788	189960884	AC133106.1	+	lncRNA	chr2	189896640	190044605	COL5A2	-	protein_coding	1096	opposite	4108_ID	chr2	189959789	189960884	1096	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	46
3797	ENST00000424733.1_3	ENST00000355666.5_1	chr21	38559966	38566227	TTC3-AS1	-	lncRNA	chr21	38445570	38575404	TTC3	+	protein_coding	6261	opposite	12809_ID	chr21	38559967	38566227	6261	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	39	46
4408	ENST00000442428.1_3	ENST00000319217.12_5	chr9	13274508	13279186	AL162386.2	-	lncRNA	chr9	13105705	13279691	MPDZ	-	protein_coding	4678	same	5193_ID	chr9	13274509	13279186	4678	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	46
4425	ENST00000442828.2_1	ENST00000268712.8_5	chr17	15943785	15944587	AC002553.1	+	lncRNA	chr17	15932470	16118848	NCOR1	-	protein_coding	802	opposite	69_ID	chr17	15943786	15944587	802	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	43	46
6526	ENST00000516847.1	ENST00000524974.5_4	chr1	145044650	145044900	RN7SKP88	+	misc_RNA	chr1	144851487	145075901	PDE4DIP	-	protein_coding	250	opposite	9931_ID	chr1	145044651	145044900	250	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	46
8246	ENST00000568795.1_1	ENST00000262304.9_4	chr16	2162335	2163343	AC009065.6	+	lncRNA	chr16	2138708	2185899	PKD1	-	protein_coding	1008	opposite	855_ID	chr16	2162336	2163343	1008	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	46
9139	ENST00000581095.1	ENST00000618828.1_3	chr2	189997761	189997837	MIR3129	-	miRNA	chr2	189896640	190044605	COL5A2	-	protein_coding	76	same	8252_ID	chr2	189997762	189997837	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	46
9282	ENST00000581952.1	ENST00000637424.1_1	chr3	53631902	53631994	AC024149.1	+	miRNA	chr3	53362989	53845433	CACNA1D	+	protein_coding	92	same	2003_ID	chr3	53631903	53631994	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	46
9317	ENST00000582173.1	ENST00000524974.5_4	chr1	144877329	144877395	AL138796.1	+	miRNA	chr1	144851487	145075901	PDE4DIP	-	protein_coding	66	opposite	4975_ID	chr1	144877330	144877395	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	46
10230	ENST00000596396.1	ENST00000524974.5_4	chr1	144989308	144991365	AL590452.1	+	protein_coding	chr1	144851487	145075901	PDE4DIP	-	protein_coding	2057	opposite	5770_ID	chr1	144989309	144991365	2057	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	46
11025	ENST00000609697.1_1	ENST00000428314.5_1	chr2	128383571	128384423	AC010976.2	-	lncRNA	chr2	128293377	128395303	MYO7B	+	protein_coding	852	opposite	1168_ID	chr2	128383572	128384423	852	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	46
11073	ENST00000610119.1_1	ENST00000524974.5_4	chr1	145018394	145018959	AC245297.2	+	lncRNA	chr1	144851487	145075901	PDE4DIP	-	protein_coding	565	opposite	4311_ID	chr1	145018395	145018959	565	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	46
602	ENST00000337331.10_4	ENST00000471702.2_5	chr3	132399452	132441253	NPHP3	-	protein_coding	chr3	132276985	132441303	NPHP3-ACAD11	-	nonsense_mediated_decay	41806	same	9288_ID	chr3	132399453	132441253	41801	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	45
887	ENST00000362804.1	ENST00000268712.8_5	chr17	16041081	16041186	RNU6-862P	-	snRNA	chr17	15932470	16118848	NCOR1	-	protein_coding	105	same	11567_ID	chr17	16041082	16041186	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	45
2044	ENST00000384877.1	ENST00000380249.5_3	chr9	20716103	20716187	MIR491	+	miRNA	chr9	20658307	20995954	FOCAD	+	protein_coding	84	same	8798_ID	chr9	20716104	20716187	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	45
2909	ENST00000408729.1	ENST00000262304.9_4	chr16	2140195	2140285	MIR1225	-	miRNA	chr16	2138708	2185899	PKD1	-	protein_coding	90	same	7984_ID	chr16	2140196	2140285	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	45	45
4317	ENST00000439876.1_3	ENST00000380249.5_3	chr9	20683302	20684687	FOCAD-AS1	-	lncRNA	chr9	20658307	20995954	FOCAD	+	protein_coding	1385	opposite	7055_ID	chr9	20683303	20684687	1385	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	45
5361	ENST00000473804.2	ENST00000268712.8_5	chr17	16095145	16095466	RN7SL442P	+	misc_RNA	chr17	15932470	16118848	NCOR1	-	protein_coding	321	opposite	10185_ID	chr17	16095146	16095466	321	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	45
5567	ENST00000488720.1_3	ENST00000358537.7_2	chr3	58148273	58156363	FLNB-AS1	-	lncRNA	chr3	57994126	58157978	FLNB	+	protein_coding	8090	opposite	7043_ID	chr3	58148274	58156363	8090	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	42	45
6433	ENST00000516574.1	ENST00000268712.8_5	chr17	16002017	16002121	RNU6-314P	+	snRNA	chr17	15932470	16118848	NCOR1	-	protein_coding	104	opposite	11149_ID	chr17	16002018	16002121	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	45
8107	ENST00000565937.1_3	ENST00000262304.9_4	chr16	2144830	2147027	AC009065.5	-	lncRNA	chr16	2138708	2185899	PKD1	-	protein_coding	2197	same	854_ID	chr16	2144831	2147027	2197	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	34	45
9550	ENST00000583451.1	ENST00000262304.9_4	chr16	2183119	2183205	MIR4516	+	miRNA	chr16	2138708	2185899	PKD1	-	protein_coding	86	opposite	8594_ID	chr16	2183120	2183205	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	45
10466	ENST00000602568.1_1	ENST00000355666.5_1	chr21	38473113	38473643	AP001429.1	+	lncRNA	chr21	38445570	38575404	TTC3	+	protein_coding	530	same	6131_ID	chr21	38473114	38473643	530	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	45
11901	ENST00000639380.1_3	ENST00000404826.7_3	chr7	4169812	4174469	AC017000.1	-	lncRNA	chr7	3340883	4308632	SDK1	+	protein_coding	4657	opposite	1582_ID	chr7	4169813	4174469	4657	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	28	45
59951	ENST00000509820.1_1	ENST00000471702.2_5	chr3	132320231	132337811	ACKR4	+	nonsense_mediated_decay	chr3	132276985	132441303	NPHP3-ACAD11	-	nonsense_mediated_decay	21698	opposite	4325_ID	chr3	132320232	132337811	17580	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	37	45
94871	ENST00000583027.1	ENST00000379310.8_8	chr13	42142421	42142531	MIR5006	-	miRNA	chr13	42140970	42535245	VWA8	-	protein_coding	110	same	8809_ID	chr13	42142422	42142531	110	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	45	45
1789	ENST00000384235.1	ENST00000379310.8_8	chr13	42479253	42479360	RNU6-74P	+	snRNA	chr13	42140970	42535245	VWA8	-	protein_coding	107	opposite	11473_ID	chr13	42479254	42479360	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	44
2301	ENST00000390210.1	ENST00000404826.7_3	chr7	3458698	3458781	AC069286.1	+	miRNA	chr7	3340883	4308632	SDK1	+	protein_coding	83	same	2482_ID	chr7	3458699	3458781	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	44
3882	ENST00000427920.1_3	ENST00000404826.7_3	chr7	3682446	3683416	AC011284.1	-	lncRNA	chr7	3340883	4308632	SDK1	+	protein_coding	970	opposite	1184_ID	chr7	3682447	3683416	970	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	44
4792	ENST00000453457.7_5	ENST00000335473.12_4	chr22	26272820	26297009	MYO18B-AS1	-	lncRNA	chr22	26138154	26427011	MYO18B	+	protein_coding	26394	opposite	9209_ID	chr22	26272821	26297009	24189	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	25	44
5205	ENST00000463999.2	ENST00000379310.8_8	chr13	42381812	42382108	RN7SL515P	+	misc_RNA	chr13	42140970	42535245	VWA8	-	protein_coding	296	opposite	10242_ID	chr13	42381813	42382108	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	44
8777	ENST00000579100.1_1	ENST00000392650.8_4	chr17	71637164	71639245	AC032019.1	+	lncRNA	chr17	71330522	71640584	SDK2	-	protein_coding	2081	opposite	2242_ID	chr17	71637165	71639245	2081	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	44
9600	ENST00000583712.2_2	ENST00000392650.8_4	chr17	71509750	71517546	AC124804.1	+	lncRNA	chr17	71330522	71640584	SDK2	-	protein_coding	7939	opposite	4012_ID	chr17	71509751	71517546	7796	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	44
11482	ENST00000619719.1_6	ENST00000373827.6_3	chr10	61810425	61819381	AL592430.1	+	lncRNA	chr10	61788158	62493248	ANK3	-	protein_coding	10076	opposite	5812_ID	chr10	61810426	61819381	8956	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	41	44
17410	ENST00000264991.8_3	ENST00000471702.2_5	chr3	132373289	132396941	UBA5	+	protein_coding	chr3	132276985	132441303	NPHP3-ACAD11	-	nonsense_mediated_decay	25349	opposite	12839_ID	chr3	132373290	132396941	23652	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	44
335	ENST00000302632.4_4	ENST00000474524.5_2	chr3	151054630	151102541	P2RY12	-	protein_coding	chr3	150804675	151154860	MED12L	+	protein_coding	47911	opposite	9488_ID	chr3	151054631	151102541	47911	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	43
1161	ENST00000364312.1	ENST00000675286.1_2	chr3	10079235	10079339	RNU6-670P	+	snRNA	chr3	10068120	10143616	FANCD2	+	protein_coding	104	same	11421_ID	chr3	10079236	10079339	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	43
1728	ENST00000384059.1	ENST00000539542.5_3	chr5	118474553	118474660	RNU6-701P	+	snRNA	chr5	118407083	118584822	DMXL1	+	protein_coding	107	same	11440_ID	chr5	118474554	118474660	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	43
2357	ENST00000390833.1	ENST00000529230.6_4	chr11	46783938	46784049	SNORD67	-	snoRNA	chr11	46764597	46867831	CKAP5	-	protein_coding	3734	same	12437_ID	chr11	46783939	46784049	111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	31	43
2385	ENST00000390957.1	ENST00000649566.1_4	chr5	94857072	94857179	RNU6-308P	+	snRNA	chr5	94797458	94890681	TTC37	-	protein_coding	107	opposite	11145_ID	chr5	94857073	94857179	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	43
3156	ENST00000410781.1	ENST00000368507.8_4	chr6	117622617	117622921	RN7SKP51	+	misc_RNA	chr6	117608515	117747105	ROS1	-	protein_coding	304	opposite	9902_ID	chr6	117622618	117622921	304	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	42	43
3218	ENST00000411124.1	ENST00000335473.12_4	chr22	26359948	26360239	RN7SKP169	-	misc_RNA	chr22	26138154	26427011	MYO18B	+	protein_coding	291	opposite	9800_ID	chr22	26359949	26360239	291	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	39	43
3776	ENST00000424274.1_1	ENST00000503581.6_5	chr6	65087687	65122672	AL357375.1	+	lncRNA	chr6	64429875	66417119	EYS	-	protein_coding	34985	opposite	5424_ID	chr6	65087688	65122672	34985	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	29	43
4191	ENST00000436423.1_3	ENST00000335473.12_4	chr22	26355039	26379492	Z98949.2	-	lncRNA	chr22	26138154	26427011	MYO18B	+	protein_coding	24453	opposite	12984_ID	chr22	26355040	26379492	24453	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	39	43
5963	ENST00000508959.1_3	ENST00000672955.1_3	chr4	113900745	113993118	ANK2-AS1	-	lncRNA	chr4	113739208	114305377	ANK2	+	protein_coding	98691	opposite	5947_ID	chr4	113900746	113993118	92373	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	43
6045	ENST00000511590.2_3	ENST00000672955.1_3	chr4	113801453	113803486	AC017007.5	-	lncRNA	chr4	113739208	114305377	ANK2	+	protein_coding	2033	opposite	1588_ID	chr4	113801454	113803486	2033	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	43
6120	ENST00000513645.2_3	ENST00000672955.1_3	chr4	113952442	113955707	AC093879.1	-	lncRNA	chr4	113739208	114305377	ANK2	+	protein_coding	3265	opposite	3254_ID	chr4	113952443	113955707	3265	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	43
6238	ENST00000516005.1	ENST00000368507.8_4	chr6	117620526	117620801	RN7SKP18	+	misc_RNA	chr6	117608515	117747105	ROS1	-	protein_coding	275	opposite	9807_ID	chr6	117620527	117620801	275	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	43	43
6872	ENST00000522388.1_1	ENST00000265709.13_5	chr8	41518508	41523084	AC113133.1	+	lncRNA	chr8	41510743	41754280	ANK1	-	protein_coding	4576	opposite	3833_ID	chr8	41518509	41523084	4576	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	41	43
8877	ENST00000579697.1	ENST00000529230.6_4	chr11	46774674	46774742	MIR5582	-	miRNA	chr11	46764597	46867831	CKAP5	-	protein_coding	68	same	8935_ID	chr11	46774675	46774742	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	37	43
8902	ENST00000579841.1	ENST00000539542.5_3	chr5	118490331	118490411	MIR5706	+	miRNA	chr5	118407083	118584822	DMXL1	+	protein_coding	80	same	8974_ID	chr5	118490332	118490411	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	43
9359	ENST00000582362.1	ENST00000335473.12_4	chr22	26279040	26279128	Z98949.1	-	miRNA	chr22	26138154	26427011	MYO18B	+	protein_coding	88	opposite	12983_ID	chr22	26279041	26279128	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	43
10173	ENST00000594418.1_1	ENST00000372577.2_2	chr9	131766780	131767277	AL592211.1	-	lncRNA	chr9	131709977	131769375	NUP188	+	protein_coding	497	opposite	5807_ID	chr9	131766781	131767277	497	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	38	43
10374	ENST00000600512.1_1	ENST00000519716.6_3	chr19	17724530	17725239	AC008761.2	+	lncRNA	chr19	17712136	17799008	UNC13A	-	protein_coding	709	opposite	804_ID	chr19	17724531	17725239	709	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	41	43
11688	ENST00000624255.1_1	ENST00000335473.12_4	chr22	26152284	26152636	AL022329.3	-	lncRNA	chr22	26138154	26427011	MYO18B	+	protein_coding	352	opposite	4485_ID	chr22	26152285	26152636	352	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	43
11818	ENST00000633779.1_1	ENST00000373827.6_3	chr10	61899669	61900635	AL592430.2	+	lncRNA	chr10	61788158	62493248	ANK3	-	protein_coding	966	opposite	5813_ID	chr10	61899670	61900635	966	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	43
12713	ENST00000661767.1_1	ENST00000251076.9_4	chr15	51747464	51752750	AC066613.1	+	lncRNA	chr15	51739907	51915030	DMXL2	-	protein_coding	5315	opposite	2372_ID	chr15	51747465	51752750	5286	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	34	43
12737	ENST00000662219.1_1	ENST00000525539.5_5	chr16	81185424	81187581	AC092718.9	+	lncRNA	chr16	81134727	81253975	PKD1L2	-	polymorphic_pseudogene	2157	opposite	3135_ID	chr16	81185425	81187581	2157	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	26	43
157	ENST00000260843.5_4	ENST00000474524.5_2	chr3	151011873	151034608	GPR87	-	protein_coding	chr3	150804675	151154860	MED12L	+	protein_coding	22735	opposite	7170_ID	chr3	151011874	151034608	22735	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	42
378	ENST00000309170.8_4	ENST00000474524.5_2	chr3	150929904	150996330	P2RY14	-	protein_coding	chr3	150804675	151154860	MED12L	+	protein_coding	66426	opposite	9490_ID	chr3	150929905	150996330	66426	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	42
379	ENST00000309180.6_4	ENST00000474524.5_2	chr3	150915618	150921003	GPR171	-	protein_coding	chr3	150804675	151154860	MED12L	+	protein_coding	5385	opposite	7158_ID	chr3	150915619	150921003	5385	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	42
507	ENST00000325602.6_4	ENST00000474524.5_2	chr3	151044099	151047337	P2RY13	-	protein_coding	chr3	150804675	151154860	MED12L	+	protein_coding	3238	opposite	9489_ID	chr3	151044100	151047337	3238	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	42
720	ENST00000359450.6_2	ENST00000527372.7_5	chr17	27400538	27405875	TIAF1	-	protein_coding	chr17	27398139	27507416	MYO18A	-	protein_coding	5337	same	12694_ID	chr17	27400539	27405875	5337	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	42	42
1051	ENST00000363705.1	ENST00000371158.6_2	chr1	62282090	62282194	RNU6-414P	+	snRNA	chr1	62208148	62629592	PATJ	+	protein_coding	104	same	11219_ID	chr1	62282091	62282194	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	42
1951	ENST00000384709.1	ENST00000553700.5_5	chr14	31612144	31612254	RNU6-541P	+	snRNA	chr14	31569323	31677010	HECTD1	-	protein_coding	110	opposite	11324_ID	chr14	31612145	31612254	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	42
2061	ENST00000384903.1	ENST00000262873.12_4	chr20	33578178	33578300	MIR499A	+	miRNA	chr20	33563205	33590240	MYH7B	+	protein_coding	122	same	8803_ID	chr20	33578179	33578300	122	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	42
2401	ENST00000391058.1	ENST00000371158.6_2	chr1	62318170	62318274	RNU6-1177P	+	snRNA	chr1	62208148	62629592	PATJ	+	protein_coding	104	same	10881_ID	chr1	62318171	62318274	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	42
2656	ENST00000408108.1	ENST00000265709.13_5	chr8	41517958	41518026	MIR486	+	miRNA	chr8	41510743	41754280	ANK1	-	protein_coding	68	opposite	8792_ID	chr8	41517959	41518026	68	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	42	42
2761	ENST00000408385.1	ENST00000503581.6_5	chr6	65684285	65684385	AL109922.1	+	miRNA	chr6	64429875	66417119	EYS	-	protein_coding	100	opposite	4711_ID	chr6	65684286	65684385	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	42
3942	ENST00000429530.1_1	ENST00000503581.6_5	chr6	64516728	64532535	SCAT8	+	lncRNA	chr6	64429875	66417119	EYS	-	protein_coding	15807	opposite	12002_ID	chr6	64516729	64532535	15807	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	36	42
4160	ENST00000435608.1_3	ENST00000333229.6_5	chr21	40589018	40591731	BRWD1-IT1	-	lncRNA	chr21	40556101	40685745	BRWD1	-	protein_coding	2713	same	6432_ID	chr21	40589019	40591731	2713	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	30	42
5223	ENST00000465197.2	ENST00000265709.13_5	chr8	41697579	41697857	RN7SL149P	-	misc_RNA	chr8	41510743	41754280	ANK1	-	protein_coding	278	same	9978_ID	chr8	41697580	41697857	278	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	42
5243	ENST00000466769.2	ENST00000371158.6_2	chr1	62538119	62538411	RN7SL180P	+	misc_RNA	chr1	62208148	62629592	PATJ	+	protein_coding	292	same	9998_ID	chr1	62538120	62538411	292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	31	42
6508	ENST00000516799.1	ENST00000525539.5_5	chr16	81140137	81140244	RNU6-1191P	-	snRNA	chr16	81134727	81253975	PKD1L2	-	polymorphic_pseudogene	107	same	10894_ID	chr16	81140138	81140244	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	42	42
8008	ENST00000563810.1_1	ENST00000265709.13_5	chr8	41685682	41687452	AC027702.1	-	lncRNA	chr8	41510743	41754280	ANK1	-	protein_coding	1770	same	2230_ID	chr8	41685683	41687452	1770	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	42
8229	ENST00000568391.1_1	ENST00000356056.10_5	chr15	72264546	72332606	AC022872.1	+	lncRNA	chr15	72114631	72410491	MYO9A	-	protein_coding	79124	opposite	1910_ID	chr15	72264547	72332606	68060	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	42
9429	ENST00000582775.1	ENST00000503581.6_5	chr6	66176896	66176982	AL109612.1	-	miRNA	chr6	64429875	66417119	EYS	-	protein_coding	86	same	4695_ID	chr6	66176897	66176982	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	42
9769	ENST00000584654.1	ENST00000371158.6_2	chr1	62544457	62544531	MIR3116-1	+	miRNA	chr1	62208148	62629592	PATJ	+	protein_coding	74	same	8235_ID	chr1	62544458	62544531	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	31	42
10201	ENST00000595563.1_3	ENST00000425460.6_3	chr19	50813278	50813796	AC008655.1	-	lncRNA	chr19	50706878	50813797	MYH14	+	protein_coding	518	opposite	764_ID	chr19	50813279	50813796	518	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	42	42
10943	ENST00000608767.1_1	ENST00000333229.6_5	chr21	40556394	40556825	AF129408.1	+	lncRNA	chr21	40556101	40685745	BRWD1	-	protein_coding	431	opposite	4390_ID	chr21	40556395	40556825	431	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	42	42
12931	ENST00000666451.1_1	ENST00000474524.5_2	chr3	151011104	151013282	AC078816.1	+	lncRNA	chr3	150804675	151154860	MED12L	+	protein_coding	59551	same	2588_ID	chr3	151011105	151013282	2178	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	42
1339	ENST00000365255.1	ENST00000264951.8_4	chr3	142139046	142139211	RNU1-100P	-	snRNA	chr3	142025448	142166904	XRN1	-	protein_coding	165	same	10549_ID	chr3	142139047	142139211	165	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	41
3016	ENST00000410162.1	ENST00000356056.10_5	chr15	72337523	72337708	RNU2-65P	+	snRNA	chr15	72114631	72410491	MYO9A	-	protein_coding	185	opposite	10650_ID	chr15	72337524	72337708	185	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	41
3070	ENST00000410412.1	ENST00000675453.1_1	chr2	230759061	230759169	RNU6-613P	+	snRNA	chr2	230628552	230786725	TRIP12	-	protein_coding	108	opposite	11381_ID	chr2	230759062	230759169	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	41
3150	ENST00000410751.1	ENST00000265379.10_2	chr3	130088069	130088187	AC093004.1	-	miRNA	chr3	130064358	130203688	COL6A5	+	protein_coding	118	opposite	3179_ID	chr3	130088070	130088187	118	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	41
4543	ENST00000446475.1_3	ENST00000651438.1_2	chr21	46827300	46829980	COL18A1-AS2	-	lncRNA	chr21	46825079	46933634	COL18A1	+	protein_coding	2680	opposite	6687_ID	chr21	46827301	46829980	2680	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	41
4656	ENST00000449838.2_4	ENST00000356458.7_2	chr2	54974239	54977610	EML6-AS1	-	lncRNA	chr2	54950635	55199154	EML6	+	protein_coding	3371	opposite	6905_ID	chr2	54974240	54977610	3371	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	41
5197	ENST00000463482.2	ENST00000347230.9_6	chr14	68217946	68218261	RN7SL213P	-	misc_RNA	chr14	68213238	68283307	ZFYVE26	-	protein_coding	315	same	10024_ID	chr14	68217947	68218261	315	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	40	41
5449	ENST00000479993.2	ENST00000379980.8_4	chr17	8450234	8450526	RN7SL129P	-	misc_RNA	chr17	8377524	8534079	MYH10	-	protein_coding	292	same	9964_ID	chr17	8450235	8450526	292	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	41
5520	ENST00000485206.1_3	ENST00000651438.1_2	chr21	46839630	46844985	COL18A1-AS1	-	lncRNA	chr21	46825079	46933634	COL18A1	+	protein_coding	5355	opposite	6686_ID	chr21	46839631	46844985	5355	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	41
5569	ENST00000488827.2	ENST00000642696.1_2	chr22	32153187	32153482	RN7SL20P	+	misc_RNA	chr22	32149986	32304019	DEPDC5	+	protein_coding	295	same	10021_ID	chr22	32153188	32153482	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	41
6234	ENST00000515995.1	ENST00000264951.8_4	chr3	142126498	142126579	RNU6-1294P	-	snRNA	chr3	142025448	142166904	XRN1	-	protein_coding	81	same	10988_ID	chr3	142126499	142126579	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	41
6425	ENST00000516554.1	ENST00000379980.8_4	chr17	8414442	8414506	RNU7-43P	+	snRNA	chr17	8377524	8534079	MYH10	-	protein_coding	64	opposite	11781_ID	chr17	8414443	8414506	64	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	41
6474	ENST00000516698.1	ENST00000356458.7_2	chr2	55077425	55077489	RNU7-81P	+	snRNA	chr2	54950635	55199154	EML6	+	protein_coding	64	same	11812_ID	chr2	55077426	55077489	64	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	41
6622	ENST00000517100.1	ENST00000642696.1_2	chr22	32233223	32233284	RNU6-201P	+	snRNA	chr22	32149986	32304019	DEPDC5	+	protein_coding	61	same	11070_ID	chr22	32233224	32233284	61	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	41
6759	ENST00000518567.1_3	ENST00000522917.5_2	chr8	124996377	125053023	FER1L6-AS1	-	lncRNA	chr8	124864226	125132302	FER1L6	+	protein_coding	56646	opposite	7012_ID	chr8	124996378	125053023	56646	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	41
6862	ENST00000522005.1_3	ENST00000522917.5_2	chr8	125048250	125052709	AC100871.2	-	lncRNA	chr8	124864226	125132302	FER1L6	+	protein_coding	4459	opposite	3445_ID	chr8	125048251	125052709	4459	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	41
8361	ENST00000573609.2_3	ENST00000549091.5_1	chr16	704610	706194	AL022341.2	-	lncRNA	chr16	699324	717833	WDR90	+	protein_coding	1584	opposite	4486_ID	chr16	704611	706194	1584	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	41
8435	ENST00000577048.1_1	ENST00000300036.6_5	chr16	15835007	15835648	AF001548.1	+	lncRNA	chr16	15796991	15950885	MYH11	-	protein_coding	641	opposite	4363_ID	chr16	15835008	15835648	641	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	21	41
8662	ENST00000578410.1	ENST00000534366.5_1	chr8	145210800	145210892	AC104592.1	-	miRNA	chr8	145203547	145316712	MROH1	+	protein_coding	92	opposite	3562_ID	chr8	145210801	145210892	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	41
9325	ENST00000582196.1_1	ENST00000527372.7_5	chr17	27467500	27482507	AC024619.3	+	lncRNA	chr17	27398139	27507416	MYO18A	-	protein_coding	15007	opposite	2032_ID	chr17	27467501	27482507	15007	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	41
9960	ENST00000587106.6_3	ENST00000334268.9_6	chr6	123710565	123792904	TRDN-AS1	+	lncRNA	chr6	123537483	123958095	TRDN	-	protein_coding	120827	opposite	12774_ID	chr6	123710566	123792904	82339	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	41
12026	ENST00000647792.1_3	ENST00000356458.7_2	chr2	54995628	55028677	AC104781.1	-	lncRNA	chr2	54950635	55199154	EML6	+	protein_coding	33049	opposite	3570_ID	chr2	54995629	55028677	33049	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	41
12093	ENST00000648704.1_1	ENST00000334268.9_6	chr6	123840841	123878815	AL445259.1	+	lncRNA	chr6	123537483	123958095	TRDN	-	protein_coding	37974	opposite	5620_ID	chr6	123840842	123878815	37974	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	41
12815	ENST00000663925.1_1	ENST00000216181.11_5	chr22	36731465	36739575	Z82215.1	+	lncRNA	chr22	36677325	36784012	MYH9	-	protein_coding	8110	opposite	12943_ID	chr22	36731466	36739575	8110	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	41
57451	ENST00000501075.2_1	ENST00000643335.1_3	chr12	6687787	6693905	AC006064.2	+	lncRNA	chr12	6679349	6717596	CHD4	-	protein_coding	6118	opposite	411_ID	chr12	6687788	6693905	6118	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	27	41
116961	ENST00000624419.2_2	ENST00000621744.4_2	chr1	145209152	145282078	NOTCH2NLR	+	protein_coding	chr1	145209144	145365380	AC242842.3	+	protein_coding	72926	same	9280_ID	chr1	145209153	145282078	72926	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	41
83721	ENST00000574212.1_1	ENST00000300036.6_5	chr16	15820530	15826850	AF001548.2	+	lncRNA	chr16	15796991	15950885	MYH11	-	protein_coding	6320	opposite	4365_ID	chr16	15820531	15826850	6320	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	27	41
2308	ENST00000390226.1	ENST00000368194.8_4	chr1	156905922	156906036	MIR765	-	miRNA	chr1	156904631	157015534	ARHGEF11	-	protein_coding	114	same	9084_ID	chr1	156905923	156906036	114	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	40	40
2664	ENST00000408125.1	ENST00000261839.12_4	chr15	52569313	52569397	MIR1266	-	miRNA	chr15	52484518	52588001	MYO5C	-	protein_coding	84	same	8022_ID	chr15	52569314	52569397	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	40
2794	ENST00000408474.1	ENST00000610776.4_6	chr7	128546824	128546943	AC025594.1	+	miRNA	chr7	128516918	128550773	KCP	-	protein_coding	119	opposite	2102_ID	chr7	128546825	128546943	119	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	40
5125	ENST00000459535.1	ENST00000186436.10_4	chr2	98529516	98529580	RNU7-96P	-	snRNA	chr2	98372798	98612411	TMEM131	-	protein_coding	64	same	11822_ID	chr2	98529517	98529580	64	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	40
5692	ENST00000497704.2	ENST00000368194.8_4	chr1	156955548	156955841	RN7SL612P	-	misc_RNA	chr1	156904631	157015534	ARHGEF11	-	protein_coding	293	same	10304_ID	chr1	156955549	156955841	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	40
5733	ENST00000500590.1_3	ENST00000515773.5_1	chr6	43181538	43191598	AL133375.1	-	lncRNA	chr6	43149921	43192325	CUL9	+	retained_intron	10060	opposite	4850_ID	chr6	43181539	43191598	10060	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	28	40
6863	ENST00000522087.1_3	ENST00000522917.5_2	chr8	124936998	124938173	AC090753.1	-	lncRNA	chr8	124864226	125132302	FER1L6	+	protein_coding	1175	opposite	2935_ID	chr8	124936999	124938173	1175	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	40
6915	ENST00000523661.1_1	ENST00000524189.6_4	chr8	28968089	28998198	AC108449.1	+	lncRNA	chr8	28924794	29120587	KIF13B	-	protein_coding	30157	opposite	3731_ID	chr8	28968090	28998198	30109	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	40
6991	ENST00000526901.1_3	ENST00000288368.5_2	chr8	68994438	69007316	AC011853.2	-	lncRNA	chr8	68864280	69149267	PREX2	+	protein_coding	12878	opposite	1304_ID	chr8	68994439	69007316	12878	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	40
7191	ENST00000533659.1_1	ENST00000256190.12_3	chr11	9860689	9950810	AC011092.2	+	lncRNA	chr11	9800213	10315754	SBF2	-	protein_coding	90121	opposite	1175_ID	chr11	9860690	9950810	90121	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	40
7481	ENST00000549103.1_3	ENST00000397909.7_2	chr12	78445960	78485517	AC073571.1	-	lncRNA	chr12	78224673	78606790	NAV3	+	protein_coding	39557	opposite	2532_ID	chr12	78445961	78485517	39557	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	40
7706	ENST00000557368.1_1	ENST00000355349.4_4	chr14	23884547	23884895	AL132855.1	+	lncRNA	chr14	23881948	23904869	MYH7	-	protein_coding	348	opposite	4816_ID	chr14	23884548	23884895	348	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	35	40
7854	ENST00000560714.1_1	ENST00000524189.6_4	chr8	28924795	28925971	AC108449.3	+	lncRNA	chr8	28924794	29120587	KIF13B	-	protein_coding	1176	opposite	3733_ID	chr8	28924796	28925971	1176	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	40	40
8549	ENST00000577743.1_1	ENST00000418404.8_6	chr17	10223708	10244775	AC005291.1	+	lncRNA	chr17	10204181	10276447	MYH13	-	protein_coding	21067	opposite	268_ID	chr17	10223709	10244775	21067	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	40
9108	ENST00000580933.1	ENST00000259253.11_2	chr2	128879654	128879963	RN7SL206P	+	misc_RNA	chr2	128848773	128953251	UGGT1	+	protein_coding	309	same	10020_ID	chr2	128879655	128879963	309	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	40
9361	ENST00000582364.1	ENST00000216181.11_5	chr22	36711988	36712246	RN7SL349P	-	misc_RNA	chr22	36677325	36784012	MYH9	-	protein_coding	258	same	10121_ID	chr22	36711989	36712246	258	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	40
10185	ENST00000594810.3_2	ENST00000498707.5_5	chr3	64546997	64575814	ADAMTS9-AS1	+	lncRNA	chr3	64501329	64673676	ADAMTS9	-	protein_coding	31436	opposite	4351_ID	chr3	64546998	64575814	28817	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	29	40
10267	ENST00000597216.5_3	ENST00000595618.5_4	chr19	17263397	17278857	AC020913.1	-	lncRNA	chr19	17186590	17324104	MYO9B	+	protein_coding	15464	opposite	1753_ID	chr19	17263398	17278857	15460	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	40
10422	ENST00000601929.1_3	ENST00000595618.5_4	chr19	17317946	17318819	AC020913.2	-	lncRNA	chr19	17186590	17324104	MYO9B	+	protein_coding	873	opposite	1754_ID	chr19	17317947	17318819	873	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	35	40
11277	ENST00000614781.1_1	ENST00000245907.11_4	chr19	6716396	6717753	AC008760.2	-	lncRNA	chr19	6677714	6720661	C3	-	protein_coding	1357	same	803_ID	chr19	6716397	6717753	1357	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	40
12200	ENST00000650933.1_1	ENST00000371941.4_4	chr20	47273610	47275657	AL035106.1	+	lncRNA	chr20	47240789	47444536	PREX1	-	protein_coding	82375	opposite	4599_ID	chr20	47273611	47275657	2047	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	40
12756	ENST00000662667.1_1	ENST00000355123.9_4	chr2	24433518	24445070	AC009228.1	+	lncRNA	chr2	24425732	24583405	ITSN2	-	protein_coding	11552	opposite	919_ID	chr2	24433519	24445070	11552	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	30	40
12970	ENST00000667219.1_1	ENST00000256190.12_3	chr11	10004299	10021837	AC011092.3	+	lncRNA	chr11	9800213	10315754	SBF2	-	protein_coding	17538	opposite	1176_ID	chr11	10004300	10021837	17538	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	40
66781	ENST00000517228.1	ENST00000424296.6_3	chr6	109825589	109825729	AL109947.2	+	miRNA	chr6	109814058	110012415	AK9	-	protein_coding	140	opposite	4716_ID	chr6	109825590	109825729	140	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	35	40
980	ENST00000363350.1	ENST00000368559.7_4	chr1	154012391	154012498	RNU6-179P	-	snRNA	chr1	153965160	154127592	NUP210L	-	protein_coding	107	same	11054_ID	chr1	154012392	154012498	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	39
2480	ENST00000394019.6_3	ENST00000451608.2_5	chr2	74443368	74570534	SLC4A5	-	protein_coding	chr2	74438730	74590504	AC006030.1	-	nonsense_mediated_decay	127173	same	12099_ID	chr2	74443369	74570534	127166	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	39
2570	ENST00000401172.1	ENST00000355349.4_4	chr14	23887195	23887272	MIR208B	-	miRNA	chr14	23881948	23904869	MYH7	-	protein_coding	77	same	8170_ID	chr14	23887196	23887272	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	39
3140	ENST00000410699.2	ENST00000398978.8_3	chr10	71572450	71572541	AC025426.1	+	miRNA	chr10	71561661	71718900	COL13A1	+	protein_coding	91	same	2085_ID	chr10	71572451	71572541	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	39
3856	ENST00000426818.1_3	ENST00000454679.7_3	chr10	19579151	19580409	AL590378.1	-	lncRNA	chr10	19337729	20023407	MALRD1	+	protein_coding	1258	opposite	5762_ID	chr10	19579152	19580409	1258	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	39
4293	ENST00000439234.5_1	ENST00000356860.8_5	chr7	81638492	81659271	CACNA2D1-AS1	+	lncRNA	chr7	81575759	82073093	CACNA2D1	-	protein_coding	20779	opposite	6534_ID	chr7	81638493	81659271	20779	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	39
4731	ENST00000451713.5_3	ENST00000454679.7_3	chr10	19999256	20017479	AL157895.1	-	lncRNA	chr10	19337729	20023407	MALRD1	+	protein_coding	18223	opposite	5084_ID	chr10	19999257	20017479	18223	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	38	39
6288	ENST00000516160.2	ENST00000275034.5_4	chr6	79671212	79671289	AL356776.1	-	miRNA	chr6	79644135	79787971	PHIP	-	protein_coding	77	same	5402_ID	chr6	79671213	79671289	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	31	39
6298	ENST00000516180.2	ENST00000676513.1_1	chr10	104020986	104021063	AL160011.1	+	miRNA	chr10	104005127	104142639	GBF1	+	protein_coding	77	same	5130_ID	chr10	104020987	104021063	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	39
6495	ENST00000516759.1	ENST00000256190.12_3	chr11	9865361	9865423	RNU7-28P	-	snRNA	chr11	9800213	10315754	SBF2	-	protein_coding	62	same	11770_ID	chr11	9865362	9865423	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	39
7168	ENST00000532735.1_1	ENST00000256190.12_3	chr11	10170738	10186656	AC100763.1	+	lncRNA	chr11	9800213	10315754	SBF2	-	protein_coding	15918	opposite	3404_ID	chr11	10170739	10186656	15918	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	39
7652	ENST00000555862.1_3	ENST00000636465.1_6	chr12	25249801	25253914	AC023510.1	-	lncRNA	chr12	25157275	25261169	IRAG2	+	protein_coding	4113	opposite	1959_ID	chr12	25249802	25253914	4113	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	32	39
7737	ENST00000558237.1_1	ENST00000646667.1_5	chr15	50849797	50852697	AC084756.1	+	lncRNA	chr15	50849354	50978994	TRPM7	-	protein_coding	2900	opposite	2750_ID	chr15	50849798	50852697	2900	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	39	39
8523	ENST00000577643.1	ENST00000368559.7_4	chr1	154076996	154077068	MIR5698	-	miRNA	chr1	153965160	154127592	NUP210L	-	protein_coding	72	same	8970_ID	chr1	154076997	154077068	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	39
8567	ENST00000577814.1_1	ENST00000528896.7_4	chr17	26960264	26962968	AC005726.2	+	lncRNA	chr17	26941463	26972176	KIAA0100	-	protein_coding	2745	opposite	341_ID	chr17	26960265	26962968	2704	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	39
8582	ENST00000577914.1_1	ENST00000263710.8_5	chr2	122287997	122290281	AC012447.1	+	lncRNA	chr2	122095351	122407052	CLASP1	-	protein_coding	2284	opposite	1386_ID	chr2	122287998	122290281	2284	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	39
9008	ENST00000580451.1	ENST00000398978.8_3	chr10	71618969	71619055	AL138925.1	-	miRNA	chr10	71561661	71718900	COL13A1	+	protein_coding	86	opposite	4985_ID	chr10	71618970	71619055	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	39
9119	ENST00000580972.1	ENST00000263710.8_5	chr2	122288456	122288583	RNU4ATAC	+	snRNA	chr2	122095351	122407052	CLASP1	-	protein_coding	127	opposite	10719_ID	chr2	122288457	122288583	127	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	39
9374	ENST00000582428.1	ENST00000524189.6_4	chr8	29000209	29000484	RN7SL781P	+	misc_RNA	chr8	28924794	29120587	KIF13B	-	protein_coding	275	opposite	10428_ID	chr8	29000210	29000484	275	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	39
9896	ENST00000585373.5_4	ENST00000230538.12_5	chr6	112475966	112487678	Z99289.1	+	lncRNA	chr6	112429133	112575769	LAMA4	-	protein_coding	11712	opposite	12985_ID	chr6	112475967	112487678	11712	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	39
10084	ENST00000591362.1_3	ENST00000285039.12_4	chr18	47496090	47497327	AC091044.1	-	lncRNA	chr18	47349158	47721517	MYO5B	-	protein_coding	1237	same	2968_ID	chr18	47496091	47497327	1237	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	39
10183	ENST00000594678.1_3	ENST00000595618.5_4	chr19	17288319	17289285	AC020913.3	-	lncRNA	chr19	17186590	17324104	MYO9B	+	protein_coding	966	opposite	1755_ID	chr19	17288320	17289285	966	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	39
10261	ENST00000597045.1_3	ENST00000595618.5_4	chr19	17206227	17210117	AC020908.3	-	lncRNA	chr19	17186590	17324104	MYO9B	+	protein_coding	3890	opposite	1748_ID	chr19	17206228	17210117	3890	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	39
10278	ENST00000597497.5_3	ENST00000400960.7_4	chr1	207726067	207779900	AL137789.1	-	lncRNA	chr1	207669491	207815110	CR1	+	protein_coding	54631	opposite	4956_ID	chr1	207726068	207779900	53833	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	39
11602	ENST00000622162.1_1	ENST00000636465.1_6	chr12	25256057	25256803	AC023510.2	-	lncRNA	chr12	25157275	25261169	IRAG2	+	protein_coding	746	opposite	1960_ID	chr12	25256058	25256803	746	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	35	39
12180	ENST00000650511.1_1	ENST00000269081.8_3	chr17	67238370	67240238	AC005495.1	+	lncRNA	chr17	67144147	67240987	ABCA10	-	protein_coding	1868	opposite	298_ID	chr17	67238371	67240238	1868	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	39
13214	ENST00000676296.1_1	ENST00000646667.1_5	chr15	50940998	50978914	AC084756.2	-	protein_coding	chr15	50849354	50978994	TRPM7	-	protein_coding	37916	same	2751_ID	chr15	50940999	50978914	37916	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	39
130741	ENST00000669165.1_1	ENST00000649772.1_4	chr3	113122834	113152837	CFAP44-AS1	+	lncRNA	chr3	113080747	113233998	AC112128.1	-	nonsense_mediated_decay	30005	opposite	6627_ID	chr3	113122835	113152837	30003	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	21	39
192	ENST00000269394.4_4	ENST00000355528.9_3	chr17	80787309	80797898	ZNF750	-	protein_coding	chr17	80709940	80903790	TBCD	+	protein_coding	10589	opposite	13069_ID	chr17	80787310	80797898	10589	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	38
465	ENST00000320431.8_3	ENST00000457726.5_1	chr3	49754261	49757117	AMIGO3	-	protein_coding	chr3	49726976	49758960	RNF123	+	nonsense_mediated_decay	2856	opposite	5938_ID	chr3	49754262	49757117	2856	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	35	38
810	ENST00000362287.1	ENST00000405093.9_5	chr14	23857798	23857881	MIR208A	-	miRNA	chr14	23851195	23877482	MYH6	-	protein_coding	83	same	8169_ID	chr14	23857799	23857881	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	29	38
1092	ENST00000363922.1	ENST00000382751.4_4	chr21	33749495	33749631	SNORA80	-	snoRNA	chr21	33683328	33765321	URB1	-	protein_coding	136	same	12213_ID	chr21	33749496	33749631	136	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	38
1350	ENST00000365347.1	ENST00000360774.6_7	chr9	77414810	77415138	RN7SKP47	+	misc_RNA	chr9	77337410	77502837	TRPM6	-	protein_coding	328	opposite	9899_ID	chr9	77414811	77415138	328	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	38
1817	ENST00000384317.1	ENST00000230538.12_5	chr6	112517641	112517748	RNU6-1226P	-	snRNA	chr6	112429133	112575769	LAMA4	-	protein_coding	107	same	10926_ID	chr6	112517642	112517748	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	38
1883	ENST00000384521.1	ENST00000429845.6_3	chr3	27307070	27307174	RNU6-342P	-	snRNA	chr3	27152394	27410883	NEK10	-	protein_coding	104	same	11168_ID	chr3	27307071	27307174	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	38
2047	ENST00000384880.1	ENST00000674475.1_2	chr10	29833932	29834026	MIR604	-	miRNA	chr10	29746289	30025888	SVIL	-	protein_coding	94	same	9005_ID	chr10	29833933	29834026	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	38
2578	ENST00000401216.1	ENST00000674475.1_2	chr10	29891192	29891275	MIR938	-	miRNA	chr10	29746289	30025888	SVIL	-	protein_coding	83	same	9114_ID	chr10	29891193	29891275	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	38
2606	ENST00000401314.1	ENST00000616140.2_5	chr8	145619363	145619445	MIR939	-	miRNA	chr8	145618445	145634719	CPSF1	-	protein_coding	82	same	9115_ID	chr8	145619364	145619445	82	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	34	38
2735	ENST00000408335.1	ENST00000356860.8_5	chr7	81919392	81919478	AC005159.1	+	miRNA	chr7	81575759	82073093	CACNA2D1	-	protein_coding	86	opposite	244_ID	chr7	81919393	81919478	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	38
2873	ENST00000408646.1	ENST00000429845.6_3	chr3	27404056	27404149	AC099535.1	-	miRNA	chr3	27152394	27410883	NEK10	-	protein_coding	93	same	3376_ID	chr3	27404057	27404149	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	38
3015	ENST00000410160.1	ENST00000674475.1_2	chr10	30000843	30000937	RNU6-908P	+	snRNA	chr10	29746289	30025888	SVIL	-	protein_coding	94	opposite	11603_ID	chr10	30000844	30000937	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	38
4089	ENST00000433475.1_3	ENST00000615901.4_2	chr2	54743184	54767834	SPTBN1-AS1	-	lncRNA	chr2	54683453	54898582	SPTBN1	+	protein_coding	24650	opposite	12539_ID	chr2	54743185	54767834	24650	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	38
5315	ENST00000471265.1_3	ENST00000474759.6_4	chr3	54908631	54935282	CACNA2D3-AS1	-	lncRNA	chr3	54156578	55108584	CACNA2D3	+	protein_coding	26651	opposite	6535_ID	chr3	54908632	54935282	26651	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	38
5638	ENST00000493105.2	ENST00000382751.4_4	chr21	33714825	33715062	RN7SL109P	-	misc_RNA	chr21	33683328	33765321	URB1	-	protein_coding	237	same	9944_ID	chr21	33714826	33715062	237	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	38
6359	ENST00000516350.1	ENST00000360774.6_7	chr9	77462421	77462517	RNY4P1	+	misc_RNA	chr9	77337410	77502837	TRPM6	-	protein_coding	96	opposite	11845_ID	chr9	77462422	77462517	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	38
6376	ENST00000516405.1	ENST00000451608.2_5	chr2	74546525	74546628	RNU6-542P	+	snRNA	chr2	74438730	74590504	AC006030.1	-	nonsense_mediated_decay	103	opposite	11326_ID	chr2	74546526	74546628	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	38
6560	ENST00000516949.1	ENST00000360774.6_7	chr9	77472590	77472697	RNU6-445P	+	snRNA	chr9	77337410	77502837	TRPM6	-	protein_coding	107	opposite	11250_ID	chr9	77472591	77472697	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	38
6676	ENST00000517235.1	ENST00000400960.7_4	chr1	207688629	207688688	AL691452.1	+	miRNA	chr1	207669491	207815110	CR1	+	protein_coding	59	same	5885_ID	chr1	207688630	207688688	59	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	38
6869	ENST00000522264.1_1	ENST00000357250.11_4	chr6	70932460	70951859	AL160262.1	+	lncRNA	chr6	70925828	71012787	COL9A1	-	protein_coding	19399	opposite	5135_ID	chr6	70932461	70951859	19399	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	30	38
6982	ENST00000526642.1_3	ENST00000360655.8_4	chr11	20141229	20142178	NAV2-AS1	-	lncRNA	chr11	19372270	20143144	NAV2	+	protein_coding	949	opposite	9229_ID	chr11	20141230	20142178	949	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	38	38
7195	ENST00000533767.1_3	ENST00000360655.8_4	chr11	20065391	20070849	NAV2-AS2	-	lncRNA	chr11	19372270	20143144	NAV2	+	protein_coding	5458	opposite	9230_ID	chr11	20065392	20070849	5458	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	38
7301	ENST00000539874.1_1	ENST00000261200.8_5	chr12	21980143	22040891	AC008250.1	+	lncRNA	chr12	21950334	22089608	ABCC9	-	protein_coding	60748	opposite	714_ID	chr12	21980144	22040891	60748	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	38
8241	ENST00000568648.1_1	ENST00000566029.5_4	chr16	53202433	53203362	AC007906.1	+	lncRNA	chr16	53088944	53363062	CHD9	+	protein_coding	929	same	665_ID	chr16	53202434	53203362	929	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	38
8317	ENST00000571113.1_1	ENST00000355528.9_3	chr17	80876157	80876661	AC087222.1	+	lncRNA	chr17	80709940	80903790	TBCD	+	protein_coding	504	same	2784_ID	chr17	80876158	80876661	504	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	38
8432	ENST00000576836.1_3	ENST00000355528.9_3	chr17	80753361	80753971	AC068014.1	-	lncRNA	chr17	80709940	80903790	TBCD	+	protein_coding	18142	opposite	2385_ID	chr17	80753362	80753971	610	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	38
8720	ENST00000578755.1	ENST00000355528.9_3	chr17	80736352	80736450	AC068014.2	-	miRNA	chr17	80709940	80903790	TBCD	+	protein_coding	98	opposite	2386_ID	chr17	80736353	80736450	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	38
9207	ENST00000581569.1	ENST00000284425.7_4	chr17	67095682	67095797	MIR4524B	+	miRNA	chr17	67074842	67138036	ABCA6	-	protein_coding	115	opposite	8606_ID	chr17	67095683	67095797	115	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	38
9705	ENST00000584278.1	ENST00000245838.13_5	chrX	122844693	122844982	RN7SL29P	+	misc_RNA	chrX	122734419	122866902	THOC2	-	protein_coding	289	opposite	10089_ID	chrX	122844694	122844982	289	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	38
10191	ENST00000595134.1_1	ENST00000388925.8_3	chr19	17119998	17124270	AC020908.2	+	lncRNA	chr19	17003762	17137625	CPAMD8	-	protein_coding	4272	opposite	1747_ID	chr19	17119999	17124270	4272	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	38
10565	ENST00000603682.1_1	ENST00000230538.12_5	chr6	112538840	112540771	Z99289.2	-	lncRNA	chr6	112429133	112575769	LAMA4	-	protein_coding	1931	same	12986_ID	chr6	112538841	112540771	1931	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	38
10636	ENST00000605586.1_1	ENST00000230538.12_5	chr6	112555365	112555959	Z99289.3	-	lncRNA	chr6	112429133	112575769	LAMA4	-	protein_coding	594	same	12987_ID	chr6	112555366	112555959	594	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	38
11760	ENST00000628368.1_1	ENST00000430249.7_2	chr2	211482294	211484600	CPS1-IT1	+	lncRNA	chr2	211342405	211543829	CPS1	+	protein_coding	2306	same	6701_ID	chr2	211482295	211484600	2306	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	38
12777	ENST00000663110.1_3	ENST00000262215.8_4	chr8	68225277	68226872	AC021321.2	-	lncRNA	chr8	68109892	68256016	ARFGEF1	-	protein_coding	1595	same	1786_ID	chr8	68225278	68226872	1595	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	38
85361	ENST00000577670.1	ENST00000394196.9_2	chr15	93447628	93447705	MIR3175	+	miRNA	chr15	93443553	93571226	CHD2	+	protein_coding	77	same	8294_ID	chr15	93447629	93447705	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	38
107841	ENST00000607121.5_1	ENST00000360963.7_4	chr3	50402804	50405628	Z84492.1	+	lncRNA	chr3	50400232	50541675	CACNA2D2	-	protein_coding	2864	opposite	12950_ID	chr3	50402805	50405628	2824	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	24	38
128791	ENST00000664982.1_1	ENST00000504764.5_4	chr2	160653798	160654554	AC009961.3	-	lncRNA	chr2	160628361	160761221	LY75-CD302	-	protein_coding	756	same	1013_ID	chr2	160653799	160654554	756	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	34	38
851	ENST00000362566.1	ENST00000646647.2_4	chr14	21860308	21860412	SNORD9	-	snoRNA	chr14	21853357	21924282	CHD8	-	protein_coding	104	same	12459_ID	chr14	21860309	21860412	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	34	37
973	ENST00000363313.1	ENST00000301180.10_2	chr12	51050755	51050861	RNU6-238P	+	snRNA	chr12	50898767	51142440	DIP2B	+	protein_coding	106	same	11093_ID	chr12	51050756	51050861	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	37
1089	ENST00000363915.1	ENST00000646647.2_4	chr14	21865450	21865560	SNORD8	-	snoRNA	chr14	21853357	21924282	CHD8	-	protein_coding	110	same	12448_ID	chr14	21865451	21865560	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	37
1118	ENST00000364054.1	ENST00000260665.12_4	chr2	44119828	44119935	RNU6-1048P	+	snRNA	chr2	44113362	44223128	LRPPRC	-	protein_coding	107	opposite	10792_ID	chr2	44119829	44119935	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	36	37
1259	ENST00000364802.1	ENST00000638012.2_2	chr14	101402827	101402902	SNORD113-4	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	75	same	12240_ID	chr14	101402828	101402902	75	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	37
1354	ENST00000365369.1	ENST00000417564.3_3	chr21	47945530	47945635	RNU6-396P	+	snRNA	chr21	47878803	47989928	DIP2A	+	protein_coding	105	same	11203_ID	chr21	47945531	47945635	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	37
1839	ENST00000384407.1	ENST00000301180.10_2	chr12	51027055	51027159	RNU6-769P	+	snRNA	chr12	50898767	51142440	DIP2B	+	protein_coding	104	same	11489_ID	chr12	51027056	51027159	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	37
2256	ENST00000385298.1	ENST00000357060.8_6	chr10	105978546	105978641	MIR609	-	miRNA	chr10	105889645	105992122	CFAP43	-	protein_coding	95	same	9010_ID	chr10	105978547	105978641	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	37
2594	ENST00000401271.1	ENST00000356994.7_5	chr8	144895126	144895212	MIR937	-	miRNA	chr8	144873094	144897943	SCRIB	-	protein_coding	86	same	9113_ID	chr8	144895127	144895212	86	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	37
2971	ENST00000408875.1	ENST00000616140.2_5	chr8	145625475	145625559	MIR1234	-	miRNA	chr8	145618445	145634719	CPSF1	-	protein_coding	84	same	7993_ID	chr8	145625476	145625559	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	37
3835	ENST00000425723.2_1	ENST00000280886.12_4	chr10	483500	487110	AL669841.1	+	lncRNA	chr10	320140	735608	DIP2C	-	protein_coding	3610	opposite	5878_ID	chr10	483501	487110	3610	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	37
3928	ENST00000429191.1_1	ENST00000374434.4_4	chr1	24393263	24410055	MYOM3-AS1	+	lncRNA	chr1	24382530	24438625	MYOM3	-	protein_coding	16792	opposite	9213_ID	chr1	24393264	24410055	16792	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	37
4005	ENST00000431130.2_3	ENST00000615901.4_2	chr2	54772504	54773814	AC092839.1	-	lncRNA	chr2	54683453	54898582	SPTBN1	+	protein_coding	1310	opposite	3159_ID	chr2	54772505	54773814	1310	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	37
4409	ENST00000442434.1_1	ENST00000417564.3_3	chr21	47882383	47889219	DIP2A-IT1	+	lncRNA	chr21	47878803	47989928	DIP2A	+	protein_coding	6836	same	6804_ID	chr21	47882384	47889219	6836	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	37
5123	ENST00000459505.1	ENST00000674117.1_4	chr9	78527368	78527465	AL359253.1	+	miRNA	chr9	78505588	78977891	PCSK5	+	protein_coding	97	same	5480_ID	chr9	78527369	78527465	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	37
5363	ENST00000473849.2	ENST00000533211.6_3	chr11	66480191	66480480	RN7SL12P	-	misc_RNA	chr11	66449967	66496687	SPTBN2	-	protein_coding	289	same	9965_ID	chr11	66480192	66480480	289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	37
5637	ENST00000493075.1_4	ENST00000474759.6_4	chr3	54952359	55001115	LRTM1	-	protein_coding	chr3	54156578	55108584	CACNA2D3	+	protein_coding	48858	opposite	7876_ID	chr3	54952360	55001115	48756	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	37
6111	ENST00000513378.1_3	ENST00000359106.10_2	chr17	48640563	48641144	AC021491.3	-	lncRNA	chr17	48638075	48704835	CACNA1G	+	protein_coding	581	opposite	1790_ID	chr17	48640564	48641144	581	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	37
6422	ENST00000516544.1	ENST00000356443.9_5	chr18	3093565	3093627	RNU7-25P	+	snRNA	chr18	3066804	3219966	MYOM1	-	protein_coding	62	opposite	11769_ID	chr18	3093566	3093627	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	37
6579	ENST00000516995.1	ENST00000405975.6_5	chr2	43635445	43635551	RNU6-958P	+	snRNA	chr2	43457974	43823185	THADA	-	protein_coding	106	opposite	11635_ID	chr2	43635446	43635551	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	37
6647	ENST00000517165.1	ENST00000361961.7_5	chr12	39836849	39836918	AC121334.1	-	miRNA	chr12	39687030	39837192	KIF21A	-	protein_coding	69	same	3970_ID	chr12	39836850	39836918	69	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	37
7037	ENST00000528204.1_1	ENST00000360655.8_4	chr11	19402030	19406561	NAV2-IT1	+	lncRNA	chr11	19372270	20143144	NAV2	+	protein_coding	4531	same	9234_ID	chr11	19402031	19406561	4531	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	37
7053	ENST00000528726.1_3	ENST00000360655.8_4	chr11	19524218	19528776	NAV2-AS5	-	lncRNA	chr11	19372270	20143144	NAV2	+	protein_coding	4558	opposite	9233_ID	chr11	19524219	19528776	4558	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	37
7173	ENST00000532874.1_3	ENST00000360655.8_4	chr11	19532436	19541443	NAV2-AS4	-	lncRNA	chr11	19372270	20143144	NAV2	+	protein_coding	9007	opposite	9232_ID	chr11	19532437	19541443	9007	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	37
7206	ENST00000534036.1_3	ENST00000360655.8_4	chr11	20000244	20002883	NAV2-AS3	-	lncRNA	chr11	19372270	20143144	NAV2	+	protein_coding	2639	opposite	9231_ID	chr11	20000245	20002883	2639	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	37
7218	ENST00000534670.1_3	ENST00000423902.7_2	chr8	61721293	61722165	AC113143.1	-	lncRNA	chr8	61591298	61780587	CHD7	+	protein_coding	872	opposite	3835_ID	chr8	61721294	61722165	872	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	37
7779	ENST00000558980.1_3	ENST00000394518.7_2	chr15	86162853	86214179	AC087286.2	-	lncRNA	chr15	85923833	86292586	AKAP13	+	protein_coding	51326	opposite	2798_ID	chr15	86162854	86214179	51326	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	37
7849	ENST00000560578.1_3	ENST00000268182.10_2	chr15	90936721	90941113	AC018946.1	-	lncRNA	chr15	90931473	91045471	IQGAP1	+	protein_coding	4392	opposite	1679_ID	chr15	90936722	90941113	4392	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	37
7876	ENST00000561409.1_3	ENST00000394518.7_2	chr15	86122276	86123409	AC087286.3	-	lncRNA	chr15	85923833	86292586	AKAP13	+	protein_coding	1133	opposite	2799_ID	chr15	86122277	86123409	1133	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	7	37
7877	ENST00000561417.1_3	ENST00000394518.7_2	chr15	86269345	86270458	AC021739.3	-	lncRNA	chr15	85923833	86292586	AKAP13	+	protein_coding	1113	opposite	1803_ID	chr15	86269346	86270458	1113	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	27	37
8645	ENST00000578325.1	ENST00000360655.8_4	chr11	19596856	19596919	MIR4486	+	miRNA	chr11	19372270	20143144	NAV2	+	protein_coding	63	same	8571_ID	chr11	19596857	19596919	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	37
8681	ENST00000578534.1	ENST00000360655.8_4	chr11	19781549	19781629	MIR4694	-	miRNA	chr11	19372270	20143144	NAV2	+	protein_coding	80	opposite	8680_ID	chr11	19781550	19781629	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	37
8846	ENST00000579524.1	ENST00000280886.12_4	chr10	323123	323248	AL603831.1	+	miRNA	chr10	320140	735608	DIP2C	-	protein_coding	125	opposite	5831_ID	chr10	323124	323248	125	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	37	37
8919	ENST00000579920.1	ENST00000388925.8_3	chr19	17018271	17018531	RN7SL835P	+	misc_RNA	chr19	17003762	17137625	CPAMD8	-	protein_coding	260	opposite	10467_ID	chr19	17018272	17018531	260	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	37
9143	ENST00000581117.1_3	ENST00000665241.1_3	chr18	14816149	14825248	AP006565.1	-	lncRNA	chr18	14748238	14854037	ANKRD30B	+	protein_coding	9099	opposite	6317_ID	chr18	14816150	14825248	9099	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	26	37
9563	ENST00000583516.1_3	ENST00000474759.6_4	chr3	54666148	54673884	ESRG	-	lncRNA	chr3	54156578	55108584	CACNA2D3	+	protein_coding	7736	opposite	6934_ID	chr3	54666149	54673884	7736	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	37
9595	ENST00000583681.1	ENST00000646647.2_4	chr14	21897668	21897965	RN7SL650P	-	misc_RNA	chr14	21853357	21924282	CHD8	-	protein_coding	297	same	10336_ID	chr14	21897669	21897965	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	37
9808	ENST00000584886.1	ENST00000388925.8_3	chr19	17021302	17021594	RN7SL823P	-	misc_RNA	chr19	17003762	17137625	CPAMD8	-	protein_coding	292	same	10462_ID	chr19	17021303	17021594	292	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	37
10554	ENST00000603468.1_1	ENST00000360655.8_4	chr11	19732479	19734165	AC009549.1	-	lncRNA	chr11	19372270	20143144	NAV2	+	protein_coding	1686	opposite	971_ID	chr11	19732480	19734165	1686	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	37
11028	ENST00000609724.1_1	ENST00000503292.6_5	chr4	15565320	15565876	AC116651.1	-	lncRNA	chr4	15471494	15603172	CC2D2A	+	protein_coding	556	opposite	3916_ID	chr4	15565321	15565876	556	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	37
11296	ENST00000615261.1_1	ENST00000261200.8_5	chr12	21981293	21981498	AC008250.2	-	lncRNA	chr12	21950334	22089608	ABCC9	-	protein_coding	205	same	715_ID	chr12	21981294	21981498	205	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	29	37
12647	ENST00000660212.1_3	ENST00000262113.9_3	chr8	2078537	2082867	AC245164.2	-	lncRNA	chr8	1993160	2093380	MYOM2	+	protein_coding	4330	opposite	4308_ID	chr8	2078538	2082867	4330	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	33	37
845	ENST00000362520.1	ENST00000638012.2_2	chr14	101429390	101429467	SNORD114-7	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	77	same	12280_ID	chr14	101429391	101429467	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	36
868	ENST00000362705.1	ENST00000638012.2_2	chr14	101416169	101416241	SNORD114-1	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12252_ID	chr14	101416170	101416241	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	36
870	ENST00000362723.1	ENST00000638012.2_2	chr14	101438439	101438514	SNORD114-14	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	75	same	12257_ID	chr14	101438440	101438514	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	36
902	ENST00000362897.1	ENST00000381655.7_2	chr13	26091256	26091363	RNU6-78P	+	snRNA	chr13	25946111	26599989	ATP8A2	+	protein_coding	107	same	11501_ID	chr13	26091257	26091363	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	36
910	ENST00000362928.1	ENST00000638012.2_2	chr14	101421706	101421776	SNORD114-5	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	70	same	12278_ID	chr14	101421707	101421776	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	36
927	ENST00000363044.1	ENST00000638012.2_2	chr14	101439931	101440001	SNORD114-16	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	70	same	12259_ID	chr14	101439932	101440001	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	29	36
931	ENST00000363072.1	ENST00000638012.2_2	chr14	101442813	101442888	SNORD114-19	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	75	same	12262_ID	chr14	101442814	101442888	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	31	36
991	ENST00000363409.1	ENST00000638012.2_2	chr14	101433388	101433460	SNORD114-10	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12253_ID	chr14	101433389	101433460	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	36
1018	ENST00000363536.1	ENST00000638012.2_2	chr14	101450212	101450284	SNORD114-23	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12267_ID	chr14	101450213	101450284	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	34	36
1055	ENST00000363738.1	ENST00000638012.2_2	chr14	101434447	101434522	SNORD114-11	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	75	same	12254_ID	chr14	101434448	101434522	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	36
1056	ENST00000363742.1	ENST00000638012.2_2	chr14	101452393	101452465	SNORD114-25	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12269_ID	chr14	101452394	101452465	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	36	36
1064	ENST00000363775.1	ENST00000665241.1_3	chr18	14759186	14759293	RNU6-1210P	+	snRNA	chr18	14748238	14854037	ANKRD30B	+	protein_coding	107	same	10914_ID	chr18	14759187	14759293	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	36
1102	ENST00000363953.1	ENST00000638012.2_2	chr14	101418192	101418270	SNORD114-2	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	78	same	12263_ID	chr14	101418193	101418270	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	36
1106	ENST00000363962.1	ENST00000638012.2_2	chr14	101420710	101420785	SNORD114-4	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	75	same	12277_ID	chr14	101420711	101420785	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	36
1171	ENST00000364370.1	ENST00000638012.2_2	chr14	101432365	101432437	SNORD114-9	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12281_ID	chr14	101432366	101432437	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	36
1173	ENST00000364377.1	ENST00000638012.2_2	chr14	101436215	101436289	SNORD114-13	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	74	same	12256_ID	chr14	101436216	101436289	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	36
1174	ENST00000364393.1	ENST00000638012.2_2	chr14	101423502	101423574	SNORD114-6	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12279_ID	chr14	101423503	101423574	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	36
1182	ENST00000364424.1	ENST00000252032.9_3	chr20	3340682	3340789	RNU6-1019P	+	snRNA	chr20	3229950	3388272	C20orf194	-	protein_coding	107	opposite	10769_ID	chr20	3340683	3340789	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	36
1232	ENST00000364687.1	ENST00000638012.2_2	chr14	101439006	101439078	SNORD114-15	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12258_ID	chr14	101439007	101439078	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	29	36
1234	ENST00000364699.1	ENST00000638012.2_2	chr14	101441142	101441217	SNORD114-17	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	75	same	12260_ID	chr14	101441143	101441217	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	36
1296	ENST00000364969.1	ENST00000638012.2_2	chr14	101419685	101419760	SNORD114-3	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	75	same	12274_ID	chr14	101419686	101419760	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	36
1301	ENST00000365029.1	ENST00000638012.2_2	chr14	101451113	101451185	SNORD114-24	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12268_ID	chr14	101451114	101451185	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	35	36
1325	ENST00000365178.1	ENST00000638012.2_2	chr14	101447340	101447412	SNORD114-20	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12264_ID	chr14	101447341	101447412	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	32	36
1328	ENST00000365211.1	ENST00000394518.7_2	chr15	86194752	86194859	RNU6-1280P	-	snRNA	chr15	85923833	86292586	AKAP13	+	protein_coding	107	opposite	10974_ID	chr15	86194753	86194859	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	36
1340	ENST00000365272.1	ENST00000638012.2_2	chr14	101442161	101442233	SNORD114-18	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12261_ID	chr14	101442162	101442233	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	31	36
1362	ENST00000365400.1	ENST00000638012.2_2	chr14	101435284	101435359	SNORD114-12	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	75	same	12255_ID	chr14	101435285	101435359	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	36
1364	ENST00000365423.1	ENST00000638012.2_2	chr14	101449262	101449334	SNORD114-22	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12266_ID	chr14	101449263	101449334	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	33	36
1626	ENST00000381489.6_4	ENST00000280886.12_4	chr10	696016	715521	PRR26	+	lncRNA	chr10	320140	735608	DIP2C	-	protein_coding	19634	opposite	9653_ID	chr10	696017	715521	19505	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	36
1731	ENST00000384069.1	ENST00000602533.6_2	chr10	37424164	37424271	RNU6-811P	+	snRNA	chr10	37414652	37673039	ANKRD30A	+	protein_coding	107	same	11519_ID	chr10	37424165	37424271	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	36
1971	ENST00000384759.1	ENST00000329474.7_2	chr6	25383826	25383930	RNU6-987P	+	snRNA	chr6	25279601	25620758	CARMIL1	+	protein_coding	104	same	11655_ID	chr6	25383827	25383930	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	36
2103	ENST00000384999.1	ENST00000504154.6_5	chr4	20529897	20530007	MIR218-1	+	miRNA	chr4	20253527	20622184	SLIT2	+	protein_coding	110	same	8189_ID	chr4	20529898	20530007	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	36
2133	ENST00000385042.1	ENST00000356575.9_4	chr1	3477258	3477354	MIR551A	-	miRNA	chr1	3404514	3528072	MEGF6	-	protein_coding	96	same	8925_ID	chr1	3477259	3477354	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	36
2770	ENST00000408410.1	ENST00000301831.9_4	chr3	41690746	41690828	AC099537.1	+	miRNA	chr3	41288089	42003595	ULK4	-	protein_coding	82	opposite	3377_ID	chr3	41690747	41690828	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	36
3196	ENST00000411010.1	ENST00000301831.9_4	chr3	41808106	41808411	RN7SKP58	-	misc_RNA	chr3	41288089	42003595	ULK4	-	protein_coding	305	same	9909_ID	chr3	41808107	41808411	305	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	36
3235	ENST00000411226.1	ENST00000381655.7_2	chr13	26524841	26524959	RNY1P3	-	misc_RNA	chr13	25946111	26599989	ATP8A2	+	protein_coding	118	opposite	11832_ID	chr13	26524842	26524959	118	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	33	36
3609	ENST00000420020.5_1	ENST00000392782.5_6	chr2	160242877	160261143	AC008277.1	+	lncRNA	chr2	160175489	160473080	BAZ2B	-	protein_coding	18270	opposite	719_ID	chr2	160242878	160261143	18266	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	36
4097	ENST00000433837.1_1	ENST00000366769.7_5	chr1	227179840	227180907	AL353689.2	+	lncRNA	chr1	227177565	227506175	CDC42BPA	-	protein_coding	1067	opposite	5251_ID	chr1	227179841	227180907	1067	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	36	36
4177	ENST00000436077.1_1	ENST00000602533.6_2	chr10	37529814	37530977	AL157387.1	+	lncRNA	chr10	37414652	37673039	ANKRD30A	+	protein_coding	1163	same	5054_ID	chr10	37529815	37530977	1163	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	36	36
4457	ENST00000444093.1_1	ENST00000263119.10_3	chr22	24497651	24499317	AC253536.3	+	lncRNA	chr22	24407753	24574596	CABIN1	+	protein_coding	1666	same	4316_ID	chr22	24497652	24499317	1666	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	36
4718	ENST00000451601.1_1	ENST00000280886.12_4	chr10	674577	677195	AL358216.1	+	lncRNA	chr10	320140	735608	DIP2C	-	protein_coding	2618	opposite	5448_ID	chr10	674578	677195	2618	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	36
4806	ENST00000453914.1_3	ENST00000397527.6_6	chr20	34064027	34078808	CEP250-AS1	-	lncRNA	chr20	34043418	34107108	CEP250	+	protein_coding	14781	opposite	6622_ID	chr20	34064028	34078808	14781	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	36
5121	ENST00000459491.1	ENST00000356031.8_4	chr5	35633064	35633126	RNU7-130P	-	snRNA	chr5	35617964	35814713	SPEF2	+	protein_coding	62	opposite	11717_ID	chr5	35633065	35633126	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	36
5307	ENST00000470784.2	ENST00000280886.12_4	chr10	476180	476444	RN7SL754P	-	misc_RNA	chr10	320140	735608	DIP2C	-	protein_coding	264	same	10409_ID	chr10	476181	476444	264	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	36
5479	ENST00000482473.2	ENST00000381655.7_2	chr13	26518631	26518891	RN7SL741P	+	misc_RNA	chr13	25946111	26599989	ATP8A2	+	protein_coding	260	same	10397_ID	chr13	26518632	26518891	260	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	33	36
5598	ENST00000490735.2	ENST00000602533.6_2	chr10	37586325	37586615	RN7SL314P	+	misc_RNA	chr10	37414652	37673039	ANKRD30A	+	protein_coding	290	same	10098_ID	chr10	37586326	37586615	290	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	36	36
5756	ENST00000502188.1_3	ENST00000359428.10_4	chr9	134065296	134069592	AL157938.3	-	lncRNA	chr9	134000972	134110050	NUP214	+	protein_coding	4296	opposite	5089_ID	chr9	134065297	134069592	4296	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	27	36
5896	ENST00000506717.1_3	ENST00000513042.6_2	chr5	73073863	73082316	AC091868.2	-	lncRNA	chr5	72921982	73237817	ARHGEF28	+	protein_coding	8453	opposite	3018_ID	chr5	73073864	73082316	8453	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	36
6192	ENST00000515882.2_2	ENST00000504154.6_5	chr4	20393776	20396479	SLIT2-IT1	+	lncRNA	chr4	20253527	20622184	SLIT2	+	protein_coding	2703	same	12113_ID	chr4	20393777	20396479	2703	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	36
6254	ENST00000516060.1	ENST00000379068.8_4	chrX	24762557	24762687	SCARNA23	+	snoRNA	chrX	24712034	25015103	POLA1	+	protein_coding	130	same	11995_ID	chrX	24762558	24762687	130	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	36
6263	ENST00000516082.1	ENST00000394518.7_2	chr15	85933053	85933115	RNU7-79P	-	snRNA	chr15	85923833	86292586	AKAP13	+	protein_coding	62	opposite	11808_ID	chr15	85933054	85933115	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	36
6659	ENST00000517208.1	ENST00000329474.7_2	chr6	25408122	25408199	AL160037.1	+	miRNA	chr6	25279601	25620758	CARMIL1	+	protein_coding	77	same	5131_ID	chr6	25408123	25408199	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	36
6883	ENST00000522615.1_1	ENST00000519560.6_5	chr5	168133571	168147889	SLIT3-AS2	+	lncRNA	chr5	168088744	168728143	SLIT3	-	protein_coding	14318	opposite	12115_ID	chr5	168133572	168147889	14318	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	24	36
7060	ENST00000528872.1_1	ENST00000597505.5_5	chr11	31327231	31336095	AL137804.1	+	lncRNA	chr11	30900130	31349827	DCDC1	-	protein_coding	8864	opposite	4958_ID	chr11	31327232	31336095	8864	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	36
7615	ENST00000554552.1_1	ENST00000261978.9_5	chr14	75018883	75026751	AC013451.1	+	lncRNA	chr14	74964885	75078940	LTBP2	-	protein_coding	7868	opposite	1443_ID	chr14	75018884	75026751	7868	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	36
7768	ENST00000558757.1_1	ENST00000394518.7_2	chr15	86244339	86246002	AC087286.4	+	lncRNA	chr15	85923833	86292586	AKAP13	+	protein_coding	1663	same	2800_ID	chr15	86244340	86246002	1663	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	36
7777	ENST00000558967.1_1	ENST00000648947.1_5	chr15	41309004	41316740	INO80-AS1	+	lncRNA	chr15	41271077	41408478	INO80	-	protein_coding	11087	opposite	7358_ID	chr15	41309005	41316740	7736	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	26	36
7852	ENST00000560712.1_3	ENST00000394518.7_2	chr15	86164494	86170920	AC087286.1	-	lncRNA	chr15	85923833	86292586	AKAP13	+	protein_coding	6426	opposite	2796_ID	chr15	86164495	86170920	6426	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	36
8446	ENST00000577230.1	ENST00000379068.8_4	chrX	24716238	24716308	AC004655.1	+	miRNA	chrX	24712034	25015103	POLA1	+	protein_coding	70	same	148_ID	chrX	24716239	24716308	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	36
8457	ENST00000577303.1	ENST00000381655.7_2	chr13	26027136	26027428	RN7SL289P	-	misc_RNA	chr13	25946111	26599989	ATP8A2	+	protein_coding	292	opposite	10083_ID	chr13	26027137	26027428	292	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	36
8730	ENST00000578819.1_3	ENST00000314616.11_2	chr17	26997071	26999822	AC010761.3	-	lncRNA	chr17	26989222	27029697	SUPT6H	+	protein_coding	2751	opposite	1140_ID	chr17	26997072	26999822	2751	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	36
8741	ENST00000578903.1	ENST00000280886.12_4	chr10	687628	687718	MIR5699	-	miRNA	chr10	320140	735608	DIP2C	-	protein_coding	90	same	8971_ID	chr10	687629	687718	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	36
8809	ENST00000579337.1	ENST00000665241.1_3	chr18	14771247	14771326	AP006564.1	+	miRNA	chr18	14748238	14854037	ANKRD30B	+	protein_coding	79	same	6316_ID	chr18	14771248	14771326	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	36
9140	ENST00000581101.1	ENST00000665241.1_3	chr18	14830164	14830241	MIR3156-2	+	miRNA	chr18	14748238	14854037	ANKRD30B	+	protein_coding	77	same	8278_ID	chr18	14830165	14830241	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	36
9438	ENST00000582816.1	ENST00000381668.9_6	chr4	42448006	42448089	AC084010.1	+	miRNA	chr4	42410389	42659122	ATP8A1	-	protein_coding	83	opposite	2728_ID	chr4	42448007	42448089	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	31	36
9460	ENST00000582912.1	ENST00000252032.9_3	chr20	3261064	3261355	RN7SL839P	+	misc_RNA	chr20	3229950	3388272	C20orf194	-	protein_coding	291	opposite	10470_ID	chr20	3261065	3261355	291	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	36
9878	ENST00000585239.1	ENST00000399151.3_1	chr21	37585857	37586136	RN7SL73P	-	misc_RNA	chr21	37536832	37666572	DOP1B	+	protein_coding	279	opposite	10394_ID	chr21	37585858	37586136	279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	36
9961	ENST00000587264.5_4	ENST00000359428.10_4	chr9	134008238	134042892	AL157938.2	-	lncRNA	chr9	134000972	134110050	NUP214	+	protein_coding	34654	opposite	5088_ID	chr9	134008239	134042892	34654	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	36
10703	ENST00000606412.1	ENST00000638012.2_2	chr14	101448311	101448383	SNORD114-21	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12265_ID	chr14	101448312	101448383	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	32	36
11500	ENST00000620124.1_1	ENST00000373233.8_4	chr20	40114210	40114865	AL031667.3	-	lncRNA	chr20	40030722	40247016	CHD6	-	protein_coding	655	same	4541_ID	chr20	40114211	40114865	655	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	36
12380	ENST00000655100.1_1	ENST00000366769.7_5	chr1	227311595	227320095	AL353689.3	+	lncRNA	chr1	227177565	227506175	CDC42BPA	-	protein_coding	8500	opposite	5252_ID	chr1	227311596	227320095	8500	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	36
12724	ENST00000661959.1_3	ENST00000304743.7_5	chr14	71412356	71425746	AC004825.3	-	lncRNA	chr14	71374175	71582099	PCNX1	+	protein_coding	13390	opposite	173_ID	chr14	71412357	71425746	13390	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	36
13031	ENST00000668721.1_3	ENST00000280663.12_3	chr12	1910027	1916652	AC005343.7	+	lncRNA	chr12	1901128	2027832	CACNA2D4	-	retained_intron	6625	opposite	283_ID	chr12	1910028	1916652	6625	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	30	36
13070	ENST00000669265.1_1	ENST00000266058.9_4	chr10	98862528	98864112	SLIT1-AS1	+	lncRNA	chr10	98757794	98945716	SLIT1	-	protein_coding	1600	opposite	12112_ID	chr10	98862529	98864112	1584	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	36
27461	ENST00000408342.1	ENST00000529487.3_5	chr9	100125835	100125963	MIR1302-8	-	miRNA	chr9	100069940	100141033	CCDC180	+	protein_coding	128	opposite	8073_ID	chr9	100125836	100125963	128	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	36
297	ENST00000296641.5_6	ENST00000274364.11_3	chr5	75911306	75919228	F2RL2	-	protein_coding	chr5	75699109	76003957	IQGAP2	+	protein_coding	7932	opposite	6951_ID	chr5	75911307	75919228	7922	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	35
1967	ENST00000384734.1	ENST00000397944.8_5	chr6	146960835	146960905	RNU6-734P	+	snRNA	chr6	146920107	147136598	ADGB	+	protein_coding	70	same	11464_ID	chr6	146960836	146960905	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	35
2050	ENST00000384887.1	ENST00000519560.6_5	chr5	168690604	168690698	MIR585	-	miRNA	chr5	168088744	168728143	SLIT3	-	protein_coding	94	same	8989_ID	chr5	168690605	168690698	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	35
2108	ENST00000385006.1	ENST00000519560.6_5	chr5	168195150	168195260	MIR218-2	-	miRNA	chr5	168088744	168728143	SLIT3	-	protein_coding	110	same	8190_ID	chr5	168195151	168195260	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	35
2898	ENST00000408702.1	ENST00000597505.5_5	chr11	31227305	31227441	AL162614.1	+	miRNA	chr11	30900130	31349827	DCDC1	-	protein_coding	136	opposite	5213_ID	chr11	31227306	31227441	136	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	35
3134	ENST00000410678.1	ENST00000614616.5_3	chr5	98225434	98225537	RNU6-402P	+	snRNA	chr5	98189688	98264711	CHD1	-	protein_coding	103	opposite	11211_ID	chr5	98225435	98225537	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	35
3782	ENST00000424451.1_1	ENST00000366769.7_5	chr1	227366033	227371145	AL451047.1	+	lncRNA	chr1	227177565	227506175	CDC42BPA	-	protein_coding	5112	opposite	5666_ID	chr1	227366034	227371145	5112	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	35
4297	ENST00000439299.1_3	ENST00000356711.7_3	chr13	109816249	109853831	MYO16-AS1	-	lncRNA	chr13	109248499	109860345	MYO16	+	protein_coding	37582	opposite	9207_ID	chr13	109816250	109853831	37582	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	33	35
4670	ENST00000450426.7_5	ENST00000650807.1_2	chr7	74103197	74143200	AC211433.1	-	lncRNA	chr7	74064570	74175022	GTF2I	+	protein_coding	40142	opposite	4247_ID	chr7	74103198	74143200	40003	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	35
5035	ENST00000459020.1	ENST00000513042.6_2	chr5	73123836	73123898	RNU7-196P	-	snRNA	chr5	72921982	73237817	ARHGEF28	+	protein_coding	62	opposite	11760_ID	chr5	73123837	73123898	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	35
5201	ENST00000463779.2	ENST00000324093.9_3	chr3	129310191	129310488	RN7SL752P	+	misc_RNA	chr3	129274056	129325519	PLXND1	-	protein_coding	297	opposite	10408_ID	chr3	129310192	129310488	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	35
5532	ENST00000485467.2	ENST00000409874.9_2	chr14	104479978	104480268	RN7SL634P	+	misc_RNA	chr14	104394792	104519004	TDRD9	+	protein_coding	290	same	10324_ID	chr14	104479979	104480268	290	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	35
6034	ENST00000511327.1_3	ENST00000274364.11_3	chr5	75902432	75904795	AC026725.1	-	lncRNA	chr5	75699109	76003957	IQGAP2	+	protein_coding	2363	opposite	2166_ID	chr5	75902433	75904795	2363	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	35
6039	ENST00000511447.5_1	ENST00000519560.6_5	chr5	168440252	168463475	SLIT3-AS1	+	lncRNA	chr5	168088744	168728143	SLIT3	-	protein_coding	24772	opposite	12114_ID	chr5	168440253	168463475	23223	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	35
6157	ENST00000514811.1_1	ENST00000519560.6_5	chr5	168420004	168422682	AC011389.1	+	lncRNA	chr5	168088744	168728143	SLIT3	-	protein_coding	2678	opposite	1204_ID	chr5	168420005	168422682	2678	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	35
6287	ENST00000516159.1	ENST00000597505.5_5	chr11	31195470	31195552	AL133376.1	+	miRNA	chr11	30900130	31349827	DCDC1	-	protein_coding	82	opposite	4851_ID	chr11	31195471	31195552	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	35
6357	ENST00000516347.1	ENST00000369981.7_4	chr6	76477775	76477875	RNU6-155P	-	snRNA	chr6	76458908	76629254	MYO6	+	protein_coding	100	opposite	11037_ID	chr6	76477776	76477875	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	35
6513	ENST00000516813.1	ENST00000359428.10_4	chr9	134002376	134002478	RNU6-881P	+	snRNA	chr9	134000972	134110050	NUP214	+	protein_coding	102	same	11580_ID	chr9	134002377	134002478	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	35
7143	ENST00000531710.1_1	ENST00000534548.7_7	chr11	134048718	134056061	AP001775.2	+	lncRNA	chr11	134020007	134093861	NCAPD3	-	protein_coding	7343	opposite	6160_ID	chr11	134048719	134056061	7343	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	35
7357	ENST00000543818.5_1	ENST00000280663.12_3	chr12	1929432	1945918	LRTM2	+	protein_coding	chr12	1901128	2027832	CACNA2D4	-	retained_intron	16487	opposite	7877_ID	chr12	1929433	1945918	16486	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	35
7529	ENST00000551713.1_3	ENST00000393630.8_4	chr12	62876128	62878712	AC079035.1	-	lncRNA	chr12	62860605	62994256	MON2	+	protein_coding	2584	opposite	2617_ID	chr12	62876129	62878712	2584	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	35
7730	ENST00000558101.1_1	ENST00000648947.1_5	chr15	41303794	41305498	AC020661.2	+	lncRNA	chr15	41271077	41408478	INO80	-	protein_coding	1704	opposite	1723_ID	chr15	41303795	41305498	1704	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	35
7875	ENST00000561388.1_1	ENST00000648947.1_5	chr15	41291471	41297063	AC020661.3	+	lncRNA	chr15	41271077	41408478	INO80	-	protein_coding	5592	opposite	1724_ID	chr15	41291472	41297063	5592	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	35
8043	ENST00000564700.1_3	ENST00000348261.11_3	chr16	1256559	1257124	AC120498.6	-	lncRNA	chr16	1203105	1271768	CACNA1H	+	protein_coding	565	opposite	3965_ID	chr16	1256560	1257124	565	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	35
8495	ENST00000577502.1	ENST00000164024.5_4	chr3	48681626	48681713	MIR4793	-	miRNA	chr3	48673895	48700319	CELSR3	-	protein_coding	87	same	8778_ID	chr3	48681627	48681713	87	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	27	35
9028	ENST00000580575.1	ENST00000409874.9_2	chr14	104447134	104447220	AL136001.1	-	miRNA	chr14	104394792	104519004	TDRD9	+	protein_coding	86	opposite	4886_ID	chr14	104447135	104447220	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	35
11707	ENST00000624853.1_1	ENST00000648947.1_5	chr15	41309187	41311041	AC020661.4	-	lncRNA	chr15	41271077	41408478	INO80	-	protein_coding	1854	same	1725_ID	chr15	41309188	41311041	1854	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	35
11733	ENST00000625968.2_4	ENST00000408978.9_3	chr2	171197705	171265074	MYO3B-AS1	-	lncRNA	chr2	171034656	171511677	MYO3B	+	protein_coding	76480	opposite	9210_ID	chr2	171197706	171265074	67369	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	35
12042	ENST00000648118.1_3	ENST00000409874.9_2	chr14	104406762	104408898	RD3L	-	processed_transcript	chr14	104394792	104519004	TDRD9	+	protein_coding	2136	opposite	9727_ID	chr14	104406763	104408898	2136	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	35
12519	ENST00000657874.1_1	ENST00000507142.6_7	chr4	170493478	170497602	AC084724.1	+	lncRNA	chr4	170313959	170533734	NEK1	-	protein_coding	4124	opposite	2749_ID	chr4	170493479	170497602	4124	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	35
12520	ENST00000657898.1_1	ENST00000366769.7_5	chr1	227468149	227469668	AL627308.3	+	lncRNA	chr1	227177565	227506175	CDC42BPA	-	protein_coding	1519	opposite	5852_ID	chr1	227468150	227469668	1519	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	35
13063	ENST00000669165.1_1	ENST00000393845.9_5	chr3	113122834	113152837	CFAP44-AS1	+	lncRNA	chr3	113005776	113160340	CFAP44	-	protein_coding	30005	opposite	6628_ID	chr3	113122835	113152837	30003	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	35
76151	ENST00000554388.2_3	ENST00000643536.1_3	chr15	91509569	91531855	PRC1-AS1	+	lncRNA	chr15	91509419	91565796	AC068831.6	-	nonsense_mediated_decay	22286	opposite	9622_ID	chr15	91509570	91531855	22286	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	23	35
1324	ENST00000365164.1	ENST00000393630.8_4	chr12	62939361	62939459	RNU6-399P	-	snRNA	chr12	62860605	62994256	MON2	+	protein_coding	98	opposite	11207_ID	chr12	62939362	62939459	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	34
1914	ENST00000384595.1	ENST00000315596.15_3	chr13	33337575	33337690	RNY1P4	-	misc_RNA	chr13	33160588	33352157	PDS5B	+	protein_coding	115	opposite	11833_ID	chr13	33337576	33337690	115	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	34
3083	ENST00000410438.1	ENST00000358951.7_4	chr1	220373887	220374018	SNORA36B	-	snoRNA	chr1	220321634	220445795	RAB3GAP2	-	protein_coding	131	same	12170_ID	chr1	220373888	220374018	131	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	34
3340	ENST00000412809.1_3	ENST00000356711.7_3	chr13	109753608	109754267	MYO16-AS2	-	lncRNA	chr13	109248499	109860345	MYO16	+	protein_coding	659	opposite	9208_ID	chr13	109753609	109754267	659	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	34
5072	ENST00000459229.1	ENST00000447699.7_3	chr9	95054742	95054875	SNORA84	-	snoRNA	chr9	94972492	95056038	IARS1	-	nonsense_mediated_decay	133	same	12215_ID	chr9	95054743	95054875	133	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	34
5728	ENST00000500163.2_1	ENST00000359373.9_3	chr11	72411518	72416652	ARAP1-AS2	+	lncRNA	chr11	72396113	72504644	ARAP1	-	protein_coding	5134	opposite	6328_ID	chr11	72411519	72416652	5134	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	34
6259	ENST00000516071.1	ENST00000231498.8_4	chr5	37327236	37327298	RNU7-75P	+	snRNA	chr5	37288238	37371208	NUP155	-	protein_coding	62	opposite	11805_ID	chr5	37327237	37327298	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	34
6981	ENST00000526616.1_1	ENST00000646065.1_4	chr11	12325079	12329763	AC025300.1	+	lncRNA	chr11	12183702	12380026	MICAL2	+	protein_coding	41329	same	2079_ID	chr11	12325080	12329763	4684	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	29	34
7010	ENST00000527288.1_3	ENST00000646065.1_4	chr11	12282972	12284720	AC079329.1	-	lncRNA	chr11	12183702	12380026	MICAL2	+	protein_coding	1748	opposite	2644_ID	chr11	12282973	12284720	1748	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	34
7329	ENST00000542022.1_1	ENST00000359373.9_3	chr11	72396119	72404853	ARAP1-AS1	+	lncRNA	chr11	72396113	72504644	ARAP1	-	protein_coding	8734	opposite	6327_ID	chr11	72396120	72404853	8734	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	28	34
7778	ENST00000558979.1_3	ENST00000388948.8_3	chr15	101583920	101589661	AC090907.1	-	lncRNA	chr15	101459561	101618462	LRRK1	+	protein_coding	5741	opposite	2943_ID	chr15	101583921	101589661	5741	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	21	34
7997	ENST00000563593.1_3	ENST00000348261.11_3	chr16	1209547	1210176	AC120498.1	-	lncRNA	chr16	1203105	1271768	CACNA1H	+	protein_coding	629	opposite	3961_ID	chr16	1209548	1210176	629	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	34
8249	ENST00000568884.1_3	ENST00000348261.11_3	chr16	1206975	1207974	AC120498.3	-	lncRNA	chr16	1203105	1271768	CACNA1H	+	protein_coding	999	opposite	3964_ID	chr16	1206976	1207974	999	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	34
8324	ENST00000571591.1_3	ENST00000306801.8_2	chr17	78934565	78935513	AC127496.4	-	lncRNA	chr17	78518637	78940168	RPTOR	+	protein_coding	948	opposite	4037_ID	chr17	78934566	78935513	948	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	31	34
8407	ENST00000576032.1_3	ENST00000306801.8_2	chr17	78914217	78915833	AC127496.3	-	lncRNA	chr17	78518637	78940168	RPTOR	+	protein_coding	1616	opposite	4036_ID	chr17	78914218	78915833	1616	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	25	34
8669	ENST00000578459.1	ENST00000355703.3_1	chr11	65403780	65403840	MIR4690	+	miRNA	chr11	65383243	65404910	PCNX3	+	protein_coding	60	same	8675_ID	chr11	65403781	65403840	60	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	33	34
8978	ENST00000580317.1	ENST00000406427.6_6	chr9	140440199	140440285	AL365502.1	+	miRNA	chr9	140354403	140444854	PNPLA7	-	protein_coding	86	opposite	5546_ID	chr9	140440200	140440285	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	34
9982	ENST00000587831.1_3	ENST00000644737.1_5	chr19	11121592	11126687	AC011442.1	-	lncRNA	chr19	11071607	11173144	SMARCA4	+	protein_coding	5095	opposite	1209_ID	chr19	11121593	11126687	5095	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	34
10813	ENST00000607434.1_1	ENST00000422377.5_3	chr6	111630405	111634720	AL080317.2	+	lncRNA	chr6	111620233	111804918	REV3L	-	nonsense_mediated_decay	4315	opposite	4681_ID	chr6	111630406	111634720	4315	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	30	34
11289	ENST00000615051.1_1	ENST00000334414.11_4	chr12	70964748	70965220	AC083809.1	+	lncRNA	chr12	70909649	71031209	PTPRB	-	protein_coding	472	opposite	2713_ID	chr12	70964749	70965220	472	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	34
11857	ENST00000636216.1_5	ENST00000531445.3_8	chr4	6066703	6071889	AC092442.1	-	protein_coding	chr4	5958844	6202282	C4orf50	-	protein_coding	5186	same	3096_ID	chr4	6066704	6071889	5186	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	9	34
12166	ENST00000650179.1_3	ENST00000404816.7_5	chr2	33499531	33506328	AC019127.1	-	lncRNA	chr2	33172019	33624576	LTBP1	+	protein_coding	6797	opposite	1689_ID	chr2	33499532	33506328	6797	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	34
12673	ENST00000660891.1_3	ENST00000388948.8_3	chr15	101598851	101604109	AC090907.3	-	lncRNA	chr15	101459561	101618462	LRRK1	+	protein_coding	5258	opposite	2945_ID	chr15	101598852	101604109	5258	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	30	34
13066	ENST00000669205.1_1	ENST00000359373.9_3	chr11	72400694	72406866	AP003065.1	+	lncRNA	chr11	72396113	72504644	ARAP1	-	protein_coding	6172	opposite	6231_ID	chr11	72400695	72406866	6172	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	24	34
852	ENST00000362583.1	ENST00000424208.5_1	chr15	25436562	25436644	SNORD115-12	+	snoRNA	chr15	25426989	25467432	SNHG14	+	lncRNA	82	same	12285_ID	chr15	25436563	25436644	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	33
903	ENST00000362912.1	ENST00000424208.5_1	chr15	25430777	25430859	SNORD115-9	+	snoRNA	chr15	25426989	25467432	SNHG14	+	lncRNA	82	same	12325_ID	chr15	25430778	25430859	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	33
920	ENST00000362985.1	ENST00000376087.5_3	chr10	27377249	27377356	RNU6-490P	-	snRNA	chr10	27293044	27389423	ANKRD26	-	protein_coding	107	same	11279_ID	chr10	27377250	27377356	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	33
1033	ENST00000363616.1	ENST00000424208.5_1	chr15	25434560	25434642	SNORD115-11	+	snoRNA	chr15	25426989	25467432	SNHG14	+	lncRNA	82	same	12284_ID	chr15	25434561	25434642	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	33
1077	ENST00000363856.1	ENST00000424208.5_1	chr15	25429452	25429534	SNORD115-8	+	snoRNA	chr15	25426989	25467432	SNHG14	+	lncRNA	82	same	12324_ID	chr15	25429453	25429534	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	33
1149	ENST00000364256.1	ENST00000367742.7_1	chr1	171488954	171489052	RNU6-773P	-	snRNA	chr1	171454689	171562650	PRRC2C	+	protein_coding	98	opposite	11491_ID	chr1	171488955	171489052	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	33
1308	ENST00000365073.1	ENST00000424208.5_1	chr15	25432682	25432763	SNORD115-10	+	snoRNA	chr15	25426989	25467432	SNHG14	+	lncRNA	81	same	12283_ID	chr15	25432683	25432763	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	33
1800	ENST00000384275.1	ENST00000360304.8_4	chr3	123532923	123533054	SNORA5	+	snoRNA	chr3	123328895	123603179	MYLK	-	protein_coding	131	opposite	12179_ID	chr3	123532924	123533054	131	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	33
2328	ENST00000390708.1	ENST00000278550.12_4	chr11	79113065	79113153	MIR708	-	miRNA	chr11	78363873	79152074	TENM4	-	protein_coding	88	same	9075_ID	chr11	79113066	79113153	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	33
2592	ENST00000401266.1	ENST00000388781.8_5	chr7	107677290	107677381	AC005048.1	-	miRNA	chr7	107663997	107770806	LAMB4	-	protein_coding	91	same	228_ID	chr7	107677291	107677381	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	33
3052	ENST00000410355.1	ENST00000262518.9_4	chr16	30712657	30712756	RNU6-1043P	-	snRNA	chr16	30710491	30752730	SRCAP	+	protein_coding	99	opposite	10789_ID	chr16	30712658	30712756	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	33
3746	ENST00000423310.2_3	ENST00000300482.9_4	chr21	45834470	45845155	TRPM2-AS	-	lncRNA	chr21	45770045	45862964	TRPM2	+	protein_coding	10685	opposite	12795_ID	chr21	45834471	45845155	10685	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	22	33
3818	ENST00000425267.8_4	ENST00000371380.8_3	chr10	96038437	96046804	PLCE1-AS1	-	lncRNA	chr10	95753687	96092580	PLCE1	+	protein_coding	8798	opposite	9574_ID	chr10	96038438	96046804	8367	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	33
4304	ENST00000439501.1_1	ENST00000651671.1_3	chr9	139437332	139438287	AL592301.1	+	lncRNA	chr9	139388884	139440500	NOTCH1	-	protein_coding	955	opposite	5810_ID	chr9	139437333	139438287	955	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	33
4689	ENST00000450996.1_1	ENST00000646520.1_5	chr2	218843429	218857338	TNS1-AS1	+	lncRNA	chr2	218664310	218875144	TNS1	-	protein_coding	15041	opposite	12757_ID	chr2	218843430	218857338	13909	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	33
5160	ENST00000461095.2	ENST00000367742.7_1	chr1	171461549	171461858	RN7SL425P	+	misc_RNA	chr1	171454689	171562650	PRRC2C	+	protein_coding	309	same	10174_ID	chr1	171461550	171461858	309	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	33
6019	ENST00000510827.5_1	ENST00000360304.8_4	chr3	123408490	123411254	MYLK-AS2	+	lncRNA	chr3	123328895	123603179	MYLK	-	protein_coding	2764	opposite	9206_ID	chr3	123408491	123411254	2764	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	33
6384	ENST00000516430.1	ENST00000263881.8_6	chr2	39620662	39620759	RNU6-1185P	-	snRNA	chr2	39476406	39664426	MAP4K3	-	protein_coding	97	same	10887_ID	chr2	39620663	39620759	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	33
6987	ENST00000526741.1_1	ENST00000278550.12_4	chr11	78460294	78467525	AP002768.1	+	lncRNA	chr11	78363873	79152074	TENM4	-	protein_coding	7231	opposite	6201_ID	chr11	78460295	78467525	7231	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	33
7009	ENST00000527246.3_2	ENST00000251691.5_3	chr6	138537122	138539628	PBOV1	-	protein_coding	chr6	138483075	138665800	ARFGEF3	+	protein_coding	2506	opposite	9502_ID	chr6	138537123	138539628	2506	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	33
7016	ENST00000527440.1_1	ENST00000278550.12_4	chr11	78902602	78904205	AP001547.1	+	lncRNA	chr11	78363873	79152074	TENM4	-	protein_coding	1603	opposite	6144_ID	chr11	78902603	78904205	1603	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	33
7212	ENST00000534593.1_1	ENST00000278550.12_4	chr11	78804330	78809048	AP002957.1	+	lncRNA	chr11	78363873	79152074	TENM4	-	protein_coding	5156	opposite	6220_ID	chr11	78804331	78809048	4718	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	33
7484	ENST00000549161.5_1	ENST00000549396.6_4	chr12	81664453	81706090	PPFIA2-AS1	+	lncRNA	chr12	81651753	82153129	PPFIA2	-	protein_coding	41754	opposite	9610_ID	chr12	81664454	81706090	41637	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	23	33
8299	ENST00000570335.1_3	ENST00000306801.8_2	chr17	78775439	78779432	AC016245.1	-	lncRNA	chr17	78518637	78940168	RPTOR	+	protein_coding	3993	opposite	1524_ID	chr17	78775440	78779432	3993	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	33
8805	ENST00000579300.1	ENST00000278550.12_4	chr11	78684765	78684854	AP002958.1	-	miRNA	chr11	78363873	79152074	TENM4	-	protein_coding	89	same	6221_ID	chr11	78684766	78684854	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	33
8999	ENST00000580400.1	ENST00000278550.12_4	chr11	79133212	79133270	MIR5579	-	miRNA	chr11	78363873	79152074	TENM4	-	protein_coding	58	same	8932_ID	chr11	79133213	79133270	58	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	33
9512	ENST00000583200.1	ENST00000359373.9_3	chr11	72494574	72494637	MIR4692	+	miRNA	chr11	72396113	72504644	ARAP1	-	protein_coding	63	opposite	8678_ID	chr11	72494575	72494637	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	33
9592	ENST00000583666.2_4	ENST00000389934.7_5	chr17	56737784	56769379	IGBP1P2	-	protein_coding	chr17	56634038	56769416	TEX14	-	protein_coding	31595	same	7336_ID	chr17	56737785	56769379	31595	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	33
9709	ENST00000584303.1	ENST00000644737.1_5	chr19	11122383	11122680	RN7SL192P	+	misc_RNA	chr19	11071607	11173144	SMARCA4	+	protein_coding	297	same	10006_ID	chr19	11122384	11122680	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	33
9764	ENST00000584611.1_3	ENST00000424526.6_2	chr18	18960246	19030978	AC015878.1	-	lncRNA	chr18	18822202	19105378	GREB1L	+	protein_coding	70732	opposite	1494_ID	chr18	18960247	19030978	70732	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	33
9791	ENST00000584777.1	ENST00000651671.1_3	chr9	139414019	139414078	MIR4673	-	miRNA	chr9	139388884	139440500	NOTCH1	-	protein_coding	59	same	8664_ID	chr9	139414020	139414078	59	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	33
10643	ENST00000605703.1	ENST00000549804.7_2	chr15	25376124	25376484	RP11-145P16.3	+	sense_intronic	chr15	25295778	25383903	SNHG14	+	lncRNA	360	same	11879_ID	chr15	25376125	25376484	360	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	33	33
10926	ENST00000608515.1_1	ENST00000676574.1_1	chr7	107582560	107583185	AC005046.1	+	lncRNA	chr7	107564243	107643658	LAMB1	-	nonsense_mediated_decay	625	opposite	227_ID	chr7	107582561	107583185	625	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	33
10938	ENST00000608701.1_1	ENST00000360304.8_4	chr3	123434697	123435246	AC020634.2	+	lncRNA	chr3	123328895	123603179	MYLK	-	protein_coding	549	opposite	1713_ID	chr3	123434698	123435246	549	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	33
11023	ENST00000609671.1_1	ENST00000263881.8_6	chr2	39550468	39550945	AC007684.2	-	lncRNA	chr2	39476406	39664426	MAP4K3	-	protein_coding	477	same	636_ID	chr2	39550469	39550945	477	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	33
12387	ENST00000655216.1_4	ENST00000306801.8_2	chr17	78797969	78800700	AC016245.2	-	lncRNA	chr17	78518637	78940168	RPTOR	+	protein_coding	2731	opposite	1525_ID	chr17	78797970	78800700	2731	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	33
12539	ENST00000658236.1_1	ENST00000427926.6_5	chr22	19183912	19187594	AC000072.1	+	lncRNA	chr22	19166985	19279242	CLTCL1	-	protein_coding	3682	opposite	22_ID	chr22	19183913	19187594	3682	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	24	33
13069	ENST00000669245.1_3	ENST00000531445.3_8	chr4	6179912	6186652	AC113615.2	+	lncRNA	chr4	5958844	6202282	C4orf50	-	protein_coding	6740	opposite	3858_ID	chr4	6179913	6186652	6740	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	33
13134	ENST00000670881.1_3	ENST00000549804.7_2	chr15	25336932	25352616	AC124312.5	-	lncRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	15684	opposite	4009_ID	chr15	25336933	25352616	15684	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	33
13145	ENST00000671127.1_1	ENST00000549396.6_4	chr12	81810914	81950416	AC069228.1	+	lncRNA	chr12	81651753	82153129	PPFIA2	-	protein_coding	178596	opposite	2474_ID	chr12	81810915	81950416	139502	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	33
354	ENST00000304735.4_2	ENST00000575334.5_5	chr16	4421848	4433539	VASN	+	protein_coding	chr16	4390251	4470495	CORO7-PAM16	-	nonsense_mediated_decay	11691	opposite	12887_ID	chr16	4421849	4433539	11691	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	32
849	ENST00000362556.1	ENST00000389934.7_5	chr17	56743897	56744058	RNU1-108P	-	snRNA	chr17	56634038	56769416	TEX14	-	protein_coding	161	same	10553_ID	chr17	56743898	56744058	161	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
1050	ENST00000363701.1	ENST00000236698.9_3	chr3	136148925	136149025	RNU6-1284P	-	snRNA	chr3	136055077	136471220	STAG1	-	protein_coding	100	same	10979_ID	chr3	136148926	136149025	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	32
1069	ENST00000363791.1	ENST00000549804.7_2	chr15	25319260	25319362	SNORD116-10	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	102	same	12327_ID	chr15	25319261	25319362	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	32
1108	ENST00000363973.1	ENST00000236698.9_3	chr3	136307050	136307153	RNY4P4	+	misc_RNA	chr3	136055077	136471220	STAG1	-	protein_coding	103	opposite	11861_ID	chr3	136307051	136307153	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	32
1134	ENST00000364127.1	ENST00000389934.7_5	chr17	56756887	56757051	RNU1-85P	-	snRNA	chr17	56634038	56769416	TEX14	-	protein_coding	164	same	10606_ID	chr17	56756888	56757051	164	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
1195	ENST00000364478.1	ENST00000637919.1_4	chr20	8811832	8812040	RNU105B	+	snoRNA	chr20	8057897	8863846	PLCB1	+	protein_coding	208	same	10613_ID	chr20	8811833	8812040	208	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	32	32
1327	ENST00000365207.1	ENST00000389934.7_5	chr17	56736509	56736666	RNU1-60P	-	snRNA	chr17	56634038	56769416	TEX14	-	protein_coding	157	same	10592_ID	chr17	56736510	56736666	157	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
1356	ENST00000365378.1	ENST00000381486.7_2	chr2	11701786	11701905	RNA5SP85	-	rRNA	chr2	11674170	11782914	GREB1	+	protein_coding	119	opposite	10527_ID	chr2	11701787	11701905	119	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	32
1419	ENST00000366778.5_1	ENST00000366779.6_2	chr1	227127986	227175245	COQ8A	+	protein_coding	chr1	227057884	227175246	AL391628.1	+	nonsense_mediated_decay	47259	same	6692_ID	chr1	227127987	227175245	47259	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	19	32
1493	ENST00000372387.1_1	ENST00000372391.7_4	chr10	79626632	79629368	AL391421.1	+	lncRNA	chr10	79550548	79686513	DLG5	-	protein_coding	2736	opposite	5578_ID	chr10	79626633	79629368	2736	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	32
1656	ENST00000383882.1	ENST00000549804.7_2	chr15	25321075	25321167	SNORD116-11	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	92	same	12328_ID	chr15	25321076	25321167	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	32
1664	ENST00000383894.1	ENST00000549804.7_2	chr15	25325288	25325380	SNORD116-14	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	92	same	12331_ID	chr15	25325289	25325380	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	32
1670	ENST00000383904.1	ENST00000371380.8_3	chr10	95915395	95915502	RNU6-657P	-	snRNA	chr10	95753687	96092580	PLCE1	+	protein_coding	107	opposite	11413_ID	chr10	95915396	95915502	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	32
1677	ENST00000383929.1	ENST00000549804.7_2	chr15	25328734	25328826	SNORD116-17	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	92	same	12334_ID	chr15	25328735	25328826	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	32
1687	ENST00000383961.1	ENST00000549804.7_2	chr15	25330531	25330623	SNORD116-18	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	92	same	12335_ID	chr15	25330532	25330623	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	32
1708	ENST00000384000.1	ENST00000549804.7_2	chr15	25318253	25318348	SNORD116-9	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	95	same	12355_ID	chr15	25318254	25318348	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	32
1766	ENST00000384190.1	ENST00000389934.7_5	chr17	56754934	56755098	RNU1-52P	-	snRNA	chr17	56634038	56769416	TEX14	-	protein_coding	164	same	10589_ID	chr17	56754935	56755098	164	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
1799	ENST00000384274.1	ENST00000549804.7_2	chr15	25299356	25299451	SNORD116-2	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	95	same	12337_ID	chr15	25299357	25299451	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
1806	ENST00000384287.1	ENST00000549804.7_2	chr15	25302006	25302101	SNORD116-3	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	95	same	12349_ID	chr15	25302007	25302101	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
1822	ENST00000384335.1	ENST00000549804.7_2	chr15	25296623	25296718	SNORD116-1	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	95	same	12326_ID	chr15	25296624	25296718	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
1828	ENST00000384365.1	ENST00000549804.7_2	chr15	25315578	25315673	SNORD116-8	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	95	same	12354_ID	chr15	25315579	25315673	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	32
1837	ENST00000384404.1	ENST00000549804.7_2	chr15	25312934	25313029	SNORD116-7	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	95	same	12353_ID	chr15	25312935	25313029	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	32
1840	ENST00000384408.1	ENST00000549804.7_2	chr15	25324204	25324296	SNORD116-13	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	92	same	12330_ID	chr15	25324205	25324296	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	32
1853	ENST00000384445.1	ENST00000549804.7_2	chr15	25326433	25326525	SNORD116-15	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	92	same	12332_ID	chr15	25326434	25326525	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	32
1859	ENST00000384462.1	ENST00000549804.7_2	chr15	25307479	25307574	SNORD116-5	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	95	same	12351_ID	chr15	25307480	25307574	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	32
1861	ENST00000384468.1	ENST00000549804.7_2	chr15	25322197	25322289	SNORD116-12	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	92	same	12329_ID	chr15	25322198	25322289	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	32
1879	ENST00000384516.1	ENST00000549804.7_2	chr15	25351667	25351750	SNORD116-29	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	83	same	12348_ID	chr15	25351668	25351750	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	32
1887	ENST00000384533.1	ENST00000549804.7_2	chr15	25327914	25328006	SNORD116-16	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	92	same	12333_ID	chr15	25327915	25328006	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	32
1889	ENST00000384537.1	ENST00000315872.11_4	chr2	11374113	11374220	RNU6-1081P	+	snRNA	chr2	11319884	11484762	ROCK2	-	protein_coding	107	opposite	10817_ID	chr2	11374114	11374220	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	32
1897	ENST00000384549.1	ENST00000549804.7_2	chr15	25339183	25339275	SNORD116-24	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	92	same	12340_ID	chr15	25339184	25339275	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	32
1935	ENST00000384645.1	ENST00000549804.7_2	chr15	25336932	25337024	SNORD116-23	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	92	same	12338_ID	chr15	25336933	25337024	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	32
1952	ENST00000384711.1	ENST00000549804.7_2	chr15	25310172	25310268	SNORD116-6	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	96	same	12352_ID	chr15	25310173	25310268	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	32
1963	ENST00000384729.1	ENST00000549804.7_2	chr15	25331673	25331765	SNORD116-19	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	92	same	12336_ID	chr15	25331674	25331765	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	32
2012	ENST00000384842.1	ENST00000436759.6_4	chr8	145019358	145019447	MIR661	-	miRNA	chr8	144989320	145050902	PLEC	-	protein_coding	89	same	9065_ID	chr8	145019359	145019447	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	32
2210	ENST00000385228.1	ENST00000436636.7_5	chr3	170824452	170824548	MIR569	-	miRNA	chr3	170776202	171178194	TNIK	-	protein_coding	96	same	8961_ID	chr3	170824453	170824548	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	32
2620	ENST00000401386.1	ENST00000399799.3_4	chr18	18642343	18642434	AC036178.1	-	miRNA	chr18	18526866	18691774	ROCK1	-	protein_coding	91	same	2272_ID	chr18	18642344	18642434	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	32
2712	ENST00000408274.1	ENST00000637919.1_4	chr20	8589826	8589912	AL031655.1	+	miRNA	chr20	8057897	8863846	PLCB1	+	protein_coding	86	same	4533_ID	chr20	8589827	8589912	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	32
2793	ENST00000408469.2	ENST00000400454.6_4	chr21	41949428	41949538	AF064863.1	+	miRNA	chr21	41382925	42219084	DSCAM	-	protein_coding	110	opposite	4369_ID	chr21	41949429	41949538	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	32
2975	ENST00000408881.1	ENST00000374935.7_3	chr1	21314806	21314925	MIR1256	-	miRNA	chr1	21132784	21503381	EIF4G3	-	protein_coding	119	same	8008_ID	chr1	21314807	21314925	119	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	32
3056	ENST00000410366.1	ENST00000637919.1_4	chr20	8590800	8590887	AL031655.2	-	miRNA	chr20	8057897	8863846	PLCB1	+	protein_coding	87	opposite	4534_ID	chr20	8590801	8590887	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	32
3202	ENST00000411041.1	ENST00000357248.8_5	chr9	2162762	2162953	RNU2-25P	-	snRNA	chr9	2015185	2193620	SMARCA2	+	protein_coding	191	opposite	10624_ID	chr9	2162763	2162953	191	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	32
3540	ENST00000418218.5_3	ENST00000443866.2_2	chr2	241894033	241906868	UICLM	-	lncRNA	chr2	241845746	241932728	CROCC2	+	protein_coding	12835	opposite	12844_ID	chr2	241894034	241906868	12835	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	32
3647	ENST00000420998.1_1	ENST00000373545.7_4	chrX	71908799	71932190	PHKA1-AS1	+	lncRNA	chrX	71798663	71934167	PHKA1	-	protein_coding	23391	opposite	9552_ID	chrX	71908800	71932190	23391	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	32
3722	ENST00000422749.5_1	ENST00000400454.6_4	chr21	41755009	41757285	DSCAM-AS1	+	lncRNA	chr21	41382925	42219084	DSCAM	-	protein_coding	2276	opposite	6848_ID	chr21	41755010	41757285	2276	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	32
3811	ENST00000425110.1_3	ENST00000443866.2_2	chr2	241920931	241925489	AC104809.1	-	lncRNA	chr2	241845746	241932728	CROCC2	+	protein_coding	4558	opposite	3572_ID	chr2	241920932	241925489	4558	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	28	32
3857	ENST00000426860.1_3	ENST00000357248.8_5	chr9	2041899	2046023	AL359076.1	-	lncRNA	chr9	2015185	2193620	SMARCA2	+	protein_coding	4124	opposite	5468_ID	chr9	2041900	2046023	4124	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	32
4059	ENST00000432707.1_1	ENST00000371380.8_3	chr10	95868872	95880864	AL139118.1	+	lncRNA	chr10	95753687	96092580	PLCE1	+	protein_coding	11992	same	5008_ID	chr10	95868873	95880864	11992	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	32
4278	ENST00000438899.5_3	ENST00000371380.8_3	chr10	95841706	95868537	PLCE1-AS2	-	lncRNA	chr10	95753687	96092580	PLCE1	+	protein_coding	26865	opposite	9575_ID	chr10	95841707	95868537	26831	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	32
4386	ENST00000441910.5_3	ENST00000400454.6_4	chr21	41987303	42002693	DSCAM-IT1	-	lncRNA	chr21	41382925	42219084	DSCAM	-	protein_coding	15390	same	6849_ID	chr21	41987304	42002693	15390	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	32
4567	ENST00000447227.1_3	ENST00000371380.8_3	chr10	95984916	95987045	AL389885.1	-	lncRNA	chr10	95753687	96092580	PLCE1	+	protein_coding	2129	opposite	5547_ID	chr10	95984917	95987045	2129	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	32
4711	ENST00000451443.1_1	ENST00000637919.1_4	chr20	8229371	8237564	PLCB1-IT1	+	lncRNA	chr20	8057897	8863846	PLCB1	+	protein_coding	8214	same	9572_ID	chr20	8229372	8237564	8193	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	32
4974	ENST00000458377.1_3	ENST00000310397.13_4	chr2	241955015	242003533	SNED1-AS1	-	lncRNA	chr2	241938034	242034983	SNED1	+	protein_coding	48518	opposite	12146_ID	chr2	241955016	242003533	48518	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	32
5059	ENST00000459175.1	ENST00000359171.8_3	chr11	3802624	3802686	RNU7-50P	+	snRNA	chr11	3696240	3819022	NUP98	-	protein_coding	62	opposite	11789_ID	chr11	3802625	3802686	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	32
5196	ENST00000463397.2	ENST00000381486.7_2	chr2	11724898	11725176	RN7SL674P	+	misc_RNA	chr2	11674170	11782914	GREB1	+	protein_coding	278	same	10358_ID	chr2	11724899	11725176	278	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	32
5398	ENST00000476405.1_3	ENST00000441493.7_4	chr22	18270417	18294263	AC016026.1	-	retained_intron	chr22	18270414	18507327	MICAL3	-	protein_coding	23846	same	1513_ID	chr22	18270418	18294263	23846	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	28	32
5954	ENST00000508443.1_3	ENST00000620254.5_4	chr5	156802748	156811947	AC008676.1	-	lncRNA	chr5	156693132	156822602	CYFIP2	+	protein_coding	9210	opposite	771_ID	chr5	156802749	156811947	9199	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	28	32
6199	ENST00000515899.1	ENST00000236698.9_3	chr3	136351989	136352048	RNU7-198P	+	snRNA	chr3	136055077	136471220	STAG1	-	protein_coding	59	opposite	11762_ID	chr3	136351990	136352048	59	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
6204	ENST00000515909.1	ENST00000381486.7_2	chr2	11701319	11701432	RNU2-13P	+	snRNA	chr2	11674170	11782914	GREB1	+	protein_coding	113	same	10620_ID	chr2	11701320	11701432	113	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	32
6239	ENST00000516006.1	ENST00000549804.7_2	chr15	25344645	25344741	SNORD116-26	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	96	same	12343_ID	chr15	25344646	25344741	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	32
6265	ENST00000516087.1	ENST00000549804.7_2	chr15	25346721	25346813	SNORD116-27	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	92	same	12346_ID	chr15	25346722	25346813	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	32
6272	ENST00000516105.1	ENST00000374935.7_3	chr1	21167733	21167795	RNU7-200P	+	snRNA	chr1	21132784	21503381	EIF4G3	-	protein_coding	62	opposite	11765_ID	chr1	21167734	21167795	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	32
6277	ENST00000516125.1	ENST00000359171.8_3	chr11	3736001	3736105	RNU6-1143P	-	snRNA	chr11	3696240	3819022	NUP98	-	protein_coding	104	same	10852_ID	chr11	3736002	3736105	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	32
6394	ENST00000516468.1	ENST00000549804.7_2	chr15	25353414	25353499	SNORD116-30	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	85	same	12350_ID	chr15	25353415	25353499	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	32
6412	ENST00000516517.1	ENST00000549804.7_2	chr15	25342809	25342901	SNORD116-25	+	snoRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	92	same	12342_ID	chr15	25342810	25342901	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	32
6462	ENST00000516665.1	ENST00000298310.10_4	chr14	50306442	50306545	RNU6-539P	+	snRNA	chr14	50248800	50319506	NEMF	-	protein_coding	103	opposite	11321_ID	chr14	50306443	50306545	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	32
6618	ENST00000517086.1	ENST00000371380.8_3	chr10	95806794	95806882	RNY4P26	-	misc_RNA	chr10	95753687	96092580	PLCE1	+	protein_coding	88	opposite	11858_ID	chr10	95806795	95806882	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	32
6625	ENST00000517105.1	ENST00000236698.9_3	chr3	136440235	136440337	RNU6-789P	-	snRNA	chr3	136055077	136471220	STAG1	-	protein_coding	102	same	11500_ID	chr3	136440236	136440337	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
7303	ENST00000539987.1_3	ENST00000310903.9_7	chr12	109883214	109885302	AC007570.1	-	lncRNA	chr12	109785707	109886176	MYO1H	+	protein_coding	2088	opposite	608_ID	chr12	109883215	109885302	2088	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	31	32
7359	ENST00000543925.5_3	ENST00000342922.8_1	chr11	47292207	47293661	MADD-AS1	-	lncRNA	chr11	47290926	47351582	MADD	+	protein_coding	1454	opposite	7902_ID	chr11	47292208	47293661	1454	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
7428	ENST00000547027.1_3	ENST00000361466.7_5	chr12	102040497	102053748	AC117505.1	-	lncRNA	chr12	101988748	102079806	MYBPC1	+	protein_coding	13251	opposite	3939_ID	chr12	102040498	102053748	13251	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	32
7632	ENST00000555257.1_1	ENST00000013125.8_3	chr14	50915524	50923460	AL118556.1	+	lncRNA	chr14	50885242	50999327	MAP4K5	-	protein_coding	7936	opposite	4736_ID	chr14	50915525	50923460	7936	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	32
7668	ENST00000556207.1_4	ENST00000298832.14_3	chr14	76280844	76303554	AF107885.2	-	lncRNA	chr14	76127588	76421422	TTLL5	+	protein_coding	33197	opposite	4379_ID	chr14	76280845	76303554	22710	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	28	32
8004	ENST00000563751.1_3	ENST00000678203.1_1	chr16	30510086	30510875	AC116348.2	-	lncRNA	chr16	30483978	30534888	ITGAL	+	nonsense_mediated_decay	789	opposite	3903_ID	chr16	30510087	30510875	789	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	17	32
8130	ENST00000566394.1_3	ENST00000442510.8_4	chr1	198626681	198636190	AL157402.2	-	lncRNA	chr1	198608169	198726605	PTPRC	+	protein_coding	9509	opposite	5062_ID	chr1	198626682	198636190	9509	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	32
8188	ENST00000567527.1_1	ENST00000549804.7_2	chr15	25332807	25334043	AC124312.3	+	lncRNA	chr15	25295778	25383903	SNHG14	+	lncRNA	1236	same	4008_ID	chr15	25332808	25334043	1236	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	32
8269	ENST00000569459.1_3	ENST00000678203.1_1	chr16	30488500	30500674	AC116348.3	-	lncRNA	chr16	30483978	30534888	ITGAL	+	nonsense_mediated_decay	12174	opposite	3904_ID	chr16	30488501	30500674	12174	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	32
8803	ENST00000579283.1	ENST00000379942.5_4	chrX	18933364	18933653	RN7SL48P	-	misc_RNA	chrX	18910415	19002232	PHKA2	-	protein_coding	289	same	10221_ID	chrX	18933365	18933653	289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	32
8817	ENST00000579379.1	ENST00000314256.12_4	chr17	73492725	73492837	AC100787.1	+	miRNA	chr17	73452715	73496533	TMEM94	+	protein_coding	112	same	3413_ID	chr17	73492726	73492837	112	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	25	32
8948	ENST00000580105.1	ENST00000381486.7_2	chr2	11680730	11680803	MIR4429	-	miRNA	chr2	11674170	11782914	GREB1	+	protein_coding	73	opposite	8531_ID	chr2	11680731	11680803	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
9007	ENST00000580450.1	ENST00000204005.13_2	chr19	41112672	41112955	RN7SL758P	-	misc_RNA	chr19	41099071	41135723	LTBP4	+	protein_coding	283	opposite	10413_ID	chr19	41112673	41112955	283	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	32
9225	ENST00000581704.1	ENST00000381486.7_2	chr2	11747529	11747631	AC011994.1	+	miRNA	chr2	11674170	11782914	GREB1	+	protein_coding	102	same	1316_ID	chr2	11747530	11747631	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	32
9371	ENST00000582403.1	ENST00000379028.8_5	chr7	107998750	107998849	AC007567.1	+	miRNA	chr7	107788093	108096880	NRCAM	-	protein_coding	99	opposite	607_ID	chr7	107998751	107998849	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	32
9432	ENST00000582784.1	ENST00000443035.8_4	chr15	66011583	66011670	MIR4511	-	miRNA	chr15	65951460	66084631	DENND4A	-	protein_coding	87	same	8589_ID	chr15	66011584	66011670	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	32
9551	ENST00000583452.1_1	ENST00000358691.10_7	chr17	65220418	65221657	AC007448.3	+	lncRNA	chr17	65066559	65241312	HELZ	-	protein_coding	1239	opposite	575_ID	chr17	65220419	65221657	1239	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	32
9715	ENST00000584331.1_1	ENST00000424526.6_2	chr18	18896838	18897756	AC015878.2	+	lncRNA	chr18	18822202	19105378	GREB1L	+	protein_coding	918	same	1495_ID	chr18	18896839	18897756	918	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
9835	ENST00000585040.1	ENST00000400454.6_4	chr21	41584278	41584358	MIR4760	-	miRNA	chr21	41382925	42219084	DSCAM	-	protein_coding	80	same	8747_ID	chr21	41584279	41584358	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	32
9857	ENST00000585151.1	ENST00000489180.6_3	chr1	5953898	5953984	AL356261.1	-	miRNA	chr1	5922872	6052533	NPHP4	-	nonsense_mediated_decay	86	same	5376_ID	chr1	5953899	5953984	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	32
10027	ENST00000589557.1_1	ENST00000589130.5_3	chr19	39086985	39092334	AC008649.1	+	lncRNA	chr19	39078285	39109522	MAP4K1	-	protein_coding	5349	opposite	761_ID	chr19	39086986	39092334	5349	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	21	32
10311	ENST00000598393.1	ENST00000294066.7_7	chr11	64552392	64553092	RP11-869B15.1	-	lincRNA	chr11	64552389	64570686	MAP4K2	-	protein_coding	700	same	11938_ID	chr11	64552393	64553092	700	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	32	32
10599	ENST00000604533.1_1	ENST00000321322.6_3	chr11	117539197	117539573	AP001554.1	+	lncRNA	chr11	117298488	117667976	DSCAML1	-	protein_coding	376	opposite	6145_ID	chr11	117539198	117539573	376	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	32
10968	ENST00000609123.1_1	ENST00000371380.8_3	chr10	96074663	96075084	AL139124.1	-	lncRNA	chr10	95753687	96092580	PLCE1	+	protein_coding	421	opposite	5011_ID	chr10	96074664	96075084	421	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	32
11017	ENST00000609609.1_1	ENST00000602925.5_3	chr9	19371383	19371943	AL391834.1	-	lncRNA	chr9	19230432	19372856	DENND4C	+	protein_coding	560	opposite	5585_ID	chr9	19371384	19371943	560	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	31	32
13003	ENST00000667910.1_1	ENST00000458234.5_7	chr12	124997767	125001344	AC073592.1	+	lncRNA	chr12	124831138	125052010	NCOR2	-	protein_coding	3577	opposite	2538_ID	chr12	124997768	125001344	3577	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	32
13105	ENST00000670068.1_1	ENST00000400454.6_4	chr21	42108243	42126814	AF064866.1	+	lncRNA	chr21	41382925	42219084	DSCAM	-	protein_coding	18571	opposite	4370_ID	chr21	42108244	42126814	18571	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
81891	ENST00000567396.1_3	ENST00000443035.8_4	chr15	66058797	66059736	AC011939.2	-	lncRNA	chr15	65951460	66084631	DENND4A	-	protein_coding	939	same	1312_ID	chr15	66058798	66059736	939	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	32
1224	ENST00000364640.1	ENST00000563290.6_4	chr15	77028981	77029321	RN7SKP217	+	misc_RNA	chr15	76640244	77197681	SCAPER	-	protein_coding	340	opposite	9827_ID	chr15	77028982	77029321	340	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	31
2137	ENST00000385046.1	ENST00000441493.7_4	chr22	18463633	18463727	MIR648	-	miRNA	chr22	18270414	18507327	MICAL3	-	protein_coding	94	same	9055_ID	chr22	18463634	18463727	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	31
3524	ENST00000417577.2_3	ENST00000602925.5_3	chr9	19291334	19292574	AL161909.2	-	lncRNA	chr9	19230432	19372856	DENND4C	+	protein_coding	1240	opposite	5182_ID	chr9	19291335	19292574	1240	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	31
3807	ENST00000425008.3_3	ENST00000305135.10_2	chr3	183524244	183527303	YEATS2-AS1	-	lncRNA	chr3	183415584	183530412	YEATS2	+	protein_coding	4327	opposite	12926_ID	chr3	183524245	183527303	3059	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	28	31
3815	ENST00000425183.1_3	ENST00000310397.13_4	chr2	241949461	241950161	AC093585.1	-	lncRNA	chr2	241938034	242034983	SNED1	+	protein_coding	700	opposite	3223_ID	chr2	241949462	241950161	700	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	31
3911	ENST00000428747.1_3	ENST00000358897.8_1	chr1	15653175	15670372	FHAD1-AS1	-	lncRNA	chr1	15573767	15724622	FHAD1	+	protein_coding	17197	opposite	7027_ID	chr1	15653176	15670372	17197	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	31
3945	ENST00000429618.1_3	ENST00000441493.7_4	chr22	18465970	18466385	AC016027.3	-	lncRNA	chr22	18270414	18507327	MICAL3	-	protein_coding	415	same	1517_ID	chr22	18465971	18466385	415	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	31
4363	ENST00000441167.1_3	ENST00000441493.7_4	chr22	18487035	18490074	AC016027.2	-	lncRNA	chr22	18270414	18507327	MICAL3	-	protein_coding	3039	same	1516_ID	chr22	18487036	18490074	3039	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	31
4501	ENST00000445459.2_1	ENST00000359827.7_3	chr7	131948910	131956028	AC018643.1	+	lncRNA	chr7	131808099	132262060	PLXNA4	-	protein_coding	7118	opposite	1644_ID	chr7	131948911	131956028	7118	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	31
4528	ENST00000446275.1_1	ENST00000413683.5_2	chr5	131280100	131303913	AC034228.2	+	lncRNA	chr5	131142835	131329971	AC034228.3	-	nonsense_mediated_decay	23813	opposite	2262_ID	chr5	131280101	131303913	23813	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	15	31
4861	ENST00000455442.1_1	ENST00000359827.7_3	chr7	132037092	132052735	AC011625.1	+	lncRNA	chr7	131808099	132262060	PLXNA4	-	protein_coding	15643	opposite	1274_ID	chr7	132037093	132052735	15643	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	31
4952	ENST00000457528.6_3	ENST00000535157.5_1	chr13	78173889	78180686	SCEL-AS1	-	lncRNA	chr13	78109808	78219394	SCEL	+	protein_coding	6797	opposite	12003_ID	chr13	78173890	78180686	6797	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	31
5229	ENST00000465665.2	ENST00000510636.5_1	chr5	175974435	175974727	RN7SL684P	-	misc_RNA	chr5	175969511	176022975	CDHR2	+	protein_coding	292	opposite	10365_ID	chr5	175974436	175974727	292	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	31
5460	ENST00000481078.2	ENST00000429027.6_2	chr12	19329224	19329523	RN7SL459P	-	misc_RNA	chr12	19282701	19529334	PLEKHA5	+	protein_coding	299	opposite	10199_ID	chr12	19329225	19329523	299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	31
5617	ENST00000492147.2	ENST00000429027.6_2	chr12	19456413	19456710	RN7SL67P	+	misc_RNA	chr12	19282701	19529334	PLEKHA5	+	protein_coding	297	same	10362_ID	chr12	19456414	19456710	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	31
5713	ENST00000498823.2	ENST00000372391.7_4	chr10	79672031	79672304	RN7SL284P	-	misc_RNA	chr10	79550548	79686513	DLG5	-	protein_coding	273	same	10077_ID	chr10	79672032	79672304	273	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	31
5744	ENST00000501211.2_1	ENST00000429027.6_2	chr12	19300007	19307593	AC092828.1	+	lncRNA	chr12	19282701	19529334	PLEKHA5	+	protein_coding	7586	same	3155_ID	chr12	19300008	19307593	7586	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	31
6197	ENST00000515897.1	ENST00000678203.1_1	chr16	30494455	30494516	RNU7-61P	-	snRNA	chr16	30483978	30534888	ITGAL	+	nonsense_mediated_decay	61	opposite	11798_ID	chr16	30494456	30494516	61	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	31
7264	ENST00000538041.1_3	ENST00000310903.9_7	chr12	109791887	109797293	LINC01486	-	lncRNA	chr12	109785707	109886176	MYO1H	+	protein_coding	5406	opposite	7645_ID	chr12	109791888	109797293	5406	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	31
7321	ENST00000541782.1_1	ENST00000315579.10_2	chr12	6619440	6619688	AC006064.5	+	lncRNA	chr12	6603267	6641121	NCAPD2	+	protein_coding	248	same	414_ID	chr12	6619441	6619688	248	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	31
7386	ENST00000545254.1_1	ENST00000334456.10_5	chr11	72295615	72299023	PDE2A-AS2	+	lncRNA	chr11	72287184	72385466	PDE2A	-	protein_coding	3408	opposite	9523_ID	chr11	72295616	72299023	3408	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	31
7452	ENST00000547927.1_3	ENST00000258526.9_2	chr12	94673594	94676620	AC073655.2	-	lncRNA	chr12	94542352	94701451	PLXNC1	+	protein_coding	5087	opposite	2546_ID	chr12	94673595	94676620	3026	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	23	31
7453	ENST00000547942.1_3	ENST00000293373.11_4	chr12	54936894	54937889	AC068789.1	-	lncRNA	chr12	54891535	54942027	NCKAP1L	+	protein_coding	995	opposite	2442_ID	chr12	54936895	54937889	995	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	31	31
7495	ENST00000549725.1_1	ENST00000281928.9_5	chr12	116398991	116400538	AC012157.2	+	lncRNA	chr12	116396380	116715498	MED13L	-	protein_coding	1547	opposite	1337_ID	chr12	116398992	116400538	1547	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	31	31
7659	ENST00000555966.1_1	ENST00000530997.7_6	chr14	51288597	51290219	AL133485.2	+	lncRNA	chr14	51186480	51297880	NIN	-	protein_coding	1622	opposite	4864_ID	chr14	51288598	51290219	1622	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	31
7796	ENST00000559520.1_1	ENST00000260402.8_5	chr15	40592870	40594021	PLCB2-AS1	+	lncRNA	chr15	40580109	40600136	PLCB2	-	protein_coding	1151	opposite	9573_ID	chr15	40592871	40594021	1151	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	31
7928	ENST00000562525.1_3	ENST00000678203.1_1	chr16	30491908	30492667	AC116348.1	-	lncRNA	chr16	30483978	30534888	ITGAL	+	nonsense_mediated_decay	759	opposite	3901_ID	chr16	30491909	30492667	759	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	31
7971	ENST00000563162.1_1	ENST00000426508.7_5	chr16	1630527	1660329	AL133297.2	+	lncRNA	chr16	1560427	1662073	IFT140	-	protein_coding	29802	opposite	4836_ID	chr16	1630528	1660329	29802	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	31
8275	ENST00000569670.1_3	ENST00000610761.2_4	chr16	1801559	1802263	AL031717.1	-	lncRNA	chr16	1756195	1820352	MAPK8IP3	+	protein_coding	704	opposite	4552_ID	chr16	1801560	1802263	704	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	31
8285	ENST00000570022.1_3	ENST00000610761.2_4	chr16	1763527	1764209	AL031710.1	-	lncRNA	chr16	1756195	1820352	MAPK8IP3	+	protein_coding	682	opposite	4548_ID	chr16	1763528	1764209	682	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	31
8326	ENST00000571660.1_3	ENST00000676846.1_1	chr16	16383991	16386099	AC136624.2	-	lncRNA	chr16	16326362	16394663	NOMO3	+	nonsense_mediated_decay	2108	opposite	4162_ID	chr16	16383992	16386099	2108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	29	31
8367	ENST00000573861.1	ENST00000620267.1_3	chr16	71963913	71965102	RP11-498D10.6	+	antisense	chr16	71963440	72033877	PKD1L3	-	protein_coding	1189	opposite	11917_ID	chr16	71963914	71965102	1189	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	30	31
8394	ENST00000575043.1_1	ENST00000263087.9_4	chr17	3632654	3633787	AC116914.1	+	lncRNA	chr17	3617921	3704482	ITGAE	-	protein_coding	1133	opposite	3920_ID	chr17	3632655	3633787	1133	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	24	31
8463	ENST00000577319.1	ENST00000355280.11_3	chr17	4786269	4786591	RN7SL784P	+	misc_RNA	chr17	4736634	4801356	MINK1	+	protein_coding	322	same	10430_ID	chr17	4786270	4786591	322	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	31
8637	ENST00000578255.1	ENST00000610761.2_4	chr16	1784985	1785067	MIR3177	+	miRNA	chr16	1756195	1820352	MAPK8IP3	+	protein_coding	82	same	8296_ID	chr16	1784986	1785067	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	31
8756	ENST00000578978.1	ENST00000370598.6_2	chr6	69924621	69924702	AL158051.1	-	miRNA	chr6	69345173	70099398	ADGRB3	+	protein_coding	81	opposite	5093_ID	chr6	69924622	69924702	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	31
8791	ENST00000579185.1	ENST00000355280.11_3	chr17	4778920	4779205	RN7SL171P	+	misc_RNA	chr17	4736634	4801356	MINK1	+	protein_coding	285	same	9992_ID	chr17	4778921	4779205	285	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	31
9056	ENST00000580665.1	ENST00000678203.1_1	chr16	30515239	30515322	MIR4518	+	miRNA	chr16	30483978	30534888	ITGAL	+	nonsense_mediated_decay	83	same	8598_ID	chr16	30515240	30515322	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	31
9178	ENST00000581359.1	ENST00000563290.6_4	chr15	76878987	76879032	MIR3713	+	miRNA	chr15	76640244	77197681	SCAPER	-	protein_coding	45	opposite	8395_ID	chr15	76878988	76879032	45	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	31
9947	ENST00000586761.2_1	ENST00000544028.5_3	chr1	52259656	52264826	AL050343.2	+	lncRNA	chr1	52254867	52344609	NRDC	-	protein_coding	5221	opposite	4655_ID	chr1	52259657	52264826	5170	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	22	31
10054	ENST00000590318.1_3	ENST00000400345.8_2	chr18	56065894	56067314	AC090236.1	-	lncRNA	chr18	55711457	56068771	NEDD4L	+	protein_coding	1420	opposite	2884_ID	chr18	56065895	56067314	1420	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	31	31
11335	ENST00000616163.1_1	ENST00000405995.5_2	chr9	134372865	134375578	AL358781.1	-	lncRNA	chr9	134269479	134375584	PRRC2B	+	protein_coding	2713	opposite	5463_ID	chr9	134372866	134375578	2713	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	31	31
11588	ENST00000621884.1_1	ENST00000610761.2_4	chr16	1757252	1757974	AL031710.2	+	lncRNA	chr16	1756195	1820352	MAPK8IP3	+	protein_coding	722	same	4549_ID	chr16	1757253	1757974	722	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	31
12371	ENST00000654937.1_3	ENST00000535157.5_1	chr13	78143309	78160947	AL137140.1	-	lncRNA	chr13	78109808	78219394	SCEL	+	protein_coding	17638	opposite	4942_ID	chr13	78143310	78160947	17638	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	31
12498	ENST00000657505.1_3	ENST00000441493.7_4	chr22	18283487	18284801	AC016026.2	+	lncRNA	chr22	18270414	18507327	MICAL3	-	protein_coding	1314	opposite	1514_ID	chr22	18283488	18284801	1314	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	29	31
13020	ENST00000668227.1_1	ENST00000367033.4_4	chr1	208279446	208281000	AL590138.1	+	lncRNA	chr1	208195586	208417729	PLXNA2	-	protein_coding	1554	opposite	5754_ID	chr1	208279447	208281000	1554	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	31
13083	ENST00000669622.1_3	ENST00000258526.9_2	chr12	94561303	94580821	AC123567.2	-	lncRNA	chr12	94542352	94701451	PLXNC1	+	protein_coding	20197	opposite	3990_ID	chr12	94561304	94580821	19518	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	31
13107	ENST00000670207.1_3	ENST00000258526.9_2	chr12	94654323	94656075	AC073655.3	-	lncRNA	chr12	94542352	94701451	PLXNC1	+	protein_coding	1752	opposite	2547_ID	chr12	94654324	94656075	1752	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	31
122	ENST00000253934.9_1	ENST00000426508.7_5	chr16	1578688	1605581	TMEM204	+	protein_coding	chr16	1560427	1662073	IFT140	-	protein_coding	26893	opposite	12720_ID	chr16	1578689	1605581	26893	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	30
279	ENST00000294635.5_4	ENST00000648585.1_1	chr1	74935059	74978295	LRRC53	-	protein_coding	chr1	74663939	75010077	FPGT-TNNI3K	+	nonsense_mediated_decay	43236	opposite	7864_ID	chr1	74935060	74978295	43236	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	27	30
444	ENST00000317402.11_3	ENST00000402989.5_3	chr2	17935124	17970208	GEN1	+	protein_coding	chr2	17846713	17981462	SMC6	-	protein_coding	35089	opposite	7114_ID	chr2	17935125	17970208	35084	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	30
505	ENST00000325418.5_2	ENST00000263087.9_4	chr17	3627196	3629993	HASPIN	+	protein_coding	chr17	3617921	3704482	ITGAE	-	protein_coding	2797	opposite	7216_ID	chr17	3627197	3629993	2797	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	30
913	ENST00000362944.1	ENST00000380875.7_3	chr9	14850426	14850533	RNU6-1260P	+	snRNA	chr9	14737197	14910993	FREM1	-	nonsense_mediated_decay	107	opposite	10955_ID	chr9	14850427	14850533	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	30
1070	ENST00000363795.1	ENST00000281928.9_5	chr12	116520374	116520481	RNU6-1188P	+	snRNA	chr12	116396380	116715498	MED13L	-	protein_coding	107	opposite	10890_ID	chr12	116520375	116520481	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	30
1200	ENST00000364507.1	ENST00000374403.4_2	chrX	69616128	69616225	RNY4P23	+	misc_RNA	chrX	69509953	69640736	KIF4A	+	protein_coding	97	same	11855_ID	chrX	69616129	69616225	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	30
1208	ENST00000364563.1	ENST00000357207.8_1	chr4	184596755	184596868	RNU6-335P	-	snRNA	chr4	184580419	184634747	TRAPPC11	+	protein_coding	113	opposite	11161_ID	chr4	184596756	184596868	113	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	30
1732	ENST00000384073.1	ENST00000535157.5_1	chr13	78197506	78197607	RNY3P7	+	misc_RNA	chr13	78109808	78219394	SCEL	+	protein_coding	101	same	11843_ID	chr13	78197507	78197607	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	30
2214	ENST00000385232.1	ENST00000281928.9_5	chr12	116586364	116586459	MIR620	-	miRNA	chr12	116396380	116715498	MED13L	-	protein_coding	95	same	9024_ID	chr12	116586365	116586459	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	30
2344	ENST00000390778.1	ENST00000332175.12_2	chr18	8227100	8227183	AP005227.1	-	miRNA	chr18	7566779	8406859	PTPRM	+	protein_coding	83	opposite	6298_ID	chr18	8227101	8227183	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	30
2346	ENST00000390787.1	ENST00000544028.5_3	chr1	52302012	52302082	MIR761	-	miRNA	chr1	52254867	52344609	NRDC	-	protein_coding	70	same	9079_ID	chr1	52302013	52302082	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	30
2601	ENST00000401294.1	ENST00000666250.1_1	chr8	104863826	104863916	AP001572.1	+	miRNA	chr8	104512923	105266642	RIMS2	+	protein_coding	90	same	6146_ID	chr8	104863827	104863916	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	30
2603	ENST00000401297.1	ENST00000464233.6_4	chr3	79633741	79633834	AC117479.1	-	miRNA	chr3	78646388	79817148	ROBO1	-	protein_coding	93	same	3932_ID	chr3	79633742	79633834	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	30
3375	ENST00000414004.2	ENST00000324219.8_3	chr2	102508954	102511150	FLJ20373	+	protein_coding	chr2	102314164	102511151	MAP4K4	+	protein_coding	2196	same	7041_ID	chr2	102508955	102511150	2196	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	30	30
3391	ENST00000414261.1_3	ENST00000639722.1_1	chr22	40768667	40784294	SGSM3-AS1	-	lncRNA	chr22	40742532	40806058	AL022238.3	+	nonsense_mediated_decay	15627	opposite	12052_ID	chr22	40768668	40784294	15627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	30
3405	ENST00000414634.1_1	ENST00000342358.9_4	chr3	193025032	193032151	ATP13A5-AS1	+	lncRNA	chr3	192992577	193096542	ATP13A5	-	protein_coding	7119	opposite	6367_ID	chr3	193025033	193032151	7119	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	30
3455	ENST00000415549.2_3	ENST00000648585.1_1	chr1	74807262	74844486	AC093158.1	-	lncRNA	chr1	74663939	75010077	FPGT-TNNI3K	+	nonsense_mediated_decay	37224	opposite	3184_ID	chr1	74807263	74844486	37224	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	13	30
3514	ENST00000417390.1_1	ENST00000368226.9_4	chr6	128349030	128406393	PTPRK-AS1	+	lncRNA	chr6	128289929	128841744	PTPRK	-	protein_coding	57363	opposite	9680_ID	chr6	128349031	128406393	57363	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	30
4051	ENST00000432477.2_2	ENST00000359015.5_4	chr6	136950203	136969336	MAP3K5-AS1	+	lncRNA	chr6	136878183	137113615	MAP3K5	-	protein_coding	19133	opposite	7914_ID	chr6	136950204	136969336	19133	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	30
4056	ENST00000432683.1_3	ENST00000314607.11_2	chr1	35824422	35831678	ZMYM4-AS1	-	lncRNA	chr1	35734309	35887659	ZMYM4	+	protein_coding	7256	opposite	13015_ID	chr1	35824423	35831678	7256	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	30
4117	ENST00000434575.1_3	ENST00000318967.7_3	chr1	153723458	153724652	AL513523.3	-	lncRNA	chr1	153700525	153747284	INTS3	+	protein_coding	1194	opposite	5714_ID	chr1	153723459	153724652	1194	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	30
4178	ENST00000436105.1_3	ENST00000395891.7_3	chr7	43548326	43562141	LUARIS	-	lncRNA	chr7	43152245	43605600	HECW1	+	protein_coding	13815	opposite	7882_ID	chr7	43548327	43562141	13815	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	24	30
4312	ENST00000439788.1_3	ENST00000358897.8_1	chr1	15660661	15661960	AL031283.2	-	lncRNA	chr1	15573767	15724622	FHAD1	+	protein_coding	1299	opposite	4513_ID	chr1	15660662	15661960	1299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	30
4399	ENST00000442231.1_3	ENST00000239761.3	chr10	18151815	18154400	AC069023.1	-	lncRNA	chr10	18098351	18200091	MRC1	+	protein_coding	2585	opposite	2464_ID	chr10	18151816	18154400	2585	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	30
4801	ENST00000453778.1_3	ENST00000318967.7_3	chr1	153719326	153723703	AL513523.4	-	lncRNA	chr1	153700525	153747284	INTS3	+	protein_coding	4377	opposite	5715_ID	chr1	153719327	153723703	4377	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	30
4877	ENST00000455866.1_1	ENST00000399537.8_3	chr7	5459476	5462753	AC092171.1	+	lncRNA	chr7	5346420	5463177	TNRC18	-	protein_coding	3277	opposite	3067_ID	chr7	5459477	5462753	3277	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	30
4940	ENST00000457315.1_3	ENST00000395891.7_3	chr7	43278664	43288867	AC004692.2	-	lncRNA	chr7	43152245	43605600	HECW1	+	protein_coding	10203	opposite	158_ID	chr7	43278665	43288867	10203	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	30
5346	ENST00000473281.2	ENST00000464233.6_4	chr3	78987154	78987442	RN7SL751P	-	misc_RNA	chr3	78646388	79817148	ROBO1	-	protein_coding	288	same	10407_ID	chr3	78987155	78987442	288	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	30
5452	ENST00000480551.1_1	ENST00000328913.7_4	chr3	182971140	183014099	B3GNT5	+	processed_transcript	chr3	182895830	183146063	MCF2L2	-	protein_coding	45252	opposite	6389_ID	chr3	182971141	183014099	42959	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	30
5991	ENST00000509833.1_1	ENST00000262013.12_5	chr17	49119884	49162832	AC005920.2	+	lncRNA	chr17	49039534	49198229	SPAG9	-	protein_coding	42948	opposite	385_ID	chr17	49119885	49162832	42948	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	30
6215	ENST00000515930.1	ENST00000357207.8_1	chr4	184627083	184627184	RNU6-1053P	+	snRNA	chr4	184580419	184634747	TRAPPC11	+	protein_coding	101	same	10798_ID	chr4	184627084	184627184	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	30
6273	ENST00000516110.1	ENST00000334456.10_5	chr11	72332809	72332871	RNU7-105P	+	snRNA	chr11	72287184	72385466	PDE2A	-	protein_coding	62	opposite	11695_ID	chr11	72332810	72332871	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	30
6506	ENST00000516794.1	ENST00000401548.8_3	chr22	42118046	42118135	RNU6ATAC22P	-	snRNA	chr22	42095506	42195458	MEI1	+	protein_coding	89	opposite	11668_ID	chr22	42118047	42118135	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	30
6597	ENST00000517050.1	ENST00000263253.9_4	chr22	41564220	41564320	RNU6-375P	+	snRNA	chr22	41488595	41576081	EP300	+	protein_coding	100	same	11191_ID	chr22	41564221	41564320	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	30
7317	ENST00000540912.1_1	ENST00000334456.10_5	chr11	72354280	72370451	PDE2A-AS1	+	lncRNA	chr11	72287184	72385466	PDE2A	-	protein_coding	16171	opposite	9522_ID	chr11	72354281	72370451	16171	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	30
7490	ENST00000549373.1_3	ENST00000281928.9_5	chr12	116612306	116619100	AC130895.1	-	lncRNA	chr12	116396380	116715498	MED13L	-	protein_coding	6794	same	4078_ID	chr12	116612307	116619100	6794	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	30
7504	ENST00000550111.1_3	ENST00000258526.9_2	chr12	94665925	94670971	AC073655.1	-	lncRNA	chr12	94542352	94701451	PLXNC1	+	protein_coding	5046	opposite	2545_ID	chr12	94665926	94670971	5046	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	30
8035	ENST00000564485.1_1	ENST00000673704.1_2	chr16	9056562	9060847	AC022167.3	+	lncRNA	chr16	8985953	9069185	USP7	-	protein_coding	4285	opposite	1838_ID	chr16	9056563	9060847	4285	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	30
8150	ENST00000566922.1_1	ENST00000426508.7_5	chr16	1562979	1564676	AL031705.1	+	lncRNA	chr16	1560427	1662073	IFT140	-	protein_coding	1697	opposite	4546_ID	chr16	1562980	1564676	1697	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	30
8190	ENST00000567545.1_1	ENST00000389202.3_2	chr16	31413885	31416020	AC093520.1	+	lncRNA	chr16	31404655	31437826	ITGAD	+	protein_coding	2135	same	3214_ID	chr16	31413886	31416020	2135	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	30
8213	ENST00000568149.1_3	ENST00000426508.7_5	chr16	1629242	1630309	AL133297.1	-	lncRNA	chr16	1560427	1662073	IFT140	-	protein_coding	1067	same	4835_ID	chr16	1629243	1630309	1067	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	30
8327	ENST00000571741.1_1	ENST00000263087.9_4	chr17	3624921	3625782	AC116914.2	+	lncRNA	chr17	3617921	3704482	ITGAE	-	protein_coding	861	opposite	3921_ID	chr17	3624922	3625782	861	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	30
8351	ENST00000573040.1_1	ENST00000299167.12_2	chr16	47563100	47563827	AC007599.2	+	lncRNA	chr16	47495236	47735434	PHKB	+	protein_coding	727	same	612_ID	chr16	47563101	47563827	727	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	30
8595	ENST00000577966.1	ENST00000343674.10_2	chr11	46397951	46398034	MIR4688	+	miRNA	chr11	46354454	46402104	DGKZ	+	protein_coding	83	same	8674_ID	chr11	46397952	46398034	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	30
8600	ENST00000578007.1	ENST00000281928.9_5	chr12	116693687	116693793	AC060226.1	-	miRNA	chr12	116396380	116715498	MED13L	-	protein_coding	106	same	2343_ID	chr12	116693688	116693793	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	30
8740	ENST00000578897.1_1	ENST00000332175.12_2	chr18	8402844	8405159	AP001094.2	+	lncRNA	chr18	7566779	8406859	PTPRM	+	protein_coding	2315	same	6092_ID	chr18	8402845	8405159	2315	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	30
8843	ENST00000579509.1_3	ENST00000332175.12_2	chr18	7741307	7749441	AP000897.2	-	lncRNA	chr18	7566779	8406859	PTPRM	+	protein_coding	13522	opposite	6049_ID	chr18	7741308	7749441	8134	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	30
8845	ENST00000579521.1	ENST00000464233.6_4	chr3	79557036	79557119	MIR3923	+	miRNA	chr3	78646388	79817148	ROBO1	-	protein_coding	83	opposite	8428_ID	chr3	79557037	79557119	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	30
8947	ENST00000580097.1	ENST00000332175.12_2	chr18	7840934	7841058	AP005118.1	+	miRNA	chr18	7566779	8406859	PTPRM	+	protein_coding	124	same	6284_ID	chr18	7840935	7841058	124	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	30
9013	ENST00000580491.1_3	ENST00000332175.12_2	chr18	8360817	8367032	AP001094.3	-	lncRNA	chr18	7566779	8406859	PTPRM	+	protein_coding	6215	opposite	6093_ID	chr18	8360818	8367032	6215	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	30
9117	ENST00000580969.1	ENST00000584601.5_1	chr17	37882747	37882814	MIR4728	+	miRNA	chr17	37844166	37884614	ERBB2	+	protein_coding	67	same	8717_ID	chr17	37882748	37882814	67	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	30
9182	ENST00000581382.1	ENST00000336926.11_4	chr7	75209958	75210221	RN7SL642P	-	misc_RNA	chr7	75162618	75368259	HIP1	-	protein_coding	263	same	10330_ID	chr7	75209959	75210221	263	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	30
9655	ENST00000584036.1_1	ENST00000332175.12_2	chr18	7814115	7815728	AP000897.1	+	lncRNA	chr18	7566779	8406859	PTPRM	+	protein_coding	77620	same	6048_ID	chr18	7814116	7815728	1613	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	30
9988	ENST00000587933.1_1	ENST00000400345.8_2	chr18	56038797	56039898	AC090236.2	+	lncRNA	chr18	55711457	56068771	NEDD4L	+	protein_coding	1101	same	2885_ID	chr18	56038798	56039898	1101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	30
10113	ENST00000592429.1_1	ENST00000588552.5_3	chr19	5178129	5178475	AC022517.1	+	lncRNA	chr19	5158505	5340814	PTPRS	-	processed_transcript	346	opposite	1881_ID	chr19	5178130	5178475	346	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	29	30
10142	ENST00000593212.5_3	ENST00000400345.8_2	chr18	55857065	55862908	AC107896.1	-	lncRNA	chr18	55711457	56068771	NEDD4L	+	protein_coding	5863	opposite	3701_ID	chr18	55857066	55862908	5843	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	30
10476	ENST00000602615.1_1	ENST00000530997.7_6	chr14	51190494	51190990	AL606834.2	-	lncRNA	chr14	51186480	51297880	NIN	-	protein_coding	496	same	5843_ID	chr14	51190495	51190990	496	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	30	30
10748	ENST00000606837.1	ENST00000334456.10_5	chr11	72326106	72326174	MIR139	-	miRNA	chr11	72287184	72385466	PDE2A	-	protein_coding	68	same	8093_ID	chr11	72326107	72326174	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	30
10801	ENST00000607338.1_1	ENST00000544028.5_3	chr1	52266699	52266979	AL050343.3	+	lncRNA	chr1	52254867	52344609	NRDC	-	protein_coding	280	opposite	4656_ID	chr1	52266700	52266979	280	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	30
10956	ENST00000608943.1_1	ENST00000332175.12_2	chr18	8154555	8155068	AC006566.1	+	lncRNA	chr18	7566779	8406859	PTPRM	+	protein_coding	513	same	484_ID	chr18	8154556	8155068	513	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	30
11486	ENST00000619774.1_1	ENST00000588552.5_3	chr19	5294257	5294707	AC005790.1	+	lncRNA	chr19	5158505	5340814	PTPRS	-	processed_transcript	450	opposite	358_ID	chr19	5294258	5294707	450	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	30
11548	ENST00000621246.1_1	ENST00000251143.9_3	chr16	19705356	19705750	AC002550.2	-	lncRNA	chr16	19566736	19712485	VPS35L	+	protein_coding	394	opposite	67_ID	chr16	19705357	19705750	394	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	29	30
11795	ENST00000630777.2_2	ENST00000313070.11_3	chr7	121968545	122080442	AC004594.1	+	lncRNA	chr7	121958478	122526813	CADPS2	-	protein_coding	111920	opposite	146_ID	chr7	121968546	122080442	111897	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	30
11848	ENST00000635735.1_1	ENST00000380875.7_3	chr9	14790632	14791156	AL512643.1	+	lncRNA	chr9	14737197	14910993	FREM1	-	nonsense_mediated_decay	524	opposite	5691_ID	chr9	14790633	14791156	524	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	30
12264	ENST00000652284.1_3	ENST00000296585.10_2	chr5	52320753	52331714	AC008966.3	-	lncRNA	chr5	52285181	52390609	ITGA2	+	protein_coding	10961	opposite	839_ID	chr5	52320754	52331714	10961	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	30
12571	ENST00000658686.1_1	ENST00000380875.7_3	chr9	14779927	14784115	AL512643.2	+	lncRNA	chr9	14737197	14910993	FREM1	-	nonsense_mediated_decay	4188	opposite	5692_ID	chr9	14779928	14784115	4188	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	30
12640	ENST00000660095.1_3	ENST00000332175.12_2	chr18	8133200	8136030	AC006566.2	-	lncRNA	chr18	7566779	8406859	PTPRM	+	protein_coding	2830	opposite	485_ID	chr18	8133201	8136030	2830	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	30
12671	ENST00000660849.1_1	ENST00000464233.6_4	chr3	79460863	79519808	AC117461.1	+	lncRNA	chr3	78646388	79817148	ROBO1	-	protein_coding	59114	opposite	3930_ID	chr3	79460864	79519808	58945	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	30
13017	ENST00000668117.1_3	ENST00000332175.12_2	chr18	8012254	8016563	AP005900.1	-	lncRNA	chr18	7566779	8406859	PTPRM	+	protein_coding	4309	opposite	6307_ID	chr18	8012255	8016563	4309	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	30
63801	ENST00000516405.1	ENST00000394019.6_3	chr2	74546525	74546628	RNU6-542P	+	snRNA	chr2	74443368	74570534	SLC4A5	-	protein_coding	103	opposite	11325_ID	chr2	74546526	74546628	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	30
118051	ENST00000630806.1_3	ENST00000456570.5_3	chr6	31902250	31909501	C2-AS1	-	lncRNA	chr6	31895474	31919825	AL645922.1	+	protein_coding	7251	opposite	6500_ID	chr6	31902251	31909501	7251	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	30
217	ENST00000277491.7	ENST00000487727.2	chr9	133274028	133282639	AL354898.1	+	protein_coding	chr9	133259835	133294969	HMCN2	+	processed_transcript	8611	same	5297_ID	chr9	133274029	133282639	8611	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	29
478	ENST00000322220.1_1	ENST00000395891.7_3	chr7	43157494	43202786	HECW1-IT1	+	lncRNA	chr7	43152245	43605600	HECW1	+	protein_coding	45292	same	7225_ID	chr7	43157495	43202786	45292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
590	ENST00000334994.6_2	ENST00000325324.11_2	chr5	61874645	61877273	LRRC70	+	protein_coding	chr5	61708589	61924409	IPO11	+	protein_coding	2628	same	7866_ID	chr5	61874646	61877273	2628	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	29
625	ENST00000340112.3_3	ENST00000313070.11_3	chr7	122337788	122339171	RNF133	-	protein_coding	chr7	121958478	122526813	CADPS2	-	protein_coding	1383	same	10541_ID	chr7	122337789	122339171	1383	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
649	ENST00000342963.2_1	ENST00000399537.8_3	chr7	5459457	5460398	AC093620.1	+	lncRNA	chr7	5346420	5463177	TNRC18	-	protein_coding	941	opposite	3228_ID	chr7	5459458	5460398	941	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
891	ENST00000362827.1	ENST00000303375.10_2	chr17	60761265	60761371	RNU6-446P	+	snRNA	chr17	60705030	60770958	MRC2	+	protein_coding	106	same	11251_ID	chr17	60761266	60761371	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	29
995	ENST00000363434.1	ENST00000518721.6_5	chr8	131081786	131081898	RNU6-1255P	-	snRNA	chr8	131064349	131455920	ASAP1	-	protein_coding	112	same	10951_ID	chr8	131081787	131081898	112	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	29
1025	ENST00000363574.1	ENST00000286744.10_4	chr15	84493614	84493705	RNU6-1339P	-	snRNA	chr15	84322874	84708594	ADAMTSL3	+	protein_coding	91	opposite	11020_ID	chr15	84493615	84493705	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	29
1120	ENST00000364072.1	ENST00000367302.5_3	chr1	201702533	201702633	RNU6-501P	+	snRNA	chr1	201592054	201792472	NAV1	+	protein_coding	100	same	11286_ID	chr1	201702534	201702633	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	29
1699	ENST00000383981.1	ENST00000302328.9_5	chr3	39067477	39067584	RNU6-1227P	+	snRNA	chr3	38887254	39093435	SCN11A	-	protein_coding	107	opposite	10927_ID	chr3	39067478	39067584	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
2162	ENST00000385091.1	ENST00000635855.1_1	chr8	1765396	1765473	MIR596	+	miRNA	chr8	1712053	1906793	AC019257.8	+	nonsense_mediated_decay	77	same	8998_ID	chr8	1765397	1765473	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
2189	ENST00000385202.1	ENST00000331429.2	chr10	17887106	17887193	MIR511-1	+	miRNA	chr10	17851361	17953178	MRC1L1	+	protein_coding	87	same	8840_ID	chr10	17887107	17887193	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	29
2190	ENST00000385203.1	ENST00000239761.3	chr10	18134035	18134122	MIR511-2	+	miRNA	chr10	18098351	18200091	MRC1	+	protein_coding	87	same	8841_ID	chr10	18134036	18134122	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	29
2406	ENST00000391072.1	ENST00000286744.10_4	chr15	84386178	84386274	RNU6-401P	+	snRNA	chr15	84322874	84708594	ADAMTSL3	+	protein_coding	96	same	11210_ID	chr15	84386179	84386274	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	29
2593	ENST00000401270.1	ENST00000644474.1_2	chr4	160216865	160216935	AC105316.1	+	miRNA	chr4	160024164	160281326	RAPGEF2	+	protein_coding	70	same	3612_ID	chr4	160216866	160216935	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	29
2653	ENST00000408101.1	ENST00000367302.5_3	chr1	201777738	201777830	MIR1231	+	miRNA	chr1	201592054	201792472	NAV1	+	protein_coding	92	same	7990_ID	chr1	201777739	201777830	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	29
2757	ENST00000408375.1	ENST00000397786.7_4	chr17	60093217	60093298	AC018628.1	-	miRNA	chr17	60019965	60142639	MED13	-	protein_coding	81	same	1639_ID	chr17	60093218	60093298	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	29
2833	ENST00000408557.1	ENST00000286744.10_4	chr15	84657984	84658097	AC027807.1	-	miRNA	chr15	84322874	84708594	ADAMTSL3	+	protein_coding	113	opposite	2236_ID	chr15	84657985	84658097	113	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	29
2860	ENST00000408623.1	ENST00000373779.8_4	chr1	29580053	29580195	AL645859.1	-	miRNA	chr1	29563033	29653312	PTPRU	+	protein_coding	142	opposite	5866_ID	chr1	29580054	29580195	142	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	29
2950	ENST00000408826.1	ENST00000617334.1_4	chr8	101036209	101036312	MIR1273A	-	miRNA	chr8	100973167	101118344	RGS22	-	protein_coding	103	same	8030_ID	chr8	101036210	101036312	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	29
3239	ENST00000411258.1	ENST00000373201.5_3	chr20	41691965	41692249	RN7SKP100	+	misc_RNA	chr20	40701391	41818610	PTPRT	-	protein_coding	284	opposite	9759_ID	chr20	41691966	41692249	284	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	29
3247	ENST00000411326.1	ENST00000395891.7_3	chr7	43247360	43247465	RNU6-575P	-	snRNA	chr7	43152245	43605600	HECW1	+	protein_coding	105	opposite	11348_ID	chr7	43247361	43247465	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
3270	ENST00000411417.1_1	ENST00000648585.1_1	chr1	74934196	74935227	AC105271.1	+	lncRNA	chr1	74663939	75010077	FPGT-TNNI3K	+	nonsense_mediated_decay	1349	same	3610_ID	chr1	74934197	74935227	1031	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	29
3328	ENST00000412519.1_1	ENST00000373201.5_3	chr20	41597382	41600132	PTPRT-AS1	+	lncRNA	chr20	40701391	41818610	PTPRT	-	protein_coding	2750	opposite	9682_ID	chr20	41597383	41600132	2750	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	29
3352	ENST00000413246.1_3	ENST00000379274.6_1	chr13	42617862	42618383	AL157932.1	-	lncRNA	chr13	42614171	42803891	DGKH	+	protein_coding	521	opposite	5087_ID	chr13	42617863	42618383	521	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	29
3874	ENST00000427571.1_3	ENST00000373563.9_6	chr2	233624855	233632659	AC064852.1	-	lncRNA	chr2	233562040	233725315	GIGYF2	+	protein_coding	7804	opposite	2363_ID	chr2	233624856	233632659	7804	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	29
3937	ENST00000429443.1_3	ENST00000367302.5_3	chr1	201692421	201706634	AL645504.1	-	lncRNA	chr1	201592054	201792472	NAV1	+	protein_coding	14213	opposite	5855_ID	chr1	201692422	201706634	14213	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	29
4129	ENST00000434824.2_3	ENST00000313070.11_3	chr7	122341721	122342976	RNF148	-	protein_coding	chr7	121958478	122526813	CADPS2	-	protein_coding	1255	same	10542_ID	chr7	122341722	122342976	1255	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
4151	ENST00000435295.1_3	ENST00000461783.7_6	chr6	155574272	155577858	AL596202.1	-	lncRNA	chr6	155153830	155578857	TIAM2	+	protein_coding	3586	opposite	5824_ID	chr6	155574273	155577858	3586	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	27	29
4329	ENST00000440322.5_1	ENST00000652557.1_3	chr2	166790366	166806401	TTC21B-AS1	+	lncRNA	chr2	166723890	166810326	TTC21B	-	nonsense_mediated_decay	16035	opposite	12808_ID	chr2	166790367	166806401	16035	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	29
4456	ENST00000444085.1_3	ENST00000361828.7_2	chr3	193336397	193345126	OPA1-AS1	-	lncRNA	chr3	193310932	193415600	OPA1	+	protein_coding	8729	opposite	9338_ID	chr3	193336398	193345126	8729	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	29
4553	ENST00000446789.2_3	ENST00000375608.7_3	chr13	113621797	113623138	MCF2L-AS1	-	lncRNA	chr13	113548691	113751175	MCF2L	+	protein_coding	1341	opposite	7929_ID	chr13	113621798	113623138	1341	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
4645	ENST00000449492.1_4	ENST00000367302.5_3	chr1	201642232	201643272	AC092800.1	-	lncRNA	chr1	201592054	201792472	NAV1	+	protein_coding	1040	opposite	3150_ID	chr1	201642233	201643272	1040	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	29
4714	ENST00000451545.1_1	ENST00000545172.5_3	chr1	167789643	167790462	Z99943.1	+	lncRNA	chr1	167778624	167883453	ADCY10	-	protein_coding	819	opposite	12992_ID	chr1	167789644	167790462	819	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	29
4955	ENST00000457704.2_1	ENST00000373201.5_3	chr20	41314122	41317202	AL031656.1	+	lncRNA	chr20	40701391	41818610	PTPRT	-	protein_coding	3159	opposite	4535_ID	chr20	41314123	41317202	3080	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	29
4972	ENST00000458367.1_1	ENST00000368226.9_4	chr6	128821671	128822321	AL034349.1	+	lncRNA	chr6	128289929	128841744	PTPRK	-	protein_coding	650	opposite	4581_ID	chr6	128821672	128822321	650	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	29
4984	ENST00000458661.6_1	ENST00000638991.1_4	chr10	78647833	78738351	KCNMA1-AS1	+	lncRNA	chr10	78629359	79397577	KCNMA1	-	protein_coding	92581	opposite	7422_ID	chr10	78647834	78738351	90518	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	29
5182	ENST00000462370.2	ENST00000383710.9_7	chr3	62781800	62782094	RN7SL863P	-	misc_RNA	chr3	62384022	62861091	CADPS	-	protein_coding	294	same	10490_ID	chr3	62781801	62782094	294	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	29
5377	ENST00000475092.4_5	ENST00000282406.9_2	chr2	43902289	43903568	C1GALT1C1L	-	protein_coding	chr2	43864398	43995126	PLEKHH2	+	protein_coding	1279	opposite	6493_ID	chr2	43902290	43903568	1279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
5381	ENST00000475222.2	ENST00000314607.11_2	chr1	35757800	35758099	RN7SL503P	-	misc_RNA	chr1	35734309	35887659	ZMYM4	+	protein_coding	299	opposite	10236_ID	chr1	35757801	35758099	299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	29
5512	ENST00000484823.2	ENST00000397786.7_4	chr17	60083099	60083348	RN7SL800P	-	misc_RNA	chr17	60019965	60142639	MED13	-	protein_coding	249	same	10443_ID	chr17	60083100	60083348	249	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	29
5652	ENST00000494330.2	ENST00000519949.5_1	chr5	170293838	170294146	RN7SL623P	+	misc_RNA	chr5	170289021	170727019	RANBP17	+	nonsense_mediated_decay	308	same	10316_ID	chr5	170293839	170294146	308	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	29
6342	ENST00000516304.1	ENST00000611820.5_3	chrX	44744750	44744811	RNU6-523P	+	snRNA	chrX	44732433	44972024	KDM6A	+	protein_coding	61	same	11307_ID	chrX	44744751	44744811	61	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
6366	ENST00000516375.1	ENST00000474889.6_3	chr3	62103973	62104184	RNU2-10P	-	snRNA	chr3	61547244	62283284	PTPRG	+	protein_coding	211	opposite	10618_ID	chr3	62103974	62104184	211	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	29
6456	ENST00000516640.1	ENST00000383710.9_7	chr3	62800056	62800166	RNU6-139P	+	snRNA	chr3	62384022	62861091	CADPS	-	protein_coding	110	opposite	11027_ID	chr3	62800057	62800166	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	29
6604	ENST00000517067.1	ENST00000648685.1_2	chr16	31278757	31278812	RNU7-199P	-	snRNA	chr16	31271287	31344213	ITGAM	+	protein_coding	55	opposite	11763_ID	chr16	31278758	31278812	55	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	29
6650	ENST00000517174.1	ENST00000395891.7_3	chr7	43234019	43234081	RNU7-35P	+	snRNA	chr7	43152245	43605600	HECW1	+	protein_coding	62	same	11774_ID	chr7	43234020	43234081	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
6714	ENST00000517408.1_3	ENST00000518659.5_1	chr5	167512333	167614724	AC011369.1	-	lncRNA	chr5	166711803	167690001	TENM2	+	protein_coding	102391	opposite	1197_ID	chr5	167512334	167614724	102391	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	29
6777	ENST00000519140.1_1	ENST00000318410.12_4	chr8	126052925	126057231	WASHC5-AS1	+	lncRNA	chr8	126036501	126104034	WASHC5	-	protein_coding	4306	opposite	12904_ID	chr8	126052926	126057231	4306	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	21	29
6897	ENST00000523050.1_3	ENST00000518659.5_1	chr5	167364721	167380474	AC008464.1	-	lncRNA	chr5	166711803	167690001	TENM2	+	protein_coding	15753	opposite	735_ID	chr5	167364722	167380474	15753	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	29
7095	ENST00000530422.1_1	ENST00000325212.11_5	chr11	93454678	93455031	SCARNA9	+	lncRNA	chr11	93394847	93463524	CEP295	+	protein_coding	353	same	12000_ID	chr11	93454679	93455031	353	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	29
7479	ENST00000549036.1_3	ENST00000644049.1_1	chr12	101432197	101432872	AC063947.1	-	lncRNA	chr12	101111303	101522065	ANO4	+	protein_coding	675	opposite	2354_ID	chr12	101432198	101432872	675	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	29
7540	ENST00000552332.1_3	ENST00000644049.1_1	chr12	101246108	101253040	AC138360.1	-	lncRNA	chr12	101111303	101522065	ANO4	+	protein_coding	6932	opposite	4185_ID	chr12	101246109	101253040	6932	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	29
7835	ENST00000560337.1_3	ENST00000339362.9_3	chr15	73547674	73548450	AC068397.1	-	lncRNA	chr15	73344050	73597546	NEO1	+	protein_coding	776	opposite	2404_ID	chr15	73547675	73548450	776	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	29
7847	ENST00000560560.4_3	ENST00000220244.7_1	chr15	81188531	81202118	AC027808.2	-	lncRNA	chr15	81071683	81244117	CEMIP	+	protein_coding	13587	opposite	2239_ID	chr15	81188532	81202118	13587	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	29
7860	ENST00000560873.1_3	ENST00000220244.7_1	chr15	81188530	81241208	AC027808.1	-	lncRNA	chr15	81071683	81244117	CEMIP	+	protein_coding	52678	opposite	2238_ID	chr15	81188531	81241208	52678	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	29
8438	ENST00000577188.1	ENST00000644474.1_2	chr4	160044784	160044836	AC095064.1	-	miRNA	chr4	160024164	160281326	RAPGEF2	+	protein_coding	52	opposite	3266_ID	chr4	160044785	160044836	52	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	29
8489	ENST00000577455.1	ENST00000367302.5_3	chr1	201688635	201688755	MIR5191	+	miRNA	chr1	201592054	201792472	NAV1	+	protein_coding	120	same	8853_ID	chr1	201688636	201688755	120	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	29
8939	ENST00000580028.1	ENST00000647658.1_3	chr1	196551542	196551611	MIR4735	-	miRNA	chr1	196194936	196577625	KCNT2	-	nonsense_mediated_decay	69	same	8722_ID	chr1	196551543	196551611	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	29
9088	ENST00000580846.1	ENST00000264839.11_3	chr6	72936409	72936533	AL445256.1	-	miRNA	chr6	72596726	73112845	RIMS1	+	protein_coding	124	opposite	5619_ID	chr6	72936410	72936533	124	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	29
9174	ENST00000581346.1	ENST00000389857.11_4	chr14	91800056	91800167	AL133153.1	+	miRNA	chr14	91737666	91884164	CCDC88C	-	protein_coding	111	opposite	4821_ID	chr14	91800057	91800167	111	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	29
9496	ENST00000583129.1	ENST00000397042.7_1	chr20	37145205	37145275	MIR548O2	+	miRNA	chr20	37101458	37207502	RALGAPB	+	protein_coding	70	same	8912_ID	chr20	37145206	37145275	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	29
9552	ENST00000583455.1	ENST00000644474.1_2	chr4	160049953	160050046	MIR3688-2	-	miRNA	chr4	160024164	160281326	RAPGEF2	+	protein_coding	93	opposite	8390_ID	chr4	160049954	160050046	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	29
9841	ENST00000585069.1	ENST00000395891.7_3	chr7	43190493	43190593	MIR3943	+	miRNA	chr7	43152245	43605600	HECW1	+	protein_coding	100	same	8441_ID	chr7	43190494	43190593	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
10127	ENST00000592906.1_3	ENST00000307671.12_3	chr18	77100257	77103972	AC023090.1	-	lncRNA	chr18	76829396	77138287	ATP9B	+	protein_coding	3715	opposite	1931_ID	chr18	77100258	77103972	3715	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	29
10315	ENST00000598534.1_1	ENST00000375608.7_3	chr13	113663984	113664633	AL356740.3	+	lncRNA	chr13	113548691	113751175	MCF2L	+	protein_coding	649	same	5395_ID	chr13	113663985	113664633	649	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
10319	ENST00000598703.1_1	ENST00000613525.4_3	chr19	8614389	8615023	AC092316.1	+	lncRNA	chr19	8585680	8642461	MYO1F	-	protein_coding	634	opposite	3075_ID	chr19	8614390	8615023	634	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	29
10414	ENST00000601559.1_1	ENST00000375608.7_3	chr13	113663091	113663738	AL356740.2	+	lncRNA	chr13	113548691	113751175	MCF2L	+	protein_coding	647	same	5394_ID	chr13	113663092	113663738	647	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
10426	ENST00000602192.1_1	ENST00000375608.7_3	chr13	113619148	113620445	AL356740.1	-	lncRNA	chr13	113548691	113751175	MCF2L	+	protein_coding	1297	opposite	5393_ID	chr13	113619149	113620445	1297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
10674	ENST00000606157.1_1	ENST00000296585.10_2	chr5	52384845	52385298	AC008966.2	-	lncRNA	chr5	52285181	52390609	ITGA2	+	protein_coding	453	opposite	838_ID	chr5	52384846	52385298	453	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	29
11332	ENST00000616099.1_1	ENST00000286744.10_4	chr15	84630927	84631335	AC027807.2	+	lncRNA	chr15	84322874	84708594	ADAMTSL3	+	protein_coding	408	same	2237_ID	chr15	84630928	84631335	408	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	29
11375	ENST00000617114.5_3	ENST00000326735.13_4	chr1	17331562	17338252	AL049569.3	-	protein_coding	chr1	17312452	17338423	ATP13A2	-	protein_coding	6690	same	4626_ID	chr1	17331563	17338252	6690	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	29
11749	ENST00000626977.1_1	ENST00000518721.6_5	chr8	131094983	131097014	ASAP1-IT2	-	lncRNA	chr8	131064349	131455920	ASAP1	-	protein_coding	2031	same	6350_ID	chr8	131094984	131097014	2031	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	29
12029	ENST00000647929.1_1	ENST00000397786.7_4	chr17	60113304	60117713	AC018628.2	+	lncRNA	chr17	60019965	60142639	MED13	-	protein_coding	4409	opposite	1640_ID	chr17	60113305	60117713	4409	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	29
12108	ENST00000648967.1_3	ENST00000355044.8_2	chr10	116883245	116978577	AC016042.1	-	lncRNA	chr10	116853123	117708510	ATRNL1	+	protein_coding	95332	opposite	1518_ID	chr10	116883246	116978577	95332	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	29
12296	ENST00000652796.1_3	ENST00000282588.7_2	chr5	52149016	52168759	AC022133.2	-	lncRNA	chr5	52083749	52255039	ITGA1	+	protein_coding	19743	opposite	1826_ID	chr5	52149017	52168759	19743	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	29
12395	ENST00000655343.1_1	ENST00000389048.8_6	chr2	29542419	29575080	AC074096.1	+	lncRNA	chr2	29415639	30144452	ALK	-	protein_coding	32661	opposite	2569_ID	chr2	29542420	29575080	32661	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	29
12594	ENST00000659092.1_3	ENST00000635855.1_1	chr8	1758988	1765279	AC100810.7	-	lncRNA	chr8	1712053	1906793	AC019257.8	+	nonsense_mediated_decay	6291	opposite	3424_ID	chr8	1758989	1765279	6291	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
12615	ENST00000659449.1_1	ENST00000518721.6_5	chr8	131260532	131263297	AC009682.1	+	lncRNA	chr8	131064349	131455920	ASAP1	-	protein_coding	2765	opposite	985_ID	chr8	131260533	131263297	2765	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	29
12691	ENST00000661159.1_1	ENST00000359015.5_4	chr6	137105182	137107418	AL121933.2	+	lncRNA	chr6	136878183	137113615	MAP3K5	-	protein_coding	2236	opposite	4780_ID	chr6	137105183	137107418	2236	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	29
12903	ENST00000665729.1_1	ENST00000518721.6_5	chr8	131371032	131374707	AC139019.1	+	lncRNA	chr8	131064349	131455920	ASAP1	-	protein_coding	3675	opposite	4201_ID	chr8	131371033	131374707	3675	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
83410	ENST00000362409.1	ENST00000325324.11_2	chr5	61739002	61739109	RNU6-661P	+	snRNA	chr5	61708589	61924409	IPO11	+	protein_coding	107	same	11417_ID	chr5	61739003	61739109	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	29
28471	ENST00000408591.1	ENST00000394830.7_5	chr3	52594585	52594723	RNU6ATAC16P	+	snRNA	chr3	52581856	52719852	PBRM1	-	protein_coding	138	opposite	11666_ID	chr3	52594586	52594723	138	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	29
37331	ENST00000422931.2_1	ENST00000341547.8_3	chr13	76205406	76206271	AL137244.1	+	lncRNA	chr13	76194569	76434006	LMO7	+	protein_coding	865	same	4951_ID	chr13	76205407	76206271	865	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	29
65691	ENST00000516959.1	ENST00000394830.7_5	chr3	52585861	52585959	RNU6-856P	-	snRNA	chr3	52581856	52719852	PBRM1	-	protein_coding	98	same	11563_ID	chr3	52585862	52585959	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	29
94321	ENST00000582753.1	ENST00000337343.9_2	chr13	42747125	42747223	AL139328.1	-	miRNA	chr13	42622783	42817032	DGKH	+	protein_coding	98	opposite	5036_ID	chr13	42747126	42747223	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	29
61	ENST00000233826.4_4	ENST00000373563.9_6	chr2	233630511	233641275	KCNJ13	-	protein_coding	chr2	233562040	233725315	GIGYF2	+	protein_coding	10764	opposite	7419_ID	chr2	233630512	233641275	10764	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	28
389	ENST00000310392.5_4	ENST00000498289.5_1	chr1	169761669	169764048	METTL18	-	protein_coding	chr1	169631244	169822226	C1orf112	+	processed_transcript	2435	opposite	7943_ID	chr1	169761670	169764048	2379	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	28
669	ENST00000349529.2	ENST00000636391.2_2	chr14	101495970	101496051	MIR494	+	miRNA	chr14	101432981	101505196	MEG8	+	lncRNA	81	same	8800_ID	chr14	101495971	101496051	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	28
722	ENST00000359823.2_1	ENST00000389048.8_6	chr2	30122462	30130065	AC106870.1	+	lncRNA	chr2	29415639	30144452	ALK	-	protein_coding	7603	opposite	3661_ID	chr2	30122463	30130065	7603	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
750	ENST00000362112.2	ENST00000636391.2_2	chr14	101491330	101491441	MIR380	-	miRNA	chr14	101432981	101505196	MEG8	+	lncRNA	111	opposite	8409_ID	chr14	101491331	101491441	111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	28
780	ENST00000362199.1	ENST00000636391.2_2	chr14	101492068	101492154	MIR323A	+	miRNA	chr14	101432981	101505196	MEG8	+	lncRNA	86	same	8317_ID	chr14	101492069	101492154	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	28
789	ENST00000362218.3	ENST00000636391.2_2	chr14	101488365	101488491	MIR379	+	miRNA	chr14	101432981	101505196	MEG8	+	lncRNA	126	same	8408_ID	chr14	101488366	101488491	126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	28
797	ENST00000362239.2	ENST00000636391.2_2	chr14	101489661	101489757	MIR411	+	miRNA	chr14	101432981	101505196	MEG8	+	lncRNA	96	same	8449_ID	chr14	101489662	101489757	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	28
952	ENST00000363219.1	ENST00000636391.2_2	chr14	101459572	101459647	SNORD114-31	+	snoRNA	chr14	101432981	101505196	MEG8	+	lncRNA	75	same	12276_ID	chr14	101459573	101459647	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	28
1020	ENST00000363543.1	ENST00000636391.2_2	chr14	101453382	101453454	SNORD114-26	+	snoRNA	chr14	101432981	101505196	MEG8	+	lncRNA	72	same	12270_ID	chr14	101453383	101453454	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	13	28
1032	ENST00000363610.1	ENST00000636391.2_2	chr14	101455466	101455538	SNORD114-28	+	snoRNA	chr14	101432981	101505196	MEG8	+	lncRNA	72	same	12272_ID	chr14	101455467	101455538	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	28
1060	ENST00000363766.1	ENST00000636391.2_2	chr14	101454497	101454567	SNORD114-27	+	snoRNA	chr14	101432981	101505196	MEG8	+	lncRNA	70	same	12271_ID	chr14	101454498	101454567	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	28
1188	ENST00000364448.1	ENST00000636391.2_2	chr14	101458255	101458327	SNORD114-30	+	snoRNA	chr14	101432981	101505196	MEG8	+	lncRNA	72	same	12275_ID	chr14	101458256	101458327	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	28
1265	ENST00000364819.1	ENST00000636391.2_2	chr14	101456427	101456497	SNORD114-29	+	snoRNA	chr14	101432981	101505196	MEG8	+	lncRNA	70	same	12273_ID	chr14	101456428	101456497	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	28
1271	ENST00000364876.1	ENST00000672724.1_1	chr1	10223325	10223432	RNU6-828P	+	snRNA	chr1	10092889	10241297	UBE4B	+	protein_coding	107	same	11535_ID	chr1	10223326	10223432	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	28
2060	ENST00000384901.1	ENST00000370557.5_4	chrX	139006306	139006390	MIR505	-	miRNA	chrX	138808504	139015229	ATP11C	-	protein_coding	84	same	8822_ID	chrX	139006307	139006390	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
2086	ENST00000384971.2	ENST00000521903.5_3	chr8	124360273	124360370	MIR548AA1	+	miRNA	chr8	124332741	124428590	ATAD2	-	protein_coding	97	opposite	8867_ID	chr8	124360274	124360370	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	28
2096	ENST00000384987.1	ENST00000677213.1_1	chr1	155316140	155316236	MIR555	-	miRNA	chr1	155305077	155532953	ASH1L	-	protein_coding	96	same	8930_ID	chr1	155316141	155316236	96	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	21	28
2110	ENST00000385010.1	ENST00000636391.2_2	chr14	101500091	101500173	MIR495	+	miRNA	chr14	101432981	101505196	MEG8	+	lncRNA	82	same	8801_ID	chr14	101500092	101500173	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	28
2113	ENST00000385016.2	ENST00000636391.2_2	chr14	101490113	101490215	MIR299	+	miRNA	chr14	101432981	101505196	MEG8	+	lncRNA	102	same	8214_ID	chr14	101490114	101490215	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	28
2122	ENST00000385028.1	ENST00000636391.2_2	chr14	101493121	101493201	MIR329-1	+	miRNA	chr14	101432981	101505196	MEG8	+	lncRNA	80	same	8322_ID	chr14	101493122	101493201	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	28
2123	ENST00000385029.1	ENST00000636391.2_2	chr14	101493436	101493520	MIR329-2	+	miRNA	chr14	101432981	101505196	MEG8	+	lncRNA	84	same	8323_ID	chr14	101493437	101493520	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	28
2233	ENST00000385262.1	ENST00000664852.1_1	chr20	33054129	33054223	MIR644A	+	miRNA	chr20	32951111	33128552	ITCH	+	nonsense_mediated_decay	94	same	9052_ID	chr20	33054130	33054223	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	28
2238	ENST00000385268.1	ENST00000220244.7_1	chr15	81134318	81134414	MIR549	-	miRNA	chr15	81071683	81244117	CEMIP	+	protein_coding	96	opposite	8923_ID	chr15	81134319	81134414	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
2309	ENST00000390227.1	ENST00000636391.2_2	chr14	101492356	101492444	MIR758	+	miRNA	chr14	101432981	101505196	MEG8	+	lncRNA	88	same	9077_ID	chr14	101492357	101492444	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	28
2337	ENST00000390751.1	ENST00000636391.2_2	chr14	101498323	101498401	MIR543	+	miRNA	chr14	101432981	101505196	MEG8	+	lncRNA	78	same	8862_ID	chr14	101498324	101498401	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	28
2657	ENST00000408109.3	ENST00000636391.2_2	chr14	101496388	101496466	MIR1193	+	miRNA	chr14	101432981	101505196	MEG8	+	lncRNA	78	same	7974_ID	chr14	101496389	101496466	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	28
2752	ENST00000408364.1	ENST00000442544.7_3	chr18	50463663	50463773	AC090660.1	+	miRNA	chr18	49866566	51062269	DCC	+	protein_coding	110	same	2927_ID	chr18	50463664	50463773	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	28
2783	ENST00000408448.1	ENST00000370557.5_4	chrX	138967639	138967762	RNU6ATAC23P	+	snRNA	chrX	138808504	139015229	ATP11C	-	protein_coding	123	opposite	11669_ID	chrX	138967640	138967762	123	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
2944	ENST00000408814.1	ENST00000518659.5_1	chr5	167297549	167297670	AC093304.1	-	miRNA	chr5	166711803	167690001	TENM2	+	protein_coding	121	opposite	3194_ID	chr5	167297550	167297670	121	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
2946	ENST00000408818.1	ENST00000636391.2_2	chr14	101491900	101491988	MIR1197	+	miRNA	chr14	101432981	101505196	MEG8	+	lncRNA	88	same	7975_ID	chr14	101491901	101491988	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	28
3030	ENST00000410229.1	ENST00000243300.14_2	chrX	105104681	105104755	Z97356.1	+	miRNA	chrX	105066531	105202602	NRK	+	protein_coding	74	same	12968_ID	chrX	105104682	105104755	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
3061	ENST00000410388.1	ENST00000283351.10_5	chr18	29517495	29517602	RNU6-1050P	+	snRNA	chr18	29409159	29523091	TRAPPC8	-	protein_coding	107	opposite	10796_ID	chr18	29517496	29517602	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
3216	ENST00000411112.1	ENST00000306270.12_6	chr6	82920054	82920157	RNU6-130P	-	snRNA	chr6	82879703	82957461	IBTK	-	protein_coding	103	same	10999_ID	chr6	82920055	82920157	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	28
3241	ENST00000411279.1	ENST00000380548.9_2	chr9	18834834	18834925	AL158150.1	-	miRNA	chr9	18474150	18910948	ADAMTSL1	+	protein_coding	91	opposite	5099_ID	chr9	18834835	18834925	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	28
3253	ENST00000411354.1	ENST00000461783.7_6	chr6	155202415	155202504	AL121952.1	+	miRNA	chr6	155153830	155578857	TIAM2	+	protein_coding	89	same	4788_ID	chr6	155202416	155202504	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
3366	ENST00000413564.1_1	ENST00000638991.1_4	chr10	79073698	79075452	AL731575.1	+	lncRNA	chr10	78629359	79397577	KCNMA1	-	protein_coding	1754	opposite	5900_ID	chr10	79073699	79075452	1754	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
3459	ENST00000415663.1_1	ENST00000370819.5_5	chr6	56196585	56196915	AL031779.1	-	lncRNA	chr6	55921387	56258892	COL21A1	-	protein_coding	330	same	4563_ID	chr6	56196586	56196915	330	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
3526	ENST00000417612.1_3	ENST00000256509.7_4	chr3	405052	427478	CHL1-AS1	-	lncRNA	chr3	238445	451100	CHL1	+	protein_coding	22426	opposite	6639_ID	chr3	405053	427478	22426	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	28
3552	ENST00000418515.1_2	ENST00000638991.1_4	chr10	79114161	79136371	KCNMA1-AS3	+	lncRNA	chr10	78629359	79397577	KCNMA1	-	protein_coding	25763	opposite	7424_ID	chr10	79114162	79136371	22210	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
3558	ENST00000418598.1_1	ENST00000664852.1_1	chr20	33038734	33042357	ITCH-IT1	+	lncRNA	chr20	32951111	33128552	ITCH	+	nonsense_mediated_decay	3623	same	7373_ID	chr20	33038735	33042357	3623	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	28
3659	ENST00000421411.1_1	ENST00000389048.8_6	chr2	30113236	30115220	AC106870.2	+	lncRNA	chr2	29415639	30144452	ALK	-	protein_coding	1984	opposite	3663_ID	chr2	30113237	30115220	1984	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
3732	ENST00000422946.1_1	ENST00000265586.10_3	chr3	183724125	183729207	ABCC5-AS1	+	lncRNA	chr3	183637725	183735727	ABCC5	-	protein_coding	5082	opposite	8_ID	chr3	183724126	183729207	5082	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
3840	ENST00000425837.1_1	ENST00000423059.9_7	chr7	11446581	11453705	AC004160.2	+	lncRNA	chr7	11409991	11871824	THSD7A	-	protein_coding	7124	opposite	109_ID	chr7	11446582	11453705	7124	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	28
3920	ENST00000428936.5_1	ENST00000638991.1_4	chr10	78907409	78909858	KCNMA1-AS2	+	lncRNA	chr10	78629359	79397577	KCNMA1	-	protein_coding	2449	opposite	7423_ID	chr10	78907410	78909858	2449	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	28
3933	ENST00000429307.1	ENST00000637395.1_3	chr10	49363367	49364177	RP11-13E1.5	-	sense_intronic	chr10	49363354	49482732	FRMPD2	-	nonsense_mediated_decay	810	same	11877_ID	chr10	49363368	49364177	810	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	27	28
4100	ENST00000433933.1_1	ENST00000644978.2_4	chr2	197124837	197128928	HECW2-AS1	+	lncRNA	chr2	197058795	197458278	HECW2	-	protein_coding	4181	opposite	7226_ID	chr2	197124838	197128928	4091	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	28
4162	ENST00000435636.5_1	ENST00000400324.9_5	chr13	60586884	60618491	DIAPH3-AS1	+	lncRNA	chr13	60239716	60738062	DIAPH3	-	protein_coding	31624	opposite	6800_ID	chr13	60586885	60618491	31607	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	28
4172	ENST00000435932.1_3	ENST00000621115.4_1	chr7	73473905	73476614	ELN-AS1	-	lncRNA	chr7	73442118	73484229	ELN	+	protein_coding	2709	opposite	6895_ID	chr7	73473906	73476614	2709	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	28
4406	ENST00000442411.1_3	ENST00000275493.7_2	chr7	55247442	55256627	EGFR-AS1	-	lncRNA	chr7	55086709	55279321	EGFR	+	protein_coding	9185	opposite	6878_ID	chr7	55247443	55256627	9185	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	28
4541	ENST00000446442.1_3	ENST00000375630.6_1	chr13	113399762	113409007	ATP11A-AS1	-	lncRNA	chr13	113344642	113541482	ATP11A	+	protein_coding	9245	opposite	6365_ID	chr13	113399763	113409007	9245	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
4713	ENST00000451496.1_3	ENST00000403625.6_3	chr5	66297210	66299781	MAST4-AS1	-	lncRNA	chr5	65892188	66465423	MAST4	+	protein_coding	2571	opposite	7923_ID	chr5	66297211	66299781	2571	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	28
4822	ENST00000454205.1_3	ENST00000664852.1_1	chr20	33029396	33029830	ITCH-AS1	-	lncRNA	chr20	32951111	33128552	ITCH	+	nonsense_mediated_decay	434	opposite	7372_ID	chr20	33029397	33029830	434	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	28
4825	ENST00000454271.1_3	ENST00000498289.5_1	chr1	169732069	169733789	AL021940.1	-	lncRNA	chr1	169631244	169822226	C1orf112	+	processed_transcript	1720	opposite	4464_ID	chr1	169732070	169733789	1720	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	28
4960	ENST00000457852.3_3	ENST00000258341.5_2	chr1	183107536	183110417	LAMC1-AS1	-	lncRNA	chr1	182992554	183114727	LAMC1	+	protein_coding	2881	opposite	7505_ID	chr1	183107537	183110417	2881	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	27	28
5008	ENST00000458838.1	ENST00000360802.5_3	chr9	33934293	33934374	SNORD121B	-	snoRNA	chr9	33921690	34048947	UBAP2	-	protein_coding	81	same	12363_ID	chr9	33934294	33934374	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	28
5095	ENST00000459386.1	ENST00000360802.5_3	chr9	33952766	33952848	SNORD121A	-	snoRNA	chr9	33921690	34048947	UBAP2	-	protein_coding	82	same	12362_ID	chr9	33952767	33952848	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	28
5162	ENST00000461450.2	ENST00000340126.9_2	chr2	231371815	231372099	RN7SL834P	+	misc_RNA	chr2	231280915	231410321	SP100	+	protein_coding	284	same	10466_ID	chr2	231371816	231372099	284	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	28
5435	ENST00000478944.2	ENST00000306065.9_4	chr19	33145919	33146214	RN7SL789P	-	misc_RNA	chr19	33087911	33166086	ANKRD27	-	protein_coding	295	same	10432_ID	chr19	33145920	33146214	295	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
5458	ENST00000480826.1_1	ENST00000232603.10_5	chr3	108820302	108829189	MORC1-AS1	+	lncRNA	chr3	108677094	108836981	MORC1	-	protein_coding	8887	opposite	9153_ID	chr3	108820303	108829189	8887	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	28
5632	ENST00000492969.2	ENST00000390654.8_6	chr5	177804924	177805219	RN7SL646P	+	misc_RNA	chr5	177664618	178017394	COL23A1	-	protein_coding	295	opposite	10332_ID	chr5	177804925	177805219	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
5670	ENST00000496127.2	ENST00000389048.8_6	chr2	29903894	29904189	RN7SL516P	-	misc_RNA	chr2	29415639	30144452	ALK	-	protein_coding	295	same	10243_ID	chr2	29903895	29904189	295	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	28
5754	ENST00000501834.1_4	ENST00000390654.8_6	chr5	177865681	177870095	AC008659.1	-	lncRNA	chr5	177664618	178017394	COL23A1	-	protein_coding	4414	same	766_ID	chr5	177865682	177870095	4414	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
5757	ENST00000502205.2_1	ENST00000647433.1_4	chr5	140937877	140944830	DIAPH1-AS1	+	lncRNA	chr5	140894587	140998622	DIAPH1	-	protein_coding	6953	opposite	6799_ID	chr5	140937878	140944830	6953	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	28
6109	ENST00000513255.1_3	ENST00000511685.6_3	chr4	183693717	183695084	AC079226.1	-	lncRNA	chr4	183164554	183724177	TENM3	+	protein_coding	1367	opposite	2631_ID	chr4	183693718	183695084	1367	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	23	28
6139	ENST00000514241.1_1	ENST00000403625.6_3	chr5	65958158	65958816	MAST4-IT1	+	lncRNA	chr5	65892188	66465423	MAST4	+	protein_coding	658	same	7924_ID	chr5	65958159	65958816	658	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
6347	ENST00000516321.1	ENST00000339514.8_3	chr2	192235663	192235770	RNU6-1045P	+	snRNA	chr2	192110001	192290115	MYO1B	+	protein_coding	107	same	10790_ID	chr2	192235664	192235770	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	28
6403	ENST00000516488.1	ENST00000521903.5_3	chr8	124354653	124354759	RNU6-875P	+	snRNA	chr8	124332741	124428590	ATAD2	-	protein_coding	106	opposite	11575_ID	chr8	124354654	124354759	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	28
6443	ENST00000516597.1	ENST00000360802.5_3	chr9	34018257	34018319	RNU7-36P	-	snRNA	chr9	33921690	34048947	UBAP2	-	protein_coding	62	same	11775_ID	chr9	34018258	34018319	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
6457	ENST00000516643.1	ENST00000373563.9_6	chr2	233647374	233647476	RNU6-107P	+	snRNA	chr2	233562040	233725315	GIGYF2	+	protein_coding	102	same	10815_ID	chr2	233647375	233647476	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	28
6639	ENST00000517151.1	ENST00000380548.9_2	chr9	18651144	18651448	RN7SKP258	+	misc_RNA	chr9	18474150	18910948	ADAMTSL1	+	protein_coding	304	same	9859_ID	chr9	18651145	18651448	304	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	28
6709	ENST00000517346.1_1	ENST00000518659.5_1	chr5	167148367	167156129	AC008708.1	+	lncRNA	chr5	166711803	167690001	TENM2	+	protein_coding	7762	same	781_ID	chr5	167148368	167156129	7762	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
6770	ENST00000518837.1_3	ENST00000518659.5_1	chr5	167392191	167394091	AC008705.2	-	lncRNA	chr5	166711803	167690001	TENM2	+	protein_coding	1900	opposite	780_ID	chr5	167392192	167394091	1900	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	28
6799	ENST00000519892.1_3	ENST00000518659.5_1	chr5	166733277	166736875	AC008601.1	-	lncRNA	chr5	166711803	167690001	TENM2	+	protein_coding	3598	opposite	755_ID	chr5	166733278	166736875	3598	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
6853	ENST00000521697.1_3	ENST00000518659.5_1	chr5	166714324	166721278	AC091820.2	-	lncRNA	chr5	166711803	167690001	TENM2	+	protein_coding	6954	opposite	3015_ID	chr5	166714325	166721278	6954	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
6857	ENST00000521803.1_1	ENST00000390654.8_6	chr5	177777867	177779251	AC136601.1	+	lncRNA	chr5	177664618	178017394	COL23A1	-	protein_coding	1384	opposite	4161_ID	chr5	177777868	177779251	1384	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
6891	ENST00000522956.1_3	ENST00000518659.5_1	chr5	167080232	167087486	AC008708.2	-	lncRNA	chr5	166711803	167690001	TENM2	+	protein_coding	7254	opposite	782_ID	chr5	167080233	167087486	7254	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
6908	ENST00000523497.1_3	ENST00000518659.5_1	chr5	166723238	166730377	AC091820.1	-	lncRNA	chr5	166711803	167690001	TENM2	+	protein_coding	7139	opposite	3014_ID	chr5	166723239	166730377	7139	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
6948	ENST00000524858.2_5	ENST00000672621.1_1	chr11	26307124	26352836	ANO3-AS1	-	lncRNA	chr11	26210388	26684835	ANO3	+	protein_coding	45712	opposite	5958_ID	chr11	26307125	26352836	45712	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	28
6965	ENST00000526017.1_3	ENST00000253925.12_3	chr11	70170976	70173315	AP002336.3	-	lncRNA	chr11	70116795	70230502	PPFIA1	+	protein_coding	2339	opposite	6182_ID	chr11	70170977	70173315	2339	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	28
7047	ENST00000528607.1_3	ENST00000253925.12_3	chr11	70128472	70209474	AP002336.2	-	lncRNA	chr11	70116795	70230502	PPFIA1	+	protein_coding	81002	opposite	6180_ID	chr11	70128473	70209474	81002	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	28
7071	ENST00000529533.6_7	ENST00000672621.1_1	chr11	26580578	26593810	MUC15	-	protein_coding	chr11	26210388	26684835	ANO3	+	protein_coding	13232	opposite	9186_ID	chr11	26580579	26593810	13232	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	28
7725	ENST00000557989.1_1	ENST00000356107.11_5	chr15	30114833	30116284	AC022613.2	+	lncRNA	chr15	29992438	30261118	TJP1	-	protein_coding	1451	opposite	1894_ID	chr15	30114834	30116284	1451	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
7855	ENST00000560740.1_1	ENST00000356107.11_5	chr15	30020389	30021735	AC022613.3	-	lncRNA	chr15	29992438	30261118	TJP1	-	protein_coding	1346	same	1895_ID	chr15	30020390	30021735	1346	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	28
8053	ENST00000564893.1_3	ENST00000261588.9_5	chr16	27690260	27730104	AC016597.1	-	lncRNA	chr16	27561464	27791690	KATNIP	+	protein_coding	56907	opposite	1542_ID	chr16	27690261	27730104	39844	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	28
8487	ENST00000577441.1	ENST00000389048.8_6	chr2	29726772	29726859	AC106899.1	-	miRNA	chr2	29415639	30144452	ALK	-	protein_coding	87	same	3675_ID	chr2	29726773	29726859	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	28
8553	ENST00000577763.1	ENST00000442544.7_3	chr18	50763470	50763560	hsa-mir-4528	+	miRNA	chr18	49866566	51062269	DCC	+	protein_coding	90	same	7300_ID	chr18	50763471	50763560	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	28
8703	ENST00000578669.1	ENST00000461783.7_6	chr6	155174493	155174570	MIR1273C	+	miRNA	chr6	155153830	155578857	TIAM2	+	protein_coding	77	same	8031_ID	chr6	155174494	155174570	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
8726	ENST00000578793.1	ENST00000487727.2	chr9	133275652	133275950	RN7SL665P	+	misc_RNA	chr9	133259835	133294969	HMCN2	+	processed_transcript	298	same	10351_ID	chr9	133275653	133275950	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	28
8766	ENST00000579046.1	ENST00000262919.10_2	chr20	3487653	3487759	AL109805.1	+	miRNA	chr20	3451664	3631765	ATRN	+	protein_coding	106	same	4705_ID	chr20	3487654	3487759	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
8813	ENST00000579347.1_1	ENST00000319481.8_4	chr18	21944750	21947948	AC023983.1	+	lncRNA	chr18	21742015	21977788	OSBPL1A	-	protein_coding	3198	opposite	1990_ID	chr18	21944751	21947948	3198	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	28
8893	ENST00000579801.1	ENST00000380548.9_2	chr9	18573303	18573377	MIR3152	+	miRNA	chr9	18474150	18910948	ADAMTSL1	+	protein_coding	74	same	8273_ID	chr9	18573304	18573377	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	28
9079	ENST00000580810.1	ENST00000526495.6_5	chr14	95604255	95604323	MIR3173	-	miRNA	chr14	95552580	95624347	DICER1	-	protein_coding	68	same	8291_ID	chr14	95604256	95604323	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	28
9149	ENST00000581156.1	ENST00000613525.4_3	chr19	8611742	8611812	AC092316.2	+	miRNA	chr19	8585680	8642461	MYO1F	-	protein_coding	70	opposite	3076_ID	chr19	8611743	8611812	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	28
9342	ENST00000582269.1_1	ENST00000283351.10_5	chr18	29424350	29425141	AC022960.1	+	lncRNA	chr18	29409159	29523091	TRAPPC8	-	protein_coding	791	opposite	1921_ID	chr18	29424351	29425141	791	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	28
9394	ENST00000582601.1	ENST00000375630.6_1	chr13	113372158	113372228	AL162711.1	-	miRNA	chr13	113344642	113541482	ATP11A	+	protein_coding	70	opposite	5214_ID	chr13	113372159	113372228	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
9638	ENST00000583941.1	ENST00000644978.2_4	chr2	197154132	197154429	RN7SL820P	+	misc_RNA	chr2	197058795	197458278	HECW2	-	protein_coding	297	opposite	10460_ID	chr2	197154133	197154429	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	28
9906	ENST00000585593.1_3	ENST00000398665.8_2	chr19	2212027	2215564	AC004490.1	-	lncRNA	chr19	2163931	2232577	DOT1L	+	protein_coding	3537	opposite	134_ID	chr19	2212028	2215564	3537	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	28
9933	ENST00000586389.1_1	ENST00000307671.12_3	chr18	76877206	76877920	AC125437.1	+	lncRNA	chr18	76829396	77138287	ATP9B	+	protein_coding	714	same	4016_ID	chr18	76877207	76877920	714	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	28
10004	ENST00000588561.1_1	ENST00000644646.2_4	chr18	59913042	59914645	AC027514.1	+	lncRNA	chr18	59854487	59977482	RELCH	+	protein_coding	1603	same	2212_ID	chr18	59913043	59914645	1603	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	28
10020	ENST00000589127.1_1	ENST00000306065.9_4	chr19	33157203	33164116	AC008474.1	+	lncRNA	chr19	33087911	33166086	ANKRD27	-	protein_coding	6913	opposite	736_ID	chr19	33157204	33164116	6913	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	28
10051	ENST00000590304.1_3	ENST00000410018.5_3	chr19	38852434	38853124	AC005625.1	-	lncRNA	chr19	38826414	38861583	CATSPERG	+	protein_coding	690	opposite	324_ID	chr19	38852435	38853124	690	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	28
10070	ENST00000591014.1_3	ENST00000644646.2_4	chr18	59967268	59968231	AC027514.2	-	lncRNA	chr18	59854487	59977482	RELCH	+	protein_coding	963	opposite	2213_ID	chr18	59967269	59968231	963	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	28	28
10096	ENST00000591742.1_3	ENST00000307671.12_3	chr18	77013576	77014856	AC104423.1	-	lncRNA	chr18	76829396	77138287	ATP9B	+	protein_coding	1280	opposite	3532_ID	chr18	77013577	77014856	1280	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	28
10635	ENST00000605549.1_3	ENST00000263461.11_2	chr10	122638767	122640179	AC010998.2	-	lncRNA	chr10	122610873	122669036	WDR11	+	protein_coding	1412	opposite	1171_ID	chr10	122638768	122640179	1412	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	28
10732	ENST00000606664.1_1	ENST00000521053.5_3	chr8	142444644	142448054	AC100803.4	+	lncRNA	chr8	142443928	142517330	MROH5	-	nonsense_mediated_decay	3410	opposite	3421_ID	chr8	142444645	142448054	3410	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	23	28
10785	ENST00000607259.1_1	ENST00000435213.6_3	chr9	130129048	130129676	AL445222.1	+	lncRNA	chr9	130025940	130155826	GARNL3	+	protein_coding	628	same	5617_ID	chr9	130129049	130129676	628	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	28
10944	ENST00000608771.1_1	ENST00000344922.10_5	chr1	222832208	222834854	AL592148.3	-	lncRNA	chr1	222791438	222841349	MIA3	+	protein_coding	2646	opposite	5804_ID	chr1	222832209	222834854	2646	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	28
10986	ENST00000609271.1_5	ENST00000498289.5_1	chr1	169702717	169733846	SELE	-	protein_coding	chr1	169631244	169822226	C1orf112	+	processed_transcript	42066	opposite	12029_ID	chr1	169702718	169733846	31129	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	28
11317	ENST00000615831.1_1	ENST00000356231.4_6	chr15	43016299	43017120	AC090510.3	+	lncRNA	chr15	43015741	43029326	CDAN1	-	protein_coding	821	opposite	2899_ID	chr15	43016300	43017120	821	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	28	28
11318	ENST00000615844.1_1	ENST00000375630.6_1	chr13	113465879	113466472	AL356752.1	+	lncRNA	chr13	113344642	113541482	ATP11A	+	protein_coding	593	same	5399_ID	chr13	113465880	113466472	593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	28
11342	ENST00000616300.1_1	ENST00000283351.10_5	chr18	29475707	29476373	AC022960.2	-	lncRNA	chr18	29409159	29523091	TRAPPC8	-	protein_coding	666	same	1922_ID	chr18	29475708	29476373	666	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	28
11431	ENST00000618799.1_1	ENST00000664852.1_1	chr20	33064009	33064592	AL109923.1	+	lncRNA	chr20	32951111	33128552	ITCH	+	nonsense_mediated_decay	583	same	4712_ID	chr20	33064010	33064592	583	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	28
11448	ENST00000619176.1_1	ENST00000353196.5_3	chr17	40023833	40023989	AC125257.2	+	lncRNA	chr17	40023183	40075272	ACLY	-	protein_coding	156	opposite	4015_ID	chr17	40023834	40023989	156	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	28	28
11619	ENST00000622440.1_1	ENST00000550785.5_1	chr12	113687270	113687847	AC089999.2	+	lncRNA	chr12	113659264	113736390	TPCN1	+	protein_coding	577	same	2862_ID	chr12	113687271	113687847	577	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	28
12203	ENST00000650983.1_3	ENST00000498289.5_1	chr1	169659805	169680843	SELL	-	protein_coding	chr1	169631244	169822226	C1orf112	+	processed_transcript	21038	opposite	12031_ID	chr1	169659806	169680843	21038	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	28
12255	ENST00000652152.1_3	ENST00000307671.12_3	chr18	76945800	76951559	AC125437.3	-	lncRNA	chr18	76829396	77138287	ATP9B	+	protein_coding	5759	opposite	4017_ID	chr18	76945801	76951559	5759	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	28
12306	ENST00000653041.1_1	ENST00000286827.7_3	chr21	32720050	32731472	AP000248.1	+	lncRNA	chr21	32490733	32931290	TIAM1	-	protein_coding	11422	opposite	5966_ID	chr21	32720051	32731472	11422	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	28
12953	ENST00000666846.1_3	ENST00000284509.11_4	chr15	50169495	50175720	AC025040.1	+	lncRNA	chr15	50150434	50411430	ATP8B4	-	protein_coding	6227	opposite	2048_ID	chr15	50169496	50175720	6225	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	24	28
35510	ENST00000304735.4_2	ENST00000571227.5_3	chr16	4421848	4433539	VASN	+	protein_coding	chr16	4404544	4466628	CORO7	-	nonsense_mediated_decay	11691	opposite	12888_ID	chr16	4421849	4433539	11691	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	28
30951	ENST00000410466.1	ENST00000450892.7_5	chr15	43894740	43894846	RNU6-554P	+	snRNA	chr15	43891760	43910998	STRC	-	protein_coding	106	opposite	11334_ID	chr15	43894741	43894846	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	28
39731	ENST00000430259.1_3	ENST00000397708.1_4	chr21	47671725	47674047	AP001469.3	-	lncRNA	chr21	47655046	47706211	MCM3AP	-	protein_coding	2585	same	6139_ID	chr21	47671726	47674047	2322	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	28
44851	ENST00000444966.1_1	ENST00000397708.1_4	chr21	47666803	47667596	AP001469.2	+	lncRNA	chr21	47655046	47706211	MCM3AP	-	protein_coding	793	opposite	6137_ID	chr21	47666804	47667596	793	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	28
65581	ENST00000516934.1	ENST00000493662.6_1	chr6	31724727	31724830	RNU6-850P	-	snRNA	chr6	31707796	31732627	MSH5-SAPCD1	+	nonsense_mediated_decay	103	opposite	11554_ID	chr6	31724728	31724830	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	28
368	ENST00000307144.6_2	ENST00000288235.9_4	chr15	59499041	59500787	LDHAL6B	+	protein_coding	chr15	59424632	59665070	MYO1E	-	protein_coding	1746	opposite	7518_ID	chr15	59499042	59500787	1746	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	27
434	ENST00000316148.4_1	ENST00000558480.7_3	chr15	79271230	79278268	AC011944.1	+	lncRNA	chr15	79252247	79383122	RASGRF1	-	protein_coding	7038	opposite	1315_ID	chr15	79271231	79278268	7038	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	23	27
499	ENST00000324630.5_3	ENST00000253925.12_3	chr11	70204303	70204783	AP000487.2	-	lncRNA	chr11	70116795	70230502	PPFIA1	+	protein_coding	480	opposite	5996_ID	chr11	70204304	70204783	480	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	27
858	ENST00000362642.1	ENST00000288235.9_4	chr15	59633512	59633616	RNU6-212P	-	snRNA	chr15	59424632	59665070	MYO1E	-	protein_coding	104	same	11077_ID	chr15	59633513	59633616	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	27
947	ENST00000363200.1	ENST00000288235.9_4	chr15	59504846	59504987	RNU4-80P	-	snRNA	chr15	59424632	59665070	MYO1E	-	protein_coding	141	same	10707_ID	chr15	59504847	59504987	141	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	27
1004	ENST00000363486.1	ENST00000310715.7_6	chr10	75038819	75038926	RNU6-833P	+	snRNA	chr10	75013516	75118617	CFAP70	-	protein_coding	107	opposite	11540_ID	chr10	75038820	75038926	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	27
1044	ENST00000363684.1	ENST00000297933.11_4	chr9	128066198	128066305	RNU6-1020P	-	snRNA	chr9	128024104	128129486	GAPVD1	+	protein_coding	107	opposite	10771_ID	chr9	128066199	128066305	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	27
1337	ENST00000365249.1	ENST00000611279.4_2	chr6	151260357	151260464	RNU6-302P	+	snRNA	chr6	151186814	151423021	MTHFD1L	+	protein_coding	107	same	11143_ID	chr6	151260358	151260464	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	27
1342	ENST00000365289.1	ENST00000648908.2_5	chr18	55422625	55422732	RNU6-742P	+	snRNA	chr18	55313657	55470547	ATP8B1	-	protein_coding	107	opposite	11469_ID	chr18	55422626	55422732	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	27
1527	ENST00000375341.8_4	ENST00000494072.3	chr1	19197923	19229049	ALDH4A1	-	protein_coding	chr1	19175766	19247615	RP13-279N23.2	-	nonsense_mediated_decay	31295	same	5926_ID	chr1	19197924	19229049	31126	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	9	27
1618	ENST00000380907.2_2	ENST00000230449.9_4	chr6	655938	656963	HUS1B	-	protein_coding	chr6	485153	693139	EXOC2	-	protein_coding	1025	same	7318_ID	chr6	655939	656963	1025	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	27
1644	ENST00000383856.1	ENST00000376104.6_6	chr11	85220981	85221088	RNU6-1292P	+	snRNA	chr11	83168961	85338314	DLG2	-	protein_coding	107	opposite	10987_ID	chr11	85220982	85221088	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	27
1722	ENST00000384039.1	ENST00000319481.8_4	chr18	21798263	21798368	RNU6-435P	+	snRNA	chr18	21742015	21977788	OSBPL1A	-	protein_coding	105	opposite	11238_ID	chr18	21798264	21798368	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	27
1838	ENST00000384405.1	ENST00000677213.1_1	chr1	155328502	155328609	RNU6-106P	-	snRNA	chr1	155305077	155532953	ASH1L	-	protein_coding	107	same	10811_ID	chr1	155328503	155328609	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	27
1841	ENST00000384415.1	ENST00000677213.1_1	chr1	155389187	155389291	RNU6-1297P	+	snRNA	chr1	155305077	155532953	ASH1L	-	protein_coding	104	opposite	10989_ID	chr1	155389188	155389291	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	27
2339	ENST00000390762.1	ENST00000319481.8_4	chr18	21901649	21901699	MIR320C2	+	miRNA	chr18	21742015	21977788	OSBPL1A	-	protein_coding	50	opposite	8315_ID	chr18	21901650	21901699	50	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	27
2535	ENST00000398957.1_3	ENST00000254480.10_4	chr3	47643204	47646167	AC112512.1	-	lncRNA	chr3	47626758	47823383	SMARCC1	-	protein_coding	2963	same	3829_ID	chr3	47643205	47646167	2963	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	27
2602	ENST00000401295.2	ENST00000414978.5_4	chrX	138681374	138681462	AL033403.1	-	miRNA	chrX	138663929	138790375	MCF2	-	protein_coding	88	same	4577_ID	chrX	138681375	138681462	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	27
2678	ENST00000408169.1	ENST00000288235.9_4	chr15	59443176	59443267	AC092757.1	-	miRNA	chr15	59424632	59665070	MYO1E	-	protein_coding	91	same	3144_ID	chr15	59443177	59443267	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	27
2767	ENST00000408406.1	ENST00000253925.12_3	chr11	70130060	70130176	MIR548K	+	miRNA	chr11	70116795	70230502	PPFIA1	+	protein_coding	116	same	8907_ID	chr11	70130061	70130176	116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	27
2809	ENST00000408512.1	ENST00000315939.11_3	chr12	890298	890424	RNU4ATAC16P	+	snRNA	chr12	861744	1020618	WNK1	+	protein_coding	126	same	10725_ID	chr12	890299	890424	126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	27
2824	ENST00000408542.1	ENST00000611279.4_2	chr6	151361051	151361107	AL133260.1	-	miRNA	chr6	151186814	151423021	MTHFD1L	+	protein_coding	56	opposite	4831_ID	chr6	151361052	151361107	56	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	27
3159	ENST00000410787.1	ENST00000655275.1_3	chr3	38841786	38841885	AC116038.2	-	miRNA	chr3	38738292	38857777	SCN10A	-	protein_coding	99	same	3894_ID	chr3	38841787	38841885	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	27
3161	ENST00000410794.1	ENST00000319980.10_1	chr13	21186299	21186477	RNU2-7P	+	snRNA	chr13	21141276	21265576	IFT88	+	protein_coding	178	same	10658_ID	chr13	21186300	21186477	178	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	27
3383	ENST00000414132.5_4	ENST00000651989.2_2	chr1	70479664	70496905	LRRC7-AS1	-	lncRNA	chr1	70033604	70610047	LRRC7	+	protein_coding	17241	opposite	7865_ID	chr1	70479665	70496905	17241	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	27
3887	ENST00000428191.1_3	ENST00000282272.15_5	chr2	198115581	198167243	ANKRD44-IT1	-	lncRNA	chr2	197851385	198175504	ANKRD44	-	protein_coding	51662	same	5953_ID	chr2	198115582	198167243	51662	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	27
3906	ENST00000428656.2_4	ENST00000400324.9_5	chr13	60718781	60727812	DIAPH3-AS2	+	lncRNA	chr13	60239716	60738062	DIAPH3	-	protein_coding	9031	opposite	6801_ID	chr13	60718782	60727812	9031	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	27
3994	ENST00000430794.1_3	ENST00000394780.8_3	chrX	110949876	110954329	ALG13-AS1	-	lncRNA	chrX	110924397	111003877	ALG13	+	protein_coding	4453	opposite	5929_ID	chrX	110949877	110954329	4453	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	27
3996	ENST00000430842.1_1	ENST00000230449.9_4	chr6	524170	525581	AL031770.1	+	lncRNA	chr6	485153	693139	EXOC2	-	protein_coding	1411	opposite	4560_ID	chr6	524171	525581	1411	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	27
4040	ENST00000432229.1_3	ENST00000319562.11_4	chr13	99087658	99088094	FARP1-AS1	-	lncRNA	chr13	98795347	99107430	FARP1	+	protein_coding	436	opposite	7002_ID	chr13	99087659	99088094	436	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	27
4510	ENST00000445833.1_3	ENST00000611279.4_2	chr6	151376032	151377193	AL133260.2	-	lncRNA	chr6	151186814	151423021	MTHFD1L	+	protein_coding	1161	opposite	4832_ID	chr6	151376033	151377193	1161	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	26	27
4642	ENST00000449346.1_1	ENST00000282272.15_5	chr2	198062714	198063997	ANKRD44-AS1	+	lncRNA	chr2	197851385	198175504	ANKRD44	-	protein_coding	1283	opposite	5952_ID	chr2	198062715	198063997	1283	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	27
4700	ENST00000451126.1_1	ENST00000378168.8_8	chrX	41379288	41381589	CASK-AS1	+	lncRNA	chrX	41374186	41782770	CASK	-	protein_coding	2301	opposite	6555_ID	chrX	41379289	41381589	2301	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	27	27
4828	ENST00000454380.1_3	ENST00000638452.2_2	chr5	131755107	131762406	LINC02863	-	lncRNA	chr5	131746523	131981771	AC116366.2	+	protein_coding	7299	opposite	7811_ID	chr5	131755108	131762406	7299	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	27
4894	ENST00000456270.1_3	ENST00000003084.11_2	chr7	117244844	117287469	AC000061.1	-	lncRNA	chr7	117120078	117308719	CFTR	+	protein_coding	42625	opposite	17_ID	chr7	117244845	117287469	42625	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	27
4973	ENST00000458371.1_3	ENST00000677213.1_1	chr1	155365800	155366769	ASH1L-IT1	-	lncRNA	chr1	155305077	155532953	ASH1L	-	protein_coding	969	same	6356_ID	chr1	155365801	155366769	969	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	27
4986	ENST00000458743.1	ENST00000264741.10_2	chr3	37614641	37614704	RNU7-73P	-	snRNA	chr3	37493631	37864998	ITGA9	+	protein_coding	63	opposite	11804_ID	chr3	37614642	37614704	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	27
5127	ENST00000459540.1	ENST00000368489.6_4	chr1	154311218	154311278	RNU7-57P	+	snRNA	chr1	154298000	154323780	ATP8B2	+	protein_coding	60	same	11792_ID	chr1	154311219	154311278	60	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	27
5148	ENST00000460400.1_3	ENST00000245957.10_5	chr20	20239050	20248453	CFAP61-AS1	-	lncRNA	chr20	20033175	20341342	CFAP61	+	protein_coding	9403	opposite	6630_ID	chr20	20239051	20248453	9403	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	21	27
5622	ENST00000492442.2	ENST00000400324.9_5	chr13	60608600	60608896	RN7SL375P	-	misc_RNA	chr13	60239716	60738062	DIAPH3	-	protein_coding	296	same	10139_ID	chr13	60608601	60608896	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	27
5966	ENST00000508993.1_3	ENST00000265080.9_2	chr5	80409203	80410671	AC026427.1	-	lncRNA	chr5	80256181	80525981	RASGRF2	+	protein_coding	1468	opposite	2148_ID	chr5	80409204	80410671	1468	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	27
5974	ENST00000509283.1_3	ENST00000511685.6_3	chr4	183619054	183629195	AC079226.2	-	lncRNA	chr4	183164554	183724177	TENM3	+	protein_coding	10141	opposite	2632_ID	chr4	183619055	183629195	10141	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	27
6203	ENST00000515905.1	ENST00000511685.6_3	chr4	183552606	183552841	RN7SKP67	-	misc_RNA	chr4	183164554	183724177	TENM3	+	protein_coding	235	opposite	9911_ID	chr4	183552607	183552841	235	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	27
6306	ENST00000516208.1	ENST00000256509.7_4	chr3	324371	324475	RNU6-1194P	-	snRNA	chr3	238445	451100	CHL1	+	protein_coding	104	opposite	10897_ID	chr3	324372	324475	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	27
6419	ENST00000516534.1	ENST00000511685.6_3	chr4	183469811	183469932	RNU2-34P	+	snRNA	chr4	183164554	183724177	TENM3	+	protein_coding	121	same	10631_ID	chr4	183469812	183469932	121	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	27
6669	ENST00000517221.1	ENST00000288235.9_4	chr15	59463381	59463461	MIR2116	-	miRNA	chr15	59424632	59665070	MYO1E	-	protein_coding	80	same	8178_ID	chr15	59463382	59463461	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	27
7131	ENST00000531426.1_1	ENST00000253925.12_3	chr11	70166033	70167521	AP002336.1	+	lncRNA	chr11	70116795	70230502	PPFIA1	+	protein_coding	1488	same	6179_ID	chr11	70166034	70167521	1488	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	27
7155	ENST00000532123.1_1	ENST00000376104.6_6	chr11	84647732	84666749	AP000857.2	+	lncRNA	chr11	83168961	85338314	DLG2	-	protein_coding	19017	opposite	6038_ID	chr11	84647733	84666749	19017	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	27
7192	ENST00000533669.5_1	ENST00000376104.6_6	chr11	83356772	83436433	DLG2-AS2	+	lncRNA	chr11	83168961	85338314	DLG2	-	protein_coding	81789	opposite	6811_ID	chr11	83356773	83436433	79661	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	27
7210	ENST00000534275.1_1	ENST00000376104.6_6	chr11	84431868	84511744	AP001825.1	+	lncRNA	chr11	83168961	85338314	DLG2	-	protein_coding	79876	opposite	6163_ID	chr11	84431869	84511744	79876	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	27
7496	ENST00000549756.1_1	ENST00000396368.8_5	chr16	15702330	15704420	AC026401.1	+	lncRNA	chr16	15688243	15737011	MARF1	-	protein_coding	2090	opposite	2144_ID	chr16	15702331	15704420	2090	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	27
7679	ENST00000556640.1_3	ENST00000545908.6_3	chr14	64889652	64915275	AL122035.1	-	lncRNA	chr14	64854748	64930175	MTHFD1	+	protein_coding	25623	opposite	4801_ID	chr14	64889653	64915275	25623	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	27
7746	ENST00000558304.1_1	ENST00000380950.7_5	chr15	49075386	49076318	AC012379.1	+	lncRNA	chr15	49030134	49103266	CEP152	-	protein_coding	932	opposite	1372_ID	chr15	49075387	49076318	932	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	27
7767	ENST00000558749.1_3	ENST00000288235.9_4	chr15	59640846	59652088	AC092868.2	-	lncRNA	chr15	59424632	59665070	MYO1E	-	protein_coding	11242	same	3163_ID	chr15	59640847	59652088	11242	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	27
7813	ENST00000559841.1_1	ENST00000346991.9_2	chr15	40935130	40939055	AC022405.1	+	lncRNA	chr15	40886217	40956540	KNL1	+	protein_coding	3925	same	1858_ID	chr15	40935131	40939055	3925	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	27
7830	ENST00000560248.1_3	ENST00000288235.9_4	chr15	59558918	59563361	AC092756.1	-	lncRNA	chr15	59424632	59665070	MYO1E	-	protein_coding	54517	same	3143_ID	chr15	59558919	59563361	4443	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	27
8080	ENST00000565518.1_1	ENST00000354534.6	chr12	52203488	52204384	AC068987.1	-	lncRNA	chr12	51985019	52206648	SCN8A	+	protein_coding	896	opposite	2461_ID	chr12	52203489	52204384	896	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	27	27
8281	ENST00000569881.1_1	ENST00000261588.9_5	chr16	27654519	27655984	AC002551.1	+	lncRNA	chr16	27561464	27791690	KATNIP	+	protein_coding	1465	same	68_ID	chr16	27654520	27655984	1465	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	27
8341	ENST00000572590.1_3	ENST00000675386.2_2	chr17	79428038	79428963	AC110285.4	-	lncRNA	chr17	79369256	79433357	BAHCC1	+	protein_coding	925	opposite	3784_ID	chr17	79428039	79428963	925	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	25	27
8474	ENST00000577385.1_3	ENST00000306378.11_3	chr17	65947000	65947862	AC134407.1	-	lncRNA	chr17	65821618	65980494	BPTF	+	protein_coding	862	opposite	4128_ID	chr17	65947001	65947862	862	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	27
8511	ENST00000577585.1	ENST00000254480.10_4	chr3	47810600	47810701	AC026318.1	+	miRNA	chr3	47626758	47823383	SMARCC1	-	protein_coding	101	opposite	2129_ID	chr3	47810601	47810701	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	27
8713	ENST00000578725.1	ENST00000425128.6_3	chr3	27460828	27461125	RN7SL859P	-	misc_RNA	chr3	27414211	27525911	SLC4A7	-	protein_coding	297	same	10486_ID	chr3	27460829	27461125	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	27
8896	ENST00000579808.1	ENST00000306378.11_3	chr17	65840060	65840130	AC006534.2	+	miRNA	chr17	65821618	65980494	BPTF	+	protein_coding	70	same	475_ID	chr17	65840061	65840130	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	27
9070	ENST00000580757.1	ENST00000319481.8_4	chr18	21852888	21853170	RN7SL247P	-	misc_RNA	chr18	21742015	21977788	OSBPL1A	-	protein_coding	282	same	10054_ID	chr18	21852889	21853170	282	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	27
9131	ENST00000581063.1	ENST00000398542.5_3	chr1	32224260	32224336	MIR4254	-	miRNA	chr1	32192717	32229941	ADGRB2	-	protein_coding	76	same	8456_ID	chr1	32224261	32224336	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	27
9262	ENST00000581857.1	ENST00000376104.6_6	chr11	83940602	83940692	AP003305.1	+	miRNA	chr11	83168961	85338314	DLG2	-	protein_coding	90	opposite	6246_ID	chr11	83940603	83940692	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	27
9384	ENST00000582502.1	ENST00000426333.7_4	chr17	42961353	42961639	RN7SL405P	+	misc_RNA	chr17	42927315	42976813	EFTUD2	-	protein_coding	286	opposite	10160_ID	chr17	42961354	42961639	286	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	27
9658	ENST00000584058.1	ENST00000399451.6_3	chr3	15780021	15780315	RN7SL4P	+	misc_RNA	chr3	15708742	15901278	ANKRD28	-	protein_coding	294	opposite	10232_ID	chr3	15780022	15780315	294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	27
9802	ENST00000584864.1	ENST00000273666.10_2	chr3	120768486	120768562	MIR5682	+	miRNA	chr3	120626918	121143608	STXBP5L	+	protein_coding	76	same	8954_ID	chr3	120768487	120768562	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	27
9888	ENST00000585292.1	ENST00000306378.11_3	chr17	65973813	65974084	RN7SL622P	+	misc_RNA	chr17	65821618	65980494	BPTF	+	protein_coding	271	same	10315_ID	chr17	65973814	65974084	271	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	27
9918	ENST00000585899.1_1	ENST00000225983.10_4	chr17	42193279	42197963	AC023855.1	+	lncRNA	chr17	42154113	42201006	HDAC5	-	protein_coding	4684	opposite	1980_ID	chr17	42193280	42197963	4684	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	27
9974	ENST00000587534.1_3	ENST00000331495.8_2	chr17	43315394	43319101	AC008105.1	-	lncRNA	chr17	43299251	43324685	FMNL1	+	protein_coding	3707	opposite	699_ID	chr17	43315395	43319101	3707	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	27
10213	ENST00000595988.1	ENST00000331397.8_8	chrY	15418466	15429181	AC010877.1	+	protein_coding	chrY	15360258	15592553	UTY	-	protein_coding	10715	opposite	1153_ID	chrY	15418467	15429181	10715	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	27
10305	ENST00000598280.5_1	ENST00000380989.6_4	chr10	3183823	3210164	PITRM1-AS1	+	lncRNA	chr10	3179921	3215033	PITRM1	-	protein_coding	26341	opposite	9567_ID	chr10	3183824	3210164	26341	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	27
10371	ENST00000600364.2_3	ENST00000262811.10_2	chr19	18255331	18262501	AC007192.2	-	lncRNA	chr19	18208602	18262502	MAST3	+	protein_coding	7170	opposite	519_ID	chr19	18255332	18262501	7170	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	22	27
10415	ENST00000601618.1_1	ENST00000245934.12_4	chr19	46333421	46334366	AC092301.1	+	lncRNA	chr19	46318667	46366405	SYMPK	-	protein_coding	945	opposite	3074_ID	chr19	46333422	46334366	945	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	27
10626	ENST00000605298.1_1	ENST00000553728.1_3	chr14	39734906	39736265	AL132639.2	-	lncRNA	chr14	39703105	39819627	MIA2	+	protein_coding	1359	opposite	4806_ID	chr14	39734907	39736265	1359	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	27
10873	ENST00000607968.1_2	ENST00000311117.8_3	chr7	104743284	104745930	AC005070.3	-	lncRNA	chr7	104654651	104755466	KMT2E	+	protein_coding	2646	opposite	232_ID	chr7	104743285	104745930	2646	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	27
10969	ENST00000609125.1_1	ENST00000545908.6_3	chr14	64907086	64908956	AL122035.2	-	lncRNA	chr14	64854748	64930175	MTHFD1	+	protein_coding	1870	opposite	4802_ID	chr14	64907087	64908956	1870	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	27
11210	ENST00000613256.1_1	ENST00000261588.9_5	chr16	27698502	27698843	AC016597.2	+	lncRNA	chr16	27561464	27791690	KATNIP	+	protein_coding	341	same	1543_ID	chr16	27698503	27698843	341	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	27
11390	ENST00000617465.1_1	ENST00000356231.4_6	chr15	43018780	43019409	AC090510.2	+	lncRNA	chr15	43015741	43029326	CDAN1	-	protein_coding	629	opposite	2898_ID	chr15	43018781	43019409	629	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	27
11660	ENST00000623740.1_1	ENST00000545383.5_2	chr22	50531173	50534866	AL034546.1	+	lncRNA	chr22	50528307	50600047	MOV10L1	+	protein_coding	3693	same	4590_ID	chr22	50531174	50534866	3693	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	27
12085	ENST00000648642.1_3	ENST00000315939.11_3	chr12	974453	976305	AC004765.1	-	lncRNA	chr12	861744	1020618	WNK1	+	protein_coding	1852	opposite	162_ID	chr12	974454	976305	1852	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	27
12131	ENST00000649379.1_1	ENST00000637395.1_3	chr10	49454567	49456555	AC074325.1	+	lncRNA	chr10	49363354	49482732	FRMPD2	-	nonsense_mediated_decay	1988	opposite	2577_ID	chr10	49454568	49456555	1988	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	27
12449	ENST00000656551.1_1	ENST00000543185.6_3	chr2	240036553	240040538	AC017028.1	+	lncRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	3985	opposite	1589_ID	chr2	240036554	240040538	3985	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	27
12913	ENST00000666024.1_3	ENST00000487694.7_3	chr3	77616658	77621032	AC133040.1	-	lncRNA	chr3	75955845	77696661	ROBO2	+	protein_coding	4374	opposite	4107_ID	chr3	77616659	77621032	4374	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	27
13028	ENST00000668627.1_4	ENST00000672621.1_1	chr11	26266186	26290962	AC021698.1	-	lncRNA	chr11	26210388	26684835	ANO3	+	protein_coding	24776	opposite	1801_ID	chr11	26266187	26290962	24776	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	27
13042	ENST00000668852.1_3	ENST00000370904.6_5	chrX	130519426	130541057	AL135784.1	+	lncRNA	chrX	130407484	130712873	IGSF1	-	protein_coding	21631	opposite	4871_ID	chrX	130519427	130541057	21631	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	27
78211	ENST00000559875.1_3	ENST00000647232.1_2	chr15	48484387	48493881	AC066612.2	-	lncRNA	chr15	48470634	48595983	SLC12A1	+	protein_coding	9494	opposite	2370_ID	chr15	48484388	48493881	9494	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	27
88321	ENST00000579433.1	ENST00000399451.6_3	chr3	15738804	15738878	MIR3134	-	miRNA	chr3	15708742	15901278	ANKRD28	-	protein_coding	74	same	8258_ID	chr3	15738805	15738878	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	27
116391	ENST00000622792.1_1	ENST00000549151.5_6	chr12	48162311	48163431	AC004241.4	+	lncRNA	chr12	48131028	48164817	RAPGEF3	-	protein_coding	1120	opposite	120_ID	chr12	48162312	48163431	1120	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	27
90481	ENST00000580629.1	ENST00000283254.12_5	chr2	166005704	166005983	RN7SL455P	-	misc_RNA	chr2	165944035	166060560	SCN3A	-	protein_coding	279	same	10195_ID	chr2	166005705	166005983	279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	27
187	ENST00000267291.7_4	ENST00000319562.11_4	chr13	98828038	98829523	RNF113B	-	protein_coding	chr13	98795347	99107430	FARP1	+	protein_coding	1485	opposite	10539_ID	chr13	98828039	98829523	1485	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	26
333	ENST00000302548.5_2	ENST00000378168.8_8	chrX	41583433	41589383	GPR82	+	protein_coding	chrX	41374186	41782770	CASK	-	protein_coding	5950	opposite	7167_ID	chrX	41583434	41589383	5950	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	26
451	ENST00000319098.7_4	ENST00000507866.6_1	chr4	7432011	7436657	PSAPL1	-	protein_coding	chr4	7194264	7744554	SORCS2	+	protein_coding	4646	opposite	9661_ID	chr4	7432012	7436657	4646	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
615	ENST00000338616.5_2	ENST00000370904.6_5	chrX	130677949	130679030	OR13H1	+	protein_coding	chrX	130407484	130712873	IGSF1	-	protein_coding	1081	opposite	9356_ID	chrX	130677950	130679030	1081	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	26
629	ENST00000340457.8_4	ENST00000519541.1_3	chr7	102277471	102283238	UPK3BL1	-	protein_coding	chr7	102222969	102283316	AC105052.1	-	nonsense_mediated_decay	5767	same	12850_ID	chr7	102277472	102283238	5767	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	26
805	ENST00000362265.1	ENST00000672434.1_3	chr1	65524116	65524191	MIR101-1	-	miRNA	chr1	65298927	65533415	JAK1	-	protein_coding	75	same	7955_ID	chr1	65524117	65524191	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
860	ENST00000362650.1	ENST00000487694.7_3	chr3	77141207	77141314	RNU6-386P	+	snRNA	chr3	75955845	77696661	ROBO2	+	protein_coding	107	same	11199_ID	chr3	77141208	77141314	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
924	ENST00000363013.1	ENST00000531066.6_5	chr11	16863799	16864134	RN7SKP90	+	misc_RNA	chr11	16798843	17035961	PLEKHA7	-	protein_coding	335	opposite	9934_ID	chr11	16863800	16864134	335	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	26
1322	ENST00000365159.1	ENST00000263635.8_2	chr2	159883547	159883654	RNU6-580P	-	snRNA	chr2	159825151	160089170	TANC1	+	protein_coding	107	opposite	11352_ID	chr2	159883548	159883654	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
1502	ENST00000373040.4_2	ENST00000324765.13_3	chrX	96138906	96140466	RPA4	+	protein_coding	chrX	95939840	96859996	DIAPH2	+	protein_coding	1560	same	11949_ID	chrX	96138907	96140466	1560	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	26
1568	ENST00000378142.9_5	ENST00000378168.8_8	chrX	41548225	41556528	GPR34	+	protein_coding	chrX	41374186	41782770	CASK	-	protein_coding	8303	opposite	7164_ID	chrX	41548226	41556528	8303	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	26
2084	ENST00000384968.1	ENST00000310430.11_2	chr8	9599181	9599278	MIR597	+	miRNA	chr8	9413421	9639856	TNKS	+	protein_coding	97	same	8999_ID	chr8	9599182	9599278	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	26
2085	ENST00000384969.1	ENST00000542188.5_4	chr15	31357234	31357344	MIR211	-	miRNA	chr15	31293263	31453476	TRPM1	-	protein_coding	110	same	8174_ID	chr15	31357235	31357344	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	26
2355	ENST00000390815.1	ENST00000487694.7_3	chr3	76467046	76467131	AC026877.1	-	miRNA	chr3	75955845	77696661	ROBO2	+	protein_coding	85	opposite	2176_ID	chr3	76467047	76467131	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
2370	ENST00000390905.1	ENST00000378168.8_8	chrX	41430175	41430282	RNU6-1321P	-	snRNA	chrX	41374186	41782770	CASK	-	protein_coding	107	same	11005_ID	chrX	41430176	41430282	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	26
2384	ENST00000390955.1	ENST00000672434.1_3	chr1	65488650	65488757	RNU6-1176P	-	snRNA	chr1	65298927	65533415	JAK1	-	protein_coding	107	same	10880_ID	chr1	65488651	65488757	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
2755	ENST00000408370.1	ENST00000421699.7_6	chr9	131019985	131020068	AL590708.1	-	miRNA	chr9	131018107	131038268	GOLGA2	-	protein_coding	83	same	5780_ID	chr9	131019986	131020068	83	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	24	26
2915	ENST00000408735.1	ENST00000494072.3	chr1	19223564	19223642	MIR1290	-	miRNA	chr1	19175766	19247615	RP13-279N23.2	-	nonsense_mediated_decay	78	same	8055_ID	chr1	19223565	19223642	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	26
2959	ENST00000408855.1	ENST00000436443.5_4	chr2	213290986	213291084	MIR548F2	-	miRNA	chr2	212240445	213403565	ERBB4	-	protein_coding	98	same	8895_ID	chr2	213290987	213291084	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	26
3014	ENST00000410153.1	ENST00000255194.11_7	chr5	77352447	77352570	AC024568.1	-	miRNA	chr5	77298149	77590522	AP3B1	-	protein_coding	123	same	2018_ID	chr5	77352448	77352570	123	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	26
3200	ENST00000411037.1	ENST00000319562.11_4	chr13	98856088	98856446	RN7SKP8	-	misc_RNA	chr13	98795347	99107430	FARP1	+	protein_coding	358	opposite	9924_ID	chr13	98856089	98856446	358	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	26
3429	ENST00000415065.2_3	ENST00000539363.2_1	chr1	145541592	145542229	AC243547.1	-	lncRNA	chr1	145524989	145543862	ITGA10	+	protein_coding	637	opposite	4275_ID	chr1	145541593	145542229	637	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	25	26
3854	ENST00000426764.1_3	ENST00000414202.7_2	chr9	5719020	5720244	AL136980.1	-	lncRNA	chr9	5629106	5776557	RIC1	+	protein_coding	1224	opposite	4923_ID	chr9	5719021	5720244	1224	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	26
3900	ENST00000428429.1_3	ENST00000374140.6_1	chr9	116332469	116352299	AL162727.2	-	lncRNA	chr9	116207010	116360018	RGS3	+	protein_coding	19830	opposite	5221_ID	chr9	116332470	116352299	19830	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	21	26
4111	ENST00000434311.1_3	ENST00000261396.6_4	chr1	229576030	229576767	AL160004.1	-	lncRNA	chr1	229576005	229644088	NUP133	-	protein_coding	737	same	5128_ID	chr1	229576031	229576767	737	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	26	26
4356	ENST00000441019.1_3	ENST00000003084.11_2	chr7	117200786	117204730	CFTR-AS1	-	lncRNA	chr7	117120078	117308719	CFTR	+	protein_coding	3944	opposite	6632_ID	chr7	117200787	117204730	3944	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	26
4402	ENST00000442328.1_1	ENST00000355585.9_4	chr6	158422138	158423415	SYNJ2-IT1	+	lncRNA	chr6	158402894	158520208	SYNJ2	+	protein_coding	1277	same	12588_ID	chr6	158422139	158423415	1277	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	26
4428	ENST00000442850.1_1	ENST00000409379.8_4	chr8	145663057	145665354	TONSL-AS1	+	lncRNA	chr8	145654157	145669823	TONSL	-	protein_coding	2297	opposite	12760_ID	chr8	145663058	145665354	2297	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	26
4435	ENST00000443093.2_3	ENST00000638452.2_2	chr5	131804581	131808735	AC116366.1	-	lncRNA	chr5	131746523	131981771	AC116366.2	+	protein_coding	4154	opposite	3906_ID	chr5	131804582	131808735	4154	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	26
4446	ENST00000443692.1_3	ENST00000245957.10_5	chr20	20194942	20195906	AL049648.1	-	lncRNA	chr20	20033175	20341342	CFAP61	+	protein_coding	964	opposite	4629_ID	chr20	20194943	20195906	964	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	26
4464	ENST00000444302.1_1	ENST00000367800.8_4	chr6	135622705	135628296	AL049552.1	+	lncRNA	chr6	135604669	135818883	AHI1	-	protein_coding	5591	opposite	4622_ID	chr6	135622706	135628296	5591	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	26
4617	ENST00000448767.1_3	ENST00000404039.5_2	chr7	154630097	154657193	AC073336.1	-	lncRNA	chr7	153584181	154685995	DPP6	+	protein_coding	27096	opposite	2522_ID	chr7	154630098	154657193	27096	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	26
4655	ENST00000449805.2_3	ENST00000369701.8_2	chr10	106424365	106425958	SORCS3-AS1	-	lncRNA	chr10	106401047	107025000	SORCS3	+	protein_coding	1593	opposite	12488_ID	chr10	106424366	106425958	1593	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	26
4680	ENST00000450655.1_4	ENST00000638452.2_2	chr5	131877757	131892530	IL5	-	protein_coding	chr5	131746523	131981771	AC116366.2	+	protein_coding	15394	opposite	7354_ID	chr5	131877758	131892530	14773	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	26
4881	ENST00000455991.1_3	ENST00000324695.9_2	chr2	234854789	234864079	AC005538.1	-	lncRNA	chr2	234826017	234928166	TRPM8	+	protein_coding	9290	opposite	310_ID	chr2	234854790	234864079	9290	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	26
4907	ENST00000456638.2_3	ENST00000604729.6_3	chr10	75556271	75561157	ZSWIM8-AS1	-	lncRNA	chr10	75545363	75561551	ZSWIM8	+	protein_coding	4886	opposite	13088_ID	chr10	75556272	75561157	4886	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	26
5220	ENST00000464966.2	ENST00000324765.13_3	chrX	96596044	96596341	RN7SL74P	+	misc_RNA	chrX	95939840	96859996	DIAPH2	+	protein_coding	297	same	10405_ID	chrX	96596045	96596341	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	26
5306	ENST00000470758.1_3	ENST00000245957.10_5	chr20	20075044	20076328	AL035454.1	-	lncRNA	chr20	20033175	20341342	CFAP61	+	protein_coding	1284	opposite	4609_ID	chr20	20075045	20076328	1284	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	26
5387	ENST00000475761.2	ENST00000378168.8_8	chrX	41542423	41542719	RN7SL144P	-	misc_RNA	chrX	41374186	41782770	CASK	-	protein_coding	296	same	9974_ID	chrX	41542424	41542719	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	26
5650	ENST00000494227.2	ENST00000651989.2_2	chr1	70345274	70345577	RN7SL538P	+	misc_RNA	chr1	70033604	70610047	LRRC7	+	protein_coding	303	same	10260_ID	chr1	70345275	70345577	303	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	26
5825	ENST00000504737.1_3	ENST00000504381.5_1	chr3	130618257	130648820	AC055733.2	-	lncRNA	chr3	130569438	130735528	ATP2C1	+	protein_coding	30563	opposite	2332_ID	chr3	130618258	130648820	30563	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	26
5883	ENST00000506475.1_3	ENST00000513024.5_1	chr4	41690874	41694814	AC105389.2	-	lncRNA	chr4	41361623	41701020	LIMCH1	+	protein_coding	3940	opposite	3617_ID	chr4	41690875	41694814	3940	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	24	26
5904	ENST00000506925.2_3	ENST00000537927.5_1	chr12	27699982	27705706	AC087257.1	-	lncRNA	chr12	27677114	27848496	PPFIBP1	+	protein_coding	5724	opposite	2787_ID	chr12	27699983	27705706	5724	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	26
5980	ENST00000509497.1_1	ENST00000513000.5_5	chr4	143487171	143582103	AC139720.1	+	lncRNA	chr4	142944312	143767443	INPP4B	-	protein_coding	94932	opposite	4210_ID	chr4	143487172	143582103	94932	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
6073	ENST00000512279.1_1	ENST00000655556.1_1	chr16	76668894	76692375	LINC02125	+	lncRNA	chr16	76311185	76707252	AC106741.1	+	nonsense_mediated_decay	23481	same	7731_ID	chr16	76668895	76692375	23481	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	25	26
6155	ENST00000514766.1_1	ENST00000513000.5_5	chr4	143435598	143440136	AC139720.2	+	lncRNA	chr4	142944312	143767443	INPP4B	-	protein_coding	4538	opposite	4211_ID	chr4	143435599	143440136	4538	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
6226	ENST00000515949.1	ENST00000505450.5_3	chr4	16010298	16010410	RNU6-350P	-	snRNA	chr4	15969850	16086001	PROM1	-	protein_coding	112	same	11173_ID	chr4	16010299	16010410	112	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	26
6233	ENST00000515985.1	ENST00000205061.9_5	chr16	74490438	74490509	RNU6-237P	+	snRNA	chr16	74481324	74641012	GLG1	-	protein_coding	71	opposite	11092_ID	chr16	74490439	74490509	71	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	26
6236	ENST00000515998.1	ENST00000378168.8_8	chrX	41778506	41778602	RNU6-202P	-	snRNA	chrX	41374186	41782770	CASK	-	protein_coding	96	same	11071_ID	chrX	41778507	41778602	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	26
6276	ENST00000516119.1	ENST00000531066.6_5	chr11	16995967	16996035	RNU6-585P	-	snRNA	chr11	16798843	17035961	PLEKHA7	-	protein_coding	68	same	11356_ID	chr11	16995968	16996035	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	26
6431	ENST00000516569.1	ENST00000265755.7_2	chr7	73985676	73985754	AC004851.1	+	miRNA	chr7	73868119	74016917	GTF2IRD1	+	protein_coding	78	same	186_ID	chr7	73985677	73985754	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	26
6584	ENST00000517008.1	ENST00000271877.11_4	chr1	154226920	154226997	AL590431.1	+	miRNA	chr1	154193324	154243985	UBAP2L	+	protein_coding	77	same	5767_ID	chr1	154226921	154226997	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	26
6913	ENST00000523598.1_1	ENST00000327245.10_6	chr5	160040879	160066190	AC008456.1	+	lncRNA	chr5	159990126	160279218	ATP10B	-	protein_coding	25311	opposite	734_ID	chr5	160040880	160066190	25311	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	26
6932	ENST00000524198.1_1	ENST00000327245.10_6	chr5	160112357	160119896	AC011363.1	+	lncRNA	chr5	159990126	160279218	ATP10B	-	protein_coding	28303	opposite	1196_ID	chr5	160112358	160119896	7539	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	26
6949	ENST00000524987.1_3	ENST00000355303.9_3	chr11	70033893	70034615	ANO1-AS1	-	lncRNA	chr11	69924407	70035634	ANO1	+	protein_coding	722	opposite	5957_ID	chr11	70033894	70034615	722	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	26	26
7104	ENST00000530525.1_1	ENST00000355303.9_3	chr11	69975402	69995729	AP000879.2	+	lncRNA	chr11	69924407	70035634	ANO1	+	protein_coding	20327	same	6044_ID	chr11	69975403	69995729	20327	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	26
7617	ENST00000554614.2_3	ENST00000340738.9_3	chr14	73709358	73712687	AC004846.1	-	lncRNA	chr14	73704204	73741348	PAPLN	+	protein_coding	3329	opposite	184_ID	chr14	73709359	73712687	3329	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	26
7678	ENST00000556578.1_3	ENST00000340738.9_3	chr14	73738889	73740789	AC004846.2	-	lncRNA	chr14	73704204	73741348	PAPLN	+	protein_coding	1900	opposite	185_ID	chr14	73738890	73740789	1900	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	26	26
7814	ENST00000559867.1_1	ENST00000354181.8_4	chr15	34547486	34550033	AC079203.2	+	lncRNA	chr15	34521984	34629982	SLC12A6	-	protein_coding	2547	opposite	2628_ID	chr15	34547487	34550033	2547	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	26
8316	ENST00000571085.1_1	ENST00000269392.8_5	chr17	79171192	79174088	AC027601.2	+	lncRNA	chr17	79163395	79196799	CEP131	-	protein_coding	2896	opposite	2217_ID	chr17	79171193	79174088	2896	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	26
8390	ENST00000574885.1_3	ENST00000637138.1_2	chr17	2865541	2869189	AC015921.1	-	lncRNA	chr17	2658998	2937501	RAP1GAP2	+	protein_coding	3648	opposite	1507_ID	chr17	2865542	2869189	3648	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	26
8456	ENST00000577291.1	ENST00000543185.6_3	chr2	239990614	239990708	AC017028.6	-	miRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	94	same	1595_ID	chr2	239990615	239990708	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	26
8459	ENST00000577305.1	ENST00000494072.3	chr1	19209695	19209769	MIR4695	-	miRNA	chr1	19175766	19247615	RP13-279N23.2	-	nonsense_mediated_decay	74	same	8681_ID	chr1	19209696	19209769	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	26
8468	ENST00000577359.1	ENST00000543185.6_3	chr2	239991153	239991247	AC017028.4	-	miRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	94	same	1593_ID	chr2	239991154	239991247	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	26
8483	ENST00000577404.1	ENST00000675386.2_2	chr17	79418129	79418214	MIR3186	-	miRNA	chr17	79369256	79433357	BAHCC1	+	protein_coding	85	opposite	8300_ID	chr17	79418130	79418214	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	26
8614	ENST00000578126.1	ENST00000507866.6_1	chr4	7312176	7312251	MIR4798	+	miRNA	chr4	7194264	7744554	SORCS2	+	protein_coding	75	same	8782_ID	chr4	7312177	7312251	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	26
8691	ENST00000578594.1	ENST00000346991.9_2	chr15	40907864	40908126	RN7SL376P	-	misc_RNA	chr15	40886217	40956540	KNL1	+	protein_coding	262	opposite	10140_ID	chr15	40907865	40908126	262	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	26
8706	ENST00000578705.1	ENST00000543185.6_3	chr2	240227156	240227240	MIR4269	+	miRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	84	opposite	8469_ID	chr2	240227157	240227240	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
8788	ENST00000579161.1	ENST00000543185.6_3	chr2	239990761	239990855	AC017028.10	-	miRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	94	same	1590_ID	chr2	239990762	239990855	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	26
8807	ENST00000579317.1	ENST00000370056.9_4	chr1	108318795	108318878	AL591042.1	-	miRNA	chr1	108113782	108507802	VAV3	-	protein_coding	83	same	5788_ID	chr1	108318796	108318878	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	26
8858	ENST00000579577.1	ENST00000507866.6_1	chr4	7461754	7461845	MIR4274	+	miRNA	chr4	7194264	7744554	SORCS2	+	protein_coding	91	same	8474_ID	chr4	7461755	7461845	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
8908	ENST00000579869.1	ENST00000543185.6_3	chr2	240008038	240008138	AC017028.7	-	miRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	100	same	1596_ID	chr2	240008039	240008138	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	26
9009	ENST00000580455.1	ENST00000672434.1_3	chr1	65523437	65523525	MIR3671	-	miRNA	chr1	65298927	65533415	JAK1	-	protein_coding	88	same	8380_ID	chr1	65523438	65523525	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
9025	ENST00000580555.1	ENST00000531066.6_5	chr11	17029424	17029515	AC116533.3	-	miRNA	chr11	16798843	17035961	PLEKHA7	-	protein_coding	91	same	3911_ID	chr11	17029425	17029515	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	26
9142	ENST00000581111.1	ENST00000543185.6_3	chr2	239991300	239991394	AC017028.9	-	miRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	94	same	1598_ID	chr2	239991301	239991394	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	26
9271	ENST00000581907.1	ENST00000642389.2_4	chr12	111925281	111925382	AC002395.1	-	miRNA	chr12	111881288	112036926	ATXN2	-	nonsense_mediated_decay	101	same	46_ID	chr12	111925282	111925382	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	26
9297	ENST00000582021.1	ENST00000378168.8_8	chrX	41496726	41497012	RN7SL406P	+	misc_RNA	chrX	41374186	41782770	CASK	-	protein_coding	286	opposite	10161_ID	chrX	41496727	41497012	286	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	26
9303	ENST00000582087.1	ENST00000245957.10_5	chr20	20297427	20297684	RN7SL690P	-	misc_RNA	chr20	20033175	20341342	CFAP61	+	protein_coding	257	opposite	10368_ID	chr20	20297428	20297684	257	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	26
9348	ENST00000582305.1	ENST00000651257.2_3	chr1	65045529	65045606	MIR4794	+	miRNA	chr1	64935811	65158736	CACHD1	+	protein_coding	77	same	8779_ID	chr1	65045530	65045606	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
9400	ENST00000582623.1	ENST00000543185.6_3	chr2	240007522	240007622	MIR4441	-	miRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	100	same	8544_ID	chr2	240007523	240007622	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	26
9419	ENST00000582699.1	ENST00000319562.11_4	chr13	98860777	98860854	MIR3170	+	miRNA	chr13	98795347	99107430	FARP1	+	protein_coding	77	same	8290_ID	chr13	98860778	98860854	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	26
9420	ENST00000582701.1	ENST00000543185.6_3	chr2	240007393	240007492	AC017028.8	-	miRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	99	same	1597_ID	chr2	240007394	240007492	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	26
9446	ENST00000582834.1	ENST00000543185.6_3	chr2	239991447	239991541	AC017028.5	-	miRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	94	same	1594_ID	chr2	239991448	239991541	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	26
9502	ENST00000583157.1	ENST00000264042.8_2	chr2	242417319	242417397	MIR3133	+	miRNA	chr2	242295699	242434256	FARP2	+	protein_coding	78	same	8256_ID	chr2	242417320	242417397	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	26
9647	ENST00000583986.1	ENST00000543185.6_3	chr2	239990512	239990610	MIR4440	-	miRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	98	same	8543_ID	chr2	239990513	239990610	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	26
9688	ENST00000584184.1	ENST00000675386.2_2	chr17	79374515	79374578	MIR4740	-	miRNA	chr17	79369256	79433357	BAHCC1	+	protein_coding	63	opposite	8726_ID	chr17	79374516	79374578	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
9698	ENST00000584260.1	ENST00000543185.6_3	chr2	239991055	239991149	AC017028.3	-	miRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	94	same	1592_ID	chr2	239991056	239991149	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	26
9757	ENST00000584559.1	ENST00000543185.6_3	chr2	240273418	240273499	MIR2467	-	miRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	81	same	8204_ID	chr2	240273419	240273499	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
9934	ENST00000586391.1_3	ENST00000357574.7_2	chr18	54539898	54541201	AC012301.1	-	lncRNA	chr18	54318591	54697042	WDR7	+	protein_coding	1303	opposite	1354_ID	chr18	54539899	54541201	1303	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	26
10214	ENST00000595998.1_1	ENST00000319562.11_4	chr13	98885903	98886954	AL445223.1	+	lncRNA	chr13	98795347	99107430	FARP1	+	protein_coding	1051	same	5618_ID	chr13	98885904	98886954	1051	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
10238	ENST00000596563.5_1	ENST00000536218.5_3	chr19	48621688	48630963	AC011466.3	+	lncRNA	chr19	48618702	48673860	LIG1	-	protein_coding	9275	opposite	1228_ID	chr19	48621689	48630963	9275	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	26
10270	ENST00000597248.1_3	ENST00000319562.11_4	chr13	98981908	98985490	AL161896.1	-	lncRNA	chr13	98795347	99107430	FARP1	+	protein_coding	3582	opposite	5179_ID	chr13	98981909	98985490	3582	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
10323	ENST00000598772.1_3	ENST00000512194.2_4	chr4	89444976	89446134	PIGY-DT	+	lncRNA	chr4	89444960	89629601	AC098582.1	+	protein_coding	1158	same	9557_ID	chr4	89444977	89446134	1158	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	26
10348	ENST00000599515.2_1	ENST00000080059.12_5	chr12	48178705	48179785	AC004466.1	+	lncRNA	chr12	48176504	48213686	HDAC7	-	protein_coding	1080	opposite	129_ID	chr12	48178706	48179785	1080	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	23	26
10826	ENST00000607528.1_1	ENST00000672434.1_3	chr1	65469152	65469770	AL357078.2	-	lncRNA	chr1	65298927	65533415	JAK1	-	protein_coding	618	same	5415_ID	chr1	65469153	65469770	618	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
11243	ENST00000613946.1_1	ENST00000267163.6_4	chr13	48914932	48915466	AL392048.1	-	lncRNA	chr13	48877886	49056026	RB1	+	protein_coding	534	opposite	5598_ID	chr13	48914933	48915466	534	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
11788	ENST00000630227.2_4	ENST00000481600.5_1	chr10	127414202	127438094	EDRF1-AS1	-	lncRNA	chr10	127408083	127452712	EDRF1	+	nonsense_mediated_decay	26477	opposite	6871_ID	chr10	127414203	127438094	23892	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	26
11828	ENST00000634604.2_5	ENST00000672434.1_3	chr1	65440293	65468172	LINC01359	-	lncRNA	chr1	65298927	65533415	JAK1	-	protein_coding	30265	same	7638_ID	chr1	65440294	65468172	27879	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
11897	ENST00000638628.1_1	ENST00000644820.1_4	chr2	1799296	1815298	AC093390.2	+	lncRNA	chr2	1792895	2335120	MYT1L	-	protein_coding	16002	opposite	3202_ID	chr2	1799297	1815298	16002	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	23	26
12064	ENST00000648391.1_3	ENST00000339303.5	chr16	18411864	18438140	AC126755.5	-	lncRNA	chr16	18411805	18441131	NPIPA8	-	protein_coding	26276	same	4025_ID	chr16	18411865	18438140	26276	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	6	26
12123	ENST00000649179.1_3	ENST00000355585.9_4	chr6	158421140	158421781	AL139330.1	-	lncRNA	chr6	158402894	158520208	SYNJ2	+	protein_coding	641	opposite	5037_ID	chr6	158421141	158421781	641	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	26
12195	ENST00000650778.1_2	ENST00000435030.1	chr2	149666974	149684823	AC105402.1	-	lncRNA	chr2	149632818	149883273	KIF5C	+	protein_coding	35377	opposite	3619_ID	chr2	149666975	149684823	17849	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	26
12201	ENST00000650944.1_3	ENST00000288670.14_2	chr2	153491781	153497789	AC012443.2	-	lncRNA	chr2	153191687	153506340	FMNL2	+	protein_coding	6008	opposite	1385_ID	chr2	153491782	153497789	6008	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	22	26
12307	ENST00000653060.1_1	ENST00000543185.6_3	chr2	240115813	240119350	AC017028.2	+	lncRNA	chr2	239969863	240322714	HDAC4	-	protein_coding	128491	opposite	1591_ID	chr2	240115814	240119350	3537	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	26
12430	ENST00000656012.1_3	ENST00000651989.2_2	chr1	70172632	70175957	AL117353.1	-	lncRNA	chr1	70033604	70610047	LRRC7	+	protein_coding	3325	opposite	4730_ID	chr1	70172633	70175957	3325	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
12485	ENST00000657185.1_2	ENST00000264042.8_2	chr2	242300305	242312164	AC005104.2	-	lncRNA	chr2	242295699	242434256	FARP2	+	protein_coding	11859	opposite	239_ID	chr2	242300306	242312164	11859	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	26
12746	ENST00000662495.1_1	ENST00000263054.10_3	chr10	108408656	108436538	AL133395.1	+	lncRNA	chr10	108333420	108924292	SORCS1	-	protein_coding	27882	opposite	4853_ID	chr10	108408657	108436538	27882	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	26
12796	ENST00000663424.1_3	ENST00000645057.1_1	chr1	44150793	44173036	KDM4A-AS1	-	lncRNA	chr1	44115819	44396686	AL451062.2	+	nonsense_mediated_decay	23016	opposite	7432_ID	chr1	44150794	44173036	22243	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	26
12969	ENST00000667182.1_1	ENST00000441802.7_5	chr4	187622732	187625240	AC107050.1	+	lncRNA	chr4	187508947	187645010	FAT1	-	protein_coding	2508	opposite	3681_ID	chr4	187622733	187625240	2508	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	26
12998	ENST00000667807.1_1	ENST00000367800.8_4	chr6	135644536	135649103	AL049552.2	+	lncRNA	chr6	135604669	135818883	AHI1	-	protein_coding	4567	opposite	4623_ID	chr6	135644537	135649103	4567	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	26
52361	ENST00000465742.2_1	ENST00000647725.1_4	chr3	71338919	71355004	FOXP1-AS1	+	lncRNA	chr3	71008376	71803380	AC097634.4	-	protein_coding	16085	opposite	7067_ID	chr3	71338920	71355004	16085	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	10	26
57761	ENST00000502636.1_1	ENST00000672739.1_3	chr4	2141399	2142785	AL136360.2	+	lncRNA	chr4	2080724	2244003	HAUS3	-	nonsense_mediated_decay	1386	opposite	4903_ID	chr4	2141400	2142785	1386	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	26
31	ENST00000222254.13_2	ENST00000593731.1_3	chr19	18263972	18281342	PIK3R2	+	protein_coding	chr19	18263967	18288927	AC007192.1	+	nonsense_mediated_decay	17370	same	9560_ID	chr19	18263973	18281342	17370	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	25
141	ENST00000257336.6_2	ENST00000639435.1_3	chr13	103451468	103493883	BIVM	+	protein_coding	chr13	103451459	103528344	BIVM-ERCC5	+	protein_coding	42415	same	6419_ID	chr13	103451469	103493883	42415	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	25
421	ENST00000314099.10_4	ENST00000414305.5_2	chr6	132029580	132032157	CTAGE9	-	protein_coding	chr6	131949600	132068558	ENPP3	+	protein_coding	2577	opposite	6731_ID	chr6	132029581	132032157	2577	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	25
431	ENST00000315453.4_4	ENST00000414305.5_2	chr6	132020783	132022541	OR2A4	-	protein_coding	chr6	131949600	132068558	ENPP3	+	protein_coding	1758	opposite	9375_ID	chr6	132020784	132022541	1758	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	25
489	ENST00000323061.7_4	ENST00000512194.2_4	chr4	89617063	89618980	NAP1L5	-	protein_coding	chr4	89444960	89629601	AC098582.1	+	protein_coding	1917	opposite	9225_ID	chr4	89617064	89618980	1917	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	25
497	ENST00000324341.2_2	ENST00000547776.6_3	chr12	100041530	100043892	FAM71C	+	protein_coding	chr12	99129199	100378015	ANKS1B	-	protein_coding	2362	opposite	6995_ID	chr12	100041531	100043892	2362	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	25
906	ENST00000362918.1	ENST00000492622.6_4	chr13	49669526	49669628	RNY3P2	+	misc_RNA	chr13	49550047	49783915	FNDC3A	+	protein_coding	102	same	11839_ID	chr13	49669527	49669628	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	25
960	ENST00000363236.1	ENST00000374566.7_3	chr9	111958480	111958589	RNU6-984P	-	snRNA	chr9	111934254	112083244	EPB41L4B	-	protein_coding	109	same	11652_ID	chr9	111958481	111958589	109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	25
1199	ENST00000364502.1	ENST00000657241.1_3	chr20	42101652	42101759	RNU6-1251P	+	snRNA	chr20	42086693	42170521	AL031681.2	+	protein_coding	107	same	10948_ID	chr20	42101653	42101759	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	25
1257	ENST00000364792.1	ENST00000492622.6_4	chr13	49562050	49562153	RNU6-60P	+	snRNA	chr13	49550047	49783915	FNDC3A	+	protein_coding	103	same	11378_ID	chr13	49562051	49562153	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
1505	ENST00000373226.2_1	ENST00000251195.9_5	chr1	36204989	36209177	AL354864.1	+	lncRNA	chr1	36185818	36235568	CLSPN	-	protein_coding	4188	opposite	5293_ID	chr1	36204990	36209177	4188	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	25
1583	ENST00000379555.7_1	ENST00000515235.6_1	chr5	118965253	118971517	FAM170A	+	nonsense_mediated_decay	chr5	118788210	118972894	HSD17B4	+	retained_intron	6264	same	6964_ID	chr5	118965254	118971517	6264	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	24	25
1620	ENST00000381217.2_3	ENST00000512091.6_2	chr4	62285963	62293939	AC020741.1	-	lncRNA	chr4	62066975	62944053	ADGRL3	+	protein_coding	7976	opposite	1731_ID	chr4	62285964	62293939	7976	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	25
1929	ENST00000384630.1	ENST00000380701.8_2	chr9	15776178	15776284	RNU6-14P	-	snRNA	chr9	15553040	15974035	CCDC171	+	protein_coding	106	opposite	11034_ID	chr9	15776179	15776284	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	25
1986	ENST00000384793.1	ENST00000512194.2_4	chr4	89605998	89606105	RNU6-33P	-	snRNA	chr4	89444960	89629601	AC098582.1	+	protein_coding	107	opposite	11165_ID	chr4	89605999	89606105	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	25
2803	ENST00000408501.1	ENST00000403951.6_5	chr7	14815030	14815148	AC006150.2	+	miRNA	chr7	14184673	14942986	DGKB	-	protein_coding	118	opposite	432_ID	chr7	14815031	14815148	118	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	25
2815	ENST00000408521.1	ENST00000354981.7_6	chr20	16390941	16391036	AL118509.1	-	miRNA	chr20	16252748	16554093	KIF16B	-	protein_coding	95	same	4734_ID	chr20	16390942	16391036	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	25
2843	ENST00000408587.1	ENST00000302516.10_2	chr16	70563411	70563491	SNORD111B	+	snoRNA	chr16	70557718	70611571	SF3B3	+	protein_coding	80	same	12233_ID	chr16	70563412	70563491	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	25
2852	ENST00000408606.1	ENST00000360256.9_4	chrX	154115634	154115733	MIR1184-1	-	miRNA	chrX	154064066	154250998	F8	-	protein_coding	99	same	7970_ID	chrX	154115635	154115733	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	25
3157	ENST00000410782.1	ENST00000258399.8_4	chr2	219365451	219365760	RN7SKP38	-	misc_RNA	chr2	219314973	219433074	USP37	-	protein_coding	309	same	9893_ID	chr2	219365452	219365760	309	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	25
3304	ENST00000412014.1_1	ENST00000403951.6_5	chr7	14853755	14856190	AC006150.1	+	lncRNA	chr7	14184673	14942986	DGKB	-	protein_coding	2435	opposite	431_ID	chr7	14853756	14856190	2435	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	25
3399	ENST00000414544.1_1	ENST00000373823.7_5	chr9	124043045	124047808	GSN-AS1	-	lncRNA	chr9	123970077	124095121	GSN	+	protein_coding	4763	opposite	7190_ID	chr9	124043046	124047808	4763	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	9	25
3439	ENST00000415275.1_3	ENST00000264377.8_3	chr2	207471220	207474536	AC010731.1	-	lncRNA	chr2	207308255	207485851	ADAM23	+	protein_coding	3316	opposite	1133_ID	chr2	207471221	207474536	3316	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	25
3528	ENST00000417844.1_3	ENST00000410059.6_4	chr2	115586008	115591125	DPP10-AS3	-	lncRNA	chr2	115200217	116603356	DPP10	+	protein_coding	5117	opposite	6842_ID	chr2	115586009	115591125	5117	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
3697	ENST00000422175.1_1	ENST00000644820.1_4	chr2	2323003	2330882	MYT1L-AS1	+	lncRNA	chr2	1792895	2335120	MYT1L	-	protein_coding	7879	opposite	9215_ID	chr2	2323004	2330882	7879	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
3740	ENST00000423194.1_1	ENST00000396946.9_4	chr7	2983668	2986725	CARD11-AS1	+	lncRNA	chr7	2945775	3083501	CARD11	-	protein_coding	3057	opposite	6551_ID	chr7	2983669	2986725	3057	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	25
3773	ENST00000424244.1_1	ENST00000652469.1_2	chr5	131339284	131342715	ACSL6-AS1	+	lncRNA	chr5	131247508	131347330	AC034228.3	-	nonsense_mediated_decay	3431	opposite	4336_ID	chr5	131339285	131342715	3431	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
3861	ENST00000426976.1_1	ENST00000644820.1_4	chr2	1828183	1832439	AC093390.1	+	lncRNA	chr2	1792895	2335120	MYT1L	-	protein_coding	4256	opposite	3201_ID	chr2	1828184	1832439	4256	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	25
4017	ENST00000431604.1_3	ENST00000424789.6_2	chr17	61458591	61491673	AC005828.1	-	lncRNA	chr17	61086916	61505060	TANC2	+	protein_coding	33200	opposite	362_ID	chr17	61458592	61491673	33082	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	25
4023	ENST00000431813.1_1	ENST00000358077.9_1	chr9	90168368	90169374	DAPK1-IT1	+	lncRNA	chr9	90112142	90323546	DAPK1	+	protein_coding	1006	same	6767_ID	chr9	90168369	90169374	1006	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	25
4224	ENST00000437135.1_3	ENST00000373823.7_5	chr9	124042140	124045008	AL513122.2	-	lncRNA	chr9	123970077	124095121	GSN	+	protein_coding	2868	opposite	5700_ID	chr9	124042141	124045008	2868	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	9	25
4242	ENST00000437753.1_3	ENST00000645057.1_1	chr1	44175062	44193014	ST3GAL3-AS1	-	lncRNA	chr1	44115819	44396686	AL451062.2	+	nonsense_mediated_decay	17952	opposite	12555_ID	chr1	44175063	44193014	17952	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	25
4251	ENST00000438219.1_1	ENST00000310441.12_5	chrX	153234775	153235538	HCFC1-AS1	+	lncRNA	chrX	153213007	153237269	HCFC1	-	protein_coding	763	opposite	7221_ID	chrX	153234776	153235538	763	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
4366	ENST00000441212.1_3	ENST00000409080.6_6	chr2	173292501	173293331	AC078883.2	-	lncRNA	chr2	173292313	173371187	ITGA6	+	protein_coding	830	opposite	2600_ID	chr2	173292502	173293331	830	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	25
4534	ENST00000446335.1_3	ENST00000404039.5_2	chr7	153723371	153735689	AC006019.3	-	lncRNA	chr7	153584181	154685995	DPP6	+	protein_coding	12318	opposite	398_ID	chr7	153723372	153735689	12318	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
4560	ENST00000446992.1_3	ENST00000410059.6_4	chr2	115591406	115593165	DPP10-AS2	-	lncRNA	chr2	115200217	116603356	DPP10	+	protein_coding	1759	opposite	6841_ID	chr2	115591407	115593165	1759	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
4563	ENST00000447057.1_3	ENST00000406451.8_2	chr7	18931718	18939056	HDAC9-AS1	-	lncRNA	chr7	18535368	19042039	HDAC9	+	protein_coding	7338	opposite	7223_ID	chr7	18931719	18939056	7338	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	25
4644	ENST00000449462.1_1	ENST00000357447.7_5	chr10	13771382	13798200	AL157392.2	+	lncRNA	chr10	13685705	14372923	FRMD4A	-	protein_coding	26818	opposite	5056_ID	chr10	13771383	13798200	26818	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	25
4699	ENST00000451116.1_3	ENST00000404039.5_2	chr7	153789285	153793128	AC006019.2	-	lncRNA	chr7	153584181	154685995	DPP6	+	protein_coding	3843	opposite	397_ID	chr7	153789286	153793128	3843	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
4765	ENST00000452633.5_2	ENST00000490848.5_1	chr15	42129972	42140345	PLA2G4B	+	protein_coding	chr15	42120292	42140353	JMJD7-PLA2G4B	+	retained_intron	10373	same	9569_ID	chr15	42129973	42140345	10373	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	25
4895	ENST00000456273.1_1	ENST00000377351.8_1	chrX	47064319	47065264	INE1	+	lncRNA	chrX	47050259	47074527	UBA1	+	protein_coding	945	same	7355_ID	chrX	47064320	47065264	945	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	25
4970	ENST00000458314.1_3	ENST00000409080.6_6	chr2	173328989	173330750	ITGA6-AS1	-	lncRNA	chr2	173292313	173371187	ITGA6	+	protein_coding	1761	opposite	7376_ID	chr2	173328990	173330750	1761	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	25
5000	ENST00000458813.1	ENST00000531894.5_3	chr16	70064248	70064325	MIR1972-2	+	miRNA	chr16	70010199	70099851	PDXDC2P-NPIPB14P	-	lncRNA	77	opposite	8159_ID	chr16	70064249	70064325	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	25
5504	ENST00000484215.2	ENST00000415807.7_2	chr3	171955115	171955384	RN7SL141P	+	misc_RNA	chr3	171757367	172119459	FNDC3B	+	protein_coding	269	same	9972_ID	chr3	171955116	171955384	269	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	25
5505	ENST00000484259.3_5	ENST00000642889.1_1	chr9	71650667	71693992	FXN	+	protein_coding	chr9	71650665	71870103	AL358113.1	+	protein_coding	43326	same	7092_ID	chr9	71650668	71693992	43325	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	25
5761	ENST00000502284.1_1	ENST00000613205.4_5	chr11	71725336	71731956	AP002490.1	+	lncRNA	chr11	71713910	71791739	NUMA1	-	protein_coding	64130	opposite	6190_ID	chr11	71725337	71731956	6620	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	25
5763	ENST00000502413.2_3	ENST00000371037.9_2	chr1	67131546	67142710	AL139147.1	-	lncRNA	chr1	66999835	67216822	SGIP1	+	protein_coding	11164	opposite	5014_ID	chr1	67131547	67142710	11164	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	25
5764	ENST00000502430.2_1	ENST00000549185.5_5	chr14	31889963	31922089	AL139353.2	+	lncRNA	chr14	31803517	31926647	AL139353.1	-	nonsense_mediated_decay	32598	opposite	5042_ID	chr14	31889964	31922089	32126	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	25
5770	ENST00000502636.1_1	ENST00000511885.6_5	chr4	2141399	2142785	AL136360.2	+	lncRNA	chr4	2073644	2243848	POLN	-	protein_coding	1386	opposite	4904_ID	chr4	2141400	2142785	1386	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	25
6133	ENST00000514105.2_3	ENST00000338316.9_2	chr5	7707914	7749879	AC093305.1	-	lncRNA	chr5	7396250	7830194	ADCY2	+	protein_coding	41965	opposite	3195_ID	chr5	7707915	7749879	41965	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	25
6195	ENST00000515894.1	ENST00000381227.5_2	chr4	57868857	57868958	RNU6-998P	+	snRNA	chr4	57843907	57897324	POLR2B	+	protein_coding	101	same	11659_ID	chr4	57868858	57868958	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	25
6212	ENST00000515917.1	ENST00000358716.8_5	chr14	35314505	35314566	RNU7-41P	-	snRNA	chr14	35221936	35344853	BAZ1A	-	protein_coding	61	same	11780_ID	chr14	35314506	35314566	61	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	25
6371	ENST00000516392.1	ENST00000645057.1_1	chr1	44182137	44182227	RNU6-1058P	+	snRNA	chr1	44115819	44396686	AL451062.2	+	nonsense_mediated_decay	90	same	10805_ID	chr1	44182138	44182227	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	25
6409	ENST00000516513.1	ENST00000512194.2_4	chr4	89504816	89505123	RN7SKP244	-	misc_RNA	chr4	89444960	89629601	AC098582.1	+	protein_coding	307	opposite	9852_ID	chr4	89504817	89505123	307	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
6493	ENST00000516751.1	ENST00000414305.5_2	chr6	131963957	131964106	RNU4-18P	-	snRNA	chr6	131949600	132068558	ENPP3	+	protein_coding	149	opposite	10663_ID	chr6	131963958	131964106	149	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	25
6592	ENST00000517030.1	ENST00000340738.9_3	chr14	73713525	73713588	RNU6-419P	-	snRNA	chr14	73704204	73741348	PAPLN	+	protein_coding	63	opposite	11221_ID	chr14	73713526	73713588	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	25
6678	ENST00000517237.1	ENST00000415876.6_4	chr2	162775291	162775376	AC092841.1	+	miRNA	chr2	162480847	162841792	SLC4A10	+	protein_coding	85	same	3160_ID	chr2	162775292	162775376	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	25
6814	ENST00000520496.1_2	ENST00000276480.11_3	chr8	53063379	53067452	AC021915.2	+	lncRNA	chr8	53023398	53322303	ST18	-	protein_coding	4073	opposite	1809_ID	chr8	53063380	53067452	4073	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	25
6868	ENST00000522228.1_2	ENST00000276480.11_3	chr8	53207014	53214502	AC103831.1	+	lncRNA	chr8	53023398	53322303	ST18	-	protein_coding	7488	opposite	3475_ID	chr8	53207015	53214502	7488	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	25
6877	ENST00000522541.1_1	ENST00000276480.11_3	chr8	53106921	53112140	AC021915.1	+	lncRNA	chr8	53023398	53322303	ST18	-	protein_coding	5219	opposite	1808_ID	chr8	53106922	53112140	5219	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	25
6898	ENST00000523101.1_3	ENST00000331493.7_5	chr17	45486687	45500892	AC040934.1	-	lncRNA	chr17	45401320	45518678	EFCAB13	+	protein_coding	14205	opposite	2294_ID	chr17	45486688	45500892	14205	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	21	25
7080	ENST00000529884.1_3	ENST00000409404.6_1	chr11	92481897	92500033	AP003718.1	-	lncRNA	chr11	92085261	92629618	FAT3	+	protein_coding	18136	opposite	6271_ID	chr11	92481898	92500033	18136	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	25
7120	ENST00000531111.1_3	ENST00000379719.8_2	chr11	9451902	9455033	AC132192.1	-	lncRNA	chr11	9406198	9469674	IPO7	+	protein_coding	3131	opposite	4098_ID	chr11	9451903	9455033	3131	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	25
7207	ENST00000534169.1_1	ENST00000646038.1_3	chr11	8700635	8702460	AC091053.2	+	lncRNA	chr11	8633586	8704205	TRIM66	-	protein_coding	1825	opposite	2972_ID	chr11	8700636	8702460	1825	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	25
7341	ENST00000542980.1_3	ENST00000261654.10_4	chr12	131474682	131478521	ADGRD1-AS1	-	lncRNA	chr12	131438451	131626014	ADGRD1	+	protein_coding	3839	opposite	4354_ID	chr12	131474683	131478521	3839	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	25
7449	ENST00000547633.2_1	ENST00000547776.6_3	chr12	99487136	99498789	AC117377.1	+	lncRNA	chr12	99129199	100378015	ANKS1B	-	protein_coding	11653	opposite	3925_ID	chr12	99487137	99498789	11653	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	25
7464	ENST00000548469.1_1	ENST00000261207.9_5	chr12	80217557	80219276	AC073569.1	+	lncRNA	chr12	80167342	80329235	PPP1R12A	-	protein_coding	1719	opposite	2530_ID	chr12	80217558	80219276	1719	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	25
7506	ENST00000550206.1_1	ENST00000545145.6_3	chr12	114370373	114375060	AC073863.1	+	lncRNA	chr12	114254546	114404111	RBM19	-	protein_coding	4687	opposite	2550_ID	chr12	114370374	114375060	4687	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	25
7526	ENST00000551372.1_1	ENST00000547776.6_3	chr12	99325459	99370434	AC069437.1	+	lncRNA	chr12	99129199	100378015	ANKS1B	-	protein_coding	44975	opposite	2489_ID	chr12	99325460	99370434	44975	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	25
7759	ENST00000558587.1_3	ENST00000441037.7_4	chr15	87482027	87531657	AC016987.1	-	lncRNA	chr15	86623203	87572283	AGBL1	+	protein_coding	49630	opposite	1576_ID	chr15	87482028	87531657	49630	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	24	25
8251	ENST00000568895.1_3	ENST00000395799.8_4	chr16	24814771	24831060	AC008731.1	-	lncRNA	chr16	24740971	24837539	TNRC6A	+	protein_coding	16289	opposite	783_ID	chr16	24814772	24831060	16289	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	25
8358	ENST00000573371.1_1	ENST00000341657.9_7	chr17	4067203	4068007	AC087292.1	+	lncRNA	chr17	4067114	4167274	ANKFY1	-	protein_coding	804	opposite	2804_ID	chr17	4067204	4068007	804	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	25	25
8576	ENST00000577855.1	ENST00000552844.5_3	chr1	94616293	94616610	RN7SL440P	+	misc_RNA	chr1	94615402	94740624	ARHGAP29	-	nonsense_mediated_decay	317	opposite	10183_ID	chr1	94616294	94616610	317	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	25
8589	ENST00000577945.1	ENST00000600859.5_1	chr19	50900509	50900775	RN7SL324P	+	misc_RNA	chr19	50887460	50921269	POLD1	+	nonsense_mediated_decay	266	same	10104_ID	chr19	50900510	50900775	266	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
8700	ENST00000578641.1	ENST00000374566.7_3	chr9	112028556	112028655	AL358815.1	+	miRNA	chr9	111934254	112083244	EPB41L4B	-	protein_coding	99	opposite	5466_ID	chr9	112028557	112028655	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	25
8708	ENST00000578710.1_3	ENST00000448331.7_2	chr17	16691561	16692548	AC098850.1	-	lncRNA	chr17	16593574	16707767	AC098850.3	+	nonsense_mediated_decay	987	opposite	3344_ID	chr17	16691562	16692548	987	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	25
9016	ENST00000580514.1	ENST00000359570.9_1	chr2	234113844	234114121	RN7SL32P	+	misc_RNA	chr2	233924676	234116549	INPP5D	+	protein_coding	277	same	10110_ID	chr2	234113845	234114121	277	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	25
9169	ENST00000581314.1	ENST00000358716.8_5	chr14	35270736	35270791	AL355885.1	-	miRNA	chr14	35221936	35344853	BAZ1A	-	protein_coding	55	same	5358_ID	chr14	35270737	35270791	55	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	25
9187	ENST00000581421.1_3	ENST00000424789.6_2	chr17	61271291	61416414	AC015923.1	-	lncRNA	chr17	61086916	61505060	TANC2	+	protein_coding	145124	opposite	1508_ID	chr17	61271292	61416414	145123	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	25
9329	ENST00000582212.2_3	ENST00000448331.7_2	chr17	16692192	16693815	FAM106C	+	lncRNA	chr17	16593574	16707767	AC098850.3	+	nonsense_mediated_decay	1623	same	6959_ID	chr17	16692193	16693815	1623	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	25
10181	ENST00000594589.1_1	ENST00000536218.5_3	chr19	48649164	48650670	AC011466.2	+	lncRNA	chr19	48618702	48673860	LIG1	-	protein_coding	1506	opposite	1227_ID	chr19	48649165	48650670	1506	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	25
10271	ENST00000597256.1_1	ENST00000597188.6_4	chr19	8646043	8647599	AC130469.1	+	lncRNA	chr19	8645123	8675600	ADAMTS10	-	protein_coding	1556	opposite	4071_ID	chr19	8646044	8647599	1556	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	25	25
10427	ENST00000602195.5_4	ENST00000618881.5_6	chrX	101615318	101694853	NXF2B	-	protein_coding	chrX	101615315	101718195	AC235565.2	-	nonsense_mediated_decay	79537	same	9320_ID	chrX	101615319	101694853	79535	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	25
10598	ENST00000604491.1_1	ENST00000647725.1_4	chr3	71634093	71636560	AC097634.1	+	lncRNA	chr3	71008376	71803380	AC097634.4	-	protein_coding	2467	opposite	3327_ID	chr3	71634094	71636560	2467	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	25
10715	ENST00000606527.1_1	ENST00000284376.8_5	chr1	52819158	52819549	AL513218.1	+	lncRNA	chr1	52816268	52831877	CC2D1B	-	protein_coding	391	opposite	5706_ID	chr1	52819159	52819549	391	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	24	25
10747	ENST00000606829.1_3	ENST00000274867.9_3	chr6	39856345	39865028	DAAM2-AS1	-	lncRNA	chr6	39760151	39872645	DAAM2	+	protein_coding	18268	opposite	6763_ID	chr6	39856346	39865028	8683	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	25
11105	ENST00000610495.1_1	ENST00000360256.9_4	chrX	154114623	154116336	F8A1	+	protein_coding	chrX	154064066	154250998	F8	-	protein_coding	1713	opposite	6952_ID	chrX	154114624	154116336	1713	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	25
11274	ENST00000614749.1_1	ENST00000080059.12_5	chr12	48211233	48211749	AC004466.2	-	lncRNA	chr12	48176504	48213686	HDAC7	-	protein_coding	516	same	130_ID	chr12	48211234	48211749	516	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
11306	ENST00000615576.1_1	ENST00000080059.12_5	chr12	48182208	48182754	AC004466.3	+	lncRNA	chr12	48176504	48213686	HDAC7	-	protein_coding	546	opposite	131_ID	chr12	48182209	48182754	546	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	25
11329	ENST00000616002.3_3	ENST00000373647.9_2	chr9	125795945	125797944	GPR21	+	protein_coding	chr9	125703298	125867145	RABGAP1	+	protein_coding	1999	same	7161_ID	chr9	125795946	125797944	1999	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	25
11442	ENST00000619055.1_1	ENST00000261207.9_5	chr12	80212563	80213245	AC073569.3	-	lncRNA	chr12	80167342	80329235	PPP1R12A	-	protein_coding	682	same	2531_ID	chr12	80212564	80213245	682	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	25
11494	ENST00000620016.2_2	ENST00000360256.9_4	chrX	154113246	154113833	H2AB1	+	protein_coding	chrX	154064066	154250998	F8	-	protein_coding	587	opposite	7207_ID	chrX	154113247	154113833	587	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	25
11790	ENST00000630404.1_1	ENST00000347869.8_2	chr3	50137035	50138421	RBM5-AS1	-	lncRNA	chr3	50126351	50156454	RBM5	+	protein_coding	1386	opposite	9715_ID	chr3	50137036	50138421	1386	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	25
12260	ENST00000652241.1_3	ENST00000324695.9_2	chr2	234886515	234888662	AC005538.3	-	lncRNA	chr2	234826017	234928166	TRPM8	+	protein_coding	2147	opposite	311_ID	chr2	234886516	234888662	2147	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	25
12491	ENST00000657267.1_3	ENST00000404039.5_2	chr7	153752666	153760410	AC006019.1	-	lncRNA	chr7	153584181	154685995	DPP6	+	protein_coding	8040	opposite	396_ID	chr7	153752667	153760410	7744	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
12818	ENST00000663947.1_1	ENST00000284037.10_3	chr5	65261200	65264971	AC010359.3	+	lncRNA	chr5	65222402	65378374	ERBIN	+	protein_coding	3771	same	1070_ID	chr5	65261201	65264971	3771	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
12826	ENST00000664094.1_3	ENST00000410059.6_4	chr2	115884198	115918776	DPP10-AS1	-	lncRNA	chr2	115200217	116603356	DPP10	+	protein_coding	34763	opposite	6840_ID	chr2	115884199	115918776	34578	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
12855	ENST00000664735.1_3	ENST00000410059.6_4	chr2	115836930	115856669	AC093610.1	-	lncRNA	chr2	115200217	116603356	DPP10	+	protein_coding	19739	opposite	3225_ID	chr2	115836931	115856669	19739	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
13076	ENST00000669369.1_3	ENST00000513024.5_1	chr4	41610328	41614428	AC108050.1	-	lncRNA	chr4	41361623	41701020	LIMCH1	+	protein_coding	4100	opposite	3714_ID	chr4	41610329	41614428	4100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	25
13108	ENST00000670244.1_3	ENST00000288670.14_2	chr2	153306675	153309405	AC012066.1	-	lncRNA	chr2	153191687	153506340	FMNL2	+	protein_coding	2730	opposite	1326_ID	chr2	153306676	153309405	2730	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
13178	ENST00000671644.1_3	ENST00000404039.5_2	chr7	154241253	154244370	AC024730.1	-	lncRNA	chr7	153584181	154685995	DPP6	+	protein_coding	3117	opposite	2035_ID	chr7	154241254	154244370	3117	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	25
28010	ENST00000294635.5_4	ENST00000326637.8_2	chr1	74935059	74978295	LRRC53	-	protein_coding	chr1	74701070	75010112	TNNI3K	+	protein_coding	43236	opposite	7863_ID	chr1	74935060	74978295	43236	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	22	25
49010	ENST00000323061.7_4	ENST00000402738.6_4	chr4	89617063	89618980	NAP1L5	-	protein_coding	chr4	89513630	89629690	HERC3	+	protein_coding	1917	opposite	9224_ID	chr4	89617064	89618980	1917	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	25
19881	ENST00000384793.1	ENST00000402738.6_4	chr4	89605998	89606105	RNU6-33P	-	snRNA	chr4	89513630	89629690	HERC3	+	protein_coding	107	opposite	11164_ID	chr4	89605999	89606105	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	25
27411	ENST00000408337.1	ENST00000647725.1_4	chr3	71591120	71591240	MIR1284	-	miRNA	chr3	71008376	71803380	AC097634.4	-	protein_coding	120	same	8043_ID	chr3	71591121	71591240	120	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	25
32681	ENST00000411403.1	ENST00000442822.6_3	chr6	32320653	32320760	RNU6-603P	+	snRNA	chr6	32256302	32339676	TSBP1	-	protein_coding	107	opposite	11371_ID	chr6	32320654	32320760	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	25
34571	ENST00000415549.2_3	ENST00000326637.8_2	chr1	74807262	74844486	AC093158.1	-	lncRNA	chr1	74701070	75010112	TNNI3K	+	protein_coding	37224	opposite	3185_ID	chr1	74807263	74844486	37224	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	25
57151	ENST00000498714.1_3	ENST00000647725.1_4	chr3	71619405	71623608	FOXP1-IT1	-	lncRNA	chr3	71008376	71803380	AC097634.4	-	protein_coding	4203	same	7068_ID	chr3	71619406	71623608	4203	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	25
64601	ENST00000516637.1	ENST00000448331.7_2	chr17	16595111	16595221	RNU6-405P	+	snRNA	chr17	16593574	16707767	AC098850.3	+	nonsense_mediated_decay	110	same	11215_ID	chr17	16595112	16595221	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
88931	ENST00000579771.1	ENST00000448612.6_8	chr6	170097343	170097429	AL513547.1	+	miRNA	chr6	169857306	170102125	WDR27	-	protein_coding	86	opposite	5717_ID	chr6	170097344	170097429	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	25
90681	ENST00000580704.1	ENST00000448331.7_2	chr17	16613372	16613673	RN7SL620P	+	misc_RNA	chr17	16593574	16707767	AC098850.3	+	nonsense_mediated_decay	301	same	10313_ID	chr17	16613373	16613673	301	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	25
112131	ENST00000613067.1_1	ENST00000647725.1_4	chr3	71630871	71677709	AC097634.3	+	lncRNA	chr3	71008376	71803380	AC097634.4	-	protein_coding	46838	opposite	3331_ID	chr3	71630872	71677709	46838	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	25
113231	ENST00000615819.1_1	ENST00000647725.1_4	chr3	71617013	71620263	AC097634.2	+	lncRNA	chr3	71008376	71803380	AC097634.4	-	protein_coding	3250	opposite	3329_ID	chr3	71617014	71620263	3250	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	25
130171	ENST00000668069.1_1	ENST00000659103.1_1	chr9	42408171	42474216	AL513478.4	+	lncRNA	chr9	42368419	42474223	BX664727.3	+	lncRNA	66045	same	5713_ID	chr9	42408172	42474216	66045	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	25
81	ENST00000242257.14_4	ENST00000651235.1_3	chr7	2273829	2281840	MRM2	-	protein_coding	chr7	1855439	2281850	AC069288.1	-	nonsense_mediated_decay	8011	same	9159_ID	chr7	2273830	2281840	8011	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	24
1115	ENST00000364025.1	ENST00000647893.1_2	chr6	132141473	132141793	RN7SKP245	+	misc_RNA	chr6	132129159	132216295	ENPP1	+	protein_coding	320	same	9853_ID	chr6	132141474	132141793	320	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
1264	ENST00000364817.1	ENST00000003302.8_3	chr11	113730067	113730171	RNU6-1107P	+	snRNA	chr11	113668595	113746292	USP28	-	protein_coding	104	opposite	10834_ID	chr11	113730068	113730171	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
1284	ENST00000364924.1	ENST00000396946.9_4	chr7	3038727	3039028	RN7SKP130	+	misc_RNA	chr7	2945775	3083501	CARD11	-	protein_coding	301	opposite	9781_ID	chr7	3038728	3039028	301	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
1316	ENST00000365128.1	ENST00000379719.8_2	chr11	9450319	9450501	SNORA23	+	snoRNA	chr11	9406198	9469674	IPO7	+	protein_coding	182	same	12163_ID	chr11	9450320	9450501	182	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	24
1648	ENST00000383868.1	ENST00000371733.8_4	chr1	51847979	51848086	RNU6-877P	+	snRNA	chr1	51819934	51984938	EPS15	-	protein_coding	107	opposite	11577_ID	chr1	51847980	51848086	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	24
1680	ENST00000383948.1	ENST00000381897.5_4	chr4	39299224	39299331	RNU6-32P	-	snRNA	chr4	39289075	39367995	RFC1	-	protein_coding	107	same	11157_ID	chr4	39299225	39299331	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	24
1727	ENST00000384056.1	ENST00000613205.4_5	chr11	71758918	71758997	RNU6-292P	-	snRNA	chr11	71713910	71791739	NUMA1	-	protein_coding	79	same	11134_ID	chr11	71758919	71758997	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
1957	ENST00000384721.1	ENST00000274376.11_3	chr5	86595503	86595614	RNU6-606P	-	snRNA	chr5	86563699	86687733	RASA1	+	protein_coding	111	opposite	11375_ID	chr5	86595504	86595614	111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
2092	ENST00000384979.1	ENST00000318006.10_5	chr15	42491767	42491864	MIR627	-	miRNA	chr15	42450898	42500502	VPS39	-	protein_coding	97	same	9030_ID	chr15	42491768	42491864	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
2188	ENST00000385200.1	ENST00000357533.6_6	chr9	73424890	73425000	MIR204	-	miRNA	chr9	73150859	74061751	TRPM3	-	protein_coding	110	same	8167_ID	chr9	73424891	73425000	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	24
2482	ENST00000394183.2_1	ENST00000039989.9_2	chr11	43411832	43417045	AC087276.1	+	lncRNA	chr11	43380469	43516481	TTC17	+	protein_coding	5213	same	2791_ID	chr11	43411833	43417045	5213	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	24
2537	ENST00000399123.2_1	ENST00000003302.8_3	chr11	113688798	113693180	AP003170.3	+	lncRNA	chr11	113668595	113746292	USP28	-	protein_coding	4382	opposite	6244_ID	chr11	113688799	113693180	4382	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	24
2598	ENST00000401282.1	ENST00000441867.6_7	chr6	30552108	30552194	MIR877	+	miRNA	chr6	30539200	30559299	ABCF1	+	protein_coding	86	same	9095_ID	chr6	30552109	30552194	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	24
2611	ENST00000401349.1	ENST00000393066.7_3	chr17	57066228	57066315	AC100832.1	-	miRNA	chr17	57060011	57184282	TRIM37	-	protein_coding	87	same	3431_ID	chr17	57066229	57066315	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	24
2679	ENST00000408173.1	ENST00000360252.8_6	chr13	37608813	37608929	AL138706.1	-	miRNA	chr13	37583452	37633850	SUPT20H	-	protein_coding	116	same	4968_ID	chr13	37608814	37608929	116	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	24
2696	ENST00000408232.1	ENST00000373700.9_4	chr10	69730029	69730126	AL356741.1	-	miRNA	chr10	69681661	69835040	HERC4	-	protein_coding	97	same	5396_ID	chr10	69730030	69730126	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	24
2908	ENST00000408728.2	ENST00000371037.9_2	chr1	67196649	67196741	AL354978.1	-	miRNA	chr1	66999835	67216822	SGIP1	+	protein_coding	92	opposite	5306_ID	chr1	67196650	67196741	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	24
2998	ENST00000409819.2_5	ENST00000498697.3_6	chr2	202940132	202981781	KIAA2012-AS1	-	lncRNA	chr2	202937977	203069911	KIAA2012	+	protein_coding	41653	opposite	7440_ID	chr2	202940133	202981781	41649	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	24
3058	ENST00000410369.1	ENST00000639435.1_3	chr13	103472342	103472419	RNY5P8	+	misc_RNA	chr13	103451459	103528344	BIVM-ERCC5	+	protein_coding	77	same	11870_ID	chr13	103472343	103472419	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	24
3189	ENST00000410966.1	ENST00000379454.9_6	chr8	62544238	62544571	RN7SKP97	-	misc_RNA	chr8	62413114	62627151	ASPH	-	protein_coding	333	same	9939_ID	chr8	62544239	62544571	333	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	24
3249	ENST00000411337.1	ENST00000524871.6_3	chr11	98990905	98991220	RN7SKP53	+	misc_RNA	chr11	98891678	100229616	CNTN5	+	protein_coding	315	same	9904_ID	chr11	98990906	98991220	315	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
3322	ENST00000412388.1_1	ENST00000357447.7_5	chr10	13752414	13754054	AL157392.1	+	lncRNA	chr10	13685705	14372923	FRMD4A	-	protein_coding	7077	opposite	5055_ID	chr10	13752415	13754054	1640	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	24
3433	ENST00000415119.1_1	ENST00000357533.6_6	chr9	73340955	73345772	AL159990.1	+	lncRNA	chr9	73150859	74061751	TRPM3	-	protein_coding	4817	opposite	5125_ID	chr9	73340956	73345772	4817	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	24
3728	ENST00000422930.2_3	ENST00000262903.9_4	chr6	105279003	105293695	AL357315.1	-	lncRNA	chr6	105175968	105307794	HACE1	-	protein_coding	14692	same	5423_ID	chr6	105279004	105293695	14692	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	24
3774	ENST00000424246.1_1	ENST00000371733.8_4	chr1	51927392	51929088	AC104170.1	+	lncRNA	chr1	51819934	51984938	EPS15	-	protein_coding	1696	opposite	3516_ID	chr1	51927393	51929088	1696	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	24
3992	ENST00000430748.1_3	ENST00000370728.5_6	chr1	82051625	82091398	AC117944.1	-	lncRNA	chr1	81771850	82458106	ADGRL2	+	protein_coding	39773	opposite	3942_ID	chr1	82051626	82091398	39773	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	24
4046	ENST00000432411.1_3	ENST00000422911.6_3	chr21	43294864	43297722	AP001619.1	-	lncRNA	chr21	43218384	43299582	PRDM15	-	protein_coding	2858	same	6152_ID	chr21	43294865	43297722	2858	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
4110	ENST00000434301.1_1	ENST00000317233.8_3	chr2	100721380	100723966	AC092667.1	+	lncRNA	chr2	100163717	100759037	AFF3	-	protein_coding	2586	opposite	3117_ID	chr2	100721381	100723966	2586	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	24
4195	ENST00000436491.1_1	ENST00000357533.6_6	chr9	73322962	73327779	AL159990.2	+	lncRNA	chr9	73150859	74061751	TRPM3	-	protein_coding	4817	opposite	5126_ID	chr9	73322963	73327779	4817	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	24
4282	ENST00000439024.1_1	ENST00000370728.5_6	chr1	81970783	81971981	AL138799.1	+	lncRNA	chr1	81771850	82458106	ADGRL2	+	protein_coding	1198	same	4977_ID	chr1	81970784	81971981	1198	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
4427	ENST00000442829.1_1	ENST00000457308.6_4	chr2	39088861	39090275	AC018693.1	+	lncRNA	chr2	39024870	39103075	DHX57	-	protein_coding	1414	opposite	1647_ID	chr2	39088862	39090275	1414	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	24
4453	ENST00000443939.1_3	ENST00000370728.5_6	chr1	81979564	82023387	AL138799.3	-	lncRNA	chr1	81771850	82458106	ADGRL2	+	protein_coding	43823	opposite	4978_ID	chr1	81979565	82023387	43823	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
4523	ENST00000446157.3_4	ENST00000468472.1_3	chr3	52867136	52869035	MUSTN1	-	protein_coding	chr3	52847297	52869745	AC006254.1	-	nonsense_mediated_decay	1906	same	9189_ID	chr3	52867137	52869035	1899	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	24
4525	ENST00000446193.1_1	ENST00000357447.7_5	chr10	14033814	14049525	AC044781.1	+	lncRNA	chr10	13685705	14372923	FRMD4A	-	protein_coding	15711	opposite	2299_ID	chr10	14033815	14049525	15711	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
4568	ENST00000447256.2_3	ENST00000418658.6_2	chr3	2152092	2185925	CNTN4-AS2	-	lncRNA	chr3	2140549	3099643	CNTN4	+	protein_coding	33833	opposite	6681_ID	chr3	2152093	2185925	33833	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
4755	ENST00000452378.1_1	ENST00000304457.11_4	chr1	11128527	11133154	AL109811.1	+	lncRNA	chr1	11126674	11159926	EXOSC10	-	protein_coding	4627	opposite	4706_ID	chr1	11128528	11133154	4627	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	24
4783	ENST00000453155.1_3	ENST00000335211.9_3	chr1	201191240	201192251	AC103925.1	-	lncRNA	chr1	201159951	201198080	IGFN1	+	protein_coding	1011	opposite	3489_ID	chr1	201191241	201192251	1011	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	24
4983	ENST00000458654.1_1	ENST00000422911.6_3	chr21	43290741	43292163	AP001619.2	+	lncRNA	chr21	43218384	43299582	PRDM15	-	protein_coding	1422	opposite	6153_ID	chr21	43290742	43292163	1422	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
5099	ENST00000459398.1	ENST00000443758.6_6	chr2	179696097	179696176	RNU7-104P	-	snRNA	chr2	179694483	179914790	CCDC141	-	protein_coding	79	same	11693_ID	chr2	179696098	179696176	79	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	24	24
5133	ENST00000459577.1	ENST00000356271.7_3	chr17	38183794	38183898	SNORD124	-	snoRNA	chr17	38175350	38210660	MED24	-	protein_coding	104	same	12365_ID	chr17	38183795	38183898	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	24
5156	ENST00000460754.1_3	ENST00000330909.12_3	chr3	65858489	65940233	MAGI1-IT1	-	lncRNA	chr3	65339199	66023983	MAGI1	-	protein_coding	81744	same	7908_ID	chr3	65858490	65940233	81744	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
5179	ENST00000462180.1_3	ENST00000264852.9_5	chr3	113307594	113309036	SIDT1-AS1	-	lncRNA	chr3	113251401	113348422	SIDT1	+	protein_coding	1442	opposite	12061_ID	chr3	113307595	113309036	1442	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	24
5202	ENST00000463821.2	ENST00000263208.5_4	chr22	19353288	19353565	RN7SL168P	+	misc_RNA	chr22	19318220	19419256	HIRA	-	protein_coding	277	opposite	9988_ID	chr22	19353289	19353565	277	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	24
5335	ENST00000472514.1_1	ENST00000330909.12_3	chr3	65879490	65910972	MAGI1-AS1	+	lncRNA	chr3	65339199	66023983	MAGI1	-	protein_coding	31482	opposite	7907_ID	chr3	65879491	65910972	31482	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
5423	ENST00000478366.1_1	ENST00000266041.9_5	chr3	52857950	52859330	ITIH4-AS1	+	lncRNA	chr3	52846977	52864688	ITIH4	-	protein_coding	1380	opposite	7379_ID	chr3	52857951	52859330	1380	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	24
5577	ENST00000489622.2	ENST00000274376.11_3	chr5	86590007	86590290	RN7SL629P	-	misc_RNA	chr5	86563699	86687733	RASA1	+	protein_coding	283	opposite	10320_ID	chr5	86590008	86590290	283	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
5828	ENST00000504817.1_1	ENST00000438447.2_2	chr5	31738375	31738767	AC022447.5	+	lncRNA	chr5	31639237	32111038	PDZD2	+	protein_coding	392	same	1865_ID	chr5	31738376	31738767	392	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
5897	ENST00000506865.1_1	ENST00000438447.2_2	chr5	31741939	31742434	AC022447.3	-	lncRNA	chr5	31639237	32111038	PDZD2	+	protein_coding	495	opposite	1864_ID	chr5	31741940	31742434	495	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
5983	ENST00000509629.1_1	ENST00000438447.2_2	chr5	31747750	31748185	AC022447.7	-	lncRNA	chr5	31639237	32111038	PDZD2	+	protein_coding	435	opposite	1867_ID	chr5	31747751	31748185	435	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
5987	ENST00000509750.1_1	ENST00000438447.2_2	chr5	31657324	31665174	AC022447.2	+	lncRNA	chr5	31639237	32111038	PDZD2	+	protein_coding	7850	same	1863_ID	chr5	31657325	31665174	7850	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
6091	ENST00000512642.1_3	ENST00000651543.1_1	chr5	269972	271631	AC021087.1	-	lncRNA	chr5	218412	315070	AC021087.5	+	nonsense_mediated_decay	1659	opposite	1777_ID	chr5	269973	271631	1659	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	17	24
6172	ENST00000515358.1_1	ENST00000438447.2_2	chr5	31744094	31744558	AC022447.1	-	lncRNA	chr5	31639237	32111038	PDZD2	+	protein_coding	464	opposite	1862_ID	chr5	31744095	31744558	464	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
6180	ENST00000515522.1_1	ENST00000438447.2_2	chr5	31754325	31754763	AC022447.6	+	lncRNA	chr5	31639237	32111038	PDZD2	+	protein_coding	438	same	1866_ID	chr5	31754326	31754763	438	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
6261	ENST00000516078.1	ENST00000438447.2_2	chr5	31832545	31832619	RNU6-760P	+	snRNA	chr5	31639237	32111038	PDZD2	+	protein_coding	74	same	11481_ID	chr5	31832546	31832619	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
6351	ENST00000516336.1	ENST00000355520.6_4	chrX	67321909	67321974	RNU6-1225P	-	snRNA	chrX	67262185	67653337	OPHN1	-	protein_coding	65	same	10925_ID	chrX	67321910	67321974	65	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	24
6428	ENST00000516564.1	ENST00000438447.2_2	chr5	31820670	31820745	RNU6-358P	-	snRNA	chr5	31639237	32111038	PDZD2	+	protein_coding	75	opposite	11179_ID	chr5	31820671	31820745	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
6552	ENST00000516934.1	ENST00000375755.8_3	chr6	31724727	31724830	RNU6-850P	-	snRNA	chr6	31707724	31730453	MSH5	+	protein_coding	103	opposite	11555_ID	chr6	31724728	31724830	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	24
6583	ENST00000517005.1	ENST00000655556.1_1	chr16	76321526	76321636	RN7SKP233	+	misc_RNA	chr16	76311185	76707252	AC106741.1	+	nonsense_mediated_decay	110	same	9839_ID	chr16	76321527	76321636	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	25
6993	ENST00000526935.1_3	ENST00000648804.1_1	chr11	22282754	22283802	AC107886.1	-	lncRNA	chr11	21821479	22304890	ANO5	+	processed_transcript	1048	opposite	3699_ID	chr11	22282755	22283802	1048	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	24
7032	ENST00000527912.1_1	ENST00000317025.13_6	chr8	38193498	38195069	AC087362.1	+	lncRNA	chr8	38127221	38239789	NSD3	-	protein_coding	1571	opposite	2807_ID	chr8	38193499	38195069	1571	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	24
7068	ENST00000529325.1_1	ENST00000317025.13_6	chr8	38133405	38134198	AC087362.2	+	lncRNA	chr8	38127221	38239789	NSD3	-	protein_coding	793	opposite	2808_ID	chr8	38133406	38134198	793	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	23	24
7085	ENST00000530042.1_3	ENST00000039989.9_2	chr11	43400431	43407221	AC087276.3	-	lncRNA	chr11	43380469	43516481	TTC17	+	protein_coding	6790	opposite	2792_ID	chr11	43400432	43407221	6790	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	24
7121	ENST00000531176.1_3	ENST00000409404.6_1	chr11	92133356	92141342	AP000722.1	-	lncRNA	chr11	92085261	92629618	FAT3	+	protein_coding	7986	opposite	6017_ID	chr11	92133357	92141342	7986	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
7202	ENST00000533964.1_3	ENST00000613246.4_1	chr11	48035957	48037407	PTPRJ-AS1	-	lncRNA	chr11	48002109	48192393	PTPRJ	+	protein_coding	1450	opposite	9679_ID	chr11	48035958	48037407	1450	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
7222	ENST00000535370.2_4	ENST00000261654.10_4	chr12	131513654	131520032	AC078925.1	-	lncRNA	chr12	131438451	131626014	ADGRD1	+	protein_coding	6378	opposite	2607_ID	chr12	131513655	131520032	6378	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	24
7263	ENST00000537998.1_1	ENST00000261654.10_4	chr12	131462106	131463313	AC073862.1	+	lncRNA	chr12	131438451	131626014	ADGRD1	+	protein_coding	1207	same	2549_ID	chr12	131462107	131463313	1207	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	24
7444	ENST00000547547.1_3	ENST00000552032.7_3	chr12	70340322	70340861	AC078922.1	-	lncRNA	chr12	70219006	70352877	MYRFL	+	protein_coding	539	opposite	2605_ID	chr12	70340323	70340861	539	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	24
7765	ENST00000558699.1_3	ENST00000441037.7_4	chr15	87173496	87174367	AC012229.1	-	lncRNA	chr15	86623203	87572283	AGBL1	+	protein_coding	871	opposite	1351_ID	chr15	87173497	87174367	871	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	24
7851	ENST00000560696.1_1	ENST00000441037.7_4	chr15	87476110	87489562	AC016987.2	+	lncRNA	chr15	86623203	87572283	AGBL1	+	protein_coding	13452	same	1577_ID	chr15	87476111	87489562	13452	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	24
8125	ENST00000566287.1_1	ENST00000448525.5_3	chr16	1495343	1496520	AL031600.3	+	lncRNA	chr16	1494936	1525085	CLCN7	-	protein_coding	1177	opposite	4529_ID	chr16	1495344	1496520	1177	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	24	24
8148	ENST00000566878.2_4	ENST00000441037.7_4	chr15	86840063	86860194	AGBL1-AS1	-	lncRNA	chr15	86623203	87572283	AGBL1	+	protein_coding	21525	opposite	4412_ID	chr15	86840064	86860194	20131	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	24
8274	ENST00000569644.1_3	ENST00000617277.4_3	chr1	179512335	179518057	AL160286.3	-	lncRNA	chr1	179334854	179523868	AXDND1	+	protein_coding	5722	opposite	5138_ID	chr1	179512336	179518057	5722	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	24
8377	ENST00000574290.1_3	ENST00000268989.8_3	chr17	2278354	2282600	AC006435.2	-	lncRNA	chr17	2240794	2284348	SGSM2	+	protein_coding	4246	opposite	460_ID	chr17	2278355	2282600	4246	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	24
8506	ENST00000577559.1	ENST00000663148.1_3	chr3	197020748	197020819	MIR4797	-	miRNA	chr3	196769468	197025938	DLG1	-	protein_coding	71	same	8781_ID	chr3	197020749	197020819	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	24
8597	ENST00000577977.1	ENST00000613246.4_1	chr11	48118333	48118410	MIR3161	+	miRNA	chr11	48002109	48192393	PTPRJ	+	protein_coding	77	same	8282_ID	chr11	48118334	48118410	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
8674	ENST00000578505.1	ENST00000264852.9_5	chr3	113313722	113313789	MIR4446	+	miRNA	chr3	113251401	113348422	SIDT1	+	protein_coding	67	same	8546_ID	chr3	113313723	113313789	67	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	24
8867	ENST00000579646.1	ENST00000295220.10_1	chr2	120328475	120328576	AC013275.1	+	miRNA	chr2	120302007	120414237	CFAP221	+	nonsense_mediated_decay	101	same	1430_ID	chr2	120328476	120328576	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	24
8876	ENST00000579691.1	ENST00000438447.2_2	chr5	31880140	31880190	AC025458.1	-	miRNA	chr5	31639237	32111038	PDZD2	+	protein_coding	50	opposite	2090_ID	chr5	31880141	31880190	50	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
8909	ENST00000579874.1	ENST00000613205.4_5	chr11	71783273	71783348	MIR3165	-	miRNA	chr11	71713910	71791739	NUMA1	-	protein_coding	75	same	8288_ID	chr11	71783274	71783348	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
8956	ENST00000580165.1	ENST00000524871.6_3	chr11	99295668	99295736	AP003558.1	-	miRNA	chr11	98891678	100229616	CNTN5	+	protein_coding	68	opposite	6267_ID	chr11	99295669	99295736	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
8969	ENST00000580253.1_3	ENST00000424789.6_2	chr17	61382622	61390882	AC005828.2	-	lncRNA	chr17	61086916	61505060	TANC2	+	protein_coding	8260	opposite	364_ID	chr17	61382623	61390882	8260	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	24
9022	ENST00000580539.1	ENST00000393066.7_3	chr17	57136586	57136850	RN7SL716P	+	misc_RNA	chr17	57060011	57184282	TRIM37	-	protein_coding	264	opposite	10379_ID	chr17	57136587	57136850	264	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	24
9116	ENST00000580964.1	ENST00000280562.9_3	chr12	123495213	123495275	MIR4304	-	miRNA	chr12	123468026	123595042	PITPNM2	-	protein_coding	62	same	8497_ID	chr12	123495214	123495275	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	24
9222	ENST00000581683.1	ENST00000337273.9_1	chr5	72174417	72174490	MIR4804	+	miRNA	chr5	72112138	72212560	TNPO1	+	protein_coding	73	same	8787_ID	chr5	72174418	72174490	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	24
9290	ENST00000581978.1	ENST00000373700.9_4	chr10	69767476	69767774	RN7SL220P	-	misc_RNA	chr10	69681661	69835040	HERC4	-	protein_coding	298	same	10030_ID	chr10	69767477	69767774	298	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	24
9306	ENST00000582091.1	ENST00000438447.2_2	chr5	31936207	31936265	MIR4279	-	miRNA	chr5	31639237	32111038	PDZD2	+	protein_coding	58	opposite	8475_ID	chr5	31936208	31936265	58	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
9455	ENST00000582889.1_3	ENST00000424789.6_2	chr17	61194379	61208308	AC006270.1	-	lncRNA	chr17	61086916	61505060	TANC2	+	protein_coding	13929	opposite	448_ID	chr17	61194380	61208308	13929	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	24
9599	ENST00000583710.1	ENST00000611582.5_3	chr2	232227418	232227504	MIR4777	+	miRNA	chr2	232063344	232241559	ARMC9	+	protein_coding	86	same	8765_ID	chr2	232227419	232227504	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	25
9624	ENST00000583862.1	ENST00000321612.8_5	chr9	6542093	6542350	RN7SL25P	+	misc_RNA	chr9	6532466	6645729	GLDC	-	protein_coding	257	opposite	10060_ID	chr9	6542094	6542350	257	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	24
9654	ENST00000584034.1	ENST00000371037.9_2	chr1	67094122	67094200	MIR3117	+	miRNA	chr1	66999835	67216822	SGIP1	+	protein_coding	78	same	8236_ID	chr1	67094123	67094200	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
9746	ENST00000584510.1	ENST00000333486.4_4	chr3	49843569	49843678	MIR5193	-	miRNA	chr3	49842641	49851386	UBA7	-	protein_coding	109	same	8856_ID	chr3	49843570	49843678	109	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	22	24
9778	ENST00000584718.1	ENST00000330909.12_3	chr3	65926921	65927022	AC106827.2	+	miRNA	chr3	65339199	66023983	MAGI1	-	protein_coding	101	opposite	3657_ID	chr3	65926922	65927022	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
9948	ENST00000586764.1_5	ENST00000650571.1_2	chr17	41622343	41656988	ETV4	-	protein_coding	chr17	41561327	41668109	DHX8	+	nonsense_mediated_decay	51777	opposite	6939_ID	chr17	41622344	41656988	34645	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	24
9967	ENST00000587343.1_1	ENST00000455140.7_5	chr19	16551756	16554395	AC020917.2	+	lncRNA	chr19	16466057	16582781	EPS15L1	-	protein_coding	2639	opposite	1760_ID	chr19	16551757	16554395	2639	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	24
10005	ENST00000588604.1_3	ENST00000407086.8_4	chr17	59111996	59147483	AC005884.1	-	lncRNA	chr17	58755211	59470192	BCAS3	+	protein_coding	35487	opposite	375_ID	chr17	59111997	59147483	35487	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	24
10114	ENST00000592440.1_3	ENST00000264638.9_2	chr17	40835204	40851484	AC100793.3	-	lncRNA	chr17	40834548	40852011	CNTNAP1	+	protein_coding	16280	opposite	3417_ID	chr17	40835205	40851484	16280	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	24
10435	ENST00000602316.1_1	ENST00000330909.12_3	chr3	65344942	65345392	AC121493.1	-	lncRNA	chr3	65339199	66023983	MAGI1	-	protein_coding	450	same	3976_ID	chr3	65344943	65345392	450	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	24
10582	ENST00000604104.1_1	ENST00000437951.5_5	chr9	98268516	98269918	AL161729.1	+	lncRNA	chr9	98205265	98279247	PTCH1	-	protein_coding	1402	opposite	5165_ID	chr9	98268517	98269918	1402	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	24
10611	ENST00000604939.1_3	ENST00000358657.7_1	chr12	51815739	51818395	AC107031.1	-	lncRNA	chr12	51785100	51909547	SLC4A8	+	protein_coding	2656	opposite	3679_ID	chr12	51815740	51818395	2656	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	24
11031	ENST00000609756.1_1	ENST00000357447.7_5	chr10	13717645	13717990	AL157392.4	+	lncRNA	chr10	13685705	14372923	FRMD4A	-	protein_coding	345	opposite	5057_ID	chr10	13717646	13717990	345	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	24
11100	ENST00000610421.1_1	ENST00000262135.9_5	chr16	53662167	53662728	AC007497.1	-	lncRNA	chr16	53632064	53737801	RPGRIP1L	-	protein_coding	561	same	584_ID	chr16	53662168	53662728	561	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	24
11138	ENST00000611384.1_1	ENST00000262039.9_2	chr18	39632668	39632994	AC087683.2	+	lncRNA	chr18	39535198	39667794	PIK3C3	+	protein_coding	326	same	2842_ID	chr18	39632669	39632994	326	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	24
11223	ENST00000613522.1_3	ENST00000652720.1_1	chr20	5971588	5986467	MCM8-AS1	-	lncRNA	chr20	5931594	6020502	AL035461.3	+	protein_coding	14879	opposite	7930_ID	chr20	5971589	5986467	14879	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	24
11603	ENST00000622201.1_1	ENST00000361138.7_2	chr9	72925790	72927036	AL162390.1	+	lncRNA	chr9	72873893	72969789	SMC5	+	protein_coding	1246	same	5194_ID	chr9	72925791	72927036	1246	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	24
11611	ENST00000622310.1_1	ENST00000655556.1_1	chr16	76616452	76616995	AC108125.1	+	lncRNA	chr16	76311185	76707252	AC106741.1	+	nonsense_mediated_decay	543	same	3723_ID	chr16	76616453	76616995	543	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	25
11867	ENST00000636699.1_1	ENST00000377564.3	chr9	43685238	43822684	CNTNAP3C	+	protein_coding	chr9	43684901	43924049	CNTNAP3B	+	protein_coding	137446	same	6683_ID	chr9	43685239	43822684	137446	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	24
12043	ENST00000648141.1_1	ENST00000676553.1_1	chr2	61754474	61756295	AC016727.3	+	lncRNA	chr2	61704823	61765876	XPO1	-	protein_coding	1821	opposite	1557_ID	chr2	61754475	61756295	1821	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
12082	ENST00000648603.1_4	ENST00000559000.6_4	chr15	57087657	57210583	AC090517.5	-	lncRNA	chr15	56944685	57210769	AC090517.4	-	protein_coding	123040	same	2904_ID	chr15	57087658	57210583	122926	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	24
12302	ENST00000652912.1_3	ENST00000498697.3_6	chr2	203002292	203014350	AC079354.2	-	lncRNA	chr2	202937977	203069911	KIAA2012	+	protein_coding	12058	opposite	2654_ID	chr2	203002293	203014350	12058	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	24
12543	ENST00000658263.1_2	ENST00000358470.8_3	chr2	191910183	191930071	AC067945.3	+	lncRNA	chr2	191894301	192016316	STAT4	-	protein_coding	19888	opposite	2382_ID	chr2	191910184	191930071	19888	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	24
12606	ENST00000659342.1_3	ENST00000648804.1_1	chr11	22031947	22191547	AC116534.1	-	lncRNA	chr11	21821479	22304890	ANO5	+	processed_transcript	159600	opposite	3912_ID	chr11	22031948	22191547	159600	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	24
12669	ENST00000660796.1_3	ENST00000360359.5_4	chr6	35008892	35025792	AL591002.1	-	lncRNA	chr6	34857031	35059183	ANKS1A	+	protein_coding	16900	opposite	5786_ID	chr6	35008893	35025792	16900	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	24
12974	ENST00000667304.1_3	ENST00000257209.8_2	chr18	33997017	34004148	AC055840.1	-	lncRNA	chr18	33877676	34360018	FHOD3	+	protein_coding	7131	opposite	2339_ID	chr18	33997018	34004148	7131	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	24
13010	ENST00000668002.1_1	ENST00000418658.6_2	chr3	2177440	2183672	AC087427.1	+	lncRNA	chr3	2140549	3099643	CNTN4	+	protein_coding	6232	same	2816_ID	chr3	2177441	2183672	6232	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
13150	ENST00000671241.1_1	ENST00000545145.6_3	chr12	114301206	114309402	AC009731.1	+	lncRNA	chr12	114254546	114404111	RBM19	-	protein_coding	8196	opposite	991_ID	chr12	114301207	114309402	8196	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	24
32721	ENST00000411417.1_1	ENST00000326637.8_2	chr1	74934196	74935227	AC105271.1	+	lncRNA	chr1	74701070	75010112	TNNI3K	+	protein_coding	1349	same	3611_ID	chr1	74934197	74935227	1031	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	24
47261	ENST00000451617.1_1	ENST00000357447.7_5	chr10	14116282	14129604	AL157896.1	+	lncRNA	chr10	13685705	14372923	FRMD4A	-	protein_coding	13322	opposite	5085_ID	chr10	14116283	14129604	13322	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
54291	ENST00000478366.1_1	ENST00000468472.1_3	chr3	52857950	52859330	ITIH4-AS1	+	lncRNA	chr3	52847297	52869745	AC006254.1	-	nonsense_mediated_decay	1380	opposite	7380_ID	chr3	52857951	52859330	1380	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	12	24
73581	ENST00000543604.1_3	ENST00000333957.8_4	chr12	22613452	22616848	AC053513.2	-	lncRNA	chr12	22601516	22697480	C2CD5	-	protein_coding	3396	same	2326_ID	chr12	22613453	22616848	3396	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	24
24261	ENST00000391139.1	ENST00000659103.1_1	chr9	42378940	42379047	RNU6-1269P	+	snRNA	chr9	42368419	42474223	BX664727.3	+	lncRNA	107	same	10963_ID	chr9	42378941	42379047	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	24
105	ENST00000249363.4_4	ENST00000354725.8_2	chr7	127667123	127671490	LRRC4	-	protein_coding	chr7	127292247	127732645	SND1	+	protein_coding	5037	opposite	7861_ID	chr7	127667124	127671490	4367	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	23
147	ENST00000258400.4_4	ENST00000678241.1_1	chr2	231972943	231989756	HTR2B	-	protein_coding	chr2	231921562	232037830	PSMD1	+	nonsense_mediated_decay	16813	opposite	7315_ID	chr2	231972944	231989756	16813	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	23
171	ENST00000263921.8_6	ENST00000507166.5_1	chr4	54875955	54930772	CHIC2	-	protein_coding	chr4	54244005	55161439	AC058822.1	+	protein_coding	54817	opposite	6637_ID	chr4	54875956	54930772	54817	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	23
172	ENST00000263925.8_4	ENST00000507166.5_1	chr4	54325467	54457653	LNX1	-	protein_coding	chr4	54244005	55161439	AC058822.1	+	protein_coding	242105	opposite	7843_ID	chr4	54325468	54457653	132186	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	23
492	ENST00000323319.7_2	ENST00000403733.8_4	chr4	184239252	184241429	CLDN22	-	protein_coding	chr4	184020409	184241930	WWC2	+	protein_coding	2177	opposite	6662_ID	chr4	184239253	184241429	2177	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	23	23
538	ENST00000329015.2_3	ENST00000400424.6_2	chr21	43522243	43528644	UMODL1-AS1	-	lncRNA	chr21	43483067	43563563	UMODL1	+	protein_coding	6401	opposite	12845_ID	chr21	43522244	43528644	6401	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	23
574	ENST00000333130.3_1	ENST00000509549.5_3	chr22	19419424	19423598	MRPL40	+	protein_coding	chr22	19338890	19435214	C22orf39	-	nonsense_mediated_decay	4174	opposite	9163_ID	chr22	19419425	19423598	4174	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	23
753	ENST00000362117.1	ENST00000357388.8_2	chr3	160122532	160122613	MIR16-2	+	miRNA	chr3	160117437	160152741	SMC4	+	protein_coding	81	same	8117_ID	chr3	160122533	160122613	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	23
945	ENST00000363177.1	ENST00000298815.13_3	chr11	100710360	100710677	RN7SKP115	+	misc_RNA	chr11	100558018	100864672	ARHGAP42	+	protein_coding	317	same	9768_ID	chr11	100710361	100710677	317	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	23
953	ENST00000363221.1	ENST00000447266.7_3	chr6	76364685	76365015	RN7SKP163	-	misc_RNA	chr6	76311595	76427997	SENP6	+	protein_coding	330	opposite	9798_ID	chr6	76364686	76365015	330	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	23
959	ENST00000363235.1	ENST00000646918.1_3	chr12	15824640	15824744	RNU6-251P	-	snRNA	chr12	15773114	16035226	EPS8	-	protein_coding	104	same	11100_ID	chr12	15824641	15824744	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	23
1042	ENST00000363667.1	ENST00000375300.6_4	chr11	116886612	116886708	RNY4P6	+	misc_RNA	chr11	116714130	116969144	SIK3	-	protein_coding	96	opposite	11863_ID	chr11	116886613	116886708	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
1165	ENST00000364328.1	ENST00000347140.7_4	chr12	57809078	57809186	RNU6-879P	+	snRNA	chr12	57647546	57824788	R3HDM2	-	protein_coding	108	opposite	11578_ID	chr12	57809079	57809186	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
1217	ENST00000364588.1	ENST00000232458.9_3	chr3	172514218	172514348	RNU4-4P	-	snRNA	chr3	172468471	172539264	ECT2	+	protein_coding	130	opposite	10688_ID	chr3	172514219	172514348	130	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	23
1236	ENST00000364704.1	ENST00000678241.1_1	chr2	231998175	231998344	RNU1-93P	+	snRNA	chr2	231921562	232037830	PSMD1	+	nonsense_mediated_decay	169	same	10611_ID	chr2	231998176	231998344	169	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	23
1249	ENST00000364753.1	ENST00000504830.6_7	chr5	33888160	33888267	RNU6-923P	-	snRNA	chr5	33523639	33892095	ADAMTS12	-	protein_coding	107	same	11613_ID	chr5	33888161	33888267	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
1386	ENST00000365574.1	ENST00000447098.6_3	chr1	45285554	45285669	RNU5E-6P	-	snRNA	chr1	45285515	45308616	PTCH2	-	protein_coding	115	same	10749_ID	chr1	45285555	45285669	115	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	23	23
1560	ENST00000377320.3_3	ENST00000377346.9_2	chr1	9712667	9714644	PIK3CD-AS1	-	lncRNA	chr1	9711788	9789172	PIK3CD	+	protein_coding	1977	opposite	9558_ID	chr1	9712668	9714644	1977	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
1683	ENST00000383954.1	ENST00000678161.1_1	chr6	166131722	166131826	RNU6-730P	-	snRNA	chr6	165740802	166401521	PDE10A	-	nonsense_mediated_decay	104	same	11459_ID	chr6	166131723	166131826	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	23
1752	ENST00000384132.1	ENST00000651222.2_3	chr17	17073396	17073503	RNU6-767P	+	snRNA	chr17	16945770	17095957	MPRIP	+	protein_coding	107	same	11487_ID	chr17	17073397	17073503	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	23
1760	ENST00000384160.1	ENST00000482491.5_3	chr1	224493081	224493185	RNU6-1008P	+	snRNA	chr1	224415038	224517891	NVL	-	protein_coding	104	opposite	10761_ID	chr1	224493082	224493185	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	23
1847	ENST00000384434.1	ENST00000637182.1_3	chr3	14572488	14572595	RNU6-905P	-	snRNA	chr3	14534713	14597582	GRIP2	-	protein_coding	107	same	11601_ID	chr3	14572489	14572595	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
1885	ENST00000384530.1	ENST00000265171.10_2	chr4	110913480	110913587	RNU6-35P	+	snRNA	chr4	110834038	110934922	EGF	+	protein_coding	107	same	11181_ID	chr4	110913481	110913587	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	23
1910	ENST00000384588.1	ENST00000361727.8_3	chr7	147528861	147528969	RNU6-1184P	+	snRNA	chr7	145813892	148118090	CNTNAP2	+	protein_coding	108	same	10886_ID	chr7	147528862	147528969	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	23
1943	ENST00000384671.1	ENST00000358470.8_3	chr2	191986675	191986782	RNU6-959P	+	snRNA	chr2	191894301	192016316	STAT4	-	protein_coding	107	opposite	11636_ID	chr2	191986676	191986782	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	23
2026	ENST00000384856.1	ENST00000354725.8_2	chr7	127721912	127722012	MIR593	+	miRNA	chr7	127292247	127732645	SND1	+	protein_coding	100	same	8996_ID	chr7	127721913	127722012	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	23
2125	ENST00000385032.1	ENST00000219905.11_3	chr15	41983782	41983876	MIR626	+	miRNA	chr15	41952609	42062141	MGA	+	protein_coding	94	same	9029_ID	chr15	41983783	41983876	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	23
2135	ENST00000385045.1	ENST00000357388.8_2	chr3	160122375	160122473	MIR15B	+	miRNA	chr3	160117437	160152741	SMC4	+	protein_coding	98	same	8113_ID	chr3	160122376	160122473	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	23
2227	ENST00000385253.1	ENST00000265175.5_3	chr4	110409853	110409951	MIR576	+	miRNA	chr4	110354970	110462052	SEC24B	+	protein_coding	98	same	8979_ID	chr4	110409854	110409951	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	23
2248	ENST00000385282.1	ENST00000359154.7_2	chr16	69966983	69967083	MIR140	+	miRNA	chr16	69796234	69975642	WWP2	+	protein_coding	100	same	8094_ID	chr16	69966984	69967083	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	23
2260	ENST00000386037.1	ENST00000254630.12_3	chr2	86362992	86363129	SNORD94	+	snoRNA	chr2	86333357	86369280	PTCD3	+	protein_coding	137	same	12465_ID	chr2	86362993	86363129	137	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	23
2292	ENST00000390181.1	ENST00000407086.8_4	chr17	58888317	58888413	AC079005.1	+	miRNA	chr17	58755211	59470192	BCAS3	+	protein_coding	96	same	2615_ID	chr17	58888318	58888413	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	23
2338	ENST00000390760.1	ENST00000280481.9_2	chr13	39364780	39364891	AL590007.1	+	miRNA	chr13	39261213	39461268	FREM2	+	protein_coding	111	same	5747_ID	chr13	39364781	39364891	111	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	23
2404	ENST00000391066.1	ENST00000388914.7_3	chr4	77277762	77277868	RNU6-1000P	-	snRNA	chr4	77234154	77328458	CCDC158	-	protein_coding	106	same	10756_ID	chr4	77277763	77277868	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	23
2704	ENST00000408255.1	ENST00000630771.2_1	chr10	70514928	70514995	SNORD98	+	snoRNA	chr10	70480900	70552132	CCAR1	+	protein_coding	67	same	12470_ID	chr10	70514929	70514995	67	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	23
2706	ENST00000408257.1	ENST00000630771.2_1	chr10	70519074	70519171	MIR1254-1	+	miRNA	chr10	70480900	70552132	CCAR1	+	protein_coding	97	same	8005_ID	chr10	70519075	70519171	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	23
2720	ENST00000408292.1	ENST00000507166.5_1	chr4	54969746	54969823	AC110298.1	-	miRNA	chr4	54244005	55161439	AC058822.1	+	protein_coding	77	opposite	3787_ID	chr4	54969747	54969823	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	23
2796	ENST00000408479.1	ENST00000482491.5_3	chr1	224444705	224444843	MIR320B2	-	miRNA	chr1	224415038	224517891	NVL	-	protein_coding	138	same	8313_ID	chr1	224444706	224444843	138	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	23
2811	ENST00000408515.1	ENST00000361727.8_3	chr7	147075108	147075213	MIR548F4	-	miRNA	chr7	145813892	148118090	CNTNAP2	+	protein_coding	105	opposite	8897_ID	chr7	147075109	147075213	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	23
2901	ENST00000408718.2	ENST00000341502.9_4	chr14	39853281	39853350	AL157791.1	-	miRNA	chr14	39736449	39857717	MIA2	+	protein_coding	69	opposite	5069_ID	chr14	39853282	39853350	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	23
2954	ENST00000408839.1	ENST00000361727.8_3	chr7	146593688	146593785	AC084872.1	-	miRNA	chr7	145813892	148118090	CNTNAP2	+	protein_coding	97	opposite	2773_ID	chr7	146593689	146593785	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	23
3051	ENST00000410350.1	ENST00000373023.6_3	chr1	38350694	38350789	RNU6-584P	+	snRNA	chr1	38326368	38412729	INPP5B	-	protein_coding	95	opposite	11355_ID	chr1	38350695	38350789	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	23
3317	ENST00000412242.1_3	ENST00000452825.7_4	chrX	53241589	53243861	KDM5C-IT1	-	lncRNA	chrX	53220502	53254604	KDM5C	-	protein_coding	2272	same	7433_ID	chrX	53241590	53243861	2272	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	23
3368	ENST00000413818.2_1	ENST00000355972.8_3	chr20	45981304	45983377	AL031666.1	+	lncRNA	chr20	45837858	45985633	ZMYND8	-	protein_coding	40109	opposite	4538_ID	chr20	45981305	45983377	2073	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	23
3442	ENST00000415330.2_3	ENST00000377346.9_2	chr1	9732483	9747613	PIK3CD-AS2	-	lncRNA	chr1	9711788	9789172	PIK3CD	+	protein_coding	15130	opposite	9559_ID	chr1	9732484	9747613	15130	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
3471	ENST00000416076.1_1	ENST00000623461.3_1	chr10	75764894	75787673	AL596247.1	+	lncRNA	chr10	75754950	75879918	VCL	+	processed_transcript	22779	same	5826_ID	chr10	75764895	75787673	22779	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	23
3576	ENST00000419100.1_1	ENST00000354638.8_4	chr15	28020766	28021944	AC090696.1	+	lncRNA	chr15	28000020	28344461	OCA2	-	protein_coding	1178	opposite	2929_ID	chr15	28020767	28021944	1178	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	23
3622	ENST00000420245.1_3	ENST00000389297.8_3	chr7	89895347	89899530	AC002064.2	-	lncRNA	chr7	89874487	89940377	CFAP69	+	protein_coding	4183	opposite	32_ID	chr7	89895348	89899530	4183	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	23
3735	ENST00000422980.1_1	ENST00000370192.8_3	chr1	97561478	97788511	DPYD-AS1	+	lncRNA	chr1	97543298	98386590	DPYD	-	protein_coding	227033	opposite	6844_ID	chr1	97561479	97788511	227033	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	23
3897	ENST00000428367.2_3	ENST00000651222.2_3	chr17	16979351	16981066	MPRIP-AS1	-	lncRNA	chr17	16945770	17095957	MPRIP	+	protein_coding	1715	opposite	9156_ID	chr17	16979352	16981066	1715	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	23
4095	ENST00000433606.1_1	ENST00000265459.11_5	chr11	64413870	64427153	NRXN2-AS1	+	lncRNA	chr11	64373645	64490669	NRXN2	-	protein_coding	13283	opposite	9308_ID	chr11	64413871	64427153	13283	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	23
4131	ENST00000434887.1_3	ENST00000361727.8_3	chr7	146778025	146794701	CNTNAP2-AS1	-	lncRNA	chr7	145813892	148118090	CNTNAP2	+	protein_coding	16676	opposite	6682_ID	chr7	146778026	146794701	16676	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	23
4168	ENST00000435810.1_1	ENST00000678161.1_1	chr6	166167676	166189268	AL590302.2	+	lncRNA	chr6	165740802	166401521	PDE10A	-	nonsense_mediated_decay	21592	opposite	5760_ID	chr6	166167677	166189268	21592	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	23
4252	ENST00000438266.1_3	ENST00000320785.10_2	chr17	4922508	4923388	KIF1C-AS1	-	lncRNA	chr17	4901244	4931696	KIF1C	+	protein_coding	880	opposite	7441_ID	chr17	4922509	4923388	880	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	23
4564	ENST00000447111.1_3	ENST00000498697.3_6	chr2	203043382	203044114	AC079354.1	-	lncRNA	chr2	202937977	203069911	KIAA2012	+	protein_coding	732	opposite	2653_ID	chr2	203043383	203044114	732	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	23
4599	ENST00000448131.1_1	ENST00000361727.8_3	chr7	147368802	147370235	AC005518.1	+	lncRNA	chr7	145813892	148118090	CNTNAP2	+	protein_coding	1433	same	300_ID	chr7	147368803	147370235	1433	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	23
4628	ENST00000448887.1_3	ENST00000280481.9_2	chr13	39395934	39401707	FREM2-AS1	-	lncRNA	chr13	39261213	39461268	FREM2	+	protein_coding	5773	opposite	7077_ID	chr13	39395935	39401707	5773	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	23
4750	ENST00000452313.1	ENST00000635887.1_4	chr16	28467692	28481868	NPIPB7	-	protein_coding	chr16	28467691	28503362	AC138894.1	-	nonsense_mediated_decay	14176	same	9290_ID	chr16	28467693	28481868	14176	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	18	23
4756	ENST00000452397.1_3	ENST00000405015.7_2	chr2	63053198	63085573	AC092567.1	-	lncRNA	chr2	62900985	63272732	EHBP1	+	protein_coding	32375	opposite	3102_ID	chr2	63053199	63085573	32375	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	23
4812	ENST00000454005.1_3	ENST00000334062.8_4	chr13	114873043	114874295	RASA3-IT1	-	lncRNA	chr13	114747193	114898098	RASA3	-	protein_coding	1252	same	9704_ID	chr13	114873044	114874295	1252	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
4839	ENST00000454832.1	ENST00000375300.6_4	chr11	116756761	116761437	SIK3-IT1	-	sense_intronic	chr11	116714130	116969144	SIK3	-	protein_coding	4676	same	12064_ID	chr11	116756762	116761437	4676	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	23
5211	ENST00000464534.2	ENST00000265175.5_3	chr4	110371930	110372224	RN7SL55P	-	misc_RNA	chr4	110354970	110462052	SEC24B	+	protein_coding	294	opposite	10270_ID	chr4	110371931	110372224	294	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
5277	ENST00000469290.2	ENST00000361727.8_3	chr7	147637095	147637391	RN7SL456P	+	misc_RNA	chr7	145813892	148118090	CNTNAP2	+	protein_coding	296	same	10197_ID	chr7	147637096	147637391	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	23
5339	ENST00000472779.2	ENST00000407086.8_4	chr17	58773673	58773964	RN7SL606P	+	misc_RNA	chr17	58755211	59470192	BCAS3	+	protein_coding	291	same	10301_ID	chr17	58773674	58773964	291	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	23
5348	ENST00000473320.2	ENST00000455140.7_5	chr19	16509476	16509770	RN7SL844P	-	misc_RNA	chr19	16466057	16582781	EPS15L1	-	protein_coding	294	same	10474_ID	chr19	16509477	16509770	294	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	23
5383	ENST00000475566.2	ENST00000407086.8_4	chr17	58977251	58977544	RN7SL448P	+	misc_RNA	chr17	58755211	59470192	BCAS3	+	protein_coding	293	same	10189_ID	chr17	58977252	58977544	293	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	23
5498	ENST00000484033.2	ENST00000372195.5_6	chr9	134600555	134600854	RN7SL328P	-	misc_RNA	chr9	134452156	134615461	RAPGEF1	-	protein_coding	299	same	10108_ID	chr9	134600556	134600854	299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
5510	ENST00000484721.2_3	ENST00000460393.6_3	chr3	154876158	154901074	MME-AS1	-	lncRNA	chr3	154797460	154901493	MME	+	protein_coding	24916	opposite	9148_ID	chr3	154876159	154901074	24916	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	17	23
5703	ENST00000498361.2	ENST00000651222.2_3	chr17	17081728	17082020	RN7SL775P	+	misc_RNA	chr17	16945770	17095957	MPRIP	+	protein_coding	292	same	10424_ID	chr17	17081729	17082020	292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	23
5783	ENST00000503307.2_5	ENST00000515403.5_4	chr5	175585613	175595041	AC139491.8	-	lncRNA	chr5	175570087	175612158	AC139491.2	-	lncRNA	9758	same	4206_ID	chr5	175585614	175595041	9428	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	23
5929	ENST00000507770.1_1	ENST00000286364.9_4	chr3	141243974	141244963	RASA2-IT1	+	lncRNA	chr3	141205868	141334186	RASA2	+	protein_coding	989	same	9703_ID	chr3	141243975	141244963	989	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	23
5931	ENST00000507839.1_1	ENST00000507166.5_1	chr4	54965689	54968095	GSX2	+	processed_transcript	chr4	54244005	55161439	AC058822.1	+	protein_coding	2976	same	7197_ID	chr4	54965690	54968095	2406	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	23
5944	ENST00000508081.1_3	ENST00000273859.8_2	chr4	47558747	47562276	AC107398.2	-	lncRNA	chr4	47487291	47595503	ATP10D	+	protein_coding	3529	opposite	3693_ID	chr4	47558748	47562276	3529	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	23
5945	ENST00000508112.1_1	ENST00000507166.5_1	chr4	54525374	54603323	AC124017.1	+	lncRNA	chr4	54244005	55161439	AC058822.1	+	protein_coding	77949	same	3996_ID	chr4	54525375	54603323	77949	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	23
5995	ENST00000509974.1_1	ENST00000507166.5_1	chr4	54459122	54470214	LNX1-AS2	+	lncRNA	chr4	54244005	55161439	AC058822.1	+	protein_coding	11092	same	7846_ID	chr4	54459123	54470214	11092	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	23
6022	ENST00000510905.1_1	ENST00000264868.9_5	chr4	25771887	25775199	AC092436.3	+	lncRNA	chr4	25749054	25865217	SEL1L3	-	protein_coding	3312	opposite	3094_ID	chr4	25771888	25775199	3312	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	23
6032	ENST00000511310.1_1	ENST00000382496.10_4	chr5	9363386	9422593	AC091906.1	+	lncRNA	chr5	9035144	9546187	SEMA5A	-	protein_coding	59207	opposite	3020_ID	chr5	9363387	9422593	59207	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	23
6057	ENST00000511846.1_3	ENST00000403733.8_4	chr4	184154780	184161787	WWC2-AS1	-	lncRNA	chr4	184020409	184241930	WWC2	+	protein_coding	7007	opposite	12916_ID	chr4	184154781	184161787	7007	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	23
6066	ENST00000511989.5_1	ENST00000507166.5_1	chr4	54368030	54415745	LNX1-AS1	+	lncRNA	chr4	54244005	55161439	AC058822.1	+	protein_coding	53179	same	7845_ID	chr4	54368031	54415745	47715	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	23
6079	ENST00000512384.1_1	ENST00000273450.7_3	chr3	125822482	125826912	ALDH1L1-AS1	+	lncRNA	chr3	125822411	125900029	ALDH1L1	-	protein_coding	4430	opposite	5925_ID	chr3	125822483	125826912	4430	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	21	23
6081	ENST00000512405.1_1	ENST00000507166.5_1	chr4	54766037	54783002	AC105384.1	+	lncRNA	chr4	54244005	55161439	AC058822.1	+	protein_coding	16965	same	3615_ID	chr4	54766038	54783002	16965	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	23
6160	ENST00000514848.1_3	ENST00000274181.7_2	chr5	5142250	5176327	AC022424.1	-	lncRNA	chr5	5140442	5320417	ADAMTS16	+	protein_coding	34077	opposite	1860_ID	chr5	5142251	5176327	34077	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	23
6301	ENST00000516194.1	ENST00000417368.7_4	chr7	121721773	121721835	RNU7-154P	+	snRNA	chr7	121713602	121784303	AASS	-	protein_coding	62	opposite	11730_ID	chr7	121721774	121721835	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	23
6368	ENST00000516387.1	ENST00000678161.1_1	chr6	166355758	166355829	AL590482.1	-	miRNA	chr6	165740802	166401521	PDE10A	-	nonsense_mediated_decay	71	same	5771_ID	chr6	166355759	166355829	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
6417	ENST00000516529.1	ENST00000370859.7_3	chr1	76003699	76003804	RNU6-503P	-	snRNA	chr1	75667815	76076801	SLC44A5	-	protein_coding	105	same	11288_ID	chr1	76003700	76003804	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	23
6423	ENST00000516546.1	ENST00000039989.9_2	chr11	43456681	43456947	RN7SKP287	-	misc_RNA	chr11	43380469	43516481	TTC17	+	protein_coding	266	opposite	9879_ID	chr11	43456682	43456947	266	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	23
6448	ENST00000516607.1	ENST00000374518.6_2	chr10	43327894	43327998	RNU6-885P	-	snRNA	chr10	43278242	43330385	BMS1	+	protein_coding	104	opposite	11584_ID	chr10	43327895	43327998	104	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	23	23
6472	ENST00000516689.1	ENST00000447266.7_3	chr6	76353799	76353893	RNU6-1016P	+	snRNA	chr6	76311595	76427997	SENP6	+	protein_coding	94	same	10768_ID	chr6	76353800	76353893	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	23
6577	ENST00000516986.1	ENST00000280481.9_2	chr13	39353560	39353653	RNU6-56P	+	snRNA	chr13	39261213	39461268	FREM2	+	protein_coding	93	same	11343_ID	chr13	39353561	39353653	93	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	23
6635	ENST00000517135.1	ENST00000262903.9_4	chr6	105214696	105214801	RNU6-897P	+	snRNA	chr6	105175968	105307794	HACE1	-	protein_coding	105	opposite	11591_ID	chr6	105214697	105214801	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	23
6834	ENST00000521010.1_1	ENST00000297591.10_4	chr8	95545855	95546619	AC023632.5	+	lncRNA	chr8	95499916	95565697	VIRMA	-	protein_coding	764	opposite	1963_ID	chr8	95545856	95546619	764	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	23
7079	ENST00000529883.1_1	ENST00000534127.5_4	chr11	8714903	8718154	AC091053.1	+	lncRNA	chr11	8714897	8932498	DENND2B	-	protein_coding	3251	opposite	2970_ID	chr11	8714904	8718154	3251	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	21	23
7091	ENST00000530198.1_1	ENST00000361417.6_2	chr11	118507337	118508815	AP000941.1	+	lncRNA	chr11	118477154	118528741	PHLDB1	+	protein_coding	1478	same	6057_ID	chr11	118507338	118508815	1478	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	23
7110	ENST00000530837.1_1	ENST00000648804.1_1	chr11	22134993	22138547	AC107882.1	+	lncRNA	chr11	21821479	22304890	ANO5	+	processed_transcript	3554	same	3697_ID	chr11	22134994	22138547	3554	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	23
7116	ENST00000530963.1_3	ENST00000299492.9_3	chr11	7590096	7593277	AC107884.2	-	lncRNA	chr11	7535229	7674987	PPFIBP2	+	protein_coding	3181	opposite	3698_ID	chr11	7590097	7593277	3181	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	23
7236	ENST00000535976.1_1	ENST00000361654.8_6	chr12	122880152	122885404	CLIP1-AS1	+	lncRNA	chr12	122755978	122907135	CLIP1	-	protein_coding	5316	opposite	6664_ID	chr12	122880153	122885404	5252	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
7363	ENST00000544015.1_1	ENST00000646918.1_3	chr12	15933001	15935054	AC073651.1	+	lncRNA	chr12	15773114	16035226	EPS8	-	protein_coding	2053	opposite	2544_ID	chr12	15933002	15935054	2053	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	23
7521	ENST00000551125.1_1	ENST00000261745.9_4	chr12	112501712	112503559	AC073575.1	+	lncRNA	chr12	112464492	112546587	NAA25	-	protein_coding	1847	opposite	2534_ID	chr12	112501713	112503559	1847	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	23
7845	ENST00000560522.1_3	ENST00000559717.6_2	chr15	91463447	91464416	AC068831.3	-	lncRNA	chr15	91446531	91465809	MAN2A2	+	protein_coding	969	opposite	2451_ID	chr15	91463448	91464416	969	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	23	23
7975	ENST00000563223.1_3	ENST00000448525.5_3	chr16	1517673	1522685	AL031600.2	-	lncRNA	chr16	1494936	1525085	CLCN7	-	protein_coding	5012	same	4528_ID	chr16	1517674	1522685	5012	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
7998	ENST00000563610.1_1	ENST00000448525.5_3	chr16	1501760	1502654	AL031600.1	+	lncRNA	chr16	1494936	1525085	CLCN7	-	protein_coding	894	opposite	4527_ID	chr16	1501761	1502654	894	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	23
8298	ENST00000570309.1_1	ENST00000573882.5_4	chr17	78174471	78178870	AC087741.1	-	lncRNA	chr17	78143810	78183130	CARD14	+	protein_coding	5277	opposite	2846_ID	chr17	78174472	78178870	4399	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	23
8345	ENST00000572828.1_3	ENST00000409790.6_5	chr16	11160352	11164959	AC007014.1	-	lncRNA	chr16	11038420	11276043	CLEC16A	+	protein_coding	4607	opposite	495_ID	chr16	11160353	11164959	4607	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	23
8467	ENST00000577356.1	ENST00000298815.13_3	chr11	100665171	100665266	AC015600.1	+	miRNA	chr11	100558018	100864672	ARHGAP42	+	protein_coding	95	same	1468_ID	chr11	100665172	100665266	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	23
8671	ENST00000578482.1_1	ENST00000583648.6_2	chr17	45759782	45760049	AC015674.1	-	lncRNA	chr17	45726860	45762871	KPNB1	+	protein_coding	267	opposite	1469_ID	chr17	45759783	45760049	267	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	23	23
8981	ENST00000580329.1	ENST00000377564.3	chr9	43802780	43803039	RN7SL343P	-	misc_RNA	chr9	43684901	43924049	CNTNAP3B	+	protein_coding	259	opposite	10115_ID	chr9	43802781	43803039	259	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	23
9096	ENST00000580873.1_3	ENST00000321990.5_2	chr17	29161342	29190046	AC130324.2	-	lncRNA	chr17	29158983	29222887	ATAD5	+	protein_coding	28704	opposite	4057_ID	chr17	29161343	29190046	28704	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	23
9183	ENST00000581390.1	ENST00000412770.7_5	chr19	55745494	55745564	AC010327.1	+	miRNA	chr19	55741146	55770385	PPP6R1	-	protein_coding	70	opposite	1063_ID	chr19	55745495	55745564	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	23
9299	ENST00000582058.1	ENST00000355972.8_3	chr20	45936796	45937126	RN7SL243P	-	misc_RNA	chr20	45837858	45985633	ZMYND8	-	protein_coding	330	same	10051_ID	chr20	45936797	45937126	330	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	23
9491	ENST00000583107.1	ENST00000356082.9_4	chr1	209796788	209796855	MIR4260	-	miRNA	chr1	209788214	209825770	LAMB3	-	protein_coding	67	same	8461_ID	chr1	209796789	209796855	67	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	23
9519	ENST00000583250.1_3	ENST00000394835.7_5	chr17	28386356	28392695	AC104996.1	-	lncRNA	chr17	28268622	28435470	EFCAB5	+	protein_coding	53645	opposite	3582_ID	chr17	28386357	28392695	6339	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	23
9588	ENST00000583650.1	ENST00000652720.1_1	chr20	5982378	5982674	RN7SL498P	+	misc_RNA	chr20	5931594	6020502	AL035461.3	+	protein_coding	296	same	10228_ID	chr20	5982379	5982674	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	23
9611	ENST00000583759.1	ENST00000264930.10_8	chr5	1063010	1063089	MIR4635	-	miRNA	chr5	1050498	1112178	SLC12A7	-	protein_coding	79	same	8621_ID	chr5	1063011	1063089	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	23
9670	ENST00000584092.1	ENST00000375300.6_4	chr11	116886145	116886245	AP000936.2	-	miRNA	chr11	116714130	116969144	SIK3	-	protein_coding	100	same	6056_ID	chr11	116886146	116886245	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
9796	ENST00000584818.1	ENST00000261745.9_4	chr12	112475402	112475519	MIR3657	-	miRNA	chr12	112464492	112546587	NAA25	-	protein_coding	117	same	8366_ID	chr12	112475403	112475519	117	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	23
9900	ENST00000585495.1_1	ENST00000407086.8_4	chr17	59460761	59462041	AC005746.1	+	lncRNA	chr17	58755211	59470192	BCAS3	+	protein_coding	1896	same	350_ID	chr17	59460762	59462041	1280	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	23
10137	ENST00000593107.1_3	ENST00000407086.8_4	chr17	59147216	59147717	AC005884.2	-	lncRNA	chr17	58755211	59470192	BCAS3	+	protein_coding	501	opposite	376_ID	chr17	59147217	59147717	501	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	23
10212	ENST00000595906.2_1	ENST00000507166.5_1	chr4	54925763	54927377	AC110792.2	+	lncRNA	chr4	54244005	55161439	AC058822.1	+	protein_coding	1614	same	3799_ID	chr4	54925764	54927377	1614	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	23
10356	ENST00000599904.2_1	ENST00000355972.8_3	chr20	45947245	45949498	AL031666.2	+	lncRNA	chr20	45837858	45985633	ZMYND8	-	protein_coding	2253	opposite	4539_ID	chr20	45947246	45949498	2253	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	23
10601	ENST00000604650.1_1	ENST00000437951.5_5	chr9	98276326	98276802	AL161729.4	+	lncRNA	chr9	98205265	98279247	PTCH1	-	protein_coding	476	opposite	5168_ID	chr9	98276327	98276802	476	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
10642	ENST00000605700.1_1	ENST00000437951.5_5	chr9	98257205	98257661	AL161729.2	+	lncRNA	chr9	98205265	98279247	PTCH1	-	protein_coding	456	opposite	5166_ID	chr9	98257206	98257661	456	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	23
10760	ENST00000606930.1_1	ENST00000261800.5_3	chr5	150889013	150892330	AC011337.1	+	lncRNA	chr5	150883654	150948505	FAT2	-	protein_coding	3317	opposite	1191_ID	chr5	150889014	150892330	3317	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	23
10990	ENST00000609320.1_1	ENST00000355972.8_3	chr20	45976880	45977886	AL031666.3	-	lncRNA	chr20	45837858	45985633	ZMYND8	-	protein_coding	1006	same	4540_ID	chr20	45976881	45977886	1006	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	23
11040	ENST00000609843.1_1	ENST00000507166.5_1	chr4	54863581	54863879	AC110792.3	-	lncRNA	chr4	54244005	55161439	AC058822.1	+	protein_coding	298	opposite	3800_ID	chr4	54863582	54863879	298	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	23
11125	ENST00000611041.1_1	ENST00000268989.8_3	chr17	2269882	2270085	AC006435.3	-	lncRNA	chr17	2240794	2284348	SGSM2	+	protein_coding	203	opposite	461_ID	chr17	2269883	2270085	203	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	23
11275	ENST00000614751.1_1	ENST00000407086.8_4	chr17	59432123	59432516	AC005746.3	-	lncRNA	chr17	58755211	59470192	BCAS3	+	protein_coding	393	opposite	352_ID	chr17	59432124	59432516	393	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	23
11301	ENST00000615487.1_1	ENST00000381480.7_5	chr19	6469475	6470163	AC010503.4	+	lncRNA	chr19	6467217	6481798	DENND1C	-	protein_coding	688	opposite	1088_ID	chr19	6469476	6470163	688	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	23
11307	ENST00000615581.1_1	ENST00000409790.6_5	chr16	11150412	11150891	AC007014.2	+	lncRNA	chr16	11038420	11276043	CLEC16A	+	protein_coding	479	same	496_ID	chr16	11150413	11150891	479	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	23
11316	ENST00000615828.1_1	ENST00000551295.7_2	chr12	41372545	41373046	AC015540.1	+	lncRNA	chr12	41086240	41466217	CNTN1	+	protein_coding	501	same	1465_ID	chr12	41372546	41373046	501	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	23
11411	ENST00000617990.4_3	ENST00000622683.5_3	chr17	36606637	36608643	AC244153.1	-	lncRNA	chr17	36584707	36668621	ARHGAP23	+	protein_coding	2051	opposite	4288_ID	chr17	36606638	36608643	2006	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	23
11450	ENST00000619201.1_1	ENST00000652720.1_1	chr20	5981063	5981587	AL035461.2	+	lncRNA	chr20	5931594	6020502	AL035461.3	+	protein_coding	524	same	4610_ID	chr20	5981064	5981587	524	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	23
11594	ENST00000621974.1_1	ENST00000559000.6_4	chr15	57179304	57180417	AC010999.2	+	lncRNA	chr15	56944685	57210769	AC090517.4	-	protein_coding	1113	opposite	1173_ID	chr15	57179305	57180417	1113	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	23
11643	ENST00000623342.1_1	ENST00000354725.8_2	chr7	127637649	127640130	SND1-IT1	+	lncRNA	chr7	127292247	127732645	SND1	+	protein_coding	2481	same	12145_ID	chr7	127637650	127640130	2481	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	23
11748	ENST00000626933.1_2	ENST00000356396.8_3	chr21	47640257	47645278	AP001469.1	+	lncRNA	chr21	47608054	47648736	LSS	-	protein_coding	5096	opposite	6136_ID	chr21	47640258	47645278	5021	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	23
12342	ENST00000654085.1_3	ENST00000376279.7_1	chr13	100991235	101017213	AL353697.1	-	lncRNA	chr13	100741268	101182686	PCCA	+	protein_coding	25978	opposite	5254_ID	chr13	100991236	101017213	25978	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	23
12349	ENST00000654316.1_1	ENST00000507166.5_1	chr4	54931405	54944621	AC110792.4	+	lncRNA	chr4	54244005	55161439	AC058822.1	+	protein_coding	13216	same	3801_ID	chr4	54931406	54944621	13216	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	23
12523	ENST00000657928.1_1	ENST00000354179.8_3	chr5	176687340	176690910	AC146507.3	+	lncRNA	chr5	176560079	176727211	NSD1	+	protein_coding	3570	same	4241_ID	chr5	176687341	176690910	3570	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	23
12576	ENST00000658803.1_3	ENST00000308482.14_5	chr2	238637211	238639774	AC012076.1	-	lncRNA	chr2	238536229	238690286	LRRFIP1	+	protein_coding	2563	opposite	1329_ID	chr2	238637212	238639774	2563	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	23
12776	ENST00000663085.1_1	ENST00000649792.2_4	chr11	9110829	9112003	AC079296.2	+	lncRNA	chr11	9041022	9113146	SCUBE2	-	protein_coding	1174	opposite	2635_ID	chr11	9110830	9112003	1174	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	23
12961	ENST00000666957.1_3	ENST00000407086.8_4	chr17	59196455	59213330	AC005856.1	-	lncRNA	chr17	58755211	59470192	BCAS3	+	protein_coding	16875	opposite	374_ID	chr17	59196456	59213330	16875	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	23
12964	ENST00000667071.1_3	ENST00000409790.6_5	chr16	11249154	11256675	AC007220.2	-	lncRNA	chr16	11038420	11276043	CLEC16A	+	protein_coding	7521	opposite	528_ID	chr16	11249155	11256675	7521	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	23
12997	ENST00000667791.1_3	ENST00000431078.1_1	chr2	125452818	125454107	AC019159.2	-	lncRNA	chr2	124782863	125672864	CNTNAP5	+	protein_coding	1289	opposite	1693_ID	chr2	125452819	125454107	1289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	23
13103	ENST00000670033.1_4	ENST00000678161.1_1	chr6	166186543	166188709	AL590302.1	-	lncRNA	chr6	165740802	166401521	PDE10A	-	nonsense_mediated_decay	2166	same	5758_ID	chr6	166186544	166188709	2166	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	23
13200	ENST00000674552.1_1	ENST00000485713.5_2	chr7	150759014	150759065	AC010973.3	+	protein_coding	chr7	150755298	150773613	SLC4A2	+	protein_coding	51	same	1165_ID	chr7	150759015	150759065	51	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	2	23
27810	ENST00000294117.6_2	ENST00000403734.2_3	chr11	62475147	62476673	GNG3	+	protein_coding	chr11	62457746	62494856	HNRNPUL2-BSCL2	-	nonsense_mediated_decay	1526	opposite	7142_ID	chr11	62475148	62476673	1526	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	23
26271	ENST00000402221.4_1	ENST00000651235.1_3	chr7	1878221	1889567	AC104129.1	+	lncRNA	chr7	1855439	2281850	AC069288.1	-	nonsense_mediated_decay	11346	opposite	3513_ID	chr7	1878222	1889567	11346	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	23
40031	ENST00000430920.1_1	ENST00000348066.8_8	chr17	4876145	4877976	AC004771.1	+	lncRNA	chr17	4871291	4890970	CAMTA2	-	protein_coding	1831	opposite	163_ID	chr17	4876146	4877976	1831	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	23
52081	ENST00000463821.2	ENST00000509549.5_3	chr22	19353288	19353565	RN7SL168P	+	misc_RNA	chr22	19338890	19435214	C22orf39	-	nonsense_mediated_decay	277	opposite	9989_ID	chr22	19353289	19353565	277	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	23
65871	ENST00000517005.1	ENST00000611870.5_3	chr16	76321526	76321636	RN7SKP233	+	misc_RNA	chr16	76311298	76594654	CNTNAP4	+	protein_coding	110	same	9840_ID	chr16	76321527	76321636	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	24
90891	ENST00000580817.1	ENST00000651235.1_3	chr7	1883815	1883889	MIR4655	-	miRNA	chr7	1855439	2281850	AC069288.1	-	nonsense_mediated_decay	74	same	8644_ID	chr7	1883816	1883889	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	23	23
100831	ENST00000591103.1_2	ENST00000319432.9_3	chr2	118756320	118757056	AC009303.3	+	lncRNA	chr2	118673053	118771709	CCDC93	-	protein_coding	736	opposite	943_ID	chr2	118756321	118757056	736	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	23
112941	ENST00000614966.1_1	ENST00000559000.6_4	chr15	57022129	57022809	AC090517.2	-	lncRNA	chr15	56944685	57210769	AC090517.4	-	protein_coding	680	same	2903_ID	chr15	57022130	57022809	680	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	23
370	ENST00000307548.2_1	ENST00000601538.5_3	chr11	70708894	70711220	SHANK2-AS3	+	lncRNA	chr11	70315539	70935808	SHANK2	-	protein_coding	2326	opposite	12060_ID	chr11	70708895	70711220	2326	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	22
382	ENST00000309602.5_5	ENST00000529047.6_4	chr11	66624534	66627946	LRFN4	+	protein_coding	chr11	66615887	66725854	PC	-	protein_coding	3829	opposite	7850_ID	chr11	66624535	66627946	3412	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	22
393	ENST00000310981.6_2	ENST00000322313.9_4	chr2	128459070	128462816	SFT2D3	+	protein_coding	chr2	128458600	128568745	WDR33	-	protein_coding	3746	opposite	12047_ID	chr2	128459071	128462816	3746	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	22	22
394	ENST00000311067.3_1	ENST00000672453.1_1	chr7	33765592	33768068	AC008080.1	+	lncRNA	chr7	33197271	33916792	BBS9	+	processed_transcript	2476	same	692_ID	chr7	33765593	33768068	2476	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	22
721	ENST00000359481.9_2	ENST00000646855.1_1	chr2	88047605	88058995	PLGLB2	+	protein_coding	chr2	87755006	88066878	AC133644.2	+	lncRNA	11390	same	9582_ID	chr2	88047606	88058995	11390	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	22
836	ENST00000362443.1	ENST00000373555.9_4	chr9	127649688	127649828	RNU4-82P	-	snRNA	chr9	127640553	127703362	GOLGA1	-	protein_coding	140	same	10709_ID	chr9	127649689	127649828	140	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	22
863	ENST00000362681.1	ENST00000261349.9_4	chr12	12379607	12379711	RNU6-545P	+	snRNA	chr12	12268958	12419978	LRP6	-	protein_coding	104	opposite	11327_ID	chr12	12379608	12379711	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	22
1183	ENST00000364428.1	ENST00000398844.7_2	chr5	134036861	134036968	RNU6-1164P	-	snRNA	chr5	133984474	134063599	SEC24A	+	protein_coding	107	opposite	10871_ID	chr5	134036862	134036968	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	22
1186	ENST00000364438.1	ENST00000409478.5_2	chr2	136414046	136414149	RNU6-512P	-	snRNA	chr2	136289070	136482836	R3HDM1	+	protein_coding	103	opposite	11297_ID	chr2	136414047	136414149	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	22
1202	ENST00000364520.1	ENST00000631589.1_3	chr10	21950563	21950670	RNU6-1141P	-	snRNA	chr10	21813603	22032559	MLLT10	+	protein_coding	107	opposite	10850_ID	chr10	21950564	21950670	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	22
1401	ENST00000365739.2	ENST00000367657.7_3	chr1	176998498	176998581	MIR488	-	miRNA	chr1	176826437	177134003	ASTN1	-	protein_coding	83	same	8794_ID	chr1	176998499	176998581	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	22
1629	ENST00000381796.1_1	ENST00000262960.13_3	chr19	4679293	4685960	DPP9-AS1	+	lncRNA	chr19	4675237	4723875	DPP9	-	protein_coding	6667	opposite	6843_ID	chr19	4679294	4685960	6667	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	22
1710	ENST00000384005.1	ENST00000406961.5_2	chr2	24899177	24899284	RNU6-936P	+	snRNA	chr2	24714800	24993571	NCOA1	+	protein_coding	107	same	11621_ID	chr2	24899178	24899284	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	22
1743	ENST00000384114.1	ENST00000414786.6_1	chr22	51129687	51129791	RNU6-409P	-	snRNA	chr22	51112842	51171726	SHANK3	+	processed_transcript	104	opposite	11218_ID	chr22	51129688	51129791	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	22
1748	ENST00000384128.1	ENST00000610822.1_1	chr10	70671408	70671515	RNU6-571P	-	snRNA	chr10	70661044	70706603	DDX50	+	protein_coding	107	opposite	11345_ID	chr10	70671409	70671515	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	22
1793	ENST00000384258.1	ENST00000402219.8_4	chr2	39309729	39309833	RNU6-198P	+	snRNA	chr2	39208689	39348192	SOS1	-	protein_coding	104	opposite	11066_ID	chr2	39309730	39309833	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
1805	ENST00000384284.1	ENST00000394835.7_5	chr17	28386069	28386165	RNY4P13	-	misc_RNA	chr17	28268622	28435470	EFCAB5	+	protein_coding	96	opposite	11848_ID	chr17	28386070	28386165	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	22
1821	ENST00000384328.1	ENST00000303635.12_2	chr1	7279419	7279584	RNU1-8P	+	snRNA	chr1	6845513	7829766	CAMTA1	+	protein_coding	165	same	10609_ID	chr1	7279420	7279584	165	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	22
1827	ENST00000384362.1	ENST00000310396.10_4	chr7	120835001	120835111	RNU6-517P	-	snRNA	chr7	120628764	120937496	CPED1	+	protein_coding	110	opposite	11303_ID	chr7	120835002	120835111	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	22
1831	ENST00000384376.1	ENST00000375169.7_5	chrX	54369978	54370085	RNU6-434P	+	snRNA	chrX	54219255	54384438	WNK3	-	protein_coding	107	opposite	11237_ID	chrX	54369979	54370085	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
1915	ENST00000384597.1	ENST00000339859.8_3	chr10	75288808	75288915	RNU6-883P	-	snRNA	chr10	75257295	75385408	USP54	-	protein_coding	107	same	11582_ID	chr10	75288809	75288915	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	22
1926	ENST00000384617.1	ENST00000631589.1_3	chr10	21853399	21853506	RNU6-306P	-	snRNA	chr10	21813603	22032559	MLLT10	+	protein_coding	107	opposite	11144_ID	chr10	21853400	21853506	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	22
1968	ENST00000384743.1	ENST00000381946.5_3	chr13	25277693	25277803	RNY1P7	-	misc_RNA	chr13	25254545	25286610	ATP12A	+	protein_coding	110	opposite	11836_ID	chr13	25277694	25277803	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	22
2018	ENST00000384849.1	ENST00000341179.11_2	chr9	131006999	131007109	MIR199B	-	miRNA	chr9	130965657	131017523	DNM1	+	protein_coding	110	opposite	8164_ID	chr9	131007000	131007109	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	22
2028	ENST00000384858.1	ENST00000366922.3_2	chr1	220291194	220291304	MIR215	-	miRNA	chr1	220267473	220321383	IARS2	+	protein_coding	110	opposite	8181_ID	chr1	220291195	220291304	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	22
2053	ENST00000384892.1	ENST00000366922.3_2	chr1	220291498	220291583	MIR194-1	-	miRNA	chr1	220267473	220321383	IARS2	+	protein_coding	85	opposite	8149_ID	chr1	220291499	220291583	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	22
2063	ENST00000384905.1	ENST00000389418.9_4	chr7	158325409	158325505	MIR595	-	miRNA	chr7	157331749	158380515	PTPRN2	-	protein_coding	96	same	8997_ID	chr7	158325410	158325505	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
2074	ENST00000384921.1	ENST00000409478.5_2	chr2	136422966	136423048	MIR128-1	+	miRNA	chr2	136289070	136482836	R3HDM1	+	protein_coding	82	same	8038_ID	chr2	136422967	136423048	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	22
2208	ENST00000385225.1	ENST00000389418.9_4	chr7	157367027	157367114	MIR153-2	-	miRNA	chr7	157331749	158380515	PTPRN2	-	protein_coding	87	same	8109_ID	chr7	157367028	157367114	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	22
2365	ENST00000390888.1	ENST00000321990.5_2	chr17	29188860	29188956	RNU6-298P	+	snRNA	chr17	29158983	29222887	ATAD5	+	protein_coding	96	same	11138_ID	chr17	29188861	29188956	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	22
2539	ENST00000399242.3_1	ENST00000460012.7_6	chr3	155459930	155461515	AC104472.1	-	lncRNA	chr3	155197669	155462860	PLCH1	-	protein_coding	1585	same	3543_ID	chr3	155459931	155461515	1585	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
2557	ENST00000401111.1	ENST00000369466.9_2	chr1	117637264	117637350	MIR942	+	miRNA	chr1	117602947	117650075	TTF2	+	protein_coding	86	same	9119_ID	chr1	117637265	117637350	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	22
2670	ENST00000408138.1	ENST00000569100.5_3	chr15	34820490	34820572	MIR1233-2	-	miRNA	chr15	34817482	34880704	GOLGA8B	-	retained_intron	82	same	7992_ID	chr15	34820491	34820572	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	22
2673	ENST00000408152.2	ENST00000264350.8_2	chr4	89415083	89415168	AC083829.1	+	miRNA	chr4	89378269	89427314	HERC5	+	protein_coding	85	same	2716_ID	chr4	89415084	89415168	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	22
2676	ENST00000408160.1	ENST00000613296.6_5	chr2	73715705	73715787	AC096546.1	-	miRNA	chr2	73612963	73837043	ALMS1	+	protein_coding	82	opposite	3273_ID	chr2	73715706	73715787	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	22
2716	ENST00000408284.1	ENST00000475244.5_3	chr3	122645842	122645968	AC078794.1	-	miRNA	chr3	122628040	122747452	SEMA5B	-	nonsense_mediated_decay	126	same	2584_ID	chr3	122645843	122645968	126	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	22
2753	ENST00000408367.1	ENST00000371998.8_2	chr20	46199678	46199759	AL021394.1	+	miRNA	chr20	46130630	46285616	NCOA3	+	protein_coding	81	same	4447_ID	chr20	46199679	46199759	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
2813	ENST00000408518.1	ENST00000264709.7_5	chr2	25551508	25551590	MIR1301	-	miRNA	chr2	25450723	25565459	DNMT3A	-	protein_coding	82	same	8066_ID	chr2	25551509	25551590	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
2877	ENST00000408658.1	ENST00000395745.6_1	chr3	47891044	47891119	MIR1226	+	miRNA	chr3	47844623	47891682	DHX30	+	nonsense_mediated_decay	75	same	7985_ID	chr3	47891045	47891119	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	22
2902	ENST00000408722.1	ENST00000473125.5_3	chr15	34674269	34674351	MIR1233-1	-	miRNA	chr15	34671268	34699888	GOLGA8A	-	retained_intron	82	same	7991_ID	chr15	34674270	34674351	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	22
2983	ENST00000409239.5_5	ENST00000461287.1_3	chr6	31679547	31681842	LY6G6E	-	protein_coding	chr6	31654738	31681849	AL662899.1	-	nonsense_mediated_decay	2295	same	7888_ID	chr6	31679548	31681842	2295	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	22
2988	ENST00000409610.1_1	ENST00000389418.9_4	chr7	157406714	157411457	AC005481.1	+	lncRNA	chr7	157331749	158380515	PTPRN2	-	protein_coding	4743	opposite	296_ID	chr7	157406715	157411457	4743	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	22
3048	ENST00000410334.1	ENST00000398844.7_2	chr5	134051172	134051272	RNU6-757P	+	snRNA	chr5	133984474	134063599	SEC24A	+	protein_coding	100	same	11478_ID	chr5	134051173	134051272	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	22
3197	ENST00000411026.1	ENST00000510118.5_5	chr6	166922841	166922921	MIR1913	-	miRNA	chr6	166822875	167275999	RPS6KA2	-	protein_coding	80	same	8144_ID	chr6	166922842	166922921	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	22
3244	ENST00000411292.1	ENST00000299980.9_5	chr16	71792304	71792390	SNORD71	-	snoRNA	chr16	71762902	71842737	AP1G1	-	protein_coding	86	same	12442_ID	chr16	71792305	71792390	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	22
3257	ENST00000411373.1	ENST00000513440.6_4	chr4	56406668	56407002	RN7SKP30	-	misc_RNA	chr4	56294069	56413076	CLOCK	-	protein_coding	334	same	9889_ID	chr4	56406669	56407002	334	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
3404	ENST00000414633.1_1	ENST00000383836.8_7	chr3	9055806	9057663	SRGAP3-AS1	+	lncRNA	chr3	9022274	9291330	SRGAP3	-	protein_coding	1857	opposite	12541_ID	chr3	9055807	9057663	1857	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	22
3494	ENST00000416770.1_3	ENST00000510118.5_5	chr6	166874150	166878871	RPS6KA2-IT1	-	lncRNA	chr6	166822875	167275999	RPS6KA2	-	protein_coding	4721	same	11962_ID	chr6	166874151	166878871	4721	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	22
3513	ENST00000417355.1_1	ENST00000409251.7_3	chr2	220163723	220168852	AC114803.1	+	lncRNA	chr2	220154344	220174220	PTPRN	-	protein_coding	5129	opposite	3876_ID	chr2	220163724	220168852	5129	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	22
3589	ENST00000419535.1_1	ENST00000310758.8_3	chr7	37037400	37053235	ELMO1-AS1	+	lncRNA	chr7	36893965	37488852	ELMO1	-	protein_coding	15835	opposite	6894_ID	chr7	37037401	37053235	15835	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	22
3593	ENST00000419643.1_1	ENST00000360835.9_5	chr22	43628146	43635016	Z82214.1	+	lncRNA	chr22	43593285	43739378	SCUBE1	-	protein_coding	6870	opposite	12942_ID	chr22	43628147	43635016	6870	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	22
3596	ENST00000419703.1_1	ENST00000297267.14_2	chr6	159661817	159664361	FNDC1-IT1	+	lncRNA	chr6	159590431	159693140	FNDC1	+	protein_coding	2544	same	7050_ID	chr6	159661818	159664361	2544	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	22
3606	ENST00000419899.1_3	ENST00000326793.11_6	chr3	195001451	195003470	ACAP2-IT1	-	lncRNA	chr3	194995473	195163749	ACAP2	-	protein_coding	2019	same	4321_ID	chr3	195001452	195003470	2019	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	22
3650	ENST00000421166.1_1	ENST00000367134.2_5	chr1	205904255	205904896	AL713965.1	+	lncRNA	chr1	205882181	205912588	SLC26A9	-	protein_coding	641	opposite	5891_ID	chr1	205904256	205904896	641	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	22
3703	ENST00000422259.1_1	ENST00000370192.8_3	chr1	98262520	98263622	DPYD-AS2	+	lncRNA	chr1	97543298	98386590	DPYD	-	protein_coding	1146	opposite	6845_ID	chr1	98262521	98263622	1102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	22
3793	ENST00000424650.1_3	ENST00000379374.5_2	chrX	22180849	22191100	PHEX-AS1	-	lncRNA	chrX	22050442	22269427	PHEX	+	protein_coding	10251	opposite	9550_ID	chrX	22180850	22191100	10251	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	22
3805	ENST00000424982.1_3	ENST00000370192.8_3	chr1	97859709	97885697	DPYD-IT1	-	lncRNA	chr1	97543298	98386590	DPYD	-	protein_coding	25988	same	6846_ID	chr1	97859710	97885697	25988	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	22
3870	ENST00000427317.1_1	ENST00000303635.12_2	chr1	7429002	7430331	CAMTA1-IT1	+	lncRNA	chr1	6845513	7829766	CAMTA1	+	protein_coding	1329	same	6549_ID	chr1	7429003	7430331	1329	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	22
3931	ENST00000429268.1_1	ENST00000601538.5_3	chr11	70492269	70493667	SHANK2-AS2	+	lncRNA	chr11	70315539	70935808	SHANK2	-	protein_coding	1398	opposite	12059_ID	chr11	70492270	70493667	1398	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	22
3959	ENST00000430057.1_3	ENST00000380861.9_3	chrX	9992881	10006694	WWC3-AS1	-	lncRNA	chrX	9983293	10112514	WWC3	+	protein_coding	13813	opposite	12917_ID	chrX	9992882	10006694	13813	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
3984	ENST00000430613.2	ENST00000644055.1_1	chr1	235582829	235590298	RP11-293G6__A.2	-	antisense	chr1	235491884	235612267	AL357556.3	+	nonsense_mediated_decay	7469	opposite	11887_ID	chr1	235582830	235590298	7469	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	22
4075	ENST00000433186.1_1	ENST00000274498.9_3	chr5	142572064	142573731	ARHGAP26-IT1	+	lncRNA	chr5	142149941	142608576	ARHGAP26	+	protein_coding	1667	same	6334_ID	chr5	142572065	142573731	1667	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	22
4119	ENST00000434610.1_3	ENST00000274498.9_3	chr5	142239168	142248487	ARHGAP26-AS1	-	lncRNA	chr5	142149941	142608576	ARHGAP26	+	protein_coding	9319	opposite	6333_ID	chr5	142239169	142248487	9319	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
4194	ENST00000436489.1_1	ENST00000389418.9_4	chr7	157820064	157823820	AC011899.1	+	lncRNA	chr7	157331749	158380515	PTPRN2	-	protein_coding	3756	opposite	1306_ID	chr7	157820065	157823820	3756	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	22
4245	ENST00000437864.1_3	ENST00000375147.8_2	chr9	100396796	100398333	AL162385.2	-	lncRNA	chr9	100396102	100436030	NCBP1	+	protein_coding	1537	opposite	5192_ID	chr9	100396797	100398333	1537	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
4254	ENST00000438344.1_1	ENST00000544583.6_4	chr17	1085186	1088380	AC016292.1	+	lncRNA	chr17	906766	1090616	ABR	-	protein_coding	3194	opposite	1527_ID	chr17	1085187	1088380	3194	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
4322	ENST00000440032.1_3	ENST00000303635.12_2	chr1	7501155	7501614	CAMTA1-AS1	-	lncRNA	chr1	6845513	7829766	CAMTA1	+	protein_coding	459	opposite	6547_ID	chr1	7501156	7501614	459	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	22
4323	ENST00000440074.1_3	ENST00000672453.1_1	chr7	33908112	33913843	AC008080.3	-	lncRNA	chr7	33197271	33916792	BBS9	+	processed_transcript	5731	opposite	694_ID	chr7	33908113	33913843	5731	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	22
4353	ENST00000440885.1_1	ENST00000620048.6_6	chr1	197726448	197731095	AL365258.1	+	lncRNA	chr1	197473877	197744610	DENND1B	-	protein_coding	4647	opposite	5535_ID	chr1	197726449	197731095	4647	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	22
4376	ENST00000441587.3_2	ENST00000613296.6_5	chr2	73683890	73686609	ALMS1-IT1	+	lncRNA	chr2	73612963	73837043	ALMS1	+	protein_coding	2719	same	5933_ID	chr2	73683891	73686609	2719	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	22
4441	ENST00000443338.1_2	ENST00000389418.9_4	chr7	157647491	157655703	PTPRN2-AS1	+	lncRNA	chr7	157331749	158380515	PTPRN2	-	protein_coding	8483	opposite	9681_ID	chr7	157647492	157655703	8212	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	22
4458	ENST00000444122.2_3	ENST00000510118.5_5	chr6	166999091	167001082	RAMACL	-	protein_coding	chr6	166822875	167275999	RPS6KA2	-	protein_coding	1991	same	9699_ID	chr6	166999092	167001082	1991	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	22
4479	ENST00000444923.1_3	ENST00000289815.12_2	chr1	20620703	20649680	AL020998.1	-	lncRNA	chr1	20617411	20681387	VWA5B1	+	protein_coding	28977	opposite	4443_ID	chr1	20620704	20649680	28977	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	22
4504	ENST00000445532.1_3	ENST00000601538.5_3	chr11	70323381	70323697	AP001271.1	-	lncRNA	chr11	70315539	70935808	SHANK2	-	protein_coding	316	same	6116_ID	chr11	70323382	70323697	316	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	22
4512	ENST00000445861.3_1	ENST00000328252.4_2	chr9	119160435	119162885	PAPPA-AS1	-	lncRNA	chr9	118916069	119164600	PAPPA	+	protein_coding	2450	opposite	9498_ID	chr9	119160436	119162885	2450	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	22	22
4611	ENST00000448541.1_3	ENST00000389418.9_4	chr7	157531701	157533148	AC006003.1	-	lncRNA	chr7	157331749	158380515	PTPRN2	-	protein_coding	1447	same	394_ID	chr7	157531702	157533148	1447	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	22
4616	ENST00000448698.1_1	ENST00000389418.9_4	chr7	158330186	158332571	AC078942.1	+	lncRNA	chr7	157331749	158380515	PTPRN2	-	protein_coding	2385	opposite	2608_ID	chr7	158330187	158332571	2385	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
4697	ENST00000451100.1_3	ENST00000328252.4_2	chr9	119050896	119080968	AL137024.1	-	lncRNA	chr9	118916069	119164600	PAPPA	+	protein_coding	105059	opposite	4936_ID	chr9	119050897	119080968	30072	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	22
4725	ENST00000451646.1_3	ENST00000613533.4_1	chr1	7870301	7887402	Z98884.1	-	lncRNA	chr1	7844488	7905236	PER3	+	protein_coding	17101	opposite	12978_ID	chr1	7870302	7887402	17101	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	22
4727	ENST00000451662.1_3	ENST00000376279.7_1	chr13	101116693	101132539	PCCA-AS1	-	lncRNA	chr13	100741268	101182686	PCCA	+	protein_coding	16766	opposite	9510_ID	chr13	101116694	101132539	15846	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	22
4834	ENST00000454526.1_3	ENST00000438796.6_3	chr3	197557555	197558167	AC055764.1	-	lncRNA	chr3	197518105	197615307	LRCH3	+	protein_coding	612	opposite	2333_ID	chr3	197557556	197558167	612	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	22
4850	ENST00000455149.1_3	ENST00000672453.1_1	chr7	33769903	33771676	AC008080.2	-	lncRNA	chr7	33197271	33916792	BBS9	+	processed_transcript	1773	opposite	693_ID	chr7	33769904	33771676	1773	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	22
4862	ENST00000455447.1_3	ENST00000367674.7_4	chr1	175507910	175525954	TNR-IT1	-	lncRNA	chr1	175284329	175712731	TNR	-	protein_coding	18044	same	12756_ID	chr1	175507911	175525954	18044	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
4911	ENST00000456701.1_3	ENST00000303635.12_2	chr1	7068435	7074339	AL512330.1	-	lncRNA	chr1	6845513	7829766	CAMTA1	+	protein_coding	5904	opposite	5681_ID	chr1	7068436	7074339	5904	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	22
5045	ENST00000459086.1	ENST00000313367.7_6	chr7	24940430	24940524	AC004016.1	+	miRNA	chr7	24836158	25019797	OSBPL3	-	protein_coding	94	opposite	91_ID	chr7	24940431	24940524	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
5103	ENST00000459412.1	ENST00000636222.1_1	chr17	76063027	76063134	RNU6-625P	+	snRNA	chr17	75955321	76102118	TNRC6C	+	protein_coding	107	same	11389_ID	chr17	76063028	76063134	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	22
5114	ENST00000459465.1	ENST00000529047.6_4	chr11	66687232	66687294	RNU7-23P	+	snRNA	chr11	66615887	66725854	PC	-	protein_coding	62	opposite	11768_ID	chr11	66687233	66687294	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	22
5155	ENST00000460609.2	ENST00000336498.8_2	chr4	148730076	148730358	RN7SL254P	+	misc_RNA	chr4	148653238	148993927	ARHGAP10	+	protein_coding	282	same	10057_ID	chr4	148730077	148730358	282	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
5164	ENST00000461754.2	ENST00000403714.8_2	chr2	25280900	25281196	RN7SL856P	+	misc_RNA	chr2	25264944	25382004	EFR3B	+	protein_coding	296	same	10483_ID	chr2	25280901	25281196	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
5241	ENST00000466709.2	ENST00000397906.6_6	chr22	28452142	28452441	RN7SL757P	-	misc_RNA	chr22	28374001	29075853	TTC28	-	protein_coding	299	same	10412_ID	chr22	28452143	28452441	299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	22
5262	ENST00000467969.2	ENST00000305877.13_5	chr22	23603970	23604258	RN7SL263P	-	misc_RNA	chr22	23522695	23660224	BCR	+	protein_coding	288	opposite	10061_ID	chr22	23603971	23604258	288	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	22
5267	ENST00000468356.3_3	ENST00000496514.6_2	chr4	646847	650002	PDE6B-AS1	-	lncRNA	chr4	619361	664571	PDE6B	+	protein_coding	3364	opposite	9526_ID	chr4	646848	650002	3155	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	22
5301	ENST00000470627.2	ENST00000359139.7_3	chr22	50809638	50809923	RN7SL500P	+	misc_RNA	chr22	50781732	50883519	PPP6R2	+	protein_coding	285	same	10233_ID	chr22	50809639	50809923	285	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
5468	ENST00000481676.2	ENST00000332826.7_4	chr11	440405	440693	RN7SL838P	-	misc_RNA	chr11	417937	442011	ANO9	-	protein_coding	288	same	10469_ID	chr11	440406	440693	288	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
5619	ENST00000492268.2	ENST00000651865.1_3	chr16	14695683	14695951	RN7SL274P	-	misc_RNA	chr16	14529556	14724117	PARN	-	protein_coding	268	same	10071_ID	chr16	14695684	14695951	268	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	22
5631	ENST00000492941.2	ENST00000627585.2_3	chr7	128610787	128611087	RN7SL306P	+	misc_RNA	chr7	128594233	128695227	TNPO3	-	protein_coding	300	opposite	10093_ID	chr7	128610788	128611087	300	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	22
5726	ENST00000499962.1_1	ENST00000397111.9_5	chr11	3050623	3062490	CARS1-AS1	+	lncRNA	chr11	3022151	3078843	CARS1	-	protein_coding	12252	opposite	6553_ID	chr11	3050624	3062490	11867	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	22
5791	ENST00000503710.1_1	ENST00000515393.5_4	chr5	94314854	94316597	MCTP1-AS1	+	lncRNA	chr5	94040804	94620279	MCTP1	-	protein_coding	1743	opposite	7932_ID	chr5	94314855	94316597	1743	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	22
5800	ENST00000503918.1_1	ENST00000286657.10_5	chr4	73188744	73196468	AC095056.1	+	lncRNA	chr4	73146685	73434938	ADAMTS3	-	protein_coding	7724	opposite	3264_ID	chr4	73188745	73196468	7724	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	22
5965	ENST00000508986.1_3	ENST00000322350.10_3	chr5	38425137	38427478	EGFLAM-AS1	-	lncRNA	chr5	38258660	38465582	EGFLAM	+	protein_coding	2341	opposite	6874_ID	chr5	38425138	38427478	2341	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	22
6020	ENST00000510879.1_1	ENST00000382496.10_4	chr5	9511444	9518198	SEMA5A-AS1	+	lncRNA	chr5	9035144	9546187	SEMA5A	-	protein_coding	6754	opposite	12033_ID	chr5	9511445	9518198	6754	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
6125	ENST00000513849.1_1	ENST00000515393.5_4	chr5	94124493	94129304	AC008534.1	+	lncRNA	chr5	94040804	94620279	MCTP1	-	protein_coding	4811	opposite	741_ID	chr5	94124494	94129304	4811	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	22
6173	ENST00000515377.1_3	ENST00000382496.10_4	chr5	9519964	9523290	AC027335.1	-	lncRNA	chr5	9035144	9546187	SEMA5A	-	protein_coding	3326	same	2208_ID	chr5	9519965	9523290	3326	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
6193	ENST00000515887.1	ENST00000331830.7_4	chr1	205031379	205031470	AL583832.1	+	miRNA	chr1	205012339	205047417	CNTN2	+	protein_coding	91	same	5723_ID	chr1	205031380	205031470	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	22
6539	ENST00000516893.1	ENST00000403733.8_4	chr4	184090500	184090570	RNU7-158P	-	snRNA	chr4	184020409	184241930	WWC2	+	protein_coding	70	opposite	11732_ID	chr4	184090501	184090570	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
6600	ENST00000517056.1	ENST00000537638.6_1	chr12	57904846	57904918	RNU6-594P	+	snRNA	chr12	57881076	57911352	MARS1	+	nonsense_mediated_decay	72	same	11364_ID	chr12	57904847	57904918	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	22
6653	ENST00000517181.1	ENST00000287152.12_4	chr6	39588120	39588240	RNU1-54P	-	snRNA	chr6	39297765	39693184	KIF6	-	protein_coding	120	same	10590_ID	chr6	39588121	39588240	120	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	22
6735	ENST00000518054.1_1	ENST00000517951.5_3	chr5	156992971	156996106	AC106801.1	+	lncRNA	chr5	156822541	157002783	ADAM19	-	nonsense_mediated_decay	3135	opposite	3652_ID	chr5	156992972	156996106	3135	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	22
6746	ENST00000518354.5_1	ENST00000648948.2_5	chr8	140923481	140928864	AC021744.1	+	lncRNA	chr8	140739967	141468678	TRAPPC9	-	protein_coding	5383	opposite	1804_ID	chr8	140923482	140928864	5383	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	22
7041	ENST00000528407.1_1	ENST00000649678.1_3	chr8	38279406	38283614	AC087623.1	+	lncRNA	chr8	38257732	38325225	FGFR1	-	nonsense_mediated_decay	4208	opposite	2837_ID	chr8	38279407	38283614	4208	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	22
7045	ENST00000528520.1_3	ENST00000328194.8_5	chr11	9263994	9267056	AP006259.1	-	lncRNA	chr11	9160371	9286897	DENND5A	-	protein_coding	3062	same	6310_ID	chr11	9263995	9267056	3062	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
7099	ENST00000530479.1_1	ENST00000530122.1_1	chr20	57285850	57286689	AL139349.1	+	lncRNA	chr20	57226489	57290466	STX16-NPEPL1	+	nonsense_mediated_decay	839	same	5040_ID	chr20	57285851	57286689	839	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	22
7166	ENST00000532626.1_1	ENST00000394773.7_5	chr11	62373632	62373877	AP001458.1	+	lncRNA	chr11	62369689	62380247	EML3	-	protein_coding	245	opposite	6135_ID	chr11	62373633	62373877	245	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	22
7198	ENST00000533843.1_1	ENST00000534127.5_4	chr11	8806087	8831776	AC026894.1	+	lncRNA	chr11	8714897	8932498	DENND2B	-	protein_coding	41454	opposite	2178_ID	chr11	8806088	8831776	25689	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	22
7225	ENST00000535594.1_3	ENST00000355086.8_2	chr12	64432341	64491398	AC020611.2	-	lncRNA	chr12	64238479	64555997	SRGAP1	+	protein_coding	59057	opposite	1711_ID	chr12	64432342	64491398	59057	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	22
7231	ENST00000535806.1_3	ENST00000355086.8_2	chr12	64502542	64514269	AC025576.2	-	lncRNA	chr12	64238479	64555997	SRGAP1	+	protein_coding	11727	opposite	2097_ID	chr12	64502543	64514269	11727	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	22
7241	ENST00000536455.1_3	ENST00000355086.8_2	chr12	64540167	64541637	AC025576.1	-	lncRNA	chr12	64238479	64555997	SRGAP1	+	protein_coding	1470	opposite	2096_ID	chr12	64540168	64541637	1470	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	22	22
7550	ENST00000552675.1_3	ENST00000435036.6_1	chr14	105934129	105936954	AL928654.2	-	lncRNA	chr14	105886156	105937064	MTA1	+	protein_coding	2825	opposite	5919_ID	chr14	105934130	105936954	2825	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	19	22
7844	ENST00000560499.1_3	ENST00000437600.9_2	chr7	101465526	101468009	AC005096.1	-	lncRNA	chr7	101459183	101927250	CUX1	+	protein_coding	2483	opposite	237_ID	chr7	101465527	101468009	2483	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
7965	ENST00000563083.1_3	ENST00000379312.7_3	chr16	67576025	67576866	AC027682.2	-	lncRNA	chr16	67562719	67580689	RIPOR1	+	protein_coding	841	opposite	2225_ID	chr16	67576026	67576866	841	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	13	22
8044	ENST00000564717.1_3	ENST00000379312.7_3	chr16	67576206	67576475	AC027682.3	-	lncRNA	chr16	67562719	67580689	RIPOR1	+	protein_coding	269	opposite	2227_ID	chr16	67576207	67576475	269	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	13	22
8136	ENST00000566572.1_2	ENST00000437600.9_2	chr7	101796634	101797743	AC005086.2	-	lncRNA	chr7	101459183	101927250	CUX1	+	protein_coding	1109	opposite	234_ID	chr7	101796635	101797743	1109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	22
8151	ENST00000566956.1_3	ENST00000357084.7_1	chr16	28890277	28891241	ATP2A1-AS1	-	lncRNA	chr16	28889725	28915785	ATP2A1	+	protein_coding	964	opposite	6370_ID	chr16	28890278	28891241	964	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	22
8164	ENST00000567122.1_3	ENST00000379312.7_3	chr16	67572459	67574009	AC027682.5	-	lncRNA	chr16	67562719	67580689	RIPOR1	+	protein_coding	1550	opposite	2228_ID	chr16	67572460	67574009	1550	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	22
8315	ENST00000570974.1_1	ENST00000437048.7_6	chr17	426379	443816	AC015853.3	+	lncRNA	chr17	411907	618079	VPS53	-	protein_coding	17437	opposite	1489_ID	chr17	426380	443816	17437	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	22
8370	ENST00000574008.1_1	ENST00000437048.7_6	chr17	455805	456657	AC015853.1	+	lncRNA	chr17	411907	618079	VPS53	-	protein_coding	852	opposite	1488_ID	chr17	455806	456657	852	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	22
8405	ENST00000575985.1_1	ENST00000348066.8_8	chr17	4889760	4890619	AC004771.4	+	lncRNA	chr17	4871291	4890970	CAMTA2	-	protein_coding	859	opposite	165_ID	chr17	4889761	4890619	859	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
8500	ENST00000577527.1_1	ENST00000637651.1_3	chr18	5463625	5480974	AP005059.2	+	lncRNA	chr18	5392443	5630662	EPB41L3	-	nonsense_mediated_decay	17349	opposite	6282_ID	chr18	5463626	5480974	17349	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	22
8570	ENST00000577829.1	ENST00000341179.11_2	chr9	131007225	131007309	MIR3154	-	miRNA	chr9	130965657	131017523	DNM1	+	protein_coding	84	opposite	8275_ID	chr9	131007226	131007309	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	22
8668	ENST00000578447.1	ENST00000402198.7_6	chr3	9467940	9468034	AC018506.1	-	miRNA	chr3	9439298	9519838	SETD5	+	protein_coding	94	opposite	1622_ID	chr3	9467941	9468034	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	22
8685	ENST00000578566.1	ENST00000544583.6_4	chr17	925715	925799	MIR3183	-	miRNA	chr17	906766	1090616	ABR	-	protein_coding	84	same	8298_ID	chr17	925716	925799	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	22
8751	ENST00000578951.1	ENST00000336498.8_2	chr4	148703745	148703819	MIR4799	+	miRNA	chr4	148653238	148993927	ARHGAP10	+	protein_coding	74	same	8783_ID	chr4	148703746	148703819	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
8772	ENST00000579074.1	ENST00000601538.5_3	chr11	70718374	70718473	MIR3664	-	miRNA	chr11	70315539	70935808	SHANK2	-	protein_coding	99	same	8374_ID	chr11	70718375	70718473	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	22
8798	ENST00000579233.1	ENST00000397906.6_6	chr22	29038968	29039258	RN7SL162P	-	misc_RNA	chr22	28374001	29075853	TTC28	-	protein_coding	290	same	9985_ID	chr22	29038969	29039258	290	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
8847	ENST00000579525.1	ENST00000649792.2_4	chr11	9111858	9111926	MIR5691	-	miRNA	chr11	9041022	9113146	SCUBE2	-	protein_coding	68	same	8964_ID	chr11	9111859	9111926	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
8944	ENST00000580071.1_1	ENST00000383096.7_3	chr18	30534038	30537962	AC090371.1	+	lncRNA	chr18	30517370	31020657	CCDC178	-	protein_coding	3924	opposite	2890_ID	chr18	30534039	30537962	3924	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	22
9041	ENST00000580604.1	ENST00000437600.9_2	chr7	101881600	101881686	AC005088.1	-	miRNA	chr7	101459183	101927250	CUX1	+	protein_coding	86	opposite	235_ID	chr7	101881601	101881686	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	22
9077	ENST00000580794.1	ENST00000409699.6_6	chr15	66332570	66332670	MIR4311	+	miRNA	chr15	66187416	66546085	MEGF11	-	protein_coding	100	opposite	8507_ID	chr15	66332571	66332670	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	22
9210	ENST00000581592.1	ENST00000529047.6_4	chr11	66701904	66701977	MIR3163	-	miRNA	chr11	66615887	66725854	PC	-	protein_coding	73	same	8285_ID	chr11	66701905	66701977	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	22
9301	ENST00000582079.1	ENST00000537638.6_1	chr12	57907699	57908023	RN7SL312P	+	misc_RNA	chr12	57881076	57911352	MARS1	+	nonsense_mediated_decay	324	same	10097_ID	chr12	57907700	57908023	324	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	22
9343	ENST00000582271.1	ENST00000382496.10_4	chr5	9053927	9054007	MIR4636	-	miRNA	chr5	9035144	9546187	SEMA5A	-	protein_coding	80	same	8622_ID	chr5	9053928	9054007	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	22
9344	ENST00000582272.1_1	ENST00000318217.10_4	chr17	30954756	31013502	AC025211.1	+	lncRNA	chr17	30819539	31204142	MYO1D	-	protein_coding	58746	opposite	2064_ID	chr17	30954757	31013502	58746	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	22
9351	ENST00000582317.1	ENST00000033079.7_5	chr5	137316149	137316247	AC106753.1	-	miRNA	chr5	137273648	137368720	FAM13B	-	protein_coding	98	same	3644_ID	chr5	137316150	137316247	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	22
9433	ENST00000582799.1	ENST00000377656.6_3	chr9	39191096	39191355	RN7SL640P	+	misc_RNA	chr9	39072763	39288300	CNTNAP3	-	protein_coding	259	opposite	10328_ID	chr9	39191097	39191355	259	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	22
9546	ENST00000583426.1_1	ENST00000582809.5_2	chr17	60627086	60629482	AC008026.3	+	lncRNA	chr17	60536018	60691025	TLK2	+	protein_coding	2396	same	680_ID	chr17	60627087	60629482	2396	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	22
9682	ENST00000584157.1_3	ENST00000321990.5_2	chr17	29190938	29191958	AC130324.1	-	lncRNA	chr17	29158983	29222887	ATAD5	+	protein_coding	1020	opposite	4056_ID	chr17	29190939	29191958	1020	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	22
9852	ENST00000585119.1	ENST00000349213.7_3	chr1	235353348	235353431	MIR4753	-	miRNA	chr1	235330209	235491534	ARID4B	-	protein_coding	83	same	8741_ID	chr1	235353349	235353431	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	22
10073	ENST00000591087.1_1	ENST00000587152.6_5	chr19	46144751	46146047	EML2-AS1	+	lncRNA	chr19	46112657	46148860	EML2	-	protein_coding	1347	opposite	6904_ID	chr19	46144752	46146047	1296	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	22
10175	ENST00000594472.1_4	ENST00000402219.8_4	chr2	39219419	39220977	SOS1-IT1	-	lncRNA	chr2	39208689	39348192	SOS1	-	protein_coding	1579	same	12489_ID	chr2	39219420	39220977	1558	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	22
10254	ENST00000596954.1_3	ENST00000283365.13_2	chr18	32317758	32347627	AC022601.1	-	lncRNA	chr18	32073253	32471808	DTNA	+	protein_coding	29869	opposite	1893_ID	chr18	32317759	32347627	29869	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	22
10353	ENST00000599734.1	ENST00000651865.1_3	chr16	14564841	14565054	AC092291.2	+	protein_coding	chr16	14529556	14724117	PARN	-	protein_coding	213	opposite	3072_ID	chr16	14564842	14565054	213	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	22
10479	ENST00000602640.1_1	ENST00000303635.12_2	chr1	7753183	7754904	AL359881.3	-	lncRNA	chr1	6845513	7829766	CAMTA1	+	protein_coding	1721	opposite	5502_ID	chr1	7753184	7754904	1721	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	22
10520	ENST00000602900.1_1	ENST00000393020.5_3	chr11	113239199	113239839	AP002840.2	+	lncRNA	chr11	113185532	113254266	TTC12	+	protein_coding	640	same	6214_ID	chr11	113239200	113239839	640	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	21	22
10522	ENST00000602916.1_1	ENST00000303635.12_2	chr1	7760763	7761030	AL359881.1	-	lncRNA	chr1	6845513	7829766	CAMTA1	+	protein_coding	267	opposite	5500_ID	chr1	7760764	7761030	267	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	22
10534	ENST00000602973.1_1	ENST00000303635.12_2	chr1	7758362	7758932	AL359881.2	-	lncRNA	chr1	6845513	7829766	CAMTA1	+	protein_coding	570	opposite	5501_ID	chr1	7758363	7758932	570	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	22
10730	ENST00000606640.1_1	ENST00000437600.9_2	chr7	101603395	101605174	AC005072.1	+	lncRNA	chr7	101459183	101927250	CUX1	+	protein_coding	1779	same	233_ID	chr7	101603396	101605174	1779	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	22
10823	ENST00000607504.1_3	ENST00000566586.5_3	chr15	42062953	42064820	AC073657.1	-	lncRNA	chr15	41961025	42065279	MGA	+	protein_coding	1977	opposite	2548_ID	chr15	42062954	42064820	1867	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	22	22
10928	ENST00000608596.1_1	ENST00000389418.9_4	chr7	157661229	157661846	AC011899.2	+	lncRNA	chr7	157331749	158380515	PTPRN2	-	protein_coding	617	opposite	1307_ID	chr7	157661230	157661846	617	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	22
10960	ENST00000608960.1	ENST00000612582.1_2	chr22	18036249	18037847	AC004019.18	+	lincRNA	chr22	17956134	18037850	CECR2	+	protein_coding	1598	same	93_ID	chr22	18036250	18037847	1598	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	19	22
11050	ENST00000609950.1_5	ENST00000466387.5_3	chr2	80802400	80845902	AC008067.1	-	lncRNA	chr2	79412356	80875904	CTNNA2	+	protein_coding	46097	opposite	690_ID	chr2	80802401	80845902	43502	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	22
11356	ENST00000616754.1_1	ENST00000260356.6_2	chr15	39880557	39881083	AC037198.2	-	lncRNA	chr15	39873279	39891667	THBS1	+	protein_coding	526	opposite	2278_ID	chr15	39880558	39881083	526	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	22
11413	ENST00000618051.1_3	ENST00000303635.12_2	chr1	7442547	7449814	CAMTA1-AS2	-	lncRNA	chr1	6845513	7829766	CAMTA1	+	protein_coding	7267	opposite	6548_ID	chr1	7442548	7449814	7267	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	22
11614	ENST00000622369.1_1	ENST00000343411.8_4	chr16	84119583	84120195	AC040169.3	-	lncRNA	chr16	84087367	84150547	MBTPS1	-	protein_coding	612	same	2290_ID	chr16	84119584	84120195	612	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	22
11674	ENST00000624061.1_3	ENST00000389622.7_2	chr3	97555829	97593535	AC110491.2	-	lncRNA	chr3	97540854	97663828	CRYBG3	+	protein_coding	37706	opposite	3788_ID	chr3	97555830	97593535	37706	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	22
11804	ENST00000631594.3_6	ENST00000648948.2_5	chr8	141104992	141110642	PEG13	-	lncRNA	chr8	140739967	141468678	TRAPPC9	-	protein_coding	5650	same	9534_ID	chr8	141104993	141110642	5650	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	22
11809	ENST00000632749.1_3	ENST00000633556.3_4	chr6	106899370	106905123	AL109920.1	-	lncRNA	chr6	106808591	107019892	CRYBG1	+	protein_coding	5753	opposite	4710_ID	chr6	106899371	106905123	5753	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	22
11833	ENST00000634985.1_1	ENST00000406316.6_5	chr2	50848100	50860131	AC009234.1	+	lncRNA	chr2	50145642	51259699	NRXN1	-	protein_coding	12031	opposite	923_ID	chr2	50848101	50860131	12031	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	22
11987	ENST00000643055.1_1	ENST00000613296.6_5	chr2	73696651	73698157	AC074008.1	+	lncRNA	chr2	73612963	73837043	ALMS1	+	protein_coding	1506	same	2563_ID	chr2	73696652	73698157	1506	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	22
12009	ENST00000646955.1_3	ENST00000644055.1_1	chr1	235529667	235530681	AL357556.5	-	lncRNA	chr1	235491884	235612267	AL357556.3	+	nonsense_mediated_decay	1014	opposite	5427_ID	chr1	235529668	235530681	1014	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	22
12022	ENST00000647670.1_3	ENST00000369005.6_4	chr10	123777496	123778675	AC063960.1	-	lncRNA	chr10	123748677	124014057	TACC2	+	protein_coding	1179	opposite	2355_ID	chr10	123777497	123778675	1179	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
12027	ENST00000647803.1_3	ENST00000555818.5_2	chr14	72201643	72206511	AC004900.1	-	lncRNA	chr14	71996041	72207946	SIPA1L1	+	protein_coding	4868	opposite	193_ID	chr14	72201644	72206511	4868	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	20	22
12044	ENST00000648160.1_1	ENST00000361209.6_5	chr9	119600422	119639543	AL157829.1	+	lncRNA	chr9	119187506	120177348	ASTN2	-	protein_coding	39121	opposite	5077_ID	chr9	119600423	119639543	39121	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	22
12125	ENST00000649237.1_3	ENST00000369005.6_4	chr10	123904620	123914691	AC063960.2	-	lncRNA	chr10	123748677	124014057	TACC2	+	protein_coding	10092	opposite	2356_ID	chr10	123904621	123914691	10071	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	22
12139	ENST00000649505.1_1	ENST00000389418.9_4	chr7	157779860	157782148	AC011899.3	+	lncRNA	chr7	157331749	158380515	PTPRN2	-	protein_coding	2288	opposite	1308_ID	chr7	157779861	157782148	2288	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	22
12297	ENST00000652809.1_4	ENST00000373946.7_3	chr20	34735265	34743052	AL121895.1	-	lncRNA	chr20	34680631	34820721	EPB41L1	+	protein_coding	8427	opposite	4769_ID	chr20	34735266	34743052	7787	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	22
12446	ENST00000656405.1_3	ENST00000355112.8_2	chr15	91354757	91358774	AC124248.2	-	lncRNA	chr15	91260576	91359396	BLM	+	protein_coding	4017	opposite	4002_ID	chr15	91354758	91358774	4017	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	22	22
12495	ENST00000657432.1_3	ENST00000405015.7_2	chr2	63044898	63046841	AC092567.2	-	lncRNA	chr2	62900985	63272732	EHBP1	+	protein_coding	1943	opposite	3103_ID	chr2	63044899	63046841	1943	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	22
12553	ENST00000658485.1_3	ENST00000355086.8_2	chr12	64493194	64524319	AC025576.3	-	lncRNA	chr12	64238479	64555997	SRGAP1	+	protein_coding	31125	opposite	2099_ID	chr12	64493195	64524319	31125	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	22
12613	ENST00000659404.1_3	ENST00000272203.8_6	chr1	204246028	204249491	AL592114.3	+	lncRNA	chr1	204187980	204329057	PLEKHA6	-	protein_coding	3463	opposite	5803_ID	chr1	204246029	204249491	3463	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
12675	ENST00000660893.1_1	ENST00000433197.4_4	chr17	62144978	62147630	AC005803.1	+	lncRNA	chr17	62116501	62207504	ERN1	-	protein_coding	2652	opposite	359_ID	chr17	62144979	62147630	2652	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	22
12749	ENST00000662545.1_3	ENST00000367662.5_2	chr1	176798263	176800977	AL031290.1	-	lncRNA	chr1	176432310	176814737	PAPPA2	+	protein_coding	2714	opposite	4516_ID	chr1	176798264	176800977	2714	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	22
12757	ENST00000662696.1_3	ENST00000615112.4_4	chr11	113135858	113144687	NCAM1-AS1	-	lncRNA	chr11	112831968	113149133	NCAM1	+	protein_coding	8896	opposite	9237_ID	chr11	113135859	113144687	8829	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	22
12804	ENST00000663650.1_1	ENST00000601538.5_3	chr11	70472545	70481763	SHANK2-AS1	+	lncRNA	chr11	70315539	70935808	SHANK2	-	protein_coding	9218	opposite	12058_ID	chr11	70472546	70481763	9218	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	22
12981	ENST00000667538.1_1	ENST00000510118.5_5	chr6	167065011	167069098	AL023775.2	+	lncRNA	chr6	166822875	167275999	RPS6KA2	-	protein_coding	4087	opposite	4494_ID	chr6	167065012	167069098	4087	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	22
13032	ENST00000668729.1_4	ENST00000672453.1_1	chr7	33832778	33842802	AC008080.4	-	lncRNA	chr7	33197271	33916792	BBS9	+	processed_transcript	10024	opposite	695_ID	chr7	33832779	33842802	10024	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	22
13046	ENST00000668932.1_3	ENST00000466387.5_3	chr2	79719829	79741026	CTNNA2-AS1	-	lncRNA	chr2	79412356	80875904	CTNNA2	+	protein_coding	21197	opposite	6741_ID	chr2	79719830	79741026	21197	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	5	22
13055	ENST00000669066.1_1	ENST00000601538.5_3	chr11	70732194	70742410	AP003783.1	+	lncRNA	chr11	70315539	70935808	SHANK2	-	protein_coding	10216	opposite	6273_ID	chr11	70732195	70742410	10216	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	22
13143	ENST00000671070.1_1	ENST00000631589.1_3	chr10	21815496	21815792	AL358780.1	+	lncRNA	chr10	21813603	22032559	MLLT10	+	protein_coding	296	same	5462_ID	chr10	21815497	21815792	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
13149	ENST00000671212.1_3	ENST00000406610.7_4	chr2	205533585	205543421	AC007736.1	-	lncRNA	chr2	205410197	206484886	PARD3B	+	protein_coding	9836	opposite	646_ID	chr2	205533586	205543421	9836	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	22
30841	ENST00000410432.1	ENST00000638517.1_4	chr7	65860177	65860273	RNU6-96P	+	snRNA	chr7	65853311	65956603	LINC00174	-	lncRNA	96	opposite	11645_ID	chr7	65860178	65860273	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	22	22
46301	ENST00000448857.1_1	ENST00000643789.1_4	chr9	99008743	99012675	HSD17B3-AS1	+	lncRNA	chr9	98997633	99114340	AL160269.1	-	nonsense_mediated_decay	3932	opposite	7307_ID	chr9	99008744	99012675	3932	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	17	22
70071	ENST00000527021.2_3	ENST00000533256.5_3	chr11	708563	727047	AP006621.4	-	lncRNA	chr11	706116	727724	EPS8L2	+	protein_coding	18484	opposite	6319_ID	chr11	708564	727047	18484	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	3	22
120301	ENST00000647653.1_3	ENST00000555818.5_2	chr14	72052985	72057071	AC004974.1	-	lncRNA	chr14	71996041	72207946	SIPA1L1	+	protein_coding	4086	opposite	208_ID	chr14	72052986	72057071	4086	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	22
120681	ENST00000648345.1_3	ENST00000556551.2_1	chr14	74340391	74352138	AC005520.5	-	lncRNA	chr14	74318673	74398981	AC005520.1	+	nonsense_mediated_decay	11867	opposite	306_ID	chr14	74340392	74352138	11747	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	22
350	ENST00000304402.6_2	ENST00000297135.9_4	chr7	107110501	107116129	GPR22	+	protein_coding	chr7	106841816	107204365	COG5	-	protein_coding	5667	opposite	7162_ID	chr7	107110502	107116129	5628	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	21
581	ENST00000333845.11_2	ENST00000422437.5_1	chr6	32132371	32136058	EGFL8	+	protein_coding	chr6	32121998	32139755	PPT2-EGFL8	+	nonsense_mediated_decay	3687	same	6873_ID	chr6	32132372	32136058	3687	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	21
619	ENST00000339431.9_2	ENST00000448002.6_3	chr7	102553446	102585558	LRRC17	+	protein_coding	chr7	102453676	102715286	FBXL13	-	nonsense_mediated_decay	32112	opposite	7855_ID	chr7	102553447	102585558	32112	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	21
779	ENST00000362196.1	ENST00000587152.6_5	chr19	46142251	46142345	MIR330	-	miRNA	chr19	46112657	46148860	EML2	-	protein_coding	94	same	8324_ID	chr19	46142252	46142345	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	21
967	ENST00000363284.1	ENST00000426105.7_4	chr1	31408534	31408620	SNORD103A	-	snoRNA	chr1	31404352	31538564	PUM1	-	protein_coding	86	same	12222_ID	chr1	31408535	31408620	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	21
970	ENST00000363305.1	ENST00000358595.10_6	chr1	150785066	150785174	RNU6-1309P	-	snRNA	chr1	150782188	150849075	ARNT	-	protein_coding	108	same	10998_ID	chr1	150785067	150785174	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	21
972	ENST00000363311.1	ENST00000426105.7_4	chr1	31441010	31441083	SNORD85	-	snoRNA	chr1	31404352	31538564	PUM1	-	protein_coding	73	same	12455_ID	chr1	31441011	31441083	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	21
1053	ENST00000363724.1	ENST00000367186.7_3	chr6	155146309	155146413	RNU6-824P	-	snRNA	chr6	155054511	155155378	SCAF8	+	protein_coding	104	opposite	11532_ID	chr6	155146310	155146413	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	21
1143	ENST00000364207.1	ENST00000564754.7_8	chr15	42719788	42719895	RNU6-188P	-	snRNA	chr15	42705020	42783339	ZNF106	-	protein_coding	107	same	11058_ID	chr15	42719789	42719895	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	21
1151	ENST00000364270.1	ENST00000361209.6_5	chr9	119959396	119959699	RN7SKP128	+	misc_RNA	chr9	119187506	120177348	ASTN2	-	protein_coding	303	opposite	9780_ID	chr9	119959397	119959699	303	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	21
1218	ENST00000364600.1	ENST00000322313.9_4	chr2	128556476	128556572	RNY4P7	-	misc_RNA	chr2	128458600	128568745	WDR33	-	protein_coding	96	same	11864_ID	chr2	128556477	128556572	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
1247	ENST00000364746.1	ENST00000397111.9_5	chr11	3069588	3069751	RNU1-91P	-	snRNA	chr11	3022151	3078843	CARS1	-	protein_coding	163	same	10610_ID	chr11	3069589	3069751	163	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
1335	ENST00000365237.1	ENST00000426105.7_4	chr1	31421963	31422049	SNORD103B	-	snoRNA	chr1	31404352	31538564	PUM1	-	protein_coding	86	same	12223_ID	chr1	31421964	31422049	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	21
1394	ENST00000365642.1	ENST00000261483.4_1	chr5	109035200	109035535	RN7SKP230	-	misc_RNA	chr5	109025066	109202879	MAN2A1	+	protein_coding	335	opposite	9836_ID	chr5	109035201	109035535	335	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
1468	ENST00000370589.7_4	ENST00000370596.5_1	chr1	85483764	85514183	MCOLN3	-	protein_coding	chr1	85464829	85598821	DNAI3	+	protein_coding	30419	opposite	7931_ID	chr1	85483765	85514183	30419	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
1553	ENST00000376620.3_3	ENST00000433342.5_2	chr1	11837133	11839676	C1orf167-AS1	-	lncRNA	chr1	11821843	11849641	C1orf167	+	protein_coding	2543	opposite	6495_ID	chr1	11837134	11839676	2543	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	21
1759	ENST00000384154.1	ENST00000262077.3_5	chr6	17619763	17619865	RNU6-190P	+	snRNA	chr6	17615267	17707156	NUP153	-	protein_coding	102	opposite	11059_ID	chr6	17619764	17619865	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	21
1807	ENST00000384289.1	ENST00000409085.9_6	chr2	69747174	69747306	SNORA36C	-	snoRNA	chr2	69685128	69870871	AAK1	-	protein_coding	132	same	12171_ID	chr2	69747175	69747306	132	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	21
1874	ENST00000384505.1	ENST00000370521.8_2	chr1	89282461	89282568	RNU6-125P	+	snRNA	chr1	89149955	89301938	PKN2	+	protein_coding	107	same	10954_ID	chr1	89282462	89282568	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	21
1890	ENST00000384538.1	ENST00000361209.6_5	chr9	119943344	119943479	SNORA70C	-	snoRNA	chr9	119187506	120177348	ASTN2	-	protein_coding	135	same	12197_ID	chr9	119943345	119943479	135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	21
1908	ENST00000384582.1	ENST00000304623.13_7	chr5	11027311	11027419	RNU6-429P	+	snRNA	chr5	10971947	11904558	CTNND2	-	protein_coding	108	opposite	11230_ID	chr5	11027312	11027419	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	21
2068	ENST00000384914.1	ENST00000409251.7_3	chr2	220158832	220158922	MIR153-1	-	miRNA	chr2	220154344	220174220	PTPRN	-	protein_coding	90	same	8108_ID	chr2	220158833	220158922	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	21
2079	ENST00000384960.1	ENST00000462942.3_3	chr9	140732870	140732968	MIR602	+	miRNA	chr9	140638515	140764468	EHMT1	+	nonsense_mediated_decay	98	same	9003_ID	chr9	140732871	140732968	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	21
2229	ENST00000385256.1	ENST00000373624.6_4	chr9	126164803	126164882	MIR601	-	miRNA	chr9	126141932	126692386	DENND1A	-	protein_coding	79	same	9002_ID	chr9	126164804	126164882	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	21
2350	ENST00000390804.1	ENST00000265637.8_4	chr11	68273550	68273634	AP000807.1	-	miRNA	chr11	68228219	68382802	PPP6R3	+	protein_coding	84	opposite	6031_ID	chr11	68273551	68273634	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
2436	ENST00000391180.1	ENST00000354212.9_5	chr7	78972581	78972688	RNU6-530P	-	snRNA	chr7	77646371	79082983	MAGI2	-	protein_coding	107	same	11313_ID	chr7	78972582	78972688	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
2441	ENST00000391208.1	ENST00000250617.7_4	chrX	135856157	135856264	RNU6-972P	+	snRNA	chrX	135747708	135863091	ARHGEF6	-	protein_coding	107	opposite	11646_ID	chrX	135856158	135856264	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
2450	ENST00000391243.1	ENST00000354212.9_5	chr7	78659555	78659661	RNU6-337P	+	snRNA	chr7	77646371	79082983	MAGI2	-	protein_coding	106	opposite	11162_ID	chr7	78659556	78659661	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
2453	ENST00000391295.1	ENST00000310343.13_4	chr11	128863131	128863235	RNU6-876P	-	snRNA	chr11	128834954	129062093	ARHGAP32	-	protein_coding	104	same	11576_ID	chr11	128863132	128863235	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	21
2554	ENST00000401105.1	ENST00000367759.8_4	chr1	171010487	171010581	BX284613.1	-	miRNA	chr1	170904611	171033906	MROH9	+	protein_coding	94	opposite	6452_ID	chr1	171010488	171010581	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	21
2563	ENST00000401149.2	ENST00000406316.6_5	chr2	51026101	51026193	AC007560.2	-	miRNA	chr2	50145642	51259699	NRXN1	-	protein_coding	92	same	604_ID	chr2	51026102	51026193	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	21
2575	ENST00000401192.1	ENST00000406316.6_5	chr2	51170429	51170524	AC007682.2	-	miRNA	chr2	50145642	51259699	NRXN1	-	protein_coding	95	same	634_ID	chr2	51170430	51170524	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
2607	ENST00000401316.1	ENST00000646379.1_5	chr3	10436172	10436246	MIR885	-	miRNA	chr3	10369691	10749692	ATP2B2	-	protein_coding	74	same	9096_ID	chr3	10436173	10436246	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	21
2616	ENST00000401372.1	ENST00000406316.6_5	chr2	50923309	50923400	AC009234.2	-	miRNA	chr2	50145642	51259699	NRXN1	-	protein_coding	91	same	924_ID	chr2	50923310	50923400	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	21
2648	ENST00000408088.1	ENST00000409535.6_1	chr3	51645453	51645578	RNU6ATAC29P	-	snRNA	chr3	51575595	51702683	RAD54L2	+	protein_coding	125	opposite	11673_ID	chr3	51645454	51645578	125	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
2677	ENST00000408164.1	ENST00000327979.8_5	chr20	49231172	49231322	MIR1302-5	-	miRNA	chr20	49202644	49308079	RIPOR3	-	protein_coding	150	same	8071_ID	chr20	49231173	49231322	150	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	21
2695	ENST00000408230.1	ENST00000310758.8_3	chr7	37145127	37145215	AC009196.1	-	miRNA	chr7	36893965	37488852	ELMO1	-	protein_coding	88	same	918_ID	chr7	37145128	37145215	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	21
2702	ENST00000408252.1	ENST00000466387.5_3	chr2	80471747	80471843	AC016670.1	+	miRNA	chr2	79412356	80875904	CTNNA2	+	protein_coding	96	same	1548_ID	chr2	80471748	80471843	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	21
2732	ENST00000408332.1	ENST00000261726.11_2	chr12	111511771	111511893	AC002978.1	+	miRNA	chr12	111471968	111788358	CUX2	+	protein_coding	122	same	76_ID	chr12	111511772	111511893	122	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
2764	ENST00000408398.1	ENST00000310758.8_3	chr7	36958961	36959037	MIR1200	-	miRNA	chr7	36893965	37488852	ELMO1	-	protein_coding	76	same	7976_ID	chr7	36958962	36959037	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	21
2787	ENST00000408459.1	ENST00000261726.11_2	chr12	111740603	111740703	AC002979.1	+	miRNA	chr12	111471968	111788358	CUX2	+	protein_coding	100	same	77_ID	chr12	111740604	111740703	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	21
2864	ENST00000408633.1	ENST00000543106.6_2	chr12	113132838	113132981	MIR1302-1	-	miRNA	chr12	113012900	113334719	RPH3A	+	protein_coding	143	opposite	8067_ID	chr12	113132839	113132981	143	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
2917	ENST00000408742.1	ENST00000310974.8_4	chr7	34980371	34980446	MIR548N	-	miRNA	chr7	34968487	35077653	DPY19L1	-	protein_coding	75	same	8910_ID	chr7	34980372	34980446	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	21
2957	ENST00000408845.2	ENST00000328252.4_2	chr9	118961268	118961358	AL353141.1	-	miRNA	chr9	118916069	119164600	PAPPA	+	protein_coding	90	opposite	5234_ID	chr9	118961269	118961358	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
3068	ENST00000410407.1	ENST00000265637.8_4	chr11	68273039	68273119	AP000807.2	-	miRNA	chr11	68228219	68382802	PPP6R3	+	protein_coding	80	opposite	6032_ID	chr11	68273040	68273119	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
3099	ENST00000410481.1	ENST00000361209.6_5	chr9	120039263	120039565	RN7SKP125	+	misc_RNA	chr9	119187506	120177348	ASTN2	-	protein_coding	302	opposite	9778_ID	chr9	120039264	120039565	302	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
3122	ENST00000410604.1	ENST00000272427.11_6	chr2	72948934	72949132	RNU2-39P	+	snRNA	chr2	72403112	73053162	EXOC6B	-	protein_coding	198	opposite	10636_ID	chr2	72948935	72949132	198	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	21
3127	ENST00000410629.1	ENST00000332231.9_3	chr11	948420	948524	RNU6-1025P	+	snRNA	chr11	925808	1012245	AP2A2	+	protein_coding	104	same	10777_ID	chr11	948421	948524	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
3160	ENST00000410790.1	ENST00000373624.6_4	chr9	126347662	126347736	AL161790.1	-	miRNA	chr9	126141932	126692386	DENND1A	-	protein_coding	74	same	5173_ID	chr9	126347663	126347736	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	21
3165	ENST00000410818.1	ENST00000381414.8_4	chr16	19509931	19510069	RNU4-46P	+	snRNA	chr16	19422044	19510435	TMC5	+	protein_coding	138	same	10683_ID	chr16	19509932	19510069	138	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	21	21
3184	ENST00000410937.1	ENST00000310758.8_3	chr7	37390746	37390846	RNU6-565P	+	snRNA	chr7	36893965	37488852	ELMO1	-	protein_coding	100	opposite	11342_ID	chr7	37390747	37390846	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
3275	ENST00000411512.2_3	ENST00000328090.9_3	chr10	5754136	5786030	AL365356.1	-	lncRNA	chr10	5726800	5805703	TASOR2	+	protein_coding	31894	opposite	5543_ID	chr10	5754137	5786030	31894	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	21
3277	ENST00000411616.1_1	ENST00000354212.9_5	chr7	78638303	78641593	MAGI2-AS2	+	lncRNA	chr7	77646371	79082983	MAGI2	-	protein_coding	3290	opposite	7910_ID	chr7	78638304	78641593	3290	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
3289	ENST00000411847.1_1	ENST00000284776.11_4	chr4	186509062	186515157	AC093797.1	+	lncRNA	chr4	186506597	186877522	SORBS2	-	protein_coding	6095	opposite	3245_ID	chr4	186509063	186515157	6095	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	21
3398	ENST00000414538.1_1	ENST00000381685.10_4	chr2	10729291	10744956	AC007314.1	+	lncRNA	chr2	10710879	10830101	NOL10	-	protein_coding	15665	opposite	542_ID	chr2	10729292	10744956	15665	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	21
3435	ENST00000415176.1_3	ENST00000397412.8_2	chr16	1675628	1676161	Z97652.1	-	lncRNA	chr16	1662360	1727909	CRAMP1	+	protein_coding	533	opposite	12969_ID	chr16	1675629	1676161	533	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	21
3499	ENST00000417012.5_3	ENST00000466387.5_3	chr2	80515475	80531518	LRRTM1	-	nonsense_mediated_decay	chr2	79412356	80875904	CTNNA2	+	protein_coding	16402	opposite	7872_ID	chr2	80515476	80531518	16043	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	21
3541	ENST00000418250.1_1	ENST00000361209.6_5	chr9	119266561	119324572	ASTN2-AS1	+	lncRNA	chr9	119187506	120177348	ASTN2	-	protein_coding	58011	opposite	6359_ID	chr9	119266562	119324572	58011	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	21
3560	ENST00000418621.1_3	ENST00000466387.5_3	chr2	80255137	80257677	AC016716.1	-	lncRNA	chr2	79412356	80875904	CTNNA2	+	protein_coding	2540	opposite	1555_ID	chr2	80255138	80257677	2540	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	21
3590	ENST00000419591.2_4	ENST00000646379.1_5	chr3	10667699	10670992	ATP2B2-IT2	-	lncRNA	chr3	10369691	10749692	ATP2B2	-	protein_coding	3293	same	6373_ID	chr3	10667700	10670992	3293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
3623	ENST00000420269.1_1	ENST00000360835.9_5	chr22	43608679	43609667	SCUBE1-AS2	+	lncRNA	chr22	43593285	43739378	SCUBE1	-	protein_coding	988	opposite	12017_ID	chr22	43608680	43609667	988	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	21
3638	ENST00000420801.1_3	ENST00000351030.7_1	chr9	131231235	131235291	ODF2-AS1	-	lncRNA	chr9	131218284	131263571	ODF2	+	protein_coding	4056	opposite	9325_ID	chr9	131231236	131235291	4056	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	21
3687	ENST00000421943.1_3	ENST00000413052.6_1	chr1	113236309	113239243	AL603832.1	-	lncRNA	chr1	113217042	113243368	MOV10	+	protein_coding	2934	opposite	5832_ID	chr1	113236310	113239243	2934	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	21
3747	ENST00000423329.1_1	ENST00000646102.1_3	chr13	111774998	111796611	ARHGEF7-IT1	+	lncRNA	chr13	111767799	111958074	ARHGEF7	+	protein_coding	21613	same	6340_ID	chr13	111774999	111796611	21613	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
3758	ENST00000423715.1_1	ENST00000361209.6_5	chr9	119330727	119348607	AL133284.1	+	lncRNA	chr9	119187506	120177348	ASTN2	-	protein_coding	18693	opposite	4834_ID	chr9	119330728	119348607	17880	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	21
3765	ENST00000423942.1_1	ENST00000373624.6_4	chr9	126498715	126514220	AL390774.2	+	lncRNA	chr9	126141932	126692386	DENND1A	-	protein_coding	15505	opposite	5559_ID	chr9	126498716	126514220	15505	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	21
3794	ENST00000424657.1_3	ENST00000449969.5_6	chr1	2423738	2424697	AL139246.1	-	lncRNA	chr1	2398897	2436965	PLCH2	+	protein_coding	959	opposite	5023_ID	chr1	2423739	2424697	959	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	21
3894	ENST00000428298.1_1	ENST00000354212.9_5	chr7	78569165	78570211	MAGI2-AS1	+	lncRNA	chr7	77646371	79082983	MAGI2	-	protein_coding	1046	opposite	7909_ID	chr7	78569166	78570211	1046	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
3927	ENST00000429151.2_4	ENST00000395386.7_4	chr8	133850361	133856543	AF230666.1	-	lncRNA	chr8	133787633	133861052	PHF20L1	+	protein_coding	6182	opposite	4403_ID	chr8	133850362	133856543	6182	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	21
3958	ENST00000430048.1_3	ENST00000449576.6_4	chr2	11861744	11864348	AC012456.1	-	lncRNA	chr2	11817720	11965013	LPIN1	+	protein_coding	2604	opposite	1387_ID	chr2	11861745	11864348	2604	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
4014	ENST00000431500.2_4	ENST00000449576.6_4	chr2	11881122	11885427	AC012456.2	-	lncRNA	chr2	11817720	11965013	LPIN1	+	protein_coding	4305	opposite	1388_ID	chr2	11881123	11885427	4305	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
4065	ENST00000432981.2_1	ENST00000383836.8_7	chr3	9258578	9261192	SRGAP3-AS3	+	lncRNA	chr3	9022274	9291330	SRGAP3	-	protein_coding	2614	opposite	12543_ID	chr3	9258579	9261192	2614	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
4102	ENST00000434147.1_1	ENST00000322680.7_5	chr10	75573275	75574495	AC022400.1	+	lncRNA	chr10	75572258	75634349	CAMK2G	-	protein_coding	1220	opposite	1854_ID	chr10	75573276	75574495	1220	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	21	21
4137	ENST00000435037.1_3	ENST00000646102.1_3	chr13	111796651	111797080	ARHGEF7-AS1	-	lncRNA	chr13	111767799	111958074	ARHGEF7	+	protein_coding	429	opposite	6339_ID	chr13	111796652	111797080	429	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
4144	ENST00000435175.1_1	ENST00000449576.6_4	chr2	11821586	11823454	AC106875.1	+	lncRNA	chr2	11817720	11965013	LPIN1	+	protein_coding	1869	same	3671_ID	chr2	11821587	11823454	1868	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
4248	ENST00000438048.1_3	ENST00000328252.4_2	chr9	119048107	119051048	PAPPA-AS2	-	lncRNA	chr9	118916069	119164600	PAPPA	+	protein_coding	2941	opposite	9499_ID	chr9	119048108	119051048	2941	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	21
4326	ENST00000440152.1_3	ENST00000646379.1_5	chr3	10607938	10612059	ATP2B2-IT1	-	lncRNA	chr3	10369691	10749692	ATP2B2	-	protein_coding	4121	same	6372_ID	chr3	10607939	10612059	4121	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
4328	ENST00000440321.1_1	ENST00000538366.5_3	chr1	169993217	169993824	AL356475.1	+	lncRNA	chr1	169890471	170043879	KIFAP3	-	protein_coding	607	opposite	5387_ID	chr1	169993218	169993824	607	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	21
4401	ENST00000442305.1_3	ENST00000449969.5_6	chr1	2424875	2425918	AL139246.4	-	lncRNA	chr1	2398897	2436965	PLCH2	+	protein_coding	1043	opposite	5024_ID	chr1	2424876	2425918	1043	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	21
4416	ENST00000442534.2_3	ENST00000650792.2_2	chr3	45525465	45551037	LARS2-AS1	-	lncRNA	chr3	45430052	45596218	LARS2	+	protein_coding	25572	opposite	7511_ID	chr3	45525466	45551037	25572	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	21
4429	ENST00000442936.1_3	ENST00000346085.10_6	chr6	157428860	157440840	AL049820.1	-	lncRNA	chr6	157097153	157531913	ARID1B	+	protein_coding	11980	opposite	4638_ID	chr6	157428861	157440840	11980	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	21
4508	ENST00000445708.1_1	ENST00000381309.8_5	chr9	6902669	6978859	AL513412.1	+	lncRNA	chr9	6757972	7175648	KDM4C	+	protein_coding	76190	same	5710_ID	chr9	6902670	6978859	76190	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	21
4550	ENST00000446730.3_4	ENST00000322680.7_5	chr10	75601590	75606873	AC022400.2	+	lncRNA	chr10	75572258	75634349	CAMK2G	-	protein_coding	5283	opposite	1855_ID	chr10	75601591	75606873	5283	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	21
4666	ENST00000450136.2_2	ENST00000361209.6_5	chr9	119449583	119463578	TRIM32	+	protein_coding	chr9	119187506	120177348	ASTN2	-	protein_coding	13996	opposite	12779_ID	chr9	119449584	119463578	13995	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	21
4686	ENST00000450920.1_1	ENST00000383836.8_7	chr3	9234218	9236137	SRGAP3-AS2	+	lncRNA	chr3	9022274	9291330	SRGAP3	-	protein_coding	1961	opposite	12542_ID	chr3	9234219	9236137	1919	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
4701	ENST00000451135.1_1	ENST00000265417.7_5	chr6	46871207	46876815	ADGRF5-AS1	+	lncRNA	chr6	46820335	46922680	ADGRF5	-	protein_coding	5608	opposite	4355_ID	chr6	46871208	46876815	5608	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	21
4752	ENST00000452336.1_1	ENST00000327979.8_5	chr20	49262007	49276828	RIPOR3-AS1	+	lncRNA	chr20	49202644	49308079	RIPOR3	-	protein_coding	16805	opposite	9753_ID	chr20	49262008	49276828	14821	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
4758	ENST00000452467.1_1	ENST00000380516.7_5	chr15	59182165	59186281	AC025918.1	+	lncRNA	chr15	59171248	59225878	SLTM	-	protein_coding	4116	opposite	2114_ID	chr15	59182166	59186281	4116	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	21
4959	ENST00000457851.1_2	ENST00000403045.6_3	chr2	70914273	70918956	AC005234.1	+	lncRNA	chr2	70834749	70995330	ADD2	-	nonsense_mediated_decay	4683	opposite	259_ID	chr2	70914274	70918956	4683	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	21
4963	ENST00000458025.1_1	ENST00000373624.6_4	chr9	126254162	126255435	AL445489.1	+	lncRNA	chr9	126141932	126692386	DENND1A	-	protein_coding	1273	opposite	5628_ID	chr9	126254163	126255435	1273	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	21
4964	ENST00000458128.3_3	ENST00000343533.9_1	chrX	77223445	77225135	PGAM4	-	protein_coding	chrX	77166152	77305886	ATP7A	+	protein_coding	1690	opposite	9542_ID	chrX	77223446	77225135	1690	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
4978	ENST00000458463.1_1	ENST00000360835.9_5	chr22	43671960	43679836	SCUBE1-AS1	+	lncRNA	chr22	43593285	43739378	SCUBE1	-	protein_coding	7876	opposite	12016_ID	chr22	43671961	43679836	7876	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	21
5019	ENST00000458875.1	ENST00000418814.7_5	chr6	71222996	71223059	RNU7-48P	+	snRNA	chr6	71123210	71270877	FAM135A	+	protein_coding	63	same	11786_ID	chr6	71222997	71223059	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	21
5021	ENST00000458882.1	ENST00000366534.9_4	chr1	244752847	244752946	AC099757.1	-	miRNA	chr1	244624574	244803806	CATSPERE	+	protein_coding	99	opposite	3390_ID	chr1	244752848	244752946	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	21
5033	ENST00000458985.1	ENST00000615112.4_4	chr11	112848074	112848142	RNU7-187P	+	snRNA	chr11	112831968	113149133	NCAM1	+	protein_coding	68	same	11754_ID	chr11	112848075	112848142	68	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	21
5108	ENST00000459448.1	ENST00000646379.1_5	chr3	10523646	10523709	AC090841.1	+	miRNA	chr3	10369691	10749692	ATP2B2	-	protein_coding	63	opposite	2941_ID	chr3	10523647	10523709	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	21
5130	ENST00000459548.1	ENST00000374168.7_4	chr1	26881032	26881084	MIR1976	+	miRNA	chr1	26856251	26901516	RPS6KA1	+	protein_coding	52	same	8160_ID	chr1	26881033	26881084	52	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	21
5136	ENST00000459579.1	ENST00000614237.1_1	chr17	7480128	7480270	SNORD10	+	snoRNA	chr17	7466603	7482033	SENP3-EIF4A1	+	nonsense_mediated_decay	142	same	12217_ID	chr17	7480129	7480270	142	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	21
5214	ENST00000464659.1_3	ENST00000427190.6_4	chrX	30718114	30742291	GK-AS1	-	lncRNA	chrX	30671539	30749579	GK	+	protein_coding	24177	opposite	7127_ID	chrX	30718115	30742291	24177	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	21
5230	ENST00000465742.2_1	ENST00000615603.4_5	chr3	71338919	71355004	FOXP1-AS1	+	lncRNA	chr3	71003865	71633140	FOXP1	-	protein_coding	16085	opposite	7066_ID	chr3	71338920	71355004	16085	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	5	21
5340	ENST00000472913.1_1	ENST00000494598.5_5	chr3	155203591	155204910	PLCH1-AS2	+	lncRNA	chr3	155093368	155394205	PLCH1	-	protein_coding	1319	opposite	9577_ID	chr3	155203592	155204910	1319	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	21
5378	ENST00000475196.1_1	ENST00000494598.5_5	chr3	155166972	155175542	PLCH1-AS1	+	lncRNA	chr3	155093368	155394205	PLCH1	-	protein_coding	8570	opposite	9576_ID	chr3	155166973	155175542	8570	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	21
5434	ENST00000478845.2_1	ENST00000260356.6_2	chr15	39878761	39879494	AC037198.1	+	lncRNA	chr15	39873279	39891667	THBS1	+	protein_coding	733	same	2277_ID	chr15	39878762	39879494	733	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	21
5625	ENST00000492589.2	ENST00000409085.9_6	chr2	69743882	69744176	RN7SL604P	+	misc_RNA	chr2	69685128	69870871	AAK1	-	protein_coding	294	opposite	10300_ID	chr2	69743883	69744176	294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	21
5697	ENST00000497961.1_1	ENST00000427190.6_4	chrX	30716323	30740049	AC112496.1	+	lncRNA	chrX	30671539	30749579	GK	+	protein_coding	23726	same	3825_ID	chrX	30716324	30740049	23726	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	21
5801	ENST00000503991.1	ENST00000508803.6_3	chr4	1976362	1976487	SCARNA22	+	snoRNA	chr4	1873119	1983919	NSD2	+	protein_coding	125	same	11994_ID	chr4	1976363	1976487	125	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	21
5833	ENST00000504911.1_3	ENST00000502692.5_1	chr11	66326336	66327855	AP002748.2	-	lncRNA	chr11	66313865	66330797	ACTN3	+	protein_coding	1519	opposite	6195_ID	chr11	66326337	66327855	1519	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	21
5840	ENST00000505091.1_3	ENST00000504592.5_3	chr4	102898050	102958060	AP002075.1	-	lncRNA	chr4	102341117	102995969	BANK1	+	protein_coding	60010	opposite	6177_ID	chr4	102898051	102958060	60010	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	21
5841	ENST00000505153.2_3	ENST00000527524.8_3	chr11	120738641	120765506	AP004147.1	-	lncRNA	chr11	120382456	120859615	GRIK4	+	protein_coding	26865	opposite	6276_ID	chr11	120738642	120765506	26865	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	21
5845	ENST00000505267.2_3	ENST00000322350.10_3	chr5	38345448	38346653	EGFLAM-AS3	-	lncRNA	chr5	38258660	38465582	EGFLAM	+	protein_coding	1205	opposite	6876_ID	chr5	38345449	38346653	1205	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	21
6084	ENST00000512496.1_3	ENST00000322350.10_3	chr5	38282365	38291088	EGFLAM-AS4	-	lncRNA	chr5	38258660	38465582	EGFLAM	+	protein_coding	8723	opposite	6877_ID	chr5	38282366	38291088	8723	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
6282	ENST00000516148.1	ENST00000397053.6_3	chr10	11965179	11965287	RNU6-1095P	+	snRNA	chr10	11962021	12085169	UPF2	-	protein_coding	108	opposite	10826_ID	chr10	11965180	11965287	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	21
6299	ENST00000516182.1	ENST00000249923.7_3	chr11	14500437	14500499	RNU7-49P	+	snRNA	chr11	14479051	14521398	COPB1	-	protein_coding	62	opposite	11787_ID	chr11	14500438	14500499	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	21
6315	ENST00000516222.1	ENST00000466387.5_3	chr2	79863987	79864089	RNU6-561P	-	snRNA	chr2	79412356	80875904	CTNNA2	+	protein_coding	102	opposite	11337_ID	chr2	79863988	79864089	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	21
6373	ENST00000516397.1	ENST00000651934.1_3	chr12	56746170	56746234	RNU7-40P	-	snRNA	chr12	56735396	56753951	STAT2	-	retained_intron	64	same	11779_ID	chr12	56746171	56746234	64	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	21
6386	ENST00000516436.1	ENST00000503326.6_4	chr3	139107118	139107206	RNU6-736P	+	snRNA	chr3	139072787	139108513	COPB2	-	protein_coding	88	opposite	11465_ID	chr3	139107119	139107206	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
6497	ENST00000516760.1	ENST00000262133.11_2	chr16	53477139	53477244	RNU6-1153P	-	snRNA	chr16	53468382	53525560	RBL2	+	protein_coding	105	opposite	10859_ID	chr16	53477140	53477244	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	21
6712	ENST00000517384.1_3	ENST00000240123.11_2	chr8	22423509	22424684	AC037459.3	-	lncRNA	chr8	22409207	22433301	SORBS3	+	protein_coding	1175	opposite	2282_ID	chr8	22423510	22424684	1175	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	21
6837	ENST00000521025.1_1	ENST00000308511.8_1	chr8	22471420	22474170	AC037459.2	-	lncRNA	chr8	22462144	22479027	CCAR2	+	protein_coding	2750	opposite	2281_ID	chr8	22471421	22474170	2750	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	21
6978	ENST00000526456.1_1	ENST00000299441.5_4	chr11	6642681	6643553	AC091564.4	+	lncRNA	chr11	6642560	6677040	DCHS1	-	protein_coding	872	opposite	3005_ID	chr11	6642682	6643553	872	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	21	21
6979	ENST00000526566.2_1	ENST00000359930.8_3	chr20	46306644	46315041	AL354813.1	+	lncRNA	chr20	46285655	46415330	SULF2	-	protein_coding	8397	opposite	5287_ID	chr20	46306645	46315041	8397	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	21
7027	ENST00000527849.5_3	ENST00000650785.1_1	chr1	146646929	146714700	FMO5	-	nonsense_mediated_decay	chr1	146644940	146767415	AC242426.2	+	lncRNA	67771	opposite	7048_ID	chr1	146646930	146714700	67771	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
7290	ENST00000539532.1_3	ENST00000643940.1_4	chr12	130904079	130905564	AC063926.1	-	lncRNA	chr12	130880721	131200826	RIMBP2	-	protein_coding	1485	same	2349_ID	chr12	130904080	130905564	1485	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	21
7323	ENST00000541870.1_1	ENST00000355086.8_2	chr12	64272566	64273254	AC079866.2	+	lncRNA	chr12	64238479	64555997	SRGAP1	+	protein_coding	688	same	2683_ID	chr12	64272567	64273254	688	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
7570	ENST00000553322.1_3	ENST00000335750.7_2	chr14	80128008	80257606	AC008056.1	-	lncRNA	chr14	78636715	80334634	NRXN3	+	protein_coding	129598	opposite	684_ID	chr14	80128009	80257606	129598	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	21
7644	ENST00000555524.1_3	ENST00000330634.11_1	chr14	105156427	105157621	AL583722.3	-	lncRNA	chr14	105155942	105188872	INF2	+	protein_coding	1194	opposite	5719_ID	chr14	105156428	105157621	1194	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
7650	ENST00000555680.1_3	ENST00000335750.7_2	chr14	79169957	79176277	AC009396.3	-	lncRNA	chr14	78636715	80334634	NRXN3	+	protein_coding	6320	opposite	954_ID	chr14	79169958	79176277	6320	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	21
7651	ENST00000555850.1_3	ENST00000315266.9_1	chr14	67435754	67436533	AL049835.1	-	lncRNA	chr14	66974124	67648515	GPHN	+	protein_coding	779	opposite	4642_ID	chr14	67435755	67436533	779	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	21
7766	ENST00000558736.1_3	ENST00000649865.1_2	chr15	99423887	99436764	AC069029.1	-	lncRNA	chr15	99191767	99507759	IGF1R	+	protein_coding	12877	opposite	2465_ID	chr15	99423888	99436764	12877	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	21
7790	ENST00000559400.1_1	ENST00000268070.9_5	chr15	100516685	100520979	AC084855.2	+	lncRNA	chr15	100511641	100882180	ADAMTS17	-	protein_coding	4294	opposite	2769_ID	chr15	100516686	100520979	4294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	21
7824	ENST00000560094.1_3	ENST00000258886.13_2	chr15	78772398	78774162	AC027228.1	-	lncRNA	chr15	78730557	78793795	IREB2	+	protein_coding	1764	opposite	2195_ID	chr15	78772399	78774162	1764	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	21
7826	ENST00000560128.1_1	ENST00000268070.9_5	chr15	100666310	100669948	AC022710.1	+	lncRNA	chr15	100511641	100882180	ADAMTS17	-	protein_coding	3638	opposite	1900_ID	chr15	100666311	100669948	3638	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	21
7890	ENST00000561762.1_3	ENST00000381414.8_4	chr16	19488237	19499221	AC130456.3	-	lncRNA	chr16	19422044	19510435	TMC5	+	protein_coding	10984	opposite	4068_ID	chr16	19488238	19499221	10984	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	21
7994	ENST00000563565.1_3	ENST00000563314.5_1	chr16	28841932	28848521	AC133550.2	-	lncRNA	chr16	28834355	28848558	ATXN2L	+	retained_intron	6589	opposite	4111_ID	chr16	28841933	28848521	6589	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	21
7999	ENST00000563611.1_1	ENST00000256797.9_7	chr16	23723310	23724114	AC012317.1	+	lncRNA	chr16	23701630	23724543	ERN2	-	protein_coding	804	opposite	1363_ID	chr16	23723311	23724114	804	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
8062	ENST00000565073.1_1	ENST00000262133.11_2	chr16	53482659	53483502	AC007342.1	+	lncRNA	chr16	53468382	53525560	RBL2	+	protein_coding	843	same	548_ID	chr16	53482660	53483502	843	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	21
8240	ENST00000568635.1_3	ENST00000381414.8_4	chr16	19422050	19422984	AC130456.4	-	lncRNA	chr16	19422044	19510435	TMC5	+	protein_coding	934	opposite	4069_ID	chr16	19422051	19422984	934	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	21
8312	ENST00000570812.2	ENST00000379374.5_2	chrX	22072270	22072551	RN7SL436P	-	misc_RNA	chrX	22050442	22269427	PHEX	+	protein_coding	281	opposite	10180_ID	chrX	22072271	22072551	281	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	21
8429	ENST00000576752.1_1	ENST00000574951.5_3	chr17	4871289	4872117	AC004771.3	+	lncRNA	chr17	4871286	4889529	CAMTA2	-	nonsense_mediated_decay	828	opposite	164_ID	chr17	4871290	4872117	828	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	21	21
8444	ENST00000577227.1_3	ENST00000318217.10_4	chr17	30856025	30857067	AC079336.3	-	lncRNA	chr17	30819539	31204142	MYO1D	-	protein_coding	1042	same	2650_ID	chr17	30856026	30857067	1042	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	21
8473	ENST00000577381.1	ENST00000466387.5_3	chr2	80021395	80021507	AC096753.1	+	miRNA	chr2	79412356	80875904	CTNNA2	+	protein_coding	112	same	3295_ID	chr2	80021396	80021507	112	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	21
8504	ENST00000577550.1	ENST00000556155.5_3	chr12	57515444	57515545	AC023237.1	-	miRNA	chr12	57490123	57522883	STAT6	-	protein_coding	101	same	1939_ID	chr12	57515445	57515545	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
8588	ENST00000577943.1	ENST00000291906.5_2	chr9	131472058	131472318	RN7SL560P	+	misc_RNA	chr9	131464781	131483195	PKN3	+	protein_coding	260	same	10271_ID	chr9	131472059	131472318	260	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	21
8622	ENST00000578165.1	ENST00000662716.1_3	chr7	148427920	148428020	AC005229.1	-	miRNA	chr7	148395163	148498080	CUL1	+	protein_coding	100	opposite	257_ID	chr7	148427921	148428020	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
8657	ENST00000578391.1_1	ENST00000637651.1_3	chr18	5567128	5570941	AP005059.1	+	lncRNA	chr18	5392443	5630662	EPB41L3	-	nonsense_mediated_decay	3813	opposite	6281_ID	chr18	5567129	5570941	3813	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
8661	ENST00000578408.1_3	ENST00000318217.10_4	chr17	30836971	30850442	AC079336.2	-	lncRNA	chr17	30819539	31204142	MYO1D	-	protein_coding	13471	same	2648_ID	chr17	30836972	30850442	13471	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	21
8689	ENST00000578592.1	ENST00000222345.11_2	chr19	38690873	38691170	RN7SL663P	+	misc_RNA	chr19	38397847	38699009	SIPA1L3	+	protein_coding	297	same	10348_ID	chr19	38690874	38691170	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	21
8739	ENST00000578876.1	ENST00000646379.1_5	chr3	10371912	10371969	MIR378B	+	miRNA	chr3	10369691	10749692	ATP2B2	-	protein_coding	57	opposite	8402_ID	chr3	10371913	10371969	57	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	21
8755	ENST00000578969.1	ENST00000600132.5_2	chr19	4208219	4208530	RN7SL84P	+	misc_RNA	chr19	4183350	4224811	ANKRD24	+	protein_coding	311	same	10478_ID	chr19	4208220	4208530	311	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	21
8794	ENST00000579210.1	ENST00000475866.3_7	chr1	26674955	26675210	RN7SL490P	-	misc_RNA	chr1	26648188	26686571	CRYBG2	-	protein_coding	255	same	10222_ID	chr1	26674956	26675210	255	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	21
8998	ENST00000580385.1_1	ENST00000621189.4_3	chr8	145737949	145739056	AC084125.4	+	lncRNA	chr8	145736670	145743229	RECQL4	-	protein_coding	1107	opposite	2739_ID	chr8	145737950	145739056	1107	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	21
9175	ENST00000581352.1	ENST00000449576.6_4	chr2	11907569	11907651	MIR548S	+	miRNA	chr2	11817720	11965013	LPIN1	+	protein_coding	82	same	8915_ID	chr2	11907570	11907651	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	21
9196	ENST00000581491.1	ENST00000489711.6_4	chr3	121640944	121641029	AC072031.1	-	miRNA	chr3	121613247	121663035	SLC15A2	+	protein_coding	85	opposite	2497_ID	chr3	121640945	121641029	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	21
9238	ENST00000581768.1	ENST00000302850.10_5	chr19	7160430	7160506	AC010311.1	-	miRNA	chr19	7112275	7294425	INSR	-	protein_coding	76	same	1054_ID	chr19	7160431	7160506	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	21
9388	ENST00000582552.1	ENST00000646855.1_1	chr2	87929273	87929353	MIR4435-1	+	miRNA	chr2	87755006	88066878	AC133644.2	+	lncRNA	80	same	8534_ID	chr2	87929274	87929353	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
9448	ENST00000582846.1	ENST00000264649.10_2	chr17	40666205	40666325	MIR5010	+	miRNA	chr17	40610897	40674600	ATP6V0A1	+	protein_coding	120	same	8817_ID	chr17	40666206	40666325	120	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	20	21
9461	ENST00000582915.1_3	ENST00000379672.10_4	chr17	12893465	12893927	AC005277.1	-	lncRNA	chr17	12692814	12894960	ARHGAP44	+	protein_coding	462	opposite	266_ID	chr17	12893466	12893927	462	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	21	21
9500	ENST00000583156.1_3	ENST00000318217.10_4	chr17	30839886	30846368	AC079336.1	-	lncRNA	chr17	30819539	31204142	MYO1D	-	protein_coding	6482	same	2647_ID	chr17	30839887	30846368	6482	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	21
9564	ENST00000583520.1	ENST00000466387.5_3	chr2	79876419	79876485	MIR4264	-	miRNA	chr2	79412356	80875904	CTNNA2	+	protein_coding	66	opposite	8465_ID	chr2	79876420	79876485	66	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	21
9571	ENST00000583553.1	ENST00000361209.6_5	chr9	119861285	119861385	AL354981.1	+	miRNA	chr9	119187506	120177348	ASTN2	-	protein_coding	100	opposite	5307_ID	chr9	119861286	119861385	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	21
9673	ENST00000584117.1	ENST00000356865.11_3	chr15	26093893	26093972	MIR4715	-	miRNA	chr15	25922419	26108870	ATP10A	-	protein_coding	79	same	8703_ID	chr15	26093894	26093972	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
9691	ENST00000584219.1_1	ENST00000318217.10_4	chr17	30845970	30858510	AC079336.4	+	lncRNA	chr17	30819539	31204142	MYO1D	-	protein_coding	12540	opposite	2651_ID	chr17	30845971	30858510	12540	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	21
9727	ENST00000584406.1	ENST00000332231.9_3	chr11	951294	951364	AP006477.1	-	miRNA	chr11	925808	1012245	AP2A2	+	protein_coding	70	opposite	6315_ID	chr11	951295	951364	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
9978	ENST00000587660.1_1	ENST00000398339.5_3	chr18	53119763	53150171	TCF4-AS1	+	lncRNA	chr18	52895166	53303258	TCF4	-	protein_coding	30408	opposite	12643_ID	chr18	53119764	53150171	30408	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	21
10033	ENST00000589702.1_1	ENST00000242783.11_4	chr19	14569212	14570178	AC008569.2	+	lncRNA	chr19	14544117	14582671	PKN1	+	protein_coding	966	same	749_ID	chr19	14569213	14570178	966	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	21
10085	ENST00000591364.5_1	ENST00000643940.1_4	chr12	131143312	131153667	AC095350.1	+	lncRNA	chr12	130880721	131200826	RIMBP2	-	protein_coding	17892	opposite	3267_ID	chr12	131143313	131153667	10355	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
10172	ENST00000594299.1_1	ENST00000222345.11_2	chr19	38675015	38676905	AC011479.3	+	lncRNA	chr19	38397847	38699009	SIPA1L3	+	protein_coding	1890	same	1247_ID	chr19	38675016	38676905	1890	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	21
10247	ENST00000596786.1_3	ENST00000590333.5_3	chr19	55823396	55823863	AC020922.2	-	lncRNA	chr19	55793439	55823901	BRSK1	+	protein_coding	467	opposite	1761_ID	chr19	55823397	55823863	467	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	21	21
10266	ENST00000597192.1_1	ENST00000404537.6_5	chr2	220423804	220424348	AC009955.4	+	lncRNA	chr2	220415449	220436261	OBSL1	-	protein_coding	544	opposite	1011_ID	chr2	220423805	220424348	544	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	21
10282	ENST00000597630.2_4	ENST00000599589.5_3	chr19	42411856	42432668	ERFL	-	protein_coding	chr19	42399451	42434302	ARHGEF1	+	protein_coding	20812	opposite	6921_ID	chr19	42411857	42432668	20812	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	21
10302	ENST00000598146.1_1	ENST00000222345.11_2	chr19	38690475	38691574	AC011479.2	+	lncRNA	chr19	38397847	38699009	SIPA1L3	+	protein_coding	1099	same	1246_ID	chr19	38690476	38691574	1099	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	21
10330	ENST00000599092.1_3	ENST00000222345.11_2	chr19	38599139	38600173	AC011465.1	-	lncRNA	chr19	38397847	38699009	SIPA1L3	+	protein_coding	55656	opposite	1225_ID	chr19	38599140	38600173	1034	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	21
10417	ENST00000601752.1_1	ENST00000222345.11_2	chr19	38454492	38455430	AC008395.1	+	lncRNA	chr19	38397847	38699009	SIPA1L3	+	protein_coding	938	same	722_ID	chr19	38454493	38455430	938	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
10518	ENST00000602874.1_1	ENST00000556551.2_1	chr14	74371969	74372339	AC005520.3	+	lncRNA	chr14	74318673	74398981	AC005520.1	+	nonsense_mediated_decay	370	same	302_ID	chr14	74371970	74372339	370	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	21
10546	ENST00000603191.2_3	ENST00000346085.10_6	chr6	157097493	157099556	AL355297.3	-	lncRNA	chr6	157097153	157531913	ARID1B	+	protein_coding	2063	opposite	5324_ID	chr6	157097494	157099556	2063	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	21
10649	ENST00000605896.1_1	ENST00000274938.8_2	chr6	35188146	35192407	Z97832.2	-	lncRNA	chr6	35181732	35220856	SCUBE3	+	protein_coding	4261	opposite	12970_ID	chr6	35188147	35192407	4261	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
10667	ENST00000606114.1_1	ENST00000260600.9_5	chr2	25048478	25049586	AC012073.1	+	lncRNA	chr2	25042037	25142708	ADCY3	-	protein_coding	1108	opposite	1328_ID	chr2	25048479	25049586	1108	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	21
10672	ENST00000606152.1	ENST00000650785.1_1	chr1	146647180	146649319	RP11-337C18.9	+	antisense	chr1	146644940	146767415	AC242426.2	+	lncRNA	2139	same	11892_ID	chr1	146647181	146649319	2139	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
10690	ENST00000606281.1	ENST00000406316.6_5	chr2	51188382	51188471	AC007682.3	+	miRNA	chr2	50145642	51259699	NRXN1	-	protein_coding	89	opposite	635_ID	chr2	51188383	51188471	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
10742	ENST00000606802.1_1	ENST00000377022.8_4	chr1	10699297	10714390	AL139423.1	+	lncRNA	chr1	10696660	10856703	CASZ1	-	protein_coding	15093	opposite	5049_ID	chr1	10699298	10714390	15093	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	21
10825	ENST00000607525.1	ENST00000465829.6_4	chr7	102120526	102120612	AC093668.3	+	miRNA	chr7	102120422	102158224	RASA4B	-	protein_coding	86	opposite	3234_ID	chr7	102120527	102120612	86	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	21	21
10869	ENST00000607950.1_1	ENST00000409245.5_3	chr2	47183753	47184027	AC093732.2	-	lncRNA	chr2	47143295	47301187	TTC7A	+	protein_coding	274	opposite	3242_ID	chr2	47183754	47184027	274	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	21
10895	ENST00000608142.1_1	ENST00000646855.1_1	chr2	87777013	87777553	AC133644.1	-	lncRNA	chr2	87755006	88066878	AC133644.2	+	lncRNA	540	opposite	4117_ID	chr2	87777014	87777553	540	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
10922	ENST00000608436.1_1	ENST00000462833.6_3	chr3	123002439	123002830	AC112503.1	+	lncRNA	chr3	123001142	123167937	ADCY5	-	protein_coding	391	opposite	3826_ID	chr3	123002440	123002830	391	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	21	21
10976	ENST00000609172.1_1	ENST00000496514.6_2	chr4	654997	655734	AC107464.2	-	lncRNA	chr4	619361	664571	PDE6B	+	protein_coding	737	opposite	3695_ID	chr4	654998	655734	737	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	21
11092	ENST00000610278.1_1	ENST00000479606.5_2	chr22	21335649	21336044	AC002470.1	-	lncRNA	chr22	21333750	21352410	AC002470.2	+	lncRNA	395	opposite	56_ID	chr22	21335650	21336044	395	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
11207	ENST00000613210.1_1	ENST00000359128.10_4	chr16	3592738	3595513	AC004494.1	+	lncRNA	chr16	3589032	3627404	NLRC3	-	protein_coding	3047	opposite	135_ID	chr16	3592739	3595513	2775	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	21
11512	ENST00000620344.1_1	ENST00000678096.1_1	chr17	79664054	79664744	AC139530.3	-	lncRNA	chr17	79650961	79670168	HGS	+	nonsense_mediated_decay	690	opposite	4208_ID	chr17	79664055	79664744	690	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	21
11773	ENST00000629240.1_1	ENST00000354212.9_5	chr7	78769144	78806526	AC006355.2	+	lncRNA	chr7	77646371	79082983	MAGI2	-	protein_coding	37382	opposite	456_ID	chr7	78769145	78806526	37382	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
11801	ENST00000631085.2_4	ENST00000354655.8_1	chr10	114168657	114185347	AL157786.1	-	lncRNA	chr10	114133775	114188134	ACSL5	+	protein_coding	29777	opposite	5067_ID	chr10	114168658	114185347	16690	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	21
12024	ENST00000647689.1_3	ENST00000354870.5_1	chr8	22045881	22050091	AC105206.3	-	lncRNA	chr8	22022652	22069837	BMP1	+	protein_coding	4210	opposite	3602_ID	chr8	22045882	22050091	4210	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	21
12100	ENST00000648775.1_3	ENST00000354212.9_5	chr7	78021942	78078316	AC006043.1	-	lncRNA	chr7	77646371	79082983	MAGI2	-	protein_coding	56374	same	404_ID	chr7	78021943	78078316	56374	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	21
12140	ENST00000649515.1_1	ENST00000406316.6_5	chr2	50551780	50572736	AC068725.1	+	lncRNA	chr2	50145642	51259699	NRXN1	-	protein_coding	20956	opposite	2438_ID	chr2	50551781	50572736	20956	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	21
12156	ENST00000649975.1_3	ENST00000294484.7_3	chr1	11560859	11562073	AL590989.1	-	lncRNA	chr1	11539211	11597608	DISP3	+	protein_coding	1214	opposite	5785_ID	chr1	11560860	11562073	1214	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	21
12167	ENST00000650181.1_1	ENST00000318217.10_4	chr17	30822791	30827928	AC079336.5	+	lncRNA	chr17	30819539	31204142	MYO1D	-	protein_coding	5375	opposite	2652_ID	chr17	30822792	30827928	5137	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	21
12173	ENST00000650324.1_3	ENST00000646102.1_3	chr13	111800542	111805518	AL353704.1	-	lncRNA	chr13	111767799	111958074	ARHGEF7	+	protein_coding	4976	opposite	5257_ID	chr13	111800543	111805518	4976	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
12225	ENST00000651336.1_3	ENST00000466387.5_3	chr2	79497030	79520004	AC011754.2	-	lncRNA	chr2	79412356	80875904	CTNNA2	+	protein_coding	22974	opposite	1292_ID	chr2	79497031	79520004	22974	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
12265	ENST00000652285.1_3	ENST00000335681.10_2	chr2	101587228	101593517	NPAS2-AS1	-	lncRNA	chr2	101436600	101613291	NPAS2	+	protein_coding	7000	opposite	9285_ID	chr2	101587229	101593517	6289	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	21
12308	ENST00000653062.1_1	ENST00000358450.8_4	chr2	178518146	178568213	PDE11A-AS1	+	lncRNA	chr2	178492796	178973066	PDE11A	-	protein_coding	69871	opposite	9521_ID	chr2	178518147	178568213	50067	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	21
12346	ENST00000654246.1_3	ENST00000354212.9_5	chr7	78965095	78986910	AC074024.1	-	lncRNA	chr7	77646371	79082983	MAGI2	-	protein_coding	21815	same	2564_ID	chr7	78965096	78986910	21815	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
12415	ENST00000655857.1_1	ENST00000262960.13_3	chr19	4692032	4694352	AC005594.1	+	lncRNA	chr19	4675237	4723875	DPP9	-	protein_coding	2320	opposite	320_ID	chr19	4692033	4694352	2320	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	21
12472	ENST00000656982.1_3	ENST00000322350.10_3	chr5	38399915	38403546	EGFLAM-AS2	-	lncRNA	chr5	38258660	38465582	EGFLAM	+	protein_coding	3658	opposite	6875_ID	chr5	38399916	38403546	3631	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	21
12480	ENST00000657099.1_3	ENST00000673182.1_3	chr6	154799115	154800727	AL357075.2	+	lncRNA	chr6	154480962	154831248	AL357075.4	-	protein_coding	1612	opposite	5413_ID	chr6	154799116	154800727	1612	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
12760	ENST00000662767.1_1	ENST00000616793.5_6	chr5	147105113	147108027	AC011370.1	+	lncRNA	chr5	146965000	147162291	JAKMIP2	-	protein_coding	2914	opposite	1198_ID	chr5	147105114	147108027	2914	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
12807	ENST00000663725.1_1	ENST00000403045.6_3	chr2	70856788	70875893	AC005234.2	+	lncRNA	chr2	70834749	70995330	ADD2	-	nonsense_mediated_decay	19105	opposite	260_ID	chr2	70856789	70875893	19105	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	17	21
13061	ENST00000669128.1_1	ENST00000383836.8_7	chr3	9142486	9145762	AC037193.1	+	lncRNA	chr3	9022274	9291330	SRGAP3	-	protein_coding	3276	opposite	2276_ID	chr3	9142487	9145762	3276	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	21
13155	ENST00000671345.1_1	ENST00000406316.6_5	chr2	51238914	51244088	AC007682.1	+	lncRNA	chr2	50145642	51259699	NRXN1	-	protein_coding	5174	opposite	633_ID	chr2	51238915	51244088	5174	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	21
18971	ENST00000384546.1	ENST00000643789.1_4	chr9	99018497	99018601	RNU6-1160P	-	snRNA	chr9	98997633	99114340	AL160269.1	-	nonsense_mediated_decay	104	same	10868_ID	chr9	99018498	99018601	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	21
25821	ENST00000401223.1	ENST00000273582.9_5	chr3	197401366	197401447	MIR922	-	miRNA	chr3	197398263	197476570	RUBCN	-	protein_coding	81	same	9105_ID	chr3	197401367	197401447	81	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	21	21
50661	ENST00000459187.1	ENST00000339995.11_7	chr11	10823013	10823155	SNORD97	-	snoRNA	chr11	10818600	10830473	EIF4G2	-	protein_coding	142	same	12468_ID	chr11	10823014	10823155	142	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	21
78471	ENST00000560477.1_3	ENST00000268138.12_3	chr15	90122995	90125528	AC013391.1	-	lncRNA	chr15	90118699	90171254	TICRR	+	protein_coding	2533	opposite	1436_ID	chr15	90122996	90125528	2533	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
90821	ENST00000580775.1	ENST00000461287.1_3	chr6	31668805	31668868	MIR4646	-	miRNA	chr6	31654738	31681849	AL662899.1	-	nonsense_mediated_decay	63	same	8632_ID	chr6	31668806	31668868	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	21
107321	ENST00000606593.1_1	ENST00000649678.1_3	chr8	38265565	38266260	AC087623.3	-	lncRNA	chr8	38257732	38325225	FGFR1	-	nonsense_mediated_decay	695	same	2839_ID	chr8	38265566	38266260	695	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	21
3390	ENST00000414261.1_3	ENST00000248929.14_2	chr22	40768667	40784294	SGSM3-AS1	-	lncRNA	chr22	40766597	40806293	SGSM3	+	protein_coding	15627	opposite	12053_ID	chr22	40768668	40784294	15627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	21
115671	ENST00000621471.1_1	ENST00000359440.6_6	chr15	81627917	81628460	AC103858.2	+	lncRNA	chr15	81623428	81666554	TMC3	-	protein_coding	543	opposite	3484_ID	chr15	81627918	81628460	543	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	21
175	ENST00000265271.7_2	ENST00000506502.2_1	chr5	145583167	145668786	RBM27	+	protein_coding	chr5	145583112	145718814	AC091959.1	+	protein_coding	85619	same	9714_ID	chr5	145583168	145668786	85619	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	20
220	ENST00000278422.9_2	ENST00000673810.1_1	chr11	57480064	57508445	TMX2	+	protein_coding	chr11	57480055	57585903	AP001931.2	+	nonsense_mediated_decay	28381	same	12748_ID	chr11	57480065	57508445	28381	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	20
225	ENST00000279249.3_2	ENST00000649896.1_1	chr11	65082336	65089888	CDC42EP2	+	protein_coding	chr11	65029398	65094014	AP000944.5	+	nonsense_mediated_decay	7552	same	6598_ID	chr11	65082337	65089888	7552	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	18	20
403	ENST00000312019.2_3	ENST00000566228.6_2	chr16	12180602	12184159	AC007601.1	-	lncRNA	chr16	12070590	12668144	SNX29	+	protein_coding	3557	opposite	613_ID	chr16	12180603	12184159	3557	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	20
529	ENST00000327876.5_3	ENST00000644092.1_1	chr2	47736428	47798124	KCNK12	-	protein_coding	chr2	47630257	47890285	MSH2	+	nonsense_mediated_decay	61696	opposite	7421_ID	chr2	47736429	47798124	61696	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	16	20
670	ENST00000352271.6_1	ENST00000288642.12_5	chr2	25643985	25650512	DTNB-AS1	+	lncRNA	chr2	25600113	25896516	DTNB	-	protein_coding	6527	opposite	6858_ID	chr2	25643986	25650512	6527	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	20
775	ENST00000362183.1	ENST00000543245.6_1	chr17	7126615	7126698	MIR324	-	miRNA	chr17	7120443	7128585	ACADVL	+	protein_coding	83	opposite	8318_ID	chr17	7126616	7126698	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	20
861	ENST00000362659.1	ENST00000504592.5_3	chr4	102645032	102645137	RNU6-462P	+	snRNA	chr4	102341117	102995969	BANK1	+	protein_coding	105	same	11261_ID	chr4	102645033	102645137	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	20
919	ENST00000362976.1	ENST00000249344.7_2	chr7	129124344	129124497	RNU1-72P	+	snRNA	chr7	129074272	129128240	STRIP2	+	protein_coding	153	same	10597_ID	chr7	129124345	129124497	153	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	20
986	ENST00000363384.1	ENST00000657597.1_2	chr1	43034703	43034810	RNU6-536P	+	snRNA	chr1	42928956	43122861	CCDC30	+	protein_coding	107	same	11318_ID	chr1	43034704	43034810	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	20
1013	ENST00000363518.1	ENST00000389082.10_4	chr12	31549323	31549435	RNU6-618P	+	snRNA	chr12	31535159	31744070	DENND5B	-	protein_coding	112	opposite	11383_ID	chr12	31549324	31549435	112	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	20
1098	ENST00000363944.1	ENST00000353364.7_2	chr12	62727871	62727978	RNU6-595P	-	snRNA	chr12	62654118	62810169	USP15	+	protein_coding	107	opposite	11365_ID	chr12	62727872	62727978	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	20
1157	ENST00000364306.1	ENST00000261509.10_2	chr4	169806505	169806612	RNU6-853P	+	snRNA	chr4	169418216	169849608	PALLD	+	protein_coding	107	same	11559_ID	chr4	169806506	169806612	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	20
1430	ENST00000367685.5_3	ENST00000251507.8_1	chr1	174417101	174418683	GPR52	+	protein_coding	chr1	174128654	174927319	RABGAP1L	+	protein_coding	1582	same	7165_ID	chr1	174417102	174418683	1582	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	20
1490	ENST00000372090.6_2	ENST00000671898.1_3	chr1	45805841	45809645	TOE1	+	protein_coding	chr1	45794933	45956827	AL451136.1	-	nonsense_mediated_decay	3922	opposite	12758_ID	chr1	45805842	45809645	3804	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	20
1659	ENST00000383886.1	ENST00000261509.10_2	chr4	169607758	169607867	RNU6-1336P	-	snRNA	chr4	169418216	169849608	PALLD	+	protein_coding	109	opposite	11018_ID	chr4	169607759	169607867	109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	20
1684	ENST00000383957.1	ENST00000627582.3_2	chr1	172335679	172335786	RNU6-157P	+	snRNA	chr1	171810637	172381857	DNM3	+	protein_coding	107	same	11038_ID	chr1	172335680	172335786	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	20
1729	ENST00000384061.1	ENST00000358450.8_4	chr2	178903628	178903731	RNU6-629P	+	snRNA	chr2	178492796	178973066	PDE11A	-	protein_coding	103	opposite	11393_ID	chr2	178903629	178903731	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
1749	ENST00000384129.1	ENST00000367682.6_1	chr6	139180163	139180270	RNU6-427P	-	snRNA	chr6	139117247	139225207	ECT2L	+	protein_coding	107	opposite	11229_ID	chr6	139180164	139180270	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	20
1801	ENST00000384276.1	ENST00000221455.8_3	chr19	45550715	45550819	RNU6-611P	+	snRNA	chr19	45542302	45574214	CLASRP	+	protein_coding	104	same	11380_ID	chr19	45550716	45550819	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
2115	ENST00000385019.1	ENST00000355667.11_5	chr19	10928101	10928172	MIR199A1	-	miRNA	chr19	10828754	10942579	DNM2	+	protein_coding	71	opposite	8161_ID	chr19	10928102	10928172	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	20
2202	ENST00000385214.1	ENST00000627582.3_2	chr1	172107937	172108047	MIR214	-	miRNA	chr1	171810637	172381857	DNM3	+	protein_coding	110	opposite	8179_ID	chr1	172107938	172108047	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	20
2218	ENST00000385237.1	ENST00000355667.11_5	chr19	10829079	10829179	MIR638	+	miRNA	chr19	10828754	10942579	DNM2	+	protein_coding	100	same	9045_ID	chr19	10829080	10829179	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
2252	ENST00000385289.1	ENST00000627582.3_2	chr1	172113674	172113784	MIR199A2	-	miRNA	chr1	171810637	172381857	DNM3	+	protein_coding	110	opposite	8162_ID	chr1	172113675	172113784	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	20
2394	ENST00000391028.1	ENST00000359520.12_2	chr14	102968012	102968116	RNU6-244P	+	snRNA	chr14	102829277	102968814	TECPR2	+	protein_coding	104	same	11095_ID	chr14	102968013	102968116	104	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	20	20
2425	ENST00000391139.1	ENST00000621949.2_1	chr9	42378940	42379047	RNU6-1269P	+	snRNA	chr9	42341915	42408204	ANKRD20A3P	+	protein_coding	107	same	10964_ID	chr9	42378941	42379047	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	20
2428	ENST00000391145.1	ENST00000357244.7_5	chr9	125642491	125642602	SNORD90	-	snoRNA	chr9	125606834	125667638	RC3H2	-	protein_coding	111	same	12460_ID	chr9	125642492	125642602	111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	20
2507	ENST00000396623.8_4	ENST00000648156.1_1	chr8	67344738	67381142	ADHFE1	+	protein_coding	chr8	67344720	67430759	AC009879.3	+	nonsense_mediated_decay	36416	same	4360_ID	chr8	67344739	67381142	36404	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	20
2701	ENST00000408251.1	ENST00000335750.7_2	chr14	79084208	79084318	AC008045.1	+	miRNA	chr14	78636715	80334634	NRXN3	+	protein_coding	110	same	683_ID	chr14	79084209	79084318	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	20
2737	ENST00000408337.1	ENST00000615603.4_5	chr3	71591120	71591240	MIR1284	-	miRNA	chr3	71003865	71633140	FOXP1	-	protein_coding	120	same	8044_ID	chr3	71591121	71591240	120	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
2747	ENST00000408353.1	ENST00000392533.8_4	chr12	118604603	118604676	AC026366.1	+	miRNA	chr12	118587605	118810712	TAOK3	-	protein_coding	73	opposite	2139_ID	chr12	118604604	118604676	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	20
2814	ENST00000408519.1	ENST00000645793.1_4	chr8	72361929	72362043	AC099805.1	+	miRNA	chr8	72109745	72460296	EYA1	-	protein_coding	114	opposite	3396_ID	chr8	72361930	72362043	114	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	20
2859	ENST00000408618.1	ENST00000432587.6_1	chr1	167967897	167967964	MIR1255B2	+	miRNA	chr1	167905796	168045079	DCAF6	+	protein_coding	67	same	8007_ID	chr1	167967898	167967964	67	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	20
3047	ENST00000410323.1	ENST00000299314.12_4	chr12	102159183	102159287	RNU6-101P	-	snRNA	chr12	102139276	102224737	GNPTAB	-	protein_coding	104	same	10770_ID	chr12	102159184	102159287	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	20
3060	ENST00000410381.1	ENST00000370460.7_4	chrX	147903687	147903972	RN7SKP267	-	misc_RNA	chrX	147582136	148082193	AFF2	+	protein_coding	285	opposite	9866_ID	chrX	147903688	147903972	285	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	20
3084	ENST00000410439.1	ENST00000540630.5_1	chr10	69917835	69918165	RN7SKP202	+	misc_RNA	chr10	69865873	69971769	MYPN	+	protein_coding	330	same	9821_ID	chr10	69917836	69918165	330	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	20
3193	ENST00000411000.1	ENST00000299314.12_4	chr12	102190187	102190280	RNU6-172P	-	snRNA	chr12	102139276	102224737	GNPTAB	-	protein_coding	93	same	11049_ID	chr12	102190188	102190280	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
3301	ENST00000411969.1_3	ENST00000490103.6_4	chr22	29909877	29931379	AC005529.1	-	lncRNA	chr22	29901867	29949746	THOC5	-	protein_coding	21502	same	309_ID	chr22	29909878	29931379	21502	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	20
3362	ENST00000413494.1_3	ENST00000324198.11_2	chr22	25976207	25977349	AL022329.2	-	lncRNA	chr22	25960641	26125261	GRK3	+	protein_coding	1142	opposite	4484_ID	chr22	25976208	25977349	1142	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
3386	ENST00000414227.1_3	ENST00000394507.5_5	chr7	91829327	91836171	AC000120.1	-	lncRNA	chr7	91828282	91875414	KRIT1	-	protein_coding	6844	same	23_ID	chr7	91829328	91836171	6844	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	19	20
3416	ENST00000414890.1_1	ENST00000251507.8_1	chr1	174866094	174867133	RABGAP1L-IT1	+	lncRNA	chr1	174128654	174927319	RABGAP1L	+	protein_coding	1039	same	9695_ID	chr1	174866095	174867133	1039	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	20
3449	ENST00000415423.1_3	ENST00000372228.9_4	chr9	134391944	134397616	AL358781.2	-	lncRNA	chr9	134378175	134399186	POMT1	+	protein_coding	5672	opposite	5464_ID	chr9	134391945	134397616	5672	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	20
3456	ENST00000415589.1_3	ENST00000399503.4_2	chr5	56137842	56157991	AC008937.2	-	lncRNA	chr5	56111375	56191979	MAP3K1	+	protein_coding	20149	opposite	833_ID	chr5	56137843	56157991	20149	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	20
3512	ENST00000417354.3_4	ENST00000627582.3_2	chr1	172107536	172113980	DNM3OS	-	lncRNA	chr1	171810637	172381857	DNM3	+	protein_coding	6444	opposite	6830_ID	chr1	172107537	172113980	6444	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	20
3591	ENST00000419596.1_1	ENST00000485760.5_3	chr1	58525810	58545946	AL445193.2	+	lncRNA	chr1	57463571	59012406	DAB1	-	processed_transcript	20136	opposite	5615_ID	chr1	58525811	58545946	20136	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	20
3613	ENST00000420058.1_3	ENST00000448002.6_3	chr7	102613968	102629303	NFE4	+	lncRNA	chr7	102453676	102715286	FBXL13	-	nonsense_mediated_decay	15335	opposite	9256_ID	chr7	102613969	102629303	15335	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	20
3641	ENST00000420845.1_3	ENST00000254667.8_3	chr10	129727639	129732781	AL158166.2	-	lncRNA	chr10	129705366	129884119	PTPRE	+	protein_coding	5142	opposite	5106_ID	chr10	129727640	129732781	5142	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
3675	ENST00000421759.1_1	ENST00000409245.5_3	chr2	47294960	47298343	AC073283.1	+	lncRNA	chr2	47143295	47301187	TTC7A	+	protein_coding	3383	same	2517_ID	chr2	47294961	47298343	3383	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	20
3691	ENST00000422038.1_1	ENST00000485760.5_3	chr1	57852247	57853122	AL390243.1	+	lncRNA	chr1	57463571	59012406	DAB1	-	processed_transcript	875	opposite	5553_ID	chr1	57852248	57853122	875	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	20
3699	ENST00000422201.1_3	ENST00000409245.5_3	chr2	47262417	47267663	AC093732.1	-	lncRNA	chr2	47143295	47301187	TTC7A	+	protein_coding	5246	opposite	3241_ID	chr2	47262418	47267663	5246	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	20
3798	ENST00000424776.5_2	ENST00000317135.13_5	chrX	114423972	114427431	RBMXL3	+	protein_coding	chrX	114345178	114468659	LRCH2	-	protein_coding	3459	opposite	9721_ID	chrX	114423973	114427431	3459	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
3982	ENST00000430586.1_1	ENST00000335681.10_2	chr2	101439122	101463682	AC092168.2	+	lncRNA	chr2	101436600	101613291	NPAS2	+	protein_coding	24560	same	3066_ID	chr2	101439123	101463682	24560	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
4068	ENST00000433110.1_1	ENST00000254667.8_3	chr10	129732961	129734431	AL158166.1	+	lncRNA	chr10	129705366	129884119	PTPRE	+	protein_coding	1470	same	5105_ID	chr10	129732962	129734431	1470	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
4153	ENST00000435346.1_1	ENST00000370460.7_4	chrX	147628398	147628918	AFF2-IT1	+	lncRNA	chrX	147582136	148082193	AFF2	+	protein_coding	520	same	4409_ID	chrX	147628399	147628918	520	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
4157	ENST00000435478.1_1	ENST00000296474.8_5	chr3	49936734	49941190	AC105935.2	+	lncRNA	chr3	49924434	49941306	MST1R	-	protein_coding	4456	opposite	3624_ID	chr3	49936735	49941190	4456	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	20
4324	ENST00000440094.2_3	ENST00000377636.8_5	chr13	75949646	75951430	AL139230.1	-	lncRNA	chr13	75857638	76056305	TBC1D4	-	protein_coding	1784	same	5017_ID	chr13	75949647	75951430	1784	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
4362	ENST00000441146.1_1	ENST00000427190.6_4	chrX	30689751	30690283	GK-IT1	+	lncRNA	chrX	30671539	30749579	GK	+	protein_coding	532	same	7128_ID	chrX	30689752	30690283	532	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	20
4418	ENST00000442605.1_3	ENST00000398341.7_1	chr21	43980483	43982044	AP001625.2	-	lncRNA	chr21	43919741	44001550	SLC37A1	+	protein_coding	1561	opposite	6155_ID	chr21	43980484	43982044	1561	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	20
4451	ENST00000443919.1_1	ENST00000370397.8_4	chr10	101949792	101950504	AL138921.2	+	lncRNA	chr10	101948056	101989353	CHUK	-	protein_coding	712	opposite	4984_ID	chr10	101949793	101950504	712	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	20
4569	ENST00000447277.1_1	ENST00000284776.11_4	chr4	186587038	186596571	AC108472.1	+	lncRNA	chr4	186506597	186877522	SORBS2	-	protein_coding	9533	opposite	3741_ID	chr4	186587039	186596571	9533	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	20
4571	ENST00000447336.1_1	ENST00000448002.6_3	chr7	102670550	102671801	AC073127.1	+	lncRNA	chr7	102453676	102715286	FBXL13	-	nonsense_mediated_decay	17099	opposite	2505_ID	chr7	102670551	102671801	1251	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	20
4676	ENST00000450520.1	ENST00000621949.2_1	chr9	42363047	42367092	RP11-216M21.7	-	antisense	chr9	42341915	42408204	ANKRD20A3P	+	protein_coding	4045	opposite	11882_ID	chr9	42363048	42367092	4045	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	21
4682	ENST00000450800.1_1	ENST00000627582.3_2	chr1	171833326	171833827	DNM3-IT1	+	lncRNA	chr1	171810637	172381857	DNM3	+	protein_coding	501	same	6829_ID	chr1	171833327	171833827	501	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
4757	ENST00000452442.5_3	ENST00000251507.8_1	chr1	174904083	174923398	RABGAP1L-AS1	-	lncRNA	chr1	174128654	174927319	RABGAP1L	+	protein_coding	19315	opposite	9694_ID	chr1	174904084	174923398	19315	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	20
4804	ENST00000453835.1_1	ENST00000413817.8_5	chr22	50753059	50754437	CR559946.1	+	lncRNA	chr22	50747458	50765441	DENND6B	-	protein_coding	1378	opposite	6707_ID	chr22	50753060	50754437	1378	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	20
4913	ENST00000456728.1_1	ENST00000284776.11_4	chr4	186839293	186840614	AC096659.1	+	lncRNA	chr4	186506597	186877522	SORBS2	-	protein_coding	1321	opposite	3285_ID	chr4	186839294	186840614	1321	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
4924	ENST00000457053.1_3	ENST00000358450.8_4	chr2	178817837	178876716	AC011998.2	-	lncRNA	chr2	178492796	178973066	PDE11A	-	protein_coding	58879	same	1318_ID	chr2	178817838	178876716	58879	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	20
4926	ENST00000457081.1_3	ENST00000355286.12_4	chr6	133773994	133777743	AL024497.2	-	lncRNA	chr6	133562494	133853266	EYA4	+	protein_coding	3749	opposite	4501_ID	chr6	133773995	133777743	3749	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	20
4947	ENST00000457412.6_3	ENST00000485760.5_3	chr1	58328126	58346577	DAB1-AS1	+	lncRNA	chr1	57463571	59012406	DAB1	-	processed_transcript	20374	opposite	6764_ID	chr1	58328127	58346577	18451	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	20
5038	ENST00000459042.1	ENST00000485760.5_3	chr1	58222755	58222848	AL137855.1	+	miRNA	chr1	57463571	59012406	DAB1	-	processed_transcript	93	opposite	4961_ID	chr1	58222756	58222848	93	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	20
5065	ENST00000459199.1	ENST00000335750.7_2	chr14	78864220	78864302	AC007056.1	-	miRNA	chr14	78636715	80334634	NRXN3	+	protein_coding	82	opposite	502_ID	chr14	78864221	78864302	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	20
5082	ENST00000459286.1	ENST00000448002.6_3	chr7	102497896	102498202	RN7SKP198	+	misc_RNA	chr7	102453676	102715286	FBXL13	-	nonsense_mediated_decay	306	opposite	9817_ID	chr7	102497897	102498202	306	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	20
5102	ENST00000459408.1	ENST00000369002.9_4	chr6	108251291	108251386	RNU6-437P	+	snRNA	chr6	108188959	108279412	SEC63	-	protein_coding	95	opposite	11240_ID	chr6	108251292	108251386	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
5258	ENST00000467795.2	ENST00000538366.5_3	chr1	169927084	169927387	RN7SL269P	-	misc_RNA	chr1	169890471	170043879	KIFAP3	-	protein_coding	303	same	10067_ID	chr1	169927085	169927387	303	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	20
5282	ENST00000469545.2	ENST00000263736.5_4	chr2	45796339	45796631	RN7SL414P	-	misc_RNA	chr2	45615818	45838406	SRBD1	-	protein_coding	292	same	10167_ID	chr2	45796340	45796631	292	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	20
5292	ENST00000469988.2	ENST00000578646.5_1	chr18	19373843	19374118	RN7SL233P	+	misc_RNA	chr18	19284917	19444935	MIB1	+	processed_transcript	275	same	10039_ID	chr18	19373844	19374118	275	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	20
5297	ENST00000470427.1_1	ENST00000311128.10_4	chr3	57614536	57640645	DENND6A-AS1	+	lncRNA	chr3	57611180	57678804	DENND6A	-	protein_coding	26109	opposite	6788_ID	chr3	57614537	57640645	26109	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	20
5508	ENST00000484682.2_3	ENST00000646701.1_1	chr22	32321504	32341332	C22orf24	-	lncRNA	chr22	32150884	32352230	Z82190.2	+	protein_coding	20000	opposite	6505_ID	chr22	32321505	32341332	19828	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	20
5709	ENST00000498714.1_3	ENST00000615603.4_5	chr3	71619405	71623608	FOXP1-IT1	-	lncRNA	chr3	71003865	71633140	FOXP1	-	protein_coding	4203	same	7069_ID	chr3	71619406	71623608	4203	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
5796	ENST00000503844.1_1	ENST00000442267.3_4	chr4	141633321	141637235	AC096733.1	+	lncRNA	chr4	141541935	141677539	TBC1D9	-	protein_coding	3914	opposite	3293_ID	chr4	141633322	141637235	3914	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
5802	ENST00000503998.1_3	ENST00000265162.10_2	chr4	111433643	111440661	AC098798.1	-	lncRNA	chr4	111397310	111486441	ENPEP	+	protein_coding	7018	opposite	3341_ID	chr4	111433644	111440661	7018	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	20
5932	ENST00000507842.1_3	ENST00000261509.10_2	chr4	169569046	169569738	PALLD-AS1	-	lncRNA	chr4	169418216	169849608	PALLD	+	protein_coding	692	opposite	9496_ID	chr4	169569047	169569738	692	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
5941	ENST00000508020.2_1	ENST00000515030.5_3	chr4	185734772	185742454	AC084871.1	+	lncRNA	chr4	185676753	185747972	ACSL1	-	protein_coding	7682	opposite	2772_ID	chr4	185734773	185742454	7682	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
5964	ENST00000508985.1_3	ENST00000261509.10_2	chr4	169750069	169754088	AC080188.1	-	lncRNA	chr4	169418216	169849608	PALLD	+	protein_coding	4019	opposite	2707_ID	chr4	169750070	169754088	4019	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	20
5989	ENST00000509820.1_1	ENST00000264990.11_4	chr3	132320231	132337811	ACKR4	+	nonsense_mediated_decay	chr3	132276984	132378653	ACAD11	-	protein_coding	21698	opposite	4324_ID	chr3	132320232	132337811	17580	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	20
6097	ENST00000512856.1_1	ENST00000296754.7_6	chr5	96120480	96121703	AC008906.1	+	lncRNA	chr5	96096513	96143803	ERAP1	-	protein_coding	1223	opposite	829_ID	chr5	96120481	96121703	1223	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	20
6207	ENST00000515912.1	ENST00000389757.7_2	chr2	159390711	159390796	snoZ5	+	snoRNA	chr2	159313610	159539391	PKP4	+	protein_coding	85	same	12478_ID	chr2	159390712	159390796	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
6522	ENST00000516834.1	ENST00000448002.6_3	chr7	102475051	102475155	RNU6-1136P	+	snRNA	chr7	102453676	102715286	FBXL13	-	nonsense_mediated_decay	104	opposite	10848_ID	chr7	102475052	102475155	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	20
6593	ENST00000517031.1	ENST00000271636.12_3	chr1	151500306	151500414	SNORA44	-	snoRNA	chr1	151483862	151511168	CGN	+	protein_coding	108	opposite	12174_ID	chr1	151500307	151500414	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	20
6831	ENST00000520980.2_3	ENST00000296701.10_2	chr5	147809721	147810370	AC114939.1	-	lncRNA	chr5	147763497	147822390	FBXO38	+	protein_coding	649	opposite	3879_ID	chr5	147809722	147810370	649	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	20
7216	ENST00000534647.2_2	ENST00000673810.1_1	chr11	57509250	57572243	AP001931.1	+	retained_intron	chr11	57480055	57585903	AP001931.2	+	nonsense_mediated_decay	62993	same	6170_ID	chr11	57509251	57572243	62993	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	20
7551	ENST00000552704.1_1	ENST00000399518.3_3	chr15	42298329	42302315	AC039056.1	+	lncRNA	chr15	42273779	42343388	PLA2G4E	-	protein_coding	3986	opposite	2287_ID	chr15	42298330	42302315	3986	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	20
7571	ENST00000553348.1_3	ENST00000335750.7_2	chr14	79538474	79541105	AC026888.1	-	lncRNA	chr14	78636715	80334634	NRXN3	+	protein_coding	2636	opposite	2177_ID	chr14	79538475	79541105	2631	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	20
7579	ENST00000553628.1_3	ENST00000335750.7_2	chr14	79210740	79220221	AC009396.1	-	lncRNA	chr14	78636715	80334634	NRXN3	+	protein_coding	9481	opposite	952_ID	chr14	79210741	79220221	9481	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	20
7587	ENST00000553812.1_3	ENST00000335750.7_2	chr14	80077760	80099654	AC008056.2	-	lncRNA	chr14	78636715	80334634	NRXN3	+	protein_coding	21894	opposite	685_ID	chr14	80077761	80099654	21894	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	20
7604	ENST00000554219.1_3	ENST00000335750.7_2	chr14	78745914	78749719	AF099810.1	-	lncRNA	chr14	78636715	80334634	NRXN3	+	protein_coding	3805	opposite	4378_ID	chr14	78745915	78749719	3805	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	20
7622	ENST00000554759.1_3	ENST00000335750.7_2	chr14	79713010	79715366	AC022469.2	-	lncRNA	chr14	78636715	80334634	NRXN3	+	protein_coding	2356	opposite	1872_ID	chr14	79713011	79715366	2356	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	20
7633	ENST00000555291.1_1	ENST00000335750.7_2	chr14	79666324	79667975	AC022469.1	+	lncRNA	chr14	78636715	80334634	NRXN3	+	protein_coding	1651	same	1871_ID	chr14	79666325	79667975	1651	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	20
7658	ENST00000555954.1_3	ENST00000335750.7_2	chr14	79161663	79164465	AC009396.2	-	lncRNA	chr14	78636715	80334634	NRXN3	+	protein_coding	2802	opposite	953_ID	chr14	79161664	79164465	2802	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	20
7684	ENST00000556713.1_1	ENST00000356146.5_3	chr14	50863730	50865063	AL359397.1	+	lncRNA	chr14	50802710	50883179	CDKL1	-	processed_transcript	1333	opposite	5484_ID	chr14	50863731	50865063	1333	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	20
7694	ENST00000557007.1_1	ENST00000328459.11_4	chr14	91108983	91115238	AL096869.2	+	lncRNA	chr14	90990907	91282774	TTC7B	-	protein_coding	6257	opposite	4692_ID	chr14	91108984	91115238	6255	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	20
7704	ENST00000557343.1_1	ENST00000532462.5_3	chr14	51378943	51380076	AL358334.3	+	lncRNA	chr14	51324608	51411174	PYGL	-	protein_coding	1133	opposite	5451_ID	chr14	51378944	51380076	1133	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	20
7866	ENST00000561155.1_1	ENST00000389286.9_4	chr15	55972582	55973661	AC012378.1	+	lncRNA	chr15	55903741	56035350	PRTG	-	protein_coding	1079	opposite	1371_ID	chr15	55972583	55973661	1079	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	20
7969	ENST00000563116.1_3	ENST00000566228.6_2	chr16	12650209	12651551	AC010333.1	-	lncRNA	chr16	12070590	12668144	SNX29	+	protein_coding	1342	opposite	1066_ID	chr16	12650210	12651551	1342	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	20
8039	ENST00000564577.1_1	ENST00000566228.6_2	chr16	12466668	12467756	AC007598.1	+	lncRNA	chr16	12070590	12668144	SNX29	+	protein_coding	1088	same	610_ID	chr16	12466669	12467756	1088	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	20
8073	ENST00000565359.1_1	ENST00000566228.6_2	chr16	12639338	12640541	AC131391.1	+	lncRNA	chr16	12070590	12668144	SNX29	+	protein_coding	1203	same	4089_ID	chr16	12639339	12640541	1203	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	20
8153	ENST00000566957.1_3	ENST00000566228.6_2	chr16	12187483	12189164	AC007601.2	-	lncRNA	chr16	12070590	12668144	SNX29	+	protein_coding	1681	opposite	614_ID	chr16	12187484	12189164	1681	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	20
8272	ENST00000569490.1_3	ENST00000566228.6_2	chr16	12460838	12466439	AC007598.2	-	lncRNA	chr16	12070590	12668144	SNX29	+	protein_coding	5601	opposite	611_ID	chr16	12460839	12466439	5601	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	20
8505	ENST00000577558.1	ENST00000184956.11_4	chr17	58120165	58120243	AC005702.2	-	miRNA	chr17	58118368	58156282	HEATR6	-	protein_coding	78	same	335_ID	chr17	58120166	58120243	78	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	20	20
8561	ENST00000577791.1	ENST00000637521.2_4	chr9	130452965	130453074	MIR3911	-	miRNA	chr9	130341648	130453165	STXBP1	+	protein_coding	109	opposite	8417_ID	chr9	130452966	130453074	109	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	20	20
8609	ENST00000578076.1	ENST00000355667.11_5	chr19	10890929	10891011	MIR4748	+	miRNA	chr19	10828754	10942579	DNM2	+	protein_coding	82	same	8735_ID	chr19	10890930	10891011	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	20
8612	ENST00000578110.1	ENST00000398339.5_3	chr18	53146451	53146529	MIR4529	+	miRNA	chr18	52895166	53303258	TCF4	-	protein_coding	78	opposite	8611_ID	chr18	53146452	53146529	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	20
8711	ENST00000578714.1	ENST00000264649.10_2	chr17	40646790	40646848	MIR548AT	+	miRNA	chr17	40610897	40674600	ATP6V0A1	+	protein_coding	58	same	8885_ID	chr17	40646791	40646848	58	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	20
8785	ENST00000579148.1	ENST00000398148.7_6	chr19	6416420	6416522	MIR3940	-	miRNA	chr19	6413358	6424805	KHSRP	-	protein_coding	102	same	8437_ID	chr19	6416421	6416522	102	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	20
8810	ENST00000579338.1	ENST00000425654.7_4	chrX	21581189	21581281	AL928874.1	+	miRNA	chrX	21392535	21672813	CNKSR2	+	protein_coding	92	same	5920_ID	chrX	21581190	21581281	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	20
8957	ENST00000580172.1	ENST00000264866.9_2	chr4	26639011	26639112	AC093807.1	-	miRNA	chr4	26585705	26757845	TBC1D19	+	protein_coding	101	opposite	3247_ID	chr4	26639012	26639112	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	20
9001	ENST00000580405.1	ENST00000379672.10_4	chr17	12820584	12820659	MIR1269B	-	miRNA	chr17	12692814	12894960	ARHGAP44	+	protein_coding	75	opposite	8025_ID	chr17	12820585	12820659	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	20
9002	ENST00000580425.1	ENST00000261716.8_2	chr17	27717679	27717748	MIR4523	+	miRNA	chr17	27717380	27878921	TAOK1	+	protein_coding	69	same	8605_ID	chr17	27717680	27717748	69	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	20
9055	ENST00000580664.1	ENST00000412402.5_1	chr7	114269909	114270011	AC020606.1	+	miRNA	chr7	113726381	114330960	FOXP2	+	nonsense_mediated_decay	102	same	1710_ID	chr7	114269910	114270011	102	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	20
9067	ENST00000580728.1	ENST00000649865.1_2	chr15	99327654	99327731	MIR4714	+	miRNA	chr15	99191767	99507759	IGF1R	+	protein_coding	77	same	8702_ID	chr15	99327655	99327731	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
9134	ENST00000581072.6_4	ENST00000578646.5_1	chr18	19405447	19411500	MIR133A1HG	-	lncRNA	chr18	19284917	19444935	MIB1	+	processed_transcript	6053	opposite	8082_ID	chr18	19405448	19411500	6053	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	20
9237	ENST00000581765.1	ENST00000417647.7_2	chr5	140027428	140027511	MIR3655	+	miRNA	chr5	140027413	140042065	IK	+	protein_coding	83	same	8364_ID	chr5	140027429	140027511	83	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	20
9307	ENST00000582102.1	ENST00000578646.5_1	chr18	19356838	19356938	AC091038.1	+	miRNA	chr18	19284917	19444935	MIB1	+	processed_transcript	100	same	2967_ID	chr18	19356839	19356938	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	20
9320	ENST00000582185.1	ENST00000674963.1_1	chr16	70309971	70310251	RN7SL279P	+	misc_RNA	chr16	70285885	70323483	AARS1	-	protein_coding	280	opposite	10075_ID	chr16	70309972	70310251	280	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	20
9341	ENST00000582258.1	ENST00000323929.8_5	chr11	94149875	94149927	AP000765.1	+	miRNA	chr11	94148735	94227010	MRE11	-	protein_coding	52	opposite	6025_ID	chr11	94149876	94149927	52	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	20	20
9347	ENST00000582298.1	ENST00000184956.11_4	chr17	58120054	58120133	AC005702.3	-	miRNA	chr17	58118368	58156282	HEATR6	-	protein_coding	79	same	336_ID	chr17	58120055	58120133	79	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	20	20
9447	ENST00000582839.1	ENST00000223357.8_2	chr7	44150447	44150511	MIR4649	+	miRNA	chr7	44143943	44154159	AEBP1	+	protein_coding	64	same	8635_ID	chr7	44150448	44150511	64	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	20
9470	ENST00000582977.1	ENST00000533871.8_6	chr11	133768398	133768476	MIR4697	-	miRNA	chr11	133766332	133826863	IGSF9B	-	protein_coding	78	same	8684_ID	chr11	133768399	133768476	78	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	20	20
9489	ENST00000583094.1	ENST00000550422.5_4	chr12	49165757	49165820	MIR4701	-	miRNA	chr12	49159980	49182820	ADCY6	-	protein_coding	63	same	8689_ID	chr12	49165758	49165820	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	20
9499	ENST00000583144.1	ENST00000184956.11_4	chr17	58119906	58119988	AC005702.4	-	miRNA	chr17	58118368	58156282	HEATR6	-	protein_coding	82	same	337_ID	chr17	58119907	58119988	82	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	20	20
9531	ENST00000583299.1	ENST00000379672.10_4	chr17	12875868	12876142	RN7SL550P	-	misc_RNA	chr17	12692814	12894960	ARHGAP44	+	protein_coding	274	opposite	10265_ID	chr17	12875869	12876142	274	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	20
9586	ENST00000583643.1_1	ENST00000644974.1_1	chr17	25792137	25792567	AC069366.2	+	lncRNA	chr17	25783495	25953461	KSR1	+	protein_coding	430	same	2487_ID	chr17	25792138	25792567	430	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
9604	ENST00000583724.1	ENST00000674963.1_1	chr16	70298071	70298383	RN7SL407P	-	misc_RNA	chr16	70285885	70323483	AARS1	-	protein_coding	312	same	10162_ID	chr16	70298072	70298383	312	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	20
9626	ENST00000583864.2_4	ENST00000670016.1_2	chr9	98783052	98790242	LINC00092	-	lncRNA	chr9	98637972	98883436	ERCC6L2	+	nonsense_mediated_decay	8270	opposite	7529_ID	chr9	98783053	98790242	7190	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	20
9645	ENST00000583979.1	ENST00000184956.11_4	chr17	58120385	58120466	MIR4737	-	miRNA	chr17	58118368	58156282	HEATR6	-	protein_coding	81	same	8724_ID	chr17	58120386	58120466	81	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	20	20
9651	ENST00000584016.1	ENST00000638157.1_2	chr11	123252147	123252220	MIR4493	-	miRNA	chr11	123229135	123498475	GRAMD1B	+	protein_coding	73	opposite	8576_ID	chr11	123252148	123252220	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
9672	ENST00000584109.1_1	ENST00000400555.7_4	chr18	9587383	9590180	AP001381.1	+	lncRNA	chr18	9546788	9614567	PPP4R1	-	protein_coding	2797	opposite	6127_ID	chr18	9587384	9590180	2797	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	20
9733	ENST00000584431.1_1	ENST00000677752.1_1	chr18	2948338	2960754	AP000919.1	+	lncRNA	chr18	2916996	3013142	LPIN2	-	protein_coding	12519	opposite	6053_ID	chr18	2948339	2960754	12416	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	20
9736	ENST00000584467.1	ENST00000334344.11_2	chr12	46267811	46268111	RN7SL246P	+	misc_RNA	chr12	46123488	46301820	ARID2	+	protein_coding	300	same	10053_ID	chr12	46267812	46268111	300	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	20
9741	ENST00000584484.1	ENST00000374751.7_5	chr10	35368525	35368608	MIR3611	-	miRNA	chr10	35297478	35379570	CUL2	-	protein_coding	83	same	8344_ID	chr10	35368526	35368608	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
9892	ENST00000585310.1	ENST00000251507.8_1	chr1	174317402	174317493	AL022400.1	+	miRNA	chr1	174128654	174927319	RABGAP1L	+	protein_coding	91	same	4488_ID	chr1	174317403	174317493	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	20
9910	ENST00000585759.1_3	ENST00000586448.5_1	chr18	43004074	43063183	SLC14A2-AS1	-	lncRNA	chr18	42792959	43262940	SLC14A2	+	protein_coding	59455	opposite	12072_ID	chr18	43004075	43063183	59109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
9917	ENST00000585897.1_1	ENST00000586448.5_1	chr18	43063309	43109820	AC021517.1	+	lncRNA	chr18	42792959	43262940	SLC14A2	+	protein_coding	46513	same	1791_ID	chr18	43063310	43109820	46511	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
9921	ENST00000585999.1_3	ENST00000252699.7_3	chr19	39174512	39184246	AC008649.2	-	lncRNA	chr19	39138288	39222229	ACTN4	+	protein_coding	9734	opposite	762_ID	chr19	39174513	39184246	9734	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
9939	ENST00000586467.1_1	ENST00000398339.5_3	chr18	53159405	53163623	TCF4-AS2	+	lncRNA	chr18	52895166	53303258	TCF4	-	protein_coding	4218	opposite	12644_ID	chr18	53159406	53163623	4218	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	20
9969	ENST00000587369.1_1	ENST00000586448.5_1	chr18	43087166	43130148	AC091151.2	+	lncRNA	chr18	42792959	43262940	SLC14A2	+	protein_coding	42982	same	2982_ID	chr18	43087167	43130148	42982	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
10063	ENST00000590535.2_1	ENST00000586448.5_1	chr18	43226117	43227902	AC023421.1	+	lncRNA	chr18	42792959	43262940	SLC14A2	+	protein_coding	1785	same	1948_ID	chr18	43226118	43227902	1785	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	20
10081	ENST00000591237.1_1	ENST00000264649.10_2	chr17	40661801	40663537	AC067852.3	+	lncRNA	chr17	40610897	40674600	ATP6V0A1	+	protein_coding	1736	same	2378_ID	chr17	40661802	40663537	1736	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	20
10253	ENST00000596946.1_3	ENST00000668164.1_1	chr19	7455407	7459925	AC119396.2	-	lncRNA	chr19	7447719	7535127	AC008878.3	+	protein_coding	4518	opposite	3950_ID	chr19	7455408	7459925	4518	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
10316	ENST00000598541.1_3	ENST00000301178.9_2	chr19	41727330	41727956	AC011510.1	-	lncRNA	chr19	41725127	41767671	AXL	+	protein_coding	626	opposite	1260_ID	chr19	41727331	41727956	626	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	20
10428	ENST00000602255.1_1	ENST00000601953.5_3	chr19	39228923	39230503	AC022144.1	+	lncRNA	chr19	39221070	39260544	CAPN12	-	protein_coding	1580	opposite	1827_ID	chr19	39228924	39230503	1580	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	20
10440	ENST00000602328.1_1	ENST00000395386.7_4	chr8	133838423	133839148	AF230666.2	+	lncRNA	chr8	133787633	133861052	PHF20L1	+	protein_coding	725	same	4404_ID	chr8	133838424	133839148	725	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	20
10607	ENST00000604792.1_1	ENST00000346085.10_6	chr6	157101460	157101589	AL355297.1	-	lncRNA	chr6	157097153	157531913	ARID1B	+	protein_coding	129	opposite	5323_ID	chr6	157101461	157101589	129	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
10641	ENST00000605640.1_3	ENST00000599564.5_3	chr19	35505864	35516239	AC020907.4	-	lncRNA	chr19	35485687	35517375	GRAMD1A	+	protein_coding	10375	opposite	1745_ID	chr19	35505865	35516239	10375	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	20
10669	ENST00000606121.1	ENST00000346085.10_6	chr6	157100811	157100865	MIR4466	-	miRNA	chr6	157097153	157531913	ARID1B	+	protein_coding	54	opposite	8558_ID	chr6	157100812	157100865	54	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
10882	ENST00000608032.1_1	ENST00000677752.1_1	chr18	2920963	2921683	AP000919.3	+	lncRNA	chr18	2916996	3013142	LPIN2	-	protein_coding	720	opposite	6055_ID	chr18	2920964	2921683	720	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	20
10885	ENST00000608064.1_1	ENST00000404141.6_4	chr7	154742935	154743898	AC093726.1	+	lncRNA	chr7	154735399	154794834	PAXIP1	-	protein_coding	963	opposite	3239_ID	chr7	154742936	154743898	963	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	20
10972	ENST00000609134.1_1	ENST00000404141.6_4	chr7	154748138	154748817	AC093726.2	+	lncRNA	chr7	154735399	154794834	PAXIP1	-	protein_coding	679	opposite	3240_ID	chr7	154748139	154748817	679	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	20
11222	ENST00000613495.1_1	ENST00000541240.5_5	chr16	57793269	57793936	AC092118.2	+	lncRNA	chr16	57792356	57836935	KIFC3	-	protein_coding	667	opposite	3053_ID	chr16	57793270	57793936	667	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	20
11287	ENST00000614966.1_1	ENST00000559237.5_4	chr15	57022129	57022809	AC090517.2	-	lncRNA	chr15	56922378	57026284	ZNF280D	-	protein_coding	680	same	2902_ID	chr15	57022130	57022809	680	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
11302	ENST00000615559.1_1	ENST00000373325.6_1	chr20	37591114	37591636	AL023803.3	+	lncRNA	chr20	37590941	37668364	DHX35	+	protein_coding	522	same	4495_ID	chr20	37591115	37591636	522	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
11312	ENST00000615731.1_1	ENST00000334344.11_2	chr12	46182971	46183440	AC009464.1	+	lncRNA	chr12	46123488	46301820	ARID2	+	protein_coding	469	same	960_ID	chr12	46182972	46183440	469	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	20
11314	ENST00000615819.1_1	ENST00000615603.4_5	chr3	71617013	71620263	AC097634.2	+	lncRNA	chr3	71003865	71633140	FOXP1	-	protein_coding	3250	opposite	3330_ID	chr3	71617014	71620263	3250	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
11395	ENST00000617588.1_1	ENST00000360439.8_3	chr15	75745304	75746288	AC105137.2	-	lncRNA	chr15	75663273	75748124	SIN3A	-	protein_coding	984	same	3598_ID	chr15	75745305	75746288	984	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
11406	ENST00000617898.1_1	ENST00000379672.10_4	chr17	12885929	12886319	AC005277.2	-	lncRNA	chr17	12692814	12894960	ARHGAP44	+	protein_coding	390	opposite	267_ID	chr17	12885930	12886319	390	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	20
11424	ENST00000618697.1_1	ENST00000649865.1_2	chr15	99203438	99203897	AC118658.1	+	lncRNA	chr15	99191767	99507759	IGF1R	+	protein_coding	459	same	3947_ID	chr15	99203439	99203897	459	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
11477	ENST00000619681.1_1	ENST00000354870.5_1	chr8	22026850	22029221	AC105206.1	+	lncRNA	chr8	22022652	22069837	BMP1	+	protein_coding	2371	same	3601_ID	chr8	22026851	22029221	2371	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
11502	ENST00000620144.1_3	ENST00000621332.5_3	chr17	36871580	36876525	AC006449.3	-	lncRNA	chr17	36861525	36886048	MLLT6	+	protein_coding	4945	opposite	464_ID	chr17	36871581	36876525	4945	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	20
11555	ENST00000621354.1_1	ENST00000389082.10_4	chr12	31596725	31597142	AC068792.1	-	lncRNA	chr12	31535159	31744070	DENND5B	-	protein_coding	417	same	2450_ID	chr12	31596726	31597142	417	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	20
11659	ENST00000623684.1_1	ENST00000413817.8_5	chr22	50754463	50755454	CR559946.2	+	lncRNA	chr22	50747458	50765441	DENND6B	-	protein_coding	991	opposite	6708_ID	chr22	50754464	50755454	991	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	20
11682	ENST00000624141.1_2	ENST00000637521.2_4	chr9	130452376	130453119	AL162426.1	-	lncRNA	chr9	130341648	130453165	STXBP1	+	protein_coding	743	opposite	5200_ID	chr9	130452377	130453119	743	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	20	20
11717	ENST00000624945.1_1	ENST00000333027.7_3	chr22	30374938	30424225	AC003681.1	-	lncRNA	chr22	30279157	30426855	MTMR3	+	protein_coding	84028	opposite	84_ID	chr22	30374939	30424225	49287	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	20
11884	ENST00000637876.1_4	ENST00000433360.6_3	chr7	94665042	94843644	PPP1R9A-AS1	-	lncRNA	chr7	94536905	94925712	PPP1R9A	+	protein_coding	178608	opposite	9618_ID	chr7	94665043	94843644	178602	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	20
12170	ENST00000650271.1_3	ENST00000649243.1_3	chrX	15645561	15693135	CLTRN	-	protein_coding	chrX	15579169	15693731	AC097625.1	-	nonsense_mediated_decay	47695	same	6670_ID	chrX	15645562	15693135	47574	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	20
12178	ENST00000650432.1_1	ENST00000244751.7_4	chr6	36736261	36742428	Z85996.2	+	lncRNA	chr6	36708551	36807220	CPNE5	-	protein_coding	6167	opposite	12952_ID	chr6	36736262	36742428	6167	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	20
12185	ENST00000650598.1_3	ENST00000586448.5_1	chr18	43071545	43083789	AC021517.3	-	lncRNA	chr18	42792959	43262940	SLC14A2	+	protein_coding	12244	opposite	1793_ID	chr18	43071546	43083789	12244	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
12212	ENST00000651100.1_1	ENST00000409261.6_6	chr2	133442796	133574469	AC010974.2	+	lncRNA	chr2	133429360	134326034	NCKAP5	-	protein_coding	131673	opposite	1167_ID	chr2	133442797	133574469	131673	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	20
12267	ENST00000652313.1_3	ENST00000330342.8_2	chr12	124197954	124207716	AC117503.5	-	lncRNA	chr12	124196899	124246302	ATP6V0A2	+	protein_coding	9762	opposite	3938_ID	chr12	124197955	124207716	9762	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	20
12283	ENST00000652546.1_3	ENST00000504592.5_3	chr4	102562102	102571131	AC084277.1	-	lncRNA	chr4	102341117	102995969	BANK1	+	protein_coding	9029	opposite	2742_ID	chr4	102562103	102571131	9029	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
12301	ENST00000652904.1_1	ENST00000670016.1_2	chr9	98828049	98859711	AL449403.1	+	lncRNA	chr9	98637972	98883436	ERCC6L2	+	nonsense_mediated_decay	36173	same	5643_ID	chr9	98828050	98859711	31662	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	20
12422	ENST00000655943.1_3	ENST00000281092.9_2	chr5	108500989	108522853	AC116428.1	-	lncRNA	chr5	108083597	108532542	FER	+	protein_coding	21864	opposite	3909_ID	chr5	108500990	108522853	21864	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	18	20
12585	ENST00000658918.1_3	ENST00000586448.5_1	chr18	43151370	43191505	AC091151.7	-	lncRNA	chr18	42792959	43262940	SLC14A2	+	protein_coding	40135	opposite	2983_ID	chr18	43151371	43191505	40135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
12721	ENST00000661895.1_3	ENST00000627582.3_2	chr1	172179850	172182639	AL137157.1	-	lncRNA	chr1	171810637	172381857	DNM3	+	protein_coding	2789	opposite	4943_ID	chr1	172179851	172182639	2789	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	20
12722	ENST00000661937.1_3	ENST00000670016.1_2	chr9	98868022	98878668	AL449403.2	-	lncRNA	chr9	98637972	98883436	ERCC6L2	+	nonsense_mediated_decay	10671	opposite	5644_ID	chr9	98868023	98878668	10646	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	20
12771	ENST00000662976.1_3	ENST00000641259.1_3	chr16	5646856	5666227	LINC01570	-	lncRNA	chr16	5289802	7761460	RBFOX1	+	protein_coding	19518	opposite	7653_ID	chr16	5646857	5666227	19371	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	20
12966	ENST00000667085.1_1	ENST00000296754.7_6	chr5	96139390	96141765	AC008906.2	+	lncRNA	chr5	96096513	96143803	ERAP1	-	protein_coding	2418	opposite	830_ID	chr5	96139391	96141765	2375	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	20
13008	ENST00000667942.1_3	ENST00000335750.7_2	chr14	80106096	80110774	AC008056.3	-	lncRNA	chr14	78636715	80334634	NRXN3	+	protein_coding	4678	opposite	686_ID	chr14	80106097	80110774	4678	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	20
13118	ENST00000670526.1_3	ENST00000254667.8_3	chr10	129825141	129827708	AL390236.1	-	lncRNA	chr10	129705366	129884119	PTPRE	+	protein_coding	2567	opposite	5550_ID	chr10	129825142	129827708	2567	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
13139	ENST00000670949.1_3	ENST00000649865.1_2	chr15	99382520	99383376	AC055807.1	-	lncRNA	chr15	99191767	99507759	IGF1R	+	protein_coding	856	opposite	2335_ID	chr15	99382521	99383376	856	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
13157	ENST00000671360.1_3	ENST00000318504.11_1	chrX	152093899	152095587	U82671.1	-	lncRNA	chrX	152082985	152142024	ZNF185	+	protein_coding	1688	opposite	12834_ID	chrX	152093900	152095587	1688	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	20
13205	ENST00000675181.1_1	ENST00000638800.1_1	chr1	203771221	203771320	AC114402.2	+	protein_coding	chr1	203764787	203824127	ZC3H11A	+	nonsense_mediated_decay	99	same	3862_ID	chr1	203771222	203771320	99	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	FALSE	3	20
39581	ENST00000429903.1_1	ENST00000398341.7_1	chr21	43928733	43929771	AP001625.1	+	lncRNA	chr21	43919741	44001550	SLC37A1	+	protein_coding	1038	same	6154_ID	chr21	43928734	43929771	1038	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	20
50801	ENST00000459240.1	ENST00000265271.7_2	chr5	145624753	145624816	RNU7-180P	-	snRNA	chr5	145583167	145668786	RBM27	+	protein_coding	63	opposite	11747_ID	chr5	145624754	145624816	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	20
55751	ENST00000488827.2	ENST00000646701.1_1	chr22	32153187	32153482	RN7SL20P	+	misc_RNA	chr22	32150884	32352230	Z82190.2	+	protein_coding	295	same	10022_ID	chr22	32153188	32153482	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
66281	ENST00000517100.1	ENST00000646701.1_1	chr22	32233223	32233284	RNU6-201P	+	snRNA	chr22	32150884	32352230	Z82190.2	+	protein_coding	61	same	11069_ID	chr22	32233224	32233284	61	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	20
98961	ENST00000585304.1	ENST00000428670.8_4	chr12	89986603	89986704	AC068641.1	+	miRNA	chr12	89981825	90102615	ATP2B1	-	protein_coding	101	opposite	2430_ID	chr12	89986604	89986704	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	20	20
121671	ENST00000650052.2_3	ENST00000393483.8_5	chr2	99758169	99768132	C2orf15	+	protein_coding	chr2	99613723	99771405	TSGA10	-	protein_coding	9963	opposite	6507_ID	chr2	99758170	99768132	9963	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	20
221	ENST00000278590.8_2	ENST00000645527.1_3	chr11	109964117	110042566	ZC3H12C	+	protein_coding	chr11	109735020	110167337	RDX	-	nonsense_mediated_decay	78449	opposite	13006_ID	chr11	109964118	110042566	78449	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	16	19
372	ENST00000308018.9_2	ENST00000599996.1_3	chr19	39421583	39423808	MRPS12	+	protein_coding	chr19	39406043	39440495	AC011455.2	-	protein_coding	2225	opposite	9168_ID	chr19	39421584	39423808	2225	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	19
514	ENST00000326448.12_4	ENST00000483754.1_3	chr3	159974773	160117013	IFT80	-	protein_coding	chr3	159945240	160167617	AC079594.1	-	nonsense_mediated_decay	142895	same	7333_ID	chr3	159974774	160117013	142240	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	19
603	ENST00000337334.7_3	ENST00000532462.5_3	chr14	51338770	51371688	ABHD12B	+	protein_coding	chr14	51324608	51411174	PYGL	-	protein_coding	32918	opposite	9_ID	chr14	51338771	51371688	32918	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	19
880	ENST00000362764.1	ENST00000460056.6_2	chr4	159316545	159316686	RNU4-79P	+	snRNA	chr4	159236462	159573364	RXFP1	+	protein_coding	141	same	10706_ID	chr4	159316546	159316686	141	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
884	ENST00000362776.1	ENST00000422774.2_5	chr7	138561104	138561211	RNU6-1272P	-	snRNA	chr7	138516125	138666135	KIAA1549	-	protein_coding	107	same	10966_ID	chr7	138561105	138561211	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	19
1036	ENST00000363650.1	ENST00000296543.10_3	chr4	140239531	140239640	RNU6-1214P	+	snRNA	chr4	140222658	140312538	NAA15	+	protein_coding	109	same	10916_ID	chr4	140239532	140239640	109	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
1109	ENST00000363999.1	ENST00000641259.1_3	chr16	6923899	6924006	RNU6-457P	+	snRNA	chr16	5289802	7761460	RBFOX1	+	protein_coding	107	same	11259_ID	chr16	6923900	6924006	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	19
1244	ENST00000364737.1	ENST00000433360.6_3	chr7	94727538	94727679	RNU4-16P	+	snRNA	chr7	94536905	94925712	PPP1R9A	+	protein_coding	141	same	10661_ID	chr7	94727539	94727679	141	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	19
1348	ENST00000365335.1	ENST00000261716.8_2	chr17	27772317	27772418	RNU6-1034P	-	snRNA	chr17	27717380	27878921	TAOK1	+	protein_coding	101	opposite	10782_ID	chr17	27772318	27772418	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
1351	ENST00000365357.1	ENST00000449090.6_1	chr2	48729060	48729163	RNU6-282P	-	snRNA	chr2	48667907	48742530	PPP1R21	+	protein_coding	103	opposite	11125_ID	chr2	48729061	48729163	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	19
1456	ENST00000369843.3_3	ENST00000667949.1_1	chr1	110171038	110172927	AL355310.2	-	lncRNA	chr1	110162434	110174675	AMPD2	+	protein_coding	1889	opposite	5327_ID	chr1	110171039	110172927	1889	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	19
1524	ENST00000375215.3_1	ENST00000317905.10_4	chr17	73629513	73637484	SMIM5	+	protein_coding	chr17	73622933	73663234	RECQL5	-	protein_coding	7971	opposite	12137_ID	chr17	73629514	73637484	7971	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	19
1592	ENST00000380055.6_4	ENST00000433700.5_1	chr9	26993133	27005670	LRRC19	-	protein_coding	chr9	26947036	27062923	IFT74	+	protein_coding	12537	opposite	7858_ID	chr9	26993134	27005670	12537	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	19
1647	ENST00000383866.1	ENST00000281092.9_2	chr5	108350534	108350641	RNU6-47P	-	snRNA	chr5	108083597	108532542	FER	+	protein_coding	107	opposite	11270_ID	chr5	108350535	108350641	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	19
1673	ENST00000383911.1	ENST00000409418.9_6	chr11	72580588	72580695	RNU6-672P	-	snRNA	chr11	72547789	72853363	FCHSD2	-	protein_coding	107	same	11423_ID	chr11	72580589	72580695	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	19
1787	ENST00000384222.1	ENST00000648156.1_1	chr8	67413439	67413546	RNU6-1324P	-	snRNA	chr8	67344720	67430759	AC009879.3	+	nonsense_mediated_decay	107	opposite	11007_ID	chr8	67413440	67413546	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	19
1921	ENST00000384606.1	ENST00000345239.6_3	chr5	74020923	74021029	RNU6-658P	-	snRNA	chr5	74017030	74062946	GFM2	-	protein_coding	106	same	11414_ID	chr5	74020924	74021029	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	19
1934	ENST00000384639.1	ENST00000297423.9_3	chr8	48580332	48580439	RNU6-665P	+	snRNA	chr8	48173529	48648868	SPIDR	+	protein_coding	107	same	11418_ID	chr8	48580333	48580439	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	19
1958	ENST00000384724.1	ENST00000333027.7_3	chr22	30295575	30295682	RNU6-331P	-	snRNA	chr22	30279157	30426855	MTMR3	+	protein_coding	107	opposite	11158_ID	chr22	30295576	30295682	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
2094	ENST00000384981.1	ENST00000504690.5_3	chr5	148441875	148441972	MIR584	-	miRNA	chr5	148303201	148442726	SH3TC2	-	nonsense_mediated_decay	97	same	8988_ID	chr5	148441876	148441972	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
2186	ENST00000385197.1	ENST00000612482.4_3	chr22	42296947	42297016	MIR33A	+	miRNA	chr22	42229082	42303311	SREBF2	+	protein_coding	69	same	8330_ID	chr22	42296948	42297016	69	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	19
2206	ENST00000385221.1	ENST00000265069.13_4	chr5	32394483	32394581	MIR579	-	miRNA	chr5	32354455	32444846	ZFR	-	protein_coding	98	same	8981_ID	chr5	32394484	32394581	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	19
2213	ENST00000385230.1	ENST00000558939.5_4	chr15	70371710	70371807	MIR629	-	miRNA	chr15	70340128	70390515	TLE3	-	protein_coding	97	same	9033_ID	chr15	70371711	70371807	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	19
2289	ENST00000390164.1	ENST00000513200.7_6	chr5	93914473	93914555	AC093311.1	+	miRNA	chr5	93488670	93954276	KIAA0825	-	protein_coding	82	opposite	3196_ID	chr5	93914474	93914555	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
2349	ENST00000390802.1	ENST00000316534.8_6	chr2	110884308	110884401	AC013268.1	-	miRNA	chr2	110879887	110962619	NPHP1	-	protein_coding	93	same	1429_ID	chr2	110884309	110884401	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	19
2361	ENST00000390868.1	ENST00000268206.12_4	chr15	82466564	82466726	RNU1-77P	-	snRNA	chr15	82422573	82555075	EFL1	-	protein_coding	162	same	10601_ID	chr15	82466565	82466726	162	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	19
2364	ENST00000390887.1	ENST00000641259.1_3	chr16	7054007	7054113	RNU6-328P	-	snRNA	chr16	5289802	7761460	RBFOX1	+	protein_coding	106	opposite	11156_ID	chr16	7054008	7054113	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	19
2526	ENST00000398177.2_2	ENST00000261776.10_4	chr16	70788937	70807145	VAC14-AS1	+	lncRNA	chr16	70721341	70835061	VAC14	-	protein_coding	18217	opposite	12886_ID	chr16	70788938	70807145	18208	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	19
2649	ENST00000408089.1	ENST00000066544.8_5	chr17	45195867	45195957	AC002558.1	+	miRNA	chr17	45195068	45266661	CDC27	-	protein_coding	90	opposite	72_ID	chr17	45195868	45195957	90	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	19	19
2650	ENST00000408091.1	ENST00000622267.1_7	chr8	39613600	39613707	AC136365.1	-	miRNA	chr8	39601256	39695808	ADAM2	-	protein_coding	107	same	4150_ID	chr8	39613601	39613707	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	19
2725	ENST00000408303.1	ENST00000323929.8_5	chr11	94199660	94199746	MIR548L	-	miRNA	chr11	94148735	94227010	MRE11	-	protein_coding	86	same	8909_ID	chr11	94199661	94199746	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	19
2731	ENST00000408330.1	ENST00000641259.1_3	chr16	5810687	5810789	AC012175.1	-	miRNA	chr16	5289802	7761460	RBFOX1	+	protein_coding	102	opposite	1341_ID	chr16	5810688	5810789	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	19
2812	ENST00000408517.1	ENST00000512626.2_3	chr15	32685590	32685673	AC139426.1	-	miRNA	chr15	32684982	32695396	GOLGA8K	-	protein_coding	83	same	4205_ID	chr15	32685591	32685673	83	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	19
2865	ENST00000408634.1	ENST00000612871.4_5	chr7	36681751	36681849	AC087069.1	-	miRNA	chr7	36552556	36764154	AOAH	-	protein_coding	98	same	2779_ID	chr7	36681752	36681849	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	19
2880	ENST00000408666.1	ENST00000562783.1_2	chr15	30854012	30854095	AC026150.2	+	miRNA	chr15	30844280	30854704	GOLGA8Q	+	protein_coding	83	same	2118_ID	chr15	30854013	30854095	83	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	19
2935	ENST00000408796.1	ENST00000327271.10_3	chr15	30696551	30696634	AC019322.1	-	miRNA	chr15	30695942	30706365	GOLGA8R	-	protein_coding	83	same	1703_ID	chr15	30696552	30696634	83	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	19
2961	ENST00000408858.1	ENST00000569052.1_2	chr15	30437079	30437162	AC120045.2	+	miRNA	chr15	30427351	30437770	GOLGA8T	+	protein_coding	83	same	3958_ID	chr15	30437080	30437162	83	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	19
2976	ENST00000408882.1	ENST00000641259.1_3	chr16	5313223	5313372	AC074051.1	-	miRNA	chr16	5289802	7761460	RBFOX1	+	protein_coding	149	opposite	2567_ID	chr16	5313224	5313372	149	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
3009	ENST00000410136.1	ENST00000409261.6_6	chr2	134148680	134148970	RN7SKP154	-	misc_RNA	chr2	133429360	134326034	NCKAP5	-	protein_coding	290	same	9792_ID	chr2	134148681	134148970	290	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	19
3069	ENST00000410411.1	ENST00000558014.5_3	chr15	47564793	47565086	RN7SKP139	+	misc_RNA	chr15	47476297	48066418	SEMA6D	+	protein_coding	293	same	9786_ID	chr15	47564794	47565086	293	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
3174	ENST00000410876.1	ENST00000392476.6_3	chr17	75148642	75148756	RNU4-47P	-	snRNA	chr17	75084830	75212884	SEC14L1	+	protein_coding	114	opposite	10684_ID	chr17	75148643	75148756	114	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	19
3188	ENST00000410962.1	ENST00000376511.7_4	chr6	30584005	30584082	AL662800.1	-	miRNA	chr6	30568189	30585020	PPP1R10	-	protein_coding	77	same	5871_ID	chr6	30584006	30584082	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	19
3199	ENST00000411029.1	ENST00000265069.13_4	chr5	32379512	32379573	AC008949.1	-	miRNA	chr5	32354455	32444846	ZFR	-	protein_coding	61	same	836_ID	chr5	32379513	32379573	61	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	19
3250	ENST00000411348.1	ENST00000379406.8_2	chr13	41928692	41928795	RNU6-57P	-	snRNA	chr13	41885402	41951166	NAA16	+	protein_coding	103	opposite	11351_ID	chr13	41928693	41928795	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	19
3263	ENST00000411390.2	ENST00000367467.8_2	chr6	148845288	148845376	AL033378.1	-	miRNA	chr6	148663973	148873180	SASH1	+	protein_coding	88	opposite	4571_ID	chr6	148845289	148845376	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	19
3271	ENST00000411427.3_4	ENST00000398600.6_2	chr21	42812982	42817635	AP001610.2	-	lncRNA	chr21	42792441	42831141	MX1	+	protein_coding	4653	opposite	6150_ID	chr21	42812983	42817635	4653	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	19
3343	ENST00000412954.1_3	ENST00000355286.12_4	chr6	133756214	133760602	AL024497.1	-	lncRNA	chr6	133562494	133853266	EYA4	+	protein_coding	4388	opposite	4500_ID	chr6	133756215	133760602	4388	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	19
3434	ENST00000415146.1_3	ENST00000412402.5_1	chr7	114054298	114059930	AC073626.1	-	lncRNA	chr7	113726381	114330960	FOXP2	+	nonsense_mediated_decay	5632	opposite	2540_ID	chr7	114054299	114059930	5632	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	19
3464	ENST00000415917.2_3	ENST00000399449.3_3	chr10	75463492	75473267	AC022400.4	-	lncRNA	chr10	75434052	75490224	BMS1P4-AGAP5	-	lncRNA	9847	same	1856_ID	chr10	75463493	75473267	9775	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	19
3470	ENST00000416046.2_1	ENST00000408903.7_4	chr5	112658724	112772038	AC079465.1	+	lncRNA	chr5	112357802	112824150	MCC	-	protein_coding	114147	opposite	2663_ID	chr5	112658725	112772038	113314	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	19
3485	ENST00000416437.1_3	ENST00000409261.6_6	chr2	134189236	134191468	NCKAP5-IT1	-	lncRNA	chr2	133429360	134326034	NCKAP5	-	protein_coding	2232	same	9242_ID	chr2	134189237	134191468	2232	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	19
3618	ENST00000420184.1_1	ENST00000409261.6_6	chr2	134311885	134315798	AC011243.1	+	lncRNA	chr2	133429360	134326034	NCKAP5	-	protein_coding	3913	opposite	1181_ID	chr2	134311886	134315798	3913	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	19
3666	ENST00000421585.1_1	ENST00000649243.1_3	chrX	15621003	15639607	GS1-594A7.3	+	lncRNA	chrX	15579169	15693731	AC097625.1	-	nonsense_mediated_decay	18604	opposite	7188_ID	chrX	15621004	15639607	18604	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	19
3669	ENST00000421637.1_1	ENST00000306052.12_6	chr1	53753695	53755378	AL355483.1	+	lncRNA	chr1	53708035	53793742	LRP8	-	protein_coding	1683	opposite	5339_ID	chr1	53753696	53755378	1683	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	19
3680	ENST00000421851.1_3	ENST00000367696.7_4	chr1	173978404	173985344	RC3H1-IT1	-	lncRNA	chr1	173900221	173991495	RC3H1	-	protein_coding	6940	same	9725_ID	chr1	173978405	173985344	6940	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
3715	ENST00000422652.5_4	ENST00000673810.1_1	chr11	57510989	57519253	BTBD18	-	protein_coding	chr11	57480055	57585903	AP001931.2	+	nonsense_mediated_decay	8268	opposite	6436_ID	chr11	57510990	57519253	8264	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
3788	ENST00000424510.1_1	ENST00000409261.6_6	chr2	133673129	133689067	NCKAP5-AS1	+	lncRNA	chr2	133429360	134326034	NCKAP5	-	protein_coding	15938	opposite	9240_ID	chr2	133673130	133689067	15938	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	19
3844	ENST00000426030.2_1	ENST00000367669.8_7	chr1	175986412	175987896	AL590723.1	+	lncRNA	chr1	175913966	176176422	COP1	-	protein_coding	1484	opposite	5781_ID	chr1	175986413	175987896	1484	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	19
3951	ENST00000429871.1_1	ENST00000349533.11_4	chr1	65952088	65959871	AC119800.1	+	lncRNA	chr1	65886350	66107242	LEPR	+	protein_coding	7783	same	3955_ID	chr1	65952089	65959871	7783	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	19
4004	ENST00000431103.1_3	ENST00000374360.8_4	chrX	69672811	69675844	DLG3-AS1	-	lncRNA	chrX	69664684	69725340	DLG3	+	protein_coding	3037	opposite	6812_ID	chrX	69672812	69675844	3033	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	19
4165	ENST00000435739.1_3	ENST00000263441.11_1	chr1	65745138	65772204	AL139294.1	-	lncRNA	chr1	65730376	65881552	DNAJC6	+	protein_coding	27066	opposite	5032_ID	chr1	65745139	65772204	27066	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
4167	ENST00000435782.1_3	ENST00000368854.7_3	chr10	125673089	125691113	AC068058.1	-	lncRNA	chr10	125465722	125699783	CPXM2	-	processed_transcript	20119	same	2390_ID	chr10	125673090	125691113	18024	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	19
4232	ENST00000437426.1_3	ENST00000291539.11_4	chr21	44153703	44161868	PDE9A-AS1	-	lncRNA	chr21	44073730	44195619	PDE9A	+	protein_coding	8165	opposite	9527_ID	chr21	44153704	44161868	8165	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	19
4236	ENST00000437499.1_1	ENST00000366543.5_6	chr1	243327939	243332747	AL606534.2	+	lncRNA	chr1	243287729	243418623	CEP170	-	protein_coding	4808	opposite	5838_ID	chr1	243327940	243332747	4808	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	19
4239	ENST00000437680.1_3	ENST00000402538.7_2	chr2	33780113	33788614	RASGRP3-AS1	-	lncRNA	chr2	33661390	33789817	RASGRP3	+	protein_coding	8501	opposite	9706_ID	chr2	33780114	33788614	8501	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	16	19
4276	ENST00000438893.2_1	ENST00000652248.1_3	chr22	24994020	24995365	AP000356.1	+	lncRNA	chr22	24951974	25024954	AP000356.5	+	nonsense_mediated_decay	1345	same	5982_ID	chr22	24994021	24995365	1345	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	19
4288	ENST00000439182.2_2	ENST00000644092.1_1	chr2	47754909	47762338	MSH2-OT1	+	lncRNA	chr2	47630257	47890285	MSH2	+	nonsense_mediated_decay	8192	same	9175_ID	chr2	47754910	47762338	7429	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	19
4306	ENST00000439562.1_1	ENST00000366543.5_6	chr1	243299199	243303890	AL606534.1	+	lncRNA	chr1	243287729	243418623	CEP170	-	protein_coding	4691	opposite	5837_ID	chr1	243299200	243303890	4691	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	19
4333	ENST00000440376.1_3	ENST00000458257.5_1	chr7	30836306	30843026	AC004691.1	-	lncRNA	chr7	30791752	30931696	INMT-MINDY4	+	nonsense_mediated_decay	6720	opposite	157_ID	chr7	30836307	30843026	6720	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	19
4375	ENST00000441586.2_1	ENST00000604030.7_5	chr4	152198322	152212605	PRSS48	+	protein_coding	chr4	152041432	152246757	SH3D19	-	protein_coding	14283	opposite	9659_ID	chr4	152198323	152212605	14283	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
4414	ENST00000442482.1_3	ENST00000422861.3_6	chr20	42178028	42179589	Z98752.1	-	lncRNA	chr20	42143080	42179594	L3MBTL1	+	protein_coding	1561	opposite	12976_ID	chr20	42178029	42179589	1561	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	19	19
4556	ENST00000446888.1_1	ENST00000368854.7_3	chr10	125536185	125537265	AC009987.1	+	lncRNA	chr10	125465722	125699783	CPXM2	-	processed_transcript	42965	opposite	1016_ID	chr10	125536186	125537265	1080	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	19
4557	ENST00000446942.5_3	ENST00000652248.1_3	chr22	24981587	24989033	LRRC75B	-	nonsense_mediated_decay	chr22	24951974	25024954	AP000356.5	+	nonsense_mediated_decay	7588	opposite	7867_ID	chr22	24981588	24989033	7446	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	19
4634	ENST00000449034.1_1	ENST00000649812.1_3	chr1	21619782	21626267	ECE1-AS1	+	lncRNA	chr1	21543773	21672065	ECE1	-	protein_coding	6585	opposite	6868_ID	chr1	21619783	21626267	6485	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
4650	ENST00000449672.1_3	ENST00000612871.4_5	chr7	36637439	36639726	AOAH-IT1	-	lncRNA	chr7	36552556	36764154	AOAH	-	protein_coding	2287	same	5960_ID	chr7	36637440	36639726	2287	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	19
4776	ENST00000453039.1_1	ENST00000233190.11_5	chr2	206980270	206987047	AC007383.2	+	lncRNA	chr2	206979540	207024168	NDUFS1	-	protein_coding	6777	opposite	558_ID	chr2	206980271	206987047	6777	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	19	19
4785	ENST00000453199.2_4	ENST00000259351.10_4	chr9	129976067	129984186	AL450263.1	-	lncRNA	chr9	129677060	129985445	RALGPS1	+	protein_coding	8125	opposite	5651_ID	chr9	129976068	129984186	8119	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	18	19
4893	ENST00000456198.1_3	ENST00000433700.5_1	chr9	26955777	26956293	IFT74-AS1	-	lncRNA	chr9	26947036	27062923	IFT74	+	protein_coding	516	opposite	7332_ID	chr9	26955778	26956293	516	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
5043	ENST00000459082.1	ENST00000563027.1_3	chr15	28947707	28947790	AC055876.2	-	miRNA	chr15	28947099	28957469	GOLGA8M	-	protein_coding	83	same	2341_ID	chr15	28947708	28947790	83	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	19
5076	ENST00000459240.1	ENST00000506502.2_1	chr5	145624753	145624816	RNU7-180P	-	snRNA	chr5	145583112	145718814	AC091959.1	+	protein_coding	63	opposite	11748_ID	chr5	145624754	145624816	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	19
5126	ENST00000459538.1	ENST00000415447.5_5	chr22	29729151	29729247	SNORD125	-	snoRNA	chr22	29724809	29819168	AP1B1	-	protein_coding	96	same	12366_ID	chr22	29729152	29729247	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	19
5142	ENST00000459619.1	ENST00000450802.3	chr15	23264865	23264948	AC091565.1	+	miRNA	chr15	23255241	23268823	GOLGA8I	+	protein_coding	83	same	3006_ID	chr15	23264866	23264948	83	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	19
5151	ENST00000460504.2	ENST00000371591.2_4	chr1	52615776	52616089	RN7SL788P	+	misc_RNA	chr1	52607883	52814343	ZFYVE9	+	protein_coding	313	same	10431_ID	chr1	52615777	52616089	313	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
5240	ENST00000466576.2_3	ENST00000373191.9_2	chr1	36457709	36479118	AL138787.2	-	lncRNA	chr1	36396705	36538101	AGO3	+	protein_coding	21522	opposite	4973_ID	chr1	36457710	36479118	21409	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	19
5253	ENST00000467429.2	ENST00000650623.2_4	chr10	121527758	121528052	RN7SL846P	+	misc_RNA	chr10	121485561	121588659	INPP5F	+	protein_coding	294	same	10475_ID	chr10	121527759	121528052	294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	19
5264	ENST00000468131.2	ENST00000325590.9_3	chr7	38570642	38570939	RN7SL83P	-	misc_RNA	chr7	38423304	38671020	AMPH	-	protein_coding	297	same	10471_ID	chr7	38570643	38570939	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	19
5291	ENST00000469955.2	ENST00000455997.5_1	chr3	45784166	45784460	RN7SL145P	+	misc_RNA	chr3	45730677	45786899	SACM1L	+	nonsense_mediated_decay	294	same	9975_ID	chr3	45784167	45784460	294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	19
5337	ENST00000472619.2_2	ENST00000310823.8_5	chr2	9641594	9652542	AC080162.1	+	lncRNA	chr2	9628614	9695959	ADAM17	-	protein_coding	10948	opposite	2706_ID	chr2	9641595	9652542	10948	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	19
5382	ENST00000475395.2_3	ENST00000328834.9_3	chr3	32772126	32778946	CNOT10-AS1	-	lncRNA	chr3	32726636	32815367	CNOT10	+	protein_coding	6820	opposite	6677_ID	chr3	32772127	32778946	6820	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	19
5401	ENST00000476561.2_3	ENST00000285871.5_5	chr7	76875656	76887440	AC098851.1	-	lncRNA	chr7	76751931	76924521	CCDC146	+	protein_coding	11784	opposite	3346_ID	chr7	76875657	76887440	11784	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	19
5767	ENST00000502566.1_3	ENST00000460056.6_2	chr4	159411917	159431060	AC121161.2	-	lncRNA	chr4	159236462	159573364	RXFP1	+	protein_coding	19143	opposite	3967_ID	chr4	159411918	159431060	19143	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	19
5824	ENST00000504686.2_3	ENST00000261439.9_2	chr4	37962018	37962749	PTTG2	+	protein_coding	chr4	37892704	38140794	TBC1D1	+	protein_coding	731	same	9683_ID	chr4	37962019	37962749	731	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	19
6018	ENST00000510682.1_1	ENST00000343348.11_5	chr5	115785319	115843972	SEMA6A-AS1	+	lncRNA	chr5	115779250	115910519	SEMA6A	-	protein_coding	60730	opposite	12034_ID	chr5	115785320	115843972	58653	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	19
6023	ENST00000510935.1_3	ENST00000281092.9_2	chr5	108153741	108166491	AC008871.1	-	lncRNA	chr5	108083597	108532542	FER	+	protein_coding	12750	opposite	822_ID	chr5	108153742	108166491	12750	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	19
6085	ENST00000512502.5_2	ENST00000264399.5_3	chr4	82086093	82114549	PRKG2-AS1	+	lncRNA	chr4	82008523	82136271	PRKG2	-	protein_coding	28474	opposite	9639_ID	chr4	82086094	82114549	28456	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	19
6132	ENST00000514061.2_3	ENST00000513200.7_6	chr5	93947610	93953827	AC025766.1	-	lncRNA	chr5	93488670	93954276	KIAA0825	-	protein_coding	6217	same	2106_ID	chr5	93947611	93953827	6217	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
6194	ENST00000515888.1	ENST00000614641.4_1	chr9	34478619	34478903	RN7SKP24	+	misc_RNA	chr9	34458749	34520986	DNAI1	+	protein_coding	284	same	9848_ID	chr9	34478620	34478903	284	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
6201	ENST00000515903.1	ENST00000320356.7_5	chr7	148518103	148518165	RNU7-20P	+	snRNA	chr7	148504474	148581383	EZH2	-	protein_coding	62	opposite	11766_ID	chr7	148518104	148518165	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	19
6242	ENST00000516018.1	ENST00000610355.4_5	chr4	47813480	47813652	RN7SKP215	-	misc_RNA	chr4	47596015	47840123	CORIN	-	protein_coding	172	same	9826_ID	chr4	47813481	47813652	172	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
6245	ENST00000516033.1	ENST00000504690.5_3	chr5	148437116	148437219	RNU6-732P	-	snRNA	chr5	148303201	148442726	SH3TC2	-	nonsense_mediated_decay	103	same	11461_ID	chr5	148437117	148437219	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
6327	ENST00000516257.1	ENST00000396328.5_4	chr15	53944173	53944320	RNU2-53P	+	snRNA	chr15	53805937	54055075	WDR72	-	protein_coding	147	opposite	10644_ID	chr15	53944174	53944320	147	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	19
6330	ENST00000516271.1	ENST00000641259.1_3	chr16	6798908	6798970	RNU7-99P	+	snRNA	chr16	5289802	7761460	RBFOX1	+	protein_coding	62	same	11823_ID	chr16	6798909	6798970	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	19
6486	ENST00000516735.1	ENST00000604030.7_5	chr4	152221669	152221765	RNU6-1282P	+	snRNA	chr4	152041432	152246757	SH3D19	-	protein_coding	96	opposite	10977_ID	chr4	152221670	152221765	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
6533	ENST00000516879.1	ENST00000409261.6_6	chr2	134091400	134091502	RNU6-579P	+	snRNA	chr2	133429360	134326034	NCKAP5	-	protein_coding	102	opposite	11350_ID	chr2	134091401	134091502	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	19
6543	ENST00000516904.1	ENST00000339594.9_4	chr7	72921537	72921604	RNU6-1198P	+	snRNA	chr7	72854735	72936623	BAZ1B	-	protein_coding	67	opposite	10902_ID	chr7	72921538	72921604	67	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	19
6620	ENST00000517097.1	ENST00000367669.8_7	chr1	175937533	175937676	SCARNA3	-	snoRNA	chr1	175913966	176176422	COP1	-	protein_coding	143	same	11996_ID	chr1	175937534	175937676	143	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	19
6688	ENST00000517255.1	ENST00000261716.8_2	chr17	27751779	27751885	RNU6-711P	-	snRNA	chr17	27717380	27878921	TAOK1	+	protein_coding	106	opposite	11445_ID	chr17	27751780	27751885	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
6854	ENST00000521706.1_3	ENST00000414645.6_2	chr8	95803870	95805191	AP003692.1	-	lncRNA	chr8	95732127	95806064	DPY19L4	+	protein_coding	1464	opposite	6269_ID	chr8	95803871	95805191	1321	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	19	19
7067	ENST00000529323.1_3	ENST00000300738.10_2	chr11	4158345	4159487	RRM1-AS1	-	lncRNA	chr11	4116028	4160162	RRM1	+	protein_coding	1142	opposite	11965_ID	chr11	4158346	4159487	1142	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	19	19
7107	ENST00000530733.1_1	ENST00000440460.7_2	chr11	111886030	111886848	AP000907.2	+	lncRNA	chr11	111808066	111893377	DIXDC1	+	protein_coding	818	same	6050_ID	chr11	111886031	111886848	818	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	19
7275	ENST00000538795.1	ENST00000271643.8_4	chr1	150521896	150524367	AL356356.1	+	protein_coding	chr1	150521844	150533408	ADAMTSL4	+	protein_coding	2471	same	5385_ID	chr1	150521897	150524367	2471	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	19
7318	ENST00000541092.1_3	ENST00000323929.8_5	chr11	94206073	94206736	AP000786.1	-	lncRNA	chr11	94148735	94227010	MRE11	-	protein_coding	663	same	6029_ID	chr11	94206074	94206736	663	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	19
7375	ENST00000544667.1_1	ENST00000339824.7_6	chr12	118327258	118328813	AC084291.1	+	lncRNA	chr12	117890816	118406795	KSR2	-	protein_coding	1555	opposite	2743_ID	chr12	118327259	118328813	1555	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
7439	ENST00000547346.1_1	ENST00000552789.5_3	chr12	96419100	96421749	AC007298.1	+	lncRNA	chr12	96394607	96437255	LTA4H	-	protein_coding	2649	opposite	540_ID	chr12	96419101	96421749	2649	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	19
7488	ENST00000549303.1_1	ENST00000641259.1_3	chr16	6106975	6142955	AC009135.1	+	lncRNA	chr16	5289802	7761460	RBFOX1	+	protein_coding	35980	same	901_ID	chr16	6106976	6142955	35980	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	19
7583	ENST00000553712.1_1	ENST00000328459.11_4	chr14	91163676	91165718	AL139193.2	+	lncRNA	chr14	90990907	91282774	TTC7B	-	protein_coding	2042	opposite	5016_ID	chr14	91163677	91165718	2042	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	19
7613	ENST00000554532.2_3	ENST00000356924.9_4	chr14	74755829	74761128	AC005519.1	-	lncRNA	chr14	74751971	74769637	ABCD4	-	protein_coding	5299	same	301_ID	chr14	74755830	74761128	5299	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	19
7626	ENST00000554967.1_1	ENST00000328459.11_4	chr14	91141461	91142638	AL139193.1	+	lncRNA	chr14	90990907	91282774	TTC7B	-	protein_coding	1177	opposite	5015_ID	chr14	91141462	91142638	1177	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	19
7640	ENST00000555444.2_1	ENST00000556564.6_4	chr14	88965677	88981846	AL162171.2	+	lncRNA	chr14	88932121	89021351	PTPN21	-	protein_coding	16169	opposite	5184_ID	chr14	88965678	88981846	16169	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	19
7665	ENST00000556126.2_1	ENST00000317905.10_4	chr17	73642322	73644055	SMIM6	+	protein_coding	chr17	73622933	73663234	RECQL5	-	protein_coding	1733	opposite	12138_ID	chr17	73642323	73644055	1733	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	19
7712	ENST00000557622.1_1	ENST00000328459.11_4	chr14	91033838	91036320	AL096869.1	+	lncRNA	chr14	90990907	91282774	TTC7B	-	protein_coding	4836	opposite	4691_ID	chr14	91033839	91036320	2482	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	19
7733	ENST00000558185.1_3	ENST00000558014.5_3	chr15	47896076	47898549	AC012050.1	-	lncRNA	chr15	47476297	48066418	SEMA6D	+	protein_coding	53878	opposite	1321_ID	chr15	47896077	47898549	2473	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	19
7736	ENST00000558208.1_3	ENST00000303329.9_3	chr15	80846949	80855285	AC108451.1	-	lncRNA	chr15	80696723	80890274	ARNT2	+	protein_coding	8336	opposite	3734_ID	chr15	80846950	80855285	8336	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	19
7742	ENST00000558258.1_1	ENST00000558014.5_3	chr15	47817365	47819953	AC009558.2	+	lncRNA	chr15	47476297	48066418	SEMA6D	+	protein_coding	2588	same	975_ID	chr15	47817366	47819953	2588	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	19
7809	ENST00000559799.5_3	ENST00000558014.5_3	chr15	47651626	47688929	AC023905.1	-	lncRNA	chr15	47476297	48066418	SEMA6D	+	protein_coding	37303	opposite	1983_ID	chr15	47651627	47688929	37303	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
7867	ENST00000561174.1_3	ENST00000558014.5_3	chr15	47689697	47691751	AC009558.1	-	lncRNA	chr15	47476297	48066418	SEMA6D	+	protein_coding	2054	opposite	974_ID	chr15	47689698	47691751	2054	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
7872	ENST00000561254.1_1	ENST00000558014.5_3	chr15	47566379	47567361	AC084882.1	+	lncRNA	chr15	47476297	48066418	SEMA6D	+	protein_coding	32961	same	2778_ID	chr15	47566380	47567361	982	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
8018	ENST00000564076.1_1	ENST00000641259.1_3	chr16	6623767	6627360	AC007223.1	+	lncRNA	chr16	5289802	7761460	RBFOX1	+	protein_coding	3593	same	530_ID	chr16	6623768	6627360	3593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	19
8071	ENST00000565247.1_3	ENST00000641259.1_3	chr16	7664231	7664994	AC005774.2	-	lncRNA	chr16	5289802	7761460	RBFOX1	+	protein_coding	763	opposite	355_ID	chr16	7664232	7664994	763	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	19
8156	ENST00000566990.1_3	ENST00000281282.6_2	chr15	57819384	57821207	AC025271.2	-	lncRNA	chr15	57668702	57842915	CGNL1	+	protein_coding	1823	opposite	2071_ID	chr15	57819385	57821207	1823	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	19
8160	ENST00000567077.1_1	ENST00000568954.5_7	chr16	71688929	71698115	AC009097.1	+	lncRNA	chr16	71678826	71758604	PHLPP2	-	protein_coding	9186	opposite	875_ID	chr16	71688930	71698115	9186	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	19
8199	ENST00000567925.1_1	ENST00000637504.1_2	chr11	68870960	68876562	AP003071.1	+	lncRNA	chr11	68816399	68903784	TPCN2	+	protein_coding	5602	same	6235_ID	chr11	68870961	68876562	5602	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	19	19
8334	ENST00000572193.1_1	ENST00000066544.8_5	chr17	45247191	45248415	AC002558.2	+	lncRNA	chr17	45195068	45266661	CDC27	-	protein_coding	1224	opposite	73_ID	chr17	45247192	45248415	1224	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	19
8343	ENST00000572792.1_3	ENST00000537505.6_2	chr17	5267609	5274921	AC015727.1	-	lncRNA	chr17	5185578	5289660	RABEP1	+	protein_coding	7312	opposite	1475_ID	chr17	5267610	5274921	7312	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	19
8540	ENST00000577704.1_1	ENST00000317931.12_5	chr18	5956099	5960784	AP001021.2	+	lncRNA	chr18	5954715	6414910	L3MBTL4	-	protein_coding	4685	opposite	6069_ID	chr18	5956100	5960784	4685	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	18	19
8545	ENST00000577710.1	ENST00000263187.4_2	chr1	76308316	76308402	AL445464.1	+	miRNA	chr1	76262566	76378927	MSH4	+	protein_coding	86	same	5625_ID	chr1	76308317	76308402	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	19
8591	ENST00000577947.1	ENST00000621332.5_3	chr17	36875943	36876001	MIR4726	+	miRNA	chr17	36861525	36886048	MLLT6	+	protein_coding	58	same	8715_ID	chr17	36875944	36876001	58	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	19
8625	ENST00000578185.1	ENST00000613394.4_5	chr10	100191048	100191117	MIR4685	-	miRNA	chr10	100175955	100206704	HPS1	-	protein_coding	69	same	8672_ID	chr10	100191049	100191117	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	19
8729	ENST00000578818.1	ENST00000430799.7_4	chr1	27090114	27090393	RN7SL501P	+	misc_RNA	chr1	27019726	27107668	ARID1A	+	protein_coding	279	same	10234_ID	chr1	27090115	27090393	279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	19
8744	ENST00000578930.1	ENST00000336714.8_2	chr20	18526351	18526428	AL121893.1	-	miRNA	chr20	18488163	18542059	SEC23B	+	protein_coding	77	opposite	4767_ID	chr20	18526352	18526428	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	19
8775	ENST00000579078.1	ENST00000646630.1_3	chr6	33406107	33406214	MIR5004	+	miRNA	chr6	33387841	33421466	SYNGAP1	+	protein_coding	107	same	8808_ID	chr6	33406108	33406214	107	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	19
8921	ENST00000579926.1	ENST00000556440.7_4	chr17	62526892	62526975	AC009994.2	-	miRNA	chr17	62503094	62534064	CEP95	+	protein_coding	83	opposite	1017_ID	chr17	62526893	62526975	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	19
9050	ENST00000580648.1	ENST00000250572.12_5	chr19	6895732	6895814	AC020895.1	+	miRNA	chr19	6887576	6940470	ADGRE1	+	protein_coding	82	same	1742_ID	chr19	6895733	6895814	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	19
9074	ENST00000580775.1	ENST00000395952.8_4	chr6	31668805	31668868	MIR4646	-	miRNA	chr6	31654731	31671101	ABHD16A	-	protein_coding	63	same	8631_ID	chr6	31668806	31668868	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	19
9154	ENST00000581178.1	ENST00000637504.1_2	chr11	68850643	68850726	MIR3164	+	miRNA	chr11	68816399	68903784	TPCN2	+	protein_coding	83	same	8286_ID	chr11	68850644	68850726	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	19
9252	ENST00000581824.1	ENST00000324771.12_2	chr6	30858659	30858749	MIR4640	+	miRNA	chr6	30848625	30867931	DDR1	+	protein_coding	90	same	8626_ID	chr6	30858660	30858749	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	19
9391	ENST00000582591.1_1	ENST00000677752.1_1	chr18	2967015	2985408	AP000919.2	+	lncRNA	chr18	2916996	3013142	LPIN2	-	protein_coding	18393	opposite	6054_ID	chr18	2967016	2985408	18393	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
9430	ENST00000582777.1	ENST00000339861.8_6	chr9	92112852	92112936	AL590233.1	+	miRNA	chr9	91975701	92112953	SEMA4D	-	protein_coding	84	opposite	5755_ID	chr9	92112853	92112936	84	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	19
9506	ENST00000583188.1	ENST00000303329.9_3	chr15	80873443	80873580	hsa-mir-5572	+	miRNA	chr15	80696723	80890274	ARNT2	+	protein_coding	137	same	7302_ID	chr15	80873444	80873580	137	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	19
9516	ENST00000583236.1_1	ENST00000261708.9_4	chr17	30200944	30213685	AC004253.1	+	lncRNA	chr17	30187922	30228727	UTP6	-	protein_coding	12741	opposite	121_ID	chr17	30200945	30213685	12741	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	19
9652	ENST00000584029.1	ENST00000512055.5_5	chr3	131704698	131704775	MIR5704	-	miRNA	chr3	131252408	132004254	CPNE4	-	protein_coding	77	same	8973_ID	chr3	131704699	131704775	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	19
9749	ENST00000584534.1	ENST00000389120.8_2	chr9	104311967	104312053	AL591377.1	-	miRNA	chr9	104296134	104325626	RNF20	+	protein_coding	86	opposite	5791_ID	chr9	104311968	104312053	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	19
9828	ENST00000585007.1	ENST00000317907.9_2	chr2	32860321	32860398	MIR4765	+	miRNA	chr2	32853116	33046118	TTC27	+	protein_coding	77	same	8752_ID	chr2	32860322	32860398	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	19
9907	ENST00000585646.1_3	ENST00000268876.9_2	chr17	33491261	33494031	AC022916.4	-	lncRNA	chr17	33474835	33516364	UNC45B	+	protein_coding	2770	opposite	1918_ID	chr17	33491262	33494031	2770	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	19
10056	ENST00000590383.4_5	ENST00000264720.7_3	chr2	27558399	27565466	GTF3C2-AS1	+	lncRNA	chr2	27548715	27579901	GTF3C2	-	protein_coding	7080	opposite	7199_ID	chr2	27558400	27565466	7067	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	19
10065	ENST00000590626.1_3	ENST00000357355.7_1	chr19	14513528	14519535	AC008569.1	-	lncRNA	chr19	14492246	14519537	ADGRE5	+	protein_coding	6007	opposite	748_ID	chr19	14513529	14519535	6007	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	19
10182	ENST00000594617.7_5	ENST00000355502.7_4	chr19	18319461	18359010	PDE4C	-	protein_coding	chr19	18318770	18366229	AC008397.2	-	protein_coding	39549	same	9525_ID	chr19	18319462	18359010	39549	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	4	19
10229	ENST00000596384.1	ENST00000409261.6_6	chr2	133874576	133876625	AC011755.1	+	protein_coding	chr2	133429360	134326034	NCKAP5	-	protein_coding	2049	opposite	1293_ID	chr2	133874577	133876625	2049	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	19
10277	ENST00000597463.1	ENST00000309295.9_2	chr11	65358664	65359947	AP001362.1	-	protein_coding	chr11	65343523	65360121	EHBP1L1	+	protein_coding	1283	opposite	6122_ID	chr11	65358665	65359947	1283	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	17	19
10340	ENST00000599320.2_1	ENST00000599996.1_3	chr19	39425936	39429272	ERVK9-11	-	lncRNA	chr19	39406043	39440495	AC011455.2	-	protein_coding	3336	same	6931_ID	chr19	39425937	39429272	3336	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	19
10387	ENST00000600959.1_3	ENST00000599564.5_3	chr19	35489136	35491074	AC020907.3	-	lncRNA	chr19	35485687	35517375	GRAMD1A	+	protein_coding	1938	opposite	1744_ID	chr19	35489137	35491074	1938	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	19
10468	ENST00000602578.1_1	ENST00000297423.9_3	chr8	48439958	48440710	AC024451.4	+	lncRNA	chr8	48173529	48648868	SPIDR	+	protein_coding	752	same	2016_ID	chr8	48439959	48440710	752	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	19
10469	ENST00000602595.1_1	ENST00000566740.1_1	chr15	30899897	30900396	AC026150.3	-	lncRNA	chr15	30896328	30906764	GOLGA8H	+	protein_coding	499	opposite	2119_ID	chr15	30899898	30900396	499	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	19
10555	ENST00000603472.1_1	ENST00000604030.7_5	chr4	152061142	152062255	AC095055.1	+	lncRNA	chr4	152041432	152246757	SH3D19	-	protein_coding	1113	opposite	3263_ID	chr4	152061143	152062255	1113	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	19
10573	ENST00000603875.1_1	ENST00000303329.9_3	chr15	80872369	80872907	AC108451.2	-	lncRNA	chr15	80696723	80890274	ARNT2	+	protein_coding	538	opposite	3735_ID	chr15	80872370	80872907	538	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	19
10749	ENST00000606838.1_1	ENST00000373204.6_2	chr1	36395320	36395716	AL139286.1	-	lncRNA	chr1	36348809	36396133	AGO1	+	protein_coding	396	opposite	5028_ID	chr1	36395321	36395716	396	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	19	19
10752	ENST00000606841.1_1	ENST00000504690.5_3	chr5	148349902	148350216	AC116312.1	+	lncRNA	chr5	148303201	148442726	SH3TC2	-	nonsense_mediated_decay	314	opposite	3900_ID	chr5	148349903	148350216	314	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	19
10767	ENST00000607019.1_3	ENST00000394660.6_1	chr15	81595555	81601732	AC103858.1	-	lncRNA	chr15	81489219	81606399	IL16	+	protein_coding	6177	opposite	3483_ID	chr15	81595556	81601732	6177	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	16	19
10857	ENST00000607845.1	ENST00000412402.5_1	chr7	114293399	114293510	MIR3666	+	miRNA	chr7	113726381	114330960	FOXP2	+	nonsense_mediated_decay	111	same	8376_ID	chr7	114293400	114293510	111	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	19
11118	ENST00000610840.1_1	ENST00000216962.9_2	chr20	25265550	25266224	AL121772.3	-	lncRNA	chr20	25228720	25278648	PYGB	+	protein_coding	674	opposite	4751_ID	chr20	25265551	25266224	674	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	19
11258	ENST00000614331.1_1	ENST00000216962.9_2	chr20	25231643	25231940	AL121772.2	-	lncRNA	chr20	25228720	25278648	PYGB	+	protein_coding	297	opposite	4750_ID	chr20	25231644	25231940	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
11487	ENST00000619826.1_1	ENST00000425752.6_2	chr12	45650255	45650509	AC009248.2	+	lncRNA	chr12	45609802	45834187	ANO6	+	protein_coding	254	same	930_ID	chr12	45650256	45650509	254	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
11607	ENST00000622257.4_2	ENST00000673810.1_1	chr11	57508721	57510883	SELENOH	+	protein_coding	chr11	57480055	57585903	AP001931.2	+	nonsense_mediated_decay	2301	same	12030_ID	chr11	57508722	57510883	2162	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
11832	ENST00000634965.2_5	ENST00000361413.8_5	chr17	6531938	6543776	AC004706.3	-	protein_coding	chr17	6481466	6544031	KIAA0753	-	protein_coding	11838	same	161_ID	chr17	6531939	6543776	11838	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	19
11839	ENST00000635364.1_1	ENST00000412402.5_1	chr7	114201015	114201572	AC003992.1	+	lncRNA	chr7	113726381	114330960	FOXP2	+	nonsense_mediated_decay	557	same	89_ID	chr7	114201016	114201572	557	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	19
11948	ENST00000641603.1_3	ENST00000651574.1_1	chr2	166841150	167005661	SCN1A	-	protein_coding	chr2	166813910	167209440	SCN1A-AS1	+	lncRNA	164574	opposite	12010_ID	chr2	166841151	167005661	164511	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	19
11997	ENST00000644657.1_1	ENST00000376718.8_4	chr9	79319736	79478223	PCA3	+	lncRNA	chr9	79226291	79521030	PRUNE2	-	protein_coding	171328	opposite	9504_ID	chr9	79319737	79478223	158487	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	19
12063	ENST00000648383.1_1	ENST00000268206.12_4	chr15	82473083	82475041	AC026624.1	+	lncRNA	chr15	82422573	82555075	EFL1	-	protein_coding	1958	opposite	2163_ID	chr15	82473084	82475041	1958	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	19
12144	ENST00000649591.1_6	ENST00000637474.1_1	chr14	101346089	101370059	RTL1	-	protein_coding	chr14	101302605	101413531	AL117190.1	+	lncRNA	23970	opposite	11975_ID	chr14	101346090	101370059	23970	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	3	19
12304	ENST00000652984.1_3	ENST00000649896.1_1	chr11	65072876	65081715	AP000944.7	-	lncRNA	chr11	65029398	65094014	AP000944.5	+	nonsense_mediated_decay	8839	opposite	6060_ID	chr11	65072877	65081715	8839	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	19
12420	ENST00000655902.1_1	ENST00000330125.10_5	chr22	31848866	31860290	AL096701.3	+	lncRNA	chr22	31835352	31885828	EIF4ENIF1	-	protein_coding	11424	opposite	4683_ID	chr22	31848867	31860290	11424	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	19
12550	ENST00000658424.1_3	ENST00000495514.5_3	chr3	112978632	112985671	AC026329.1	-	lncRNA	chr3	112930328	113006306	BOC	+	protein_coding	7039	opposite	2130_ID	chr3	112978633	112985671	7039	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	19
12686	ENST00000661083.1_3	ENST00000641259.1_3	chr16	7351605	7354639	AC007222.2	-	lncRNA	chr16	5289802	7761460	RBFOX1	+	protein_coding	3034	opposite	529_ID	chr16	7351606	7354639	3034	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	19
12769	ENST00000662962.1_1	ENST00000546815.6_5	chr12	108925849	108933514	AC008119.1	+	lncRNA	chr12	108915990	108954949	SART3	-	protein_coding	7665	opposite	703_ID	chr12	108925850	108933514	7665	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	19
12791	ENST00000663297.1_1	ENST00000328459.11_4	chr14	91224942	91226405	AL122020.2	+	lncRNA	chr14	90990907	91282774	TTC7B	-	protein_coding	1463	opposite	4799_ID	chr14	91224943	91226405	1463	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	19
12884	ENST00000665170.1_1	ENST00000641259.1_3	chr16	6430476	6445579	AC006112.1	+	lncRNA	chr16	5289802	7761460	RBFOX1	+	protein_coding	15103	same	417_ID	chr16	6430477	6445579	15103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	19
12980	ENST00000667440.1_3	ENST00000382100.8_3	chr9	2652855	2654371	AL450467.1	-	lncRNA	chr9	2621786	2660056	VLDLR	+	protein_coding	1516	opposite	5662_ID	chr9	2652856	2654371	1516	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	18	19
13136	ENST00000670944.1_1	ENST00000409261.6_6	chr2	134023936	134043017	NCKAP5-AS2	+	lncRNA	chr2	133429360	134326034	NCKAP5	-	protein_coding	20478	opposite	9241_ID	chr2	134023937	134043017	19081	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	19
37761	ENST00000424244.1_1	ENST00000357096.5_3	chr5	131339284	131342715	ACSL6-AS1	+	lncRNA	chr5	131285668	131347607	ACSL6	-	protein_coding	3431	opposite	4337_ID	chr5	131339285	131342715	3431	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
71331	ENST00000531305.1_3	ENST00000622211.4_4	chr11	111687937	111699936	ALG9-IT1	-	lncRNA	chr11	111657009	111750149	AP001781.2	-	protein_coding	11999	same	5932_ID	chr11	111687938	111699936	11999	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	19
92941	ENST00000581972.1	ENST00000263409.8_3	chr5	38557603	38557663	MIR3650	-	miRNA	chr5	38475064	38595506	LIFR	-	protein_coding	60	same	8362_ID	chr5	38557604	38557663	60	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	19
118651	ENST00000636216.1_5	ENST00000409371.8_4	chr4	6066703	6071889	AC092442.1	-	protein_coding	chr4	6027929	6202282	JAKMIP1	-	protein_coding	5186	same	3095_ID	chr4	6066704	6071889	5186	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	19
14061	ENST00000366259.2_3	ENST00000642475.1_1	chr13	100151980	100153306	LINC00449	-	lncRNA	chr13	100151209	100215588	TM9SF2	+	protein_coding	1326	opposite	7552_ID	chr13	100151981	100153306	1326	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	19
35671	ENST00000418803.1_1	ENST00000405510.5_5	chr22	39130734	39134995	AL021707.3	+	lncRNA	chr22	39130729	39151533	SUN2	-	protein_coding	4261	opposite	4451_ID	chr22	39130735	39134995	4261	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	16	19
34811	ENST00000416406.1_1	ENST00000406622.5_5	chr22	39135007	39145046	AL021707.1	+	lncRNA	chr22	39131913	39190148	SUN2	-	protein_coding	10039	opposite	4450_ID	chr22	39135008	39145046	10039	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	19
63	ENST00000234816.7_4	ENST00000367634.6_2	chr1	178818669	178840212	ANGPTL1	-	protein_coding	chr1	178694281	178890976	RALGPS2	+	protein_coding	21543	opposite	5942_ID	chr1	178818670	178840212	21543	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	18
103	ENST00000248598.6_4	ENST00000285871.5_5	chr7	76822685	76829136	FGL2	-	protein_coding	chr7	76751931	76924521	CCDC146	+	protein_coding	6480	opposite	7026_ID	chr7	76822686	76829136	6451	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
206	ENST00000274711.7_4	ENST00000627109.2_1	chr5	138204609	138211024	LRRTM2	-	protein_coding	chr5	138089106	138270722	CTNNA1	+	protein_coding	6448	opposite	7873_ID	chr5	138204610	138211024	6415	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	18
293	ENST00000296238.4_4	ENST00000402825.7_2	chr3	183977000	183979341	CAMK2N2	-	protein_coding	chr3	183967482	184010819	EEF1AKMT4-ECE2	+	protein_coding	2341	opposite	6546_ID	chr3	183977001	183979341	2341	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
345	ENST00000304061.8_3	ENST00000553558.6_4	chr14	73957637	73960098	RIOX1	+	protein_coding	chr14	73945188	74025651	HEATR4	-	protein_coding	2461	opposite	9752_ID	chr14	73957638	73960098	2461	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	18
375	ENST00000308641.6_4	ENST00000304685.8_2	chr1	183615409	183622451	APOBEC4	-	protein_coding	chr1	183605219	183897665	RGL1	+	protein_coding	7042	opposite	6322_ID	chr1	183615410	183622451	7042	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
700	ENST00000357388.8_2	ENST00000483754.1_3	chr3	160117437	160152741	SMC4	+	protein_coding	chr3	159945240	160167617	AC079594.1	-	nonsense_mediated_decay	35681	opposite	12123_ID	chr3	160117438	160152741	35304	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
754	ENST00000362117.1	ENST00000483754.1_3	chr3	160122532	160122613	MIR16-2	+	miRNA	chr3	159945240	160167617	AC079594.1	-	nonsense_mediated_decay	81	opposite	8116_ID	chr3	160122533	160122613	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
759	ENST00000362135.1	ENST00000637474.1_1	chr14	101377475	101377550	MIR370	+	miRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	75	same	8394_ID	chr14	101377476	101377550	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	18
809	ENST00000362281.1	ENST00000637474.1_1	chr14	101340829	101340922	MIR337	+	miRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	93	same	8327_ID	chr14	101340830	101340922	93	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
833	ENST00000362431.1	ENST00000568954.5_7	chr16	71699993	71700100	RNU6-208P	+	snRNA	chr16	71678826	71758604	PHLPP2	-	protein_coding	107	opposite	11074_ID	chr16	71699994	71700100	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	18
977	ENST00000363345.2	ENST00000637474.1_1	chr14	101405892	101405968	SNORD113-6	+	snoRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	76	same	12245_ID	chr14	101405893	101405968	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	18
1007	ENST00000363497.1	ENST00000637474.1_1	chr14	101409787	101409861	SNORD113-8	+	snoRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	74	same	12249_ID	chr14	101409788	101409861	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	18
1022	ENST00000363561.1	ENST00000374360.8_4	chrX	69670728	69670872	RNU4-81P	+	snRNA	chrX	69664684	69725340	DLG3	+	protein_coding	144	same	10708_ID	chrX	69670729	69670872	144	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	18
1039	ENST00000363656.1	ENST00000416691.5_1	chr13	40359551	40359647	RNY4P14	-	misc_RNA	chr13	40229763	40365802	COG6	+	protein_coding	96	opposite	11849_ID	chr13	40359552	40359647	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
1058	ENST00000363762.1	ENST00000637474.1_1	chr14	101407462	101407539	SNORD113-7	+	snoRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	77	same	12246_ID	chr14	101407463	101407539	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	18
1107	ENST00000363970.1	ENST00000380958.8_2	chr13	28806637	28806744	RNU6-82P	+	snRNA	chr13	28712681	28869472	PAN3	+	protein_coding	107	same	11536_ID	chr13	28806638	28806744	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	18
1169	ENST00000364357.1	ENST00000374595.8_3	chr9	111754688	111754849	RNA5-8SP3	-	rRNA	chr9	111704848	111775802	CTNNAL1	-	protein_coding	161	same	10506_ID	chr9	111754689	111754849	161	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
1191	ENST00000364460.1	ENST00000355973.7_3	chr6	29550025	29550109	SNORD32B	+	snoRNA	chr6	29523405	29595815	GABBR1	-	protein_coding	84	opposite	12397_ID	chr6	29550026	29550109	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
1207	ENST00000364561.1	ENST00000533625.5_1	chr14	38297002	38297109	RNU6-1277P	-	snRNA	chr14	38080455	38510647	TTC6	+	nonsense_mediated_decay	107	opposite	10969_ID	chr14	38297003	38297109	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	18
1267	ENST00000364830.2	ENST00000637474.1_1	chr14	101396255	101396328	SNORD113-3	+	snoRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	73	same	12238_ID	chr14	101396256	101396328	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	18
1309	ENST00000365080.1	ENST00000637474.1_1	chr14	101411985	101412057	SNORD113-9	+	snoRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	72	same	12250_ID	chr14	101411986	101412057	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
1341	ENST00000365280.1	ENST00000252015.3_7	chr20	33618119	33618223	RNU6-407P	-	snRNA	chr20	33590206	33680610	TRPC4AP	-	protein_coding	104	same	11217_ID	chr20	33618120	33618223	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	18
1346	ENST00000365321.1	ENST00000637474.1_1	chr14	101391160	101391229	SNORD113-1	+	snoRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	69	same	12234_ID	chr14	101391161	101391229	69	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	18
1370	ENST00000365488.1	ENST00000381295.7_3	chr4	56751760	56751867	RNU6-652P	+	snRNA	chr4	56719813	56771252	EXOC1	+	protein_coding	107	same	11409_ID	chr4	56751761	56751867	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	18
1464	ENST00000370438.2_3	ENST00000651111.1_3	chrX	148593038	148607803	AC244197.2	-	lncRNA	chrX	148558634	148622471	AC244197.3	-	protein_coding	14765	same	4289_ID	chrX	148593039	148607803	14765	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	18
1509	ENST00000373425.8_4	ENST00000259351.10_4	chr9	129849626	129884914	ANGPTL2	-	protein_coding	chr9	129677060	129985445	RALGPS1	+	protein_coding	35288	opposite	5943_ID	chr9	129849627	129884914	35288	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	18
1551	ENST00000376593.2_3	ENST00000676595.1_1	chr2	111855921	111871762	ACOXL-AS1	-	lncRNA	chr2	111490115	111878187	ACOXL	+	protein_coding	18063	opposite	4332_ID	chr2	111855922	111871762	15841	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
1582	ENST00000379491.5_3	ENST00000480294.1_1	chr6	10873455	10882274	GCM2	-	protein_coding	chr6	10748026	10930656	AL024498.2	+	nonsense_mediated_decay	8819	opposite	7110_ID	chr6	10873456	10882274	8819	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
1594	ENST00000380200.3_2	ENST00000359276.9_4	chrX	16668280	16672793	S100G	+	protein_coding	chrX	16606121	16730792	CTPS2	-	protein_coding	4513	opposite	11985_ID	chrX	16668281	16672793	4513	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	18
1813	ENST00000384310.1	ENST00000394573.6_3	chr15	85481646	85481753	RNU6-339P	-	snRNA	chr15	85427892	85489029	SLC28A1	+	protein_coding	107	opposite	11163_ID	chr15	85481647	85481753	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	18
1860	ENST00000384465.1	ENST00000396153.7_5	chr1	51048075	51048183	RNU6-1026P	+	snRNA	chr1	50902699	51425939	FAF1	-	protein_coding	108	opposite	10778_ID	chr1	51048076	51048183	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	18
2005	ENST00000384837.1	ENST00000637474.1_1	chr14	101348219	101348343	MIR433	+	miRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	124	same	8522_ID	chr14	101348220	101348343	124	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
2042	ENST00000384876.1	ENST00000637474.1_1	chr14	101349315	101349412	MIR127	+	miRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	97	same	8026_ID	chr14	101349316	101349412	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
2054	ENST00000384893.1	ENST00000444190.5_2	chr3	35785967	35786051	MIR128-2	+	miRNA	chr3	35682455	35835949	ARPP21	+	protein_coding	84	same	8039_ID	chr3	35785968	35786051	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	18
2136	ENST00000385045.1	ENST00000483754.1_3	chr3	160122375	160122473	MIR15B	+	miRNA	chr3	159945240	160167617	AC079594.1	-	nonsense_mediated_decay	98	opposite	8114_ID	chr3	160122376	160122473	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
2165	ENST00000385104.1	ENST00000261646.10_5	chr17	17717149	17717245	MIR33B	-	miRNA	chr17	17714669	17740325	SREBF1	-	protein_coding	96	same	8331_ID	chr17	17717150	17717245	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	18
2185	ENST00000385195.1	ENST00000376462.5_3	chr10	24564613	24564710	MIR603	+	miRNA	chr10	23983674	24836772	KIAA1217	+	protein_coding	97	same	9004_ID	chr10	24564614	24564710	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
2194	ENST00000385207.1	ENST00000637474.1_1	chr14	101351033	101351125	MIR136	+	miRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	92	same	8091_ID	chr14	101351034	101351125	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
2200	ENST00000385213.1	ENST00000360833.6_2	chr16	67236223	67236298	MIR328	-	miRNA	chr16	67233013	67237932	ELMO3	+	protein_coding	75	opposite	8321_ID	chr16	67236224	67236298	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	18
2228	ENST00000385254.1	ENST00000637474.1_1	chr14	101335396	101335485	MIR493	+	miRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	89	same	8799_ID	chr14	101335397	101335485	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
2235	ENST00000385266.1	ENST00000637474.1_1	chr14	101347343	101347457	MIR431	+	miRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	114	same	8505_ID	chr14	101347344	101347457	114	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
2275	ENST00000388752.8_4	ENST00000467906.5_1	chr6	43021766	43027172	MRPL2	-	protein_coding	chr6	43008514	43042825	KLC4	+	nonsense_mediated_decay	5410	opposite	9161_ID	chr6	43021767	43027172	5406	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	18
2290	ENST00000390179.3	ENST00000433867.5_6	chr19	47212549	47212602	MIR320E	-	miRNA	chr19	47177573	47220384	PRKD2	-	protein_coding	53	same	8316_ID	chr19	47212550	47212602	53	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	18
2316	ENST00000390666.4_3	ENST00000408903.7_4	chr5	112768249	112770686	TSSK1B	-	protein_coding	chr5	112357802	112824150	MCC	-	protein_coding	2437	same	12805_ID	chr5	112768250	112770686	2437	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
2367	ENST00000390895.1	ENST00000642475.1_1	chr13	100188572	100188650	RNY3P6	-	misc_RNA	chr13	100151209	100215588	TM9SF2	+	protein_coding	78	opposite	11842_ID	chr13	100188573	100188650	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	18
2380	ENST00000390945.1	ENST00000486903.5_4	chr20	13953961	13954070	RNU6-278P	-	snRNA	chr20	13830048	13975979	SEL1L2	-	nonsense_mediated_decay	109	same	11122_ID	chr20	13953962	13954070	109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
2395	ENST00000391030.1	ENST00000298767.10_4	chr10	88248202	88248306	RNU6-780P	+	snRNA	chr10	88195012	88281549	WAPL	-	protein_coding	104	opposite	11497_ID	chr10	88248203	88248306	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	18
2410	ENST00000391082.1	ENST00000637474.1_1	chr14	101393678	101393750	SNORD113-2	+	snoRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	72	same	12236_ID	chr14	101393679	101393750	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	18
2414	ENST00000391086.1	ENST00000394573.6_3	chr15	85482847	85482954	RNU6-796P	-	snRNA	chr15	85427892	85489029	SLC28A1	+	protein_coding	107	opposite	11507_ID	chr15	85482848	85482954	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	18
2623	ENST00000402221.4_1	ENST00000406869.5_3	chr7	1878221	1889567	AC104129.1	+	lncRNA	chr7	1855429	2272878	MAD1L1	-	protein_coding	11346	opposite	3512_ID	chr7	1878222	1889567	11346	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
2663	ENST00000408123.1	ENST00000526619.6_1	chr15	28633514	28633597	AC091304.1	+	miRNA	chr15	28623809	28637164	GOLGA8F	+	protein_coding	83	same	2996_ID	chr15	28633515	28633597	83	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	18
2687	ENST00000408193.1	ENST00000426955.6_2	chr3	183959192	183959277	MIR1224	+	miRNA	chr3	183948216	183960117	VWA5B2	+	protein_coding	85	same	7983_ID	chr3	183959193	183959277	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
2765	ENST00000408401.1	ENST00000486903.5_4	chr20	13936409	13936503	AL117333.1	-	miRNA	chr20	13830048	13975979	SEL1L2	-	nonsense_mediated_decay	94	same	4723_ID	chr20	13936410	13936503	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
2980	ENST00000408939.4_3	ENST00000637633.1_1	chr2	178413725	178417524	TTC30B	-	protein_coding	chr2	178284996	178424027	AGPS	+	protein_coding	3799	opposite	12810_ID	chr2	178413726	178417524	3799	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
3035	ENST00000410245.1	ENST00000441236.3_2	chr16	68363289	68363432	RNU4-30P	-	snRNA	chr16	68344921	68392487	PRMT7	+	protein_coding	143	opposite	10674_ID	chr16	68363290	68363432	143	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	18
3086	ENST00000410444.1	ENST00000651574.1_1	chr2	167037161	167037476	RN7SKP152	-	misc_RNA	chr2	166813910	167209440	SCN1A-AS1	+	lncRNA	315	opposite	9791_ID	chr2	167037162	167037476	315	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	18
3208	ENST00000411058.1	ENST00000556564.6_4	chr14	88979841	88980007	RNU4-22P	+	snRNA	chr14	88932121	89021351	PTPN21	-	protein_coding	166	opposite	10666_ID	chr14	88979842	88980007	166	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
3222	ENST00000411138.1	ENST00000396193.5_6	chr7	31833861	31833959	AC006377.1	+	miRNA	chr7	31790792	32338941	PDE1C	-	protein_coding	98	opposite	457_ID	chr7	31833862	31833959	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	18
3225	ENST00000411150.1	ENST00000468200.2_1	chr12	40200896	40200976	AC121336.1	-	miRNA	chr12	40020019	40302102	C12orf40	+	nonsense_mediated_decay	80	opposite	3973_ID	chr12	40200897	40200976	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
3319	ENST00000412311.5_3	ENST00000319653.14_2	chr1	240341138	240342944	AL359918.2	-	lncRNA	chr1	240255182	240638487	FMN2	+	protein_coding	1806	opposite	5504_ID	chr1	240341139	240342944	1806	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	18
3358	ENST00000413353.1_1	ENST00000309507.9_3	chr2	237299716	237301031	IQCA1-AS1	+	lncRNA	chr2	237232789	237416178	IQCA1	-	protein_coding	1315	opposite	7363_ID	chr2	237299717	237301031	1315	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	18
3359	ENST00000413431.1_3	ENST00000648725.1_3	chr10	76762812	76784932	AC018511.2	-	lncRNA	chr10	76584693	76792042	KAT6B	+	protein_coding	22120	opposite	1625_ID	chr10	76762813	76784932	22120	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	18
3367	ENST00000413674.1_3	ENST00000263073.11_4	chr17	2118775	2119309	AC090617.1	-	lncRNA	chr17	1963136	2207079	SMG6	-	protein_coding	534	same	2921_ID	chr17	2118776	2119309	534	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	18
3412	ENST00000414776.1_1	ENST00000263073.11_4	chr17	2135973	2136904	AL450226.1	+	lncRNA	chr17	1963136	2207079	SMG6	-	protein_coding	931	opposite	5650_ID	chr17	2135974	2136904	931	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	18
3460	ENST00000415706.1_3	ENST00000444190.5_2	chr3	35691688	35693453	ARPP21-AS1	-	lncRNA	chr3	35682455	35835949	ARPP21	+	protein_coding	1765	opposite	6346_ID	chr3	35691689	35693453	1765	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
3597	ENST00000419815.1_1	ENST00000376238.5_5	chr9	86893133	86905046	AL356134.1	+	lncRNA	chr9	86890371	86955673	SLC28A3	-	protein_coding	11913	opposite	5372_ID	chr9	86893134	86905046	11913	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	18
3795	ENST00000424664.1_1	ENST00000396153.7_5	chr1	50927140	50936822	FAF1-AS1	+	lncRNA	chr1	50902699	51425939	FAF1	-	protein_coding	9682	opposite	6957_ID	chr1	50927141	50936822	9682	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
3809	ENST00000425057.1_4	ENST00000656302.1_3	chrX	12391285	12393252	FRMPD4-AS1	-	lncRNA	chrX	11840541	12740304	FRMPD4	+	protein_coding	1967	opposite	7083_ID	chrX	12391286	12393252	1967	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
4055	ENST00000432653.1_1	ENST00000306052.12_6	chr1	53733606	53734273	AL355483.3	+	lncRNA	chr1	53708035	53793742	LRP8	-	protein_coding	667	opposite	5341_ID	chr1	53733607	53734273	667	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	18
4067	ENST00000433088.1_3	ENST00000649443.1_2	chr7	30109273	30114731	AC007285.1	-	lncRNA	chr7	30068007	30170085	PLEKHA8	+	nonsense_mediated_decay	5458	opposite	536_ID	chr7	30109274	30114731	5458	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	15	18
4073	ENST00000433167.2_1	ENST00000263073.11_4	chr17	2116990	2117708	AC090617.2	+	lncRNA	chr17	1963136	2207079	SMG6	-	protein_coding	718	opposite	2923_ID	chr17	2116991	2117708	718	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	18
4099	ENST00000433876.2_3	ENST00000656437.1_4	chr1	8865918	8867110	AL357552.2	-	lncRNA	chr1	8421217	8908980	RERE	-	protein_coding	1192	same	5426_ID	chr1	8865919	8867110	1192	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
4180	ENST00000436249.3_1	ENST00000480294.1_1	chr6	10882012	10884582	AL357497.1	+	lncRNA	chr6	10748026	10930656	AL024498.2	+	nonsense_mediated_decay	2570	same	5425_ID	chr6	10882013	10884582	2570	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
4271	ENST00000438735.1_1	ENST00000535325.5_3	chr3	45982424	45989829	CXCR6	+	protein_coding	chr3	45959390	46037316	FYCO1	-	protein_coding	7419	opposite	6747_ID	chr3	45982425	45989829	7405	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
4482	ENST00000444968.1_3	ENST00000540437.5_3	chr1	1252960	1254069	AL139287.1	-	lncRNA	chr1	1246964	1260067	INTS11	-	protein_coding	1109	same	5030_ID	chr1	1252961	1254069	1109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	18
4548	ENST00000446686.1_2	ENST00000306052.12_6	chr1	53770207	53773134	AL355483.2	+	lncRNA	chr1	53708035	53793742	LRP8	-	protein_coding	2927	opposite	5340_ID	chr1	53770208	53773134	2927	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
4657	ENST00000449895.5_2	ENST00000656437.1_4	chr1	8484704	8494898	RERE-AS1	+	lncRNA	chr1	8421217	8908980	RERE	-	protein_coding	10369	opposite	9729_ID	chr1	8484705	8494898	10194	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	18
4736	ENST00000451829.1_3	ENST00000304685.8_2	chr1	183723552	183724072	AL590422.1	-	lncRNA	chr1	183605219	183897665	RGL1	+	protein_coding	520	opposite	5766_ID	chr1	183723553	183724072	520	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
4745	ENST00000452089.5_5	ENST00000310771.8_1	chr7	99949798	99965356	PILRB	+	protein_coding	chr7	99933736	99965454	STAG3L5P-PVRIG2P-PILRB	+	lncRNA	15558	same	9561_ID	chr7	99949799	99965356	15558	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	18
4908	ENST00000456683.2_1	ENST00000603767.1_3	chr2	111206818	111208641	AC112229.2	+	lncRNA	chr2	111160510	111230652	AC112229.3	-	nonsense_mediated_decay	1823	opposite	3817_ID	chr2	111206819	111208641	1823	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	18
5018	ENST00000458870.1	ENST00000382949.7_3	chr15	28768330	28768413	AC138749.1	-	miRNA	chr15	28764756	28778117	GOLGA8G	-	retained_intron	83	same	4191_ID	chr15	28768331	28768413	83	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	18
5077	ENST00000459254.1	ENST00000271715.7_6	chr1	151411475	151411571	RNY4P25	+	misc_RNA	chr1	151375199	151431970	POGZ	-	protein_coding	96	opposite	11857_ID	chr1	151411476	151411571	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
5141	ENST00000459602.1	ENST00000604046.1_1	chr15	23609590	23609673	AC100756.1	+	miRNA	chr15	23599894	23612378	GOLGA8S	+	retained_intron	83	same	3403_ID	chr15	23609591	23609673	83	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	18
5166	ENST00000461817.2	ENST00000450802.3	chr15	23263707	23263986	RN7SL495P	+	misc_RNA	chr15	23255241	23268823	GOLGA8I	+	protein_coding	279	same	10226_ID	chr15	23263708	23263986	279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
5322	ENST00000471731.2_1	ENST00000492597.5_4	chr3	182734042	182735596	MCCC1-AS1	+	lncRNA	chr3	182733005	182833863	MCCC1	-	protein_coding	1554	opposite	7928_ID	chr3	182734043	182735596	1554	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	18
5345	ENST00000473279.2	ENST00000567927.1_1	chr15	30383853	30384132	RN7SL673P	+	misc_RNA	chr15	30375255	30385702	GOLGA8J	+	protein_coding	279	same	10357_ID	chr15	30383854	30384132	279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
5356	ENST00000473668.2	ENST00000433867.5_6	chr19	47192055	47192325	RN7SL364P	-	misc_RNA	chr19	47177573	47220384	PRKD2	-	protein_coding	270	same	10131_ID	chr19	47192056	47192325	270	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	18
5366	ENST00000473920.2	ENST00000566740.1_1	chr15	30904915	30905194	RN7SL628P	+	misc_RNA	chr15	30896328	30906764	GOLGA8H	+	protein_coding	279	same	10319_ID	chr15	30904916	30905194	279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
5427	ENST00000478496.2	ENST00000327271.10_3	chr15	30697513	30697792	RN7SL196P	-	misc_RNA	chr15	30695942	30706365	GOLGA8R	-	protein_coding	279	same	10011_ID	chr15	30697514	30697792	279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
5482	ENST00000482640.5_6	ENST00000486715.6_4	chr3	158363610	158387382	LXN	-	protein_coding	chr3	158362315	158413370	GFM1	+	protein_coding	26827	opposite	7884_ID	chr3	158363611	158387382	23772	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	18
5484	ENST00000482670.2	ENST00000509311.7_8	chr15	32738878	32739157	RN7SL539P	-	misc_RNA	chr15	32734114	32747835	GOLGA8O	-	protein_coding	279	same	10261_ID	chr15	32738879	32739157	279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
5493	ENST00000483161.2	ENST00000295408.9_3	chr2	112687751	112688041	RN7SL297P	+	misc_RNA	chr2	112656183	112787138	MERTK	+	protein_coding	290	same	10087_ID	chr2	112687752	112688041	290	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
5513	ENST00000484900.2	ENST00000327155.10_3	chr18	20584526	20584820	RN7SL745P	+	misc_RNA	chr18	20513290	20606449	RBBP8	+	protein_coding	294	same	10401_ID	chr18	20584527	20584820	294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	18
5536	ENST00000485670.2	ENST00000562783.1_2	chr15	30852854	30853133	RN7SL796P	+	misc_RNA	chr15	30844280	30854704	GOLGA8Q	+	protein_coding	279	same	10438_ID	chr15	30852855	30853133	279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
5559	ENST00000487967.2	ENST00000563027.1_3	chr15	28948668	28948947	RN7SL719P	-	misc_RNA	chr15	28947099	28957469	GOLGA8M	-	protein_coding	279	same	10381_ID	chr15	28948669	28948947	279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
5572	ENST00000489428.2_3	ENST00000273390.9_2	chr3	119462985	119469197	AC069444.1	-	lncRNA	chr3	119421868	119485949	CFAP91	+	protein_coding	6212	opposite	2491_ID	chr3	119462986	119469197	6212	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	18
5596	ENST00000490496.2	ENST00000398576.6_5	chr13	46743593	46743883	RN7SL288P	-	misc_RNA	chr13	46700054	46785483	LCP1	-	protein_coding	290	same	10082_ID	chr13	46743594	46743883	290	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	18
5607	ENST00000491512.2	ENST00000569052.1_2	chr15	30435924	30436203	RN7SL469P	+	misc_RNA	chr15	30427351	30437770	GOLGA8T	+	protein_coding	279	same	10208_ID	chr15	30435925	30436203	279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
5618	ENST00000492212.2	ENST00000512626.2_3	chr15	32686546	32686825	RN7SL185P	-	misc_RNA	chr15	32684982	32695396	GOLGA8K	-	protein_coding	279	same	10001_ID	chr15	32686547	32686825	279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
5640	ENST00000493229.2	ENST00000448387.6_2	chr15	32894329	32894608	RN7SL286P	+	misc_RNA	chr15	32885656	32899511	GOLGA8N	+	protein_coding	279	same	10079_ID	chr15	32894330	32894608	279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
5730	ENST00000500262.1_3	ENST00000319449.9_3	chr5	179022904	179030742	RUFY1-AS1	-	lncRNA	chr5	178977554	179037013	RUFY1	+	protein_coding	7838	opposite	11979_ID	chr5	179022905	179030742	7838	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	18
5923	ENST00000507566.1_3	ENST00000265109.8_4	chr5	34656516	34657355	AC025754.1	-	lncRNA	chr5	34656432	34832717	RAI14	+	protein_coding	839	opposite	2104_ID	chr5	34656517	34657355	839	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	18
6105	ENST00000513127.1_1	ENST00000295974.12_4	chr4	40814795	40828168	AC131953.1	+	lncRNA	chr4	40812043	41216635	APBB2	-	protein_coding	13373	opposite	4095_ID	chr4	40814796	40828168	13373	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	15	18
6329	ENST00000516270.1	ENST00000450056.7_6	chr12	133411959	133412086	RNU6-327P	-	snRNA	chr12	133408941	133464191	CHFR	-	protein_coding	127	same	11155_ID	chr12	133411960	133412086	127	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	18	18
6341	ENST00000516302.1	ENST00000656302.1_3	chrX	12166436	12166520	AC002981.1	-	miRNA	chrX	11840541	12740304	FRMPD4	+	protein_coding	84	opposite	78_ID	chrX	12166437	12166520	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
6587	ENST00000517016.1	ENST00000396153.7_5	chr1	51215967	51216025	RNU6-1253P	+	snRNA	chr1	50902699	51425939	FAF1	-	protein_coding	58	opposite	10950_ID	chr1	51215968	51216025	58	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	18
6631	ENST00000517124.1	ENST00000262965.12_7	chr19	1616490	1616594	RNU6-1223P	-	snRNA	chr19	1609290	1652614	TCF3	-	protein_coding	104	same	10923_ID	chr19	1616491	1616594	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	18
6651	ENST00000517175.1	ENST00000281282.6_2	chr15	57697271	57697373	RNU6-844P	-	snRNA	chr15	57668702	57842915	CGNL1	+	protein_coding	102	opposite	11550_ID	chr15	57697272	57697373	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
6904	ENST00000523318.1_1	ENST00000286355.10_4	chr8	131947654	131961911	AC103726.2	+	lncRNA	chr8	131792546	132053155	ADCY8	-	protein_coding	14257	opposite	3462_ID	chr8	131947655	131961911	14257	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	18
6927	ENST00000523907.1_1	ENST00000642720.2_2	chr8	51293574	51294835	AC090539.1	+	lncRNA	chr8	50823966	51709252	SNTG1	+	protein_coding	1261	same	2907_ID	chr8	51293575	51294835	1261	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
6939	ENST00000524433.1_1	ENST00000306534.8_4	chr11	124761199	124762022	AP003501.2	+	lncRNA	chr11	124753586	124767761	ROBO4	-	protein_coding	823	opposite	6266_ID	chr11	124761200	124762022	823	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	18
6974	ENST00000526362.1_3	ENST00000325319.9_4	chr11	21281606	21284116	AC090857.2	-	lncRNA	chr11	20691096	21597227	NELL1	+	protein_coding	2510	opposite	2942_ID	chr11	21281607	21284116	2510	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	18
7043	ENST00000528480.1_1	ENST00000676320.1_1	chr11	46138128	46138869	AC024475.1	+	lncRNA	chr11	45950869	46143005	PHF21A	-	protein_coding	4197	opposite	2017_ID	chr11	46138129	46138869	741	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
7056	ENST00000528795.1_3	ENST00000325319.9_4	chr11	20691970	20692843	AC090707.1	-	lncRNA	chr11	20691096	21597227	NELL1	+	protein_coding	873	opposite	2930_ID	chr11	20691971	20692843	873	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
7277	ENST00000538837.1_3	ENST00000303372.7_3	chr12	124192148	124192933	AC117503.1	-	lncRNA	chr12	124155659	124192946	TCTN2	+	protein_coding	785	opposite	3937_ID	chr12	124192149	124192933	785	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	18	18
7335	ENST00000542466.2_1	ENST00000257897.7_6	chr12	58120053	58122139	AGAP2-AS1	+	lncRNA	chr12	58117543	58135940	AGAP2	-	protein_coding	2086	opposite	4411_ID	chr12	58120054	58122139	2086	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	14	18
7413	ENST00000546601.1_4	ENST00000266674.10_2	chr12	71976072	71977632	AC078860.3	-	lncRNA	chr12	71833577	71980090	LGR5	+	protein_coding	1560	opposite	2598_ID	chr12	71976073	71977632	1560	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	18
7459	ENST00000548231.1_3	ENST00000303329.9_3	chr15	80726135	80737493	AC016705.1	-	lncRNA	chr15	80696723	80890274	ARNT2	+	protein_coding	11358	opposite	1552_ID	chr15	80726136	80737493	11358	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
7480	ENST00000549070.1_1	ENST00000256062.9_4	chr12	29672663	29682907	AC009320.1	+	lncRNA	chr12	29653772	29937692	TMTC1	-	protein_coding	10244	opposite	950_ID	chr12	29672664	29682907	10244	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	18
7542	ENST00000552415.1_3	ENST00000392842.6_2	chr12	107108701	107126844	AC079385.3	-	lncRNA	chr12	106976781	107156581	RFX4	+	protein_coding	18143	opposite	2659_ID	chr12	107108702	107126844	18143	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	18
7572	ENST00000553394.1_3	ENST00000553558.6_4	chr14	73983936	73987352	AC005225.1	-	lncRNA	chr14	73945188	74025651	HEATR4	-	protein_coding	3416	same	255_ID	chr14	73983937	73987352	3416	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	18
7597	ENST00000554029.1_3	ENST00000533625.5_1	chr14	38472317	38474052	AL359233.1	-	lncRNA	chr14	38080455	38510647	TTC6	+	nonsense_mediated_decay	1735	opposite	5479_ID	chr14	38472318	38474052	1735	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
7607	ENST00000554257.1_3	ENST00000533625.5_1	chr14	38365264	38371329	LINC00517	-	lncRNA	chr14	38080455	38510647	TTC6	+	nonsense_mediated_decay	6313	opposite	7559_ID	chr14	38365265	38371329	6065	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	18
7661	ENST00000555972.2_1	ENST00000553558.6_4	chr14	73989581	73997314	AC005225.3	+	lncRNA	chr14	73945188	74025651	HEATR4	-	protein_coding	7733	opposite	256_ID	chr14	73989582	73997314	7733	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	18
7672	ENST00000556328.1_1	ENST00000556564.6_4	chr14	89017940	89018837	AL162171.1	+	lncRNA	chr14	88932121	89021351	PTPN21	-	protein_coding	897	opposite	5183_ID	chr14	89017941	89018837	897	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
7754	ENST00000558429.1_1	ENST00000322954.11_4	chr15	71041270	71046516	AC009269.2	+	lncRNA	chr15	70946892	71055897	UACA	-	protein_coding	5246	opposite	935_ID	chr15	71041271	71046516	5246	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
7881	ENST00000561571.5_3	ENST00000355327.7_4	chr15	71439988	71481368	THSD4-AS1	-	lncRNA	chr15	71389290	72075722	THSD4	+	protein_coding	41415	opposite	12686_ID	chr15	71439989	71481368	41380	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	18
7931	ENST00000562561.1_1	ENST00000398814.8_3	chr15	74595345	74596684	AC023300.1	+	lncRNA	chr15	74528666	74628482	CCDC33	+	protein_coding	1339	same	1941_ID	chr15	74595346	74596684	1339	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	18
7942	ENST00000562790.1_3	ENST00000261778.2_2	chr16	68961449	68982164	AC009137.1	-	lncRNA	chr16	68877433	69119085	TANGO6	+	protein_coding	20715	opposite	902_ID	chr16	68961450	68982164	20715	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	18
7962	ENST00000563031.1_3	ENST00000281282.6_2	chr15	57769681	57770527	AC025271.3	-	lncRNA	chr15	57668702	57842915	CGNL1	+	protein_coding	846	opposite	2072_ID	chr15	57769682	57770527	846	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	18
7974	ENST00000563203.1_1	ENST00000441236.3_2	chr16	68350703	68352939	AC020978.1	+	lncRNA	chr16	68344921	68392487	PRMT7	+	protein_coding	2236	same	1766_ID	chr16	68350704	68352939	2236	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
8048	ENST00000564739.1_1	ENST00000320640.11_4	chr16	47333357	47351725	AC007533.1	+	lncRNA	chr16	47188301	47494974	ITFG1	-	protein_coding	18368	opposite	590_ID	chr16	47333358	47351725	18368	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	18
8143	ENST00000566738.1_1	ENST00000568954.5_7	chr16	71757082	71758133	AC009097.4	+	lncRNA	chr16	71678826	71758604	PHLPP2	-	protein_coding	1051	opposite	876_ID	chr16	71757083	71758133	1051	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
8170	ENST00000567186.1_1	ENST00000261776.10_4	chr16	70780959	70781829	AC020763.1	+	lncRNA	chr16	70721341	70835061	VAC14	-	protein_coding	870	opposite	1733_ID	chr16	70780960	70781829	870	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	18
8330	ENST00000571815.1_1	ENST00000263073.11_4	chr17	1992974	2004854	AC090617.4	+	lncRNA	chr17	1963136	2207079	SMG6	-	protein_coding	11880	opposite	2925_ID	chr17	1992975	2004854	11880	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	18
8583	ENST00000577915.1	ENST00000356634.7_2	chr1	23370797	23370865	MIR3115	+	miRNA	chr1	23345940	23410182	KDM1A	+	protein_coding	68	same	8234_ID	chr1	23370798	23370865	68	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
8656	ENST00000578375.1	ENST00000376718.8_4	chr9	79281001	79281087	AL359314.1	+	miRNA	chr9	79226291	79521030	PRUNE2	-	protein_coding	86	opposite	5481_ID	chr9	79281002	79281087	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	18
8666	ENST00000578427.1_1	ENST00000317931.12_5	chr18	6256745	6260933	L3MBTL4-AS1	+	lncRNA	chr18	5954715	6414910	L3MBTL4	-	protein_coding	4188	opposite	7503_ID	chr18	6256746	6260933	4188	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	18
8675	ENST00000578512.1	ENST00000427738.8_4	chr16	50776215	50776288	hsa-mir-3181	+	miRNA	chr16	50775996	50835846	CYLD	+	protein_coding	73	same	7293_ID	chr16	50776216	50776288	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
8808	ENST00000579335.1	ENST00000299767.10_2	chr12	104324202	104324333	MIR3652	+	miRNA	chr12	104324187	104341704	HSP90B1	+	protein_coding	131	same	8363_ID	chr12	104324203	104324333	131	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	18
8891	ENST00000579783.1	ENST00000176763.10_4	chr5	171507908	171507980	AC113342.1	-	miRNA	chr5	171469082	171615228	STK10	-	protein_coding	72	same	3847_ID	chr5	171507909	171507980	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	18
8975	ENST00000580297.1	ENST00000263073.11_4	chr17	2103055	2103331	RN7SL624P	+	misc_RNA	chr17	1963136	2207079	SMG6	-	protein_coding	276	opposite	10317_ID	chr17	2103056	2103331	276	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	18
9081	ENST00000580817.1	ENST00000406869.5_3	chr7	1883815	1883889	MIR4655	-	miRNA	chr7	1855429	2272878	MAD1L1	-	protein_coding	74	same	8645_ID	chr7	1883816	1883889	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
9148	ENST00000581152.1	ENST00000369755.4_6	chr10	105734276	105734572	RN7SL524P	-	misc_RNA	chr10	105726897	105788991	SLK	+	protein_coding	296	opposite	10250_ID	chr10	105734277	105734572	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
9230	ENST00000581735.1	ENST00000271643.8_4	chr1	150524404	150524490	MIR4257	+	miRNA	chr1	150521844	150533408	ADAMTSL4	+	protein_coding	86	same	8458_ID	chr1	150524405	150524490	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
9305	ENST00000582088.1	ENST00000638767.1_1	chr11	93533648	93533916	RN7SL195P	+	misc_RNA	chr11	93474829	93545544	AP001273.2	+	protein_coding	268	same	10009_ID	chr11	93533649	93533916	268	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	18
9358	ENST00000582353.1	ENST00000277165.11_2	chr9	96327974	96328082	AL353629.1	-	miRNA	chr9	96213966	96328394	FAM120A	+	protein_coding	108	opposite	5247_ID	chr9	96327975	96328082	108	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	18	18
9442	ENST00000582825.1	ENST00000625837.2_1	chrX	41204834	41205129	RN7SL15P	-	misc_RNA	chrX	41192600	41223725	DDX3X	+	protein_coding	295	opposite	9982_ID	chrX	41204835	41205129	295	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	18
9521	ENST00000583252.1	ENST00000416691.5_1	chr13	40238170	40238272	MIR4305	-	miRNA	chr13	40229763	40365802	COG6	+	protein_coding	102	opposite	8498_ID	chr13	40238171	40238272	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
9590	ENST00000583659.1_3	ENST00000383472.9_3	chr18	6873397	6875023	AP005210.1	-	lncRNA	chr18	6729714	6915715	ARHGAP28	+	protein_coding	1626	opposite	6296_ID	chr18	6873398	6875023	1626	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	18
9622	ENST00000583845.1	ENST00000356634.7_2	chr1	23384350	23384427	MIR4419A	-	miRNA	chr1	23345940	23410182	KDM1A	+	protein_coding	77	opposite	8526_ID	chr1	23384351	23384427	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	18
9706	ENST00000584298.1	ENST00000359276.9_4	chrX	16645134	16645208	MIR548AM	-	miRNA	chrX	16606121	16730792	CTPS2	-	protein_coding	74	same	8878_ID	chrX	16645135	16645208	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
9880	ENST00000585251.1_1	ENST00000675505.1_1	chr18	46642670	46652849	AC016866.2	+	lncRNA	chr18	46562756	46987015	DYM	-	protein_coding	10179	opposite	1567_ID	chr18	46642671	46652849	10179	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	18
10117	ENST00000592536.1_1	ENST00000293328.8_3	chr17	40420604	40421825	AC099811.4	+	lncRNA	chr17	40351194	40428409	STAT5B	-	protein_coding	1221	opposite	3398_ID	chr17	40420605	40421825	1221	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
10283	ENST00000597755.2_3	ENST00000293328.8_3	chr17	40422534	40424701	AC099811.1	-	lncRNA	chr17	40351194	40428409	STAT5B	-	protein_coding	2167	same	3397_ID	chr17	40422535	40424701	2167	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
10381	ENST00000600716.1_1	ENST00000391910.7_7	chr19	47231859	47235957	AC008635.1	+	lncRNA	chr19	47222767	47250138	STRN4	-	protein_coding	4098	opposite	760_ID	chr19	47231860	47235957	4098	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	18
10389	ENST00000600987.1_1	ENST00000248054.10_3	chr19	16954835	16957284	AC008737.1	+	lncRNA	chr19	16940208	16991160	SIN3B	+	protein_coding	2449	same	789_ID	chr19	16954836	16957284	2449	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	18
10404	ENST00000601251.2_1	ENST00000409978.7_4	chr2	39186427	39187483	AC019171.1	-	lncRNA	chr2	39117015	39202595	ARHGEF33	+	protein_coding	1056	opposite	1694_ID	chr2	39186428	39187483	1056	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	18
10416	ENST00000601661.1_1	ENST00000524140.7_5	chr19	16912236	16912525	AC008737.3	+	lncRNA	chr19	16830657	16928764	NWD1	+	protein_coding	289	same	790_ID	chr19	16912237	16912525	289	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	18
10439	ENST00000602327.1_1	ENST00000257861.7_3	chr12	58208276	58208709	AC025165.4	+	lncRNA	chr12	58191664	58210254	AVIL	-	protein_coding	433	opposite	2056_ID	chr12	58208277	58208709	433	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
10645	ENST00000605740.1_1	ENST00000309507.9_3	chr2	237276202	237277745	AC093915.1	+	lncRNA	chr2	237232789	237416178	IQCA1	-	protein_coding	1543	opposite	3261_ID	chr2	237276203	237277745	1543	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	18
10670	ENST00000606123.1_1	ENST00000467906.5_1	chr6	43042068	43042477	AL355385.1	-	lncRNA	chr6	43008514	43042825	KLC4	+	nonsense_mediated_decay	409	opposite	5337_ID	chr6	43042069	43042477	409	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	18	18
10683	ENST00000606207.1	ENST00000637474.1_1	chr14	101350819	101350913	MIR432	+	miRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	94	same	8513_ID	chr14	101350820	101350913	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
10717	ENST00000606533.1_1	ENST00000378567.8_2	chr1	2072522	2076718	AL590822.2	-	lncRNA	chr1	1981849	2116834	PRKCZ	+	protein_coding	4196	opposite	5784_ID	chr1	2072523	2076718	4196	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	18
10755	ENST00000606903.1	ENST00000637474.1_1	chr14	101341369	101341441	MIR665	+	miRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	72	same	9068_ID	chr14	101341370	101341441	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
10786	ENST00000607261.1	ENST00000637474.1_1	chr14	101404523	101404601	SNORD113-5	+	snoRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	78	same	12243_ID	chr14	101404524	101404601	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
10837	ENST00000607624.1_1	ENST00000486715.6_4	chr3	158410908	158411557	AC080013.3	-	lncRNA	chr3	158362315	158413370	GFM1	+	protein_coding	649	opposite	2697_ID	chr3	158410909	158411557	649	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	18	18
10947	ENST00000608793.1_1	ENST00000433211.7_4	chr10	67839000	67878084	AC022017.1	+	lncRNA	chr10	67672280	69455953	CTNNA3	-	protein_coding	39084	opposite	1812_ID	chr10	67839001	67878084	39084	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	18
11124	ENST00000611006.1_3	ENST00000398814.8_3	chr15	74603856	74612029	AC023300.2	-	lncRNA	chr15	74528666	74628482	CCDC33	+	protein_coding	8173	opposite	1942_ID	chr15	74603857	74612029	8173	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	18
11171	ENST00000612423.4_5	ENST00000674236.1_2	chrX	103031438	103047545	PLP1	+	protein_coding	chrX	102961976	103173630	AC234782.2	-	lncRNA	18902	opposite	9584_ID	chrX	103031439	103047545	16107	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	18
11341	ENST00000616263.1_1	ENST00000617146.5_5	chr17	36757301	36758954	AC006449.1	+	lncRNA	chr17	36686265	36762205	SRCIN1	-	protein_coding	1653	opposite	463_ID	chr17	36757302	36758954	1653	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
11382	ENST00000617211.1_4	ENST00000293328.8_3	chr17	40424086	40427589	AC099811.5	-	lncRNA	chr17	40351194	40428409	STAT5B	-	protein_coding	3503	same	3399_ID	chr17	40424087	40427589	3503	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
11578	ENST00000621778.1_1	ENST00000322954.11_4	chr15	71050607	71051195	AC009269.5	-	lncRNA	chr15	70946892	71055897	UACA	-	protein_coding	588	same	937_ID	chr15	71050608	71051195	588	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
11586	ENST00000621879.1_1	ENST00000311191.10_1	chr13	47291557	47291823	AL359880.1	+	lncRNA	chr13	47127302	47327175	LRCH1	+	protein_coding	266	same	5499_ID	chr13	47291558	47291823	266	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	18
11919	ENST00000641075.1_1	ENST00000641206.2_5	chr16	73157194	73171479	AC116667.2	+	lncRNA	chr16	72816783	73925770	ZFHX3	-	protein_coding	14285	opposite	3918_ID	chr16	73157195	73171479	14285	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	7	18
11952	ENST00000641790.1_1	ENST00000641206.2_5	chr16	73420722	73538853	LINC01568	+	lncRNA	chr16	72816783	73925770	ZFHX3	-	protein_coding	118184	opposite	7652_ID	chr16	73420723	73538853	118131	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	18
11955	ENST00000641840.1_2	ENST00000355973.7_3	chr6	29552897	29558277	OR2H2	+	protein_coding	chr6	29523405	29595815	GABBR1	-	protein_coding	5380	opposite	9387_ID	chr6	29552898	29558277	5380	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
11975	ENST00000642127.1_1	ENST00000641206.2_5	chr16	73126588	73133236	HCCAT5	+	lncRNA	chr16	72816783	73925770	ZFHX3	-	protein_coding	6989	opposite	7220_ID	chr16	73126589	73133236	6648	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	8	18
12025	ENST00000647726.1_1	ENST00000442628.7_5	chr8	144920950	144922428	AC234917.2	+	lncRNA	chr8	144915752	144923145	NRBP2	-	protein_coding	1478	opposite	4264_ID	chr8	144920951	144922428	1478	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	18
12030	ENST00000647948.1_3	ENST00000066544.8_5	chr17	45237763	45245089	AC002558.3	-	lncRNA	chr17	45195068	45266661	CDC27	-	protein_coding	7326	same	74_ID	chr17	45237764	45245089	7326	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	18
12385	ENST00000655177.1_3	ENST00000421797.6_1	chr7	130994508	131013013	MKLN1-AS	-	lncRNA	chr7	130794854	131172603	MKLN1	+	protein_coding	18844	opposite	9142_ID	chr7	130994509	131013013	18505	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
12394	ENST00000655341.1_3	ENST00000373206.5_2	chr1	36374580	36376473	AL139286.2	-	lncRNA	chr1	36335408	36386559	AGO1	+	protein_coding	1893	opposite	5029_ID	chr1	36374581	36376473	1893	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	18
12407	ENST00000655603.1_3	ENST00000392842.6_2	chr12	107072360	107077272	AC079385.2	-	lncRNA	chr12	106976781	107156581	RFX4	+	protein_coding	6125	opposite	2656_ID	chr12	107072361	107077272	4912	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	18
12448	ENST00000656476.1_3	ENST00000553525.6_3	chr14	72982114	73011330	AC004828.2	-	lncRNA	chr14	72399145	73033238	RGS6	+	protein_coding	29216	opposite	174_ID	chr14	72982115	73011330	29216	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	18
12518	ENST00000657848.1_3	ENST00000394573.6_3	chr15	85456374	85458936	AC087468.2	-	lncRNA	chr15	85427892	85489029	SLC28A1	+	protein_coding	2562	opposite	2822_ID	chr15	85456375	85458936	2562	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	18
12774	ENST00000663040.1_1	ENST00000645527.1_3	chr11	109817306	109846722	AP001981.2	+	lncRNA	chr11	109735020	110167337	RDX	-	nonsense_mediated_decay	29416	opposite	6173_ID	chr11	109817307	109846722	29416	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
12862	ENST00000664888.1_3	ENST00000376462.5_3	chr10	24699111	24705388	AL356113.1	-	lncRNA	chr10	23983674	24836772	KIAA1217	+	protein_coding	6277	opposite	5369_ID	chr10	24699112	24705388	6277	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	18
12921	ENST00000666287.1_3	ENST00000283206.9_2	chr2	112818660	112821286	AC093675.2	-	lncRNA	chr2	112812845	112876891	TMEM87B	+	protein_coding	2626	opposite	3235_ID	chr2	112818661	112821286	2626	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
12922	ENST00000666336.1_3	ENST00000303329.9_3	chr15	80732634	80735092	AC016705.3	-	lncRNA	chr15	80696723	80890274	ARNT2	+	protein_coding	2458	opposite	1553_ID	chr15	80732635	80735092	2458	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
13073	ENST00000669326.1_3	ENST00000421544.6_2	chr6	101900792	101902121	AP002528.1	-	lncRNA	chr6	101629132	102517958	GRIK2	+	protein_coding	1329	opposite	6194_ID	chr6	101900793	101902121	1329	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	18
45910	ENST00000319560.7_2	ENST00000674236.1_2	chrX	102965836	102968960	TMEM31	+	protein_coding	chrX	102961976	103173630	AC234782.2	-	lncRNA	3124	opposite	12732_ID	chrX	102965837	102968960	3124	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	17	18
68210	ENST00000354489.7_4	ENST00000480294.1_1	chr6	10762955	10838772	MAK	-	protein_coding	chr6	10748026	10930656	AL024498.2	+	nonsense_mediated_decay	75831	opposite	7912_ID	chr6	10762956	10838772	75817	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
112810	ENST00000364089.1	ENST00000394800.6_2	chr5	138614469	138614667	SNORA74A	+	snoRNA	chr5	138609792	138667360	MATR3	+	protein_coding	198	same	12209_ID	chr5	138614470	138614667	198	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	18
17181	ENST00000384022.1	ENST00000257861.7_3	chr12	58199936	58200043	RNU6-1083P	-	snRNA	chr12	58191664	58210254	AVIL	-	protein_coding	107	same	10821_ID	chr12	58199937	58200043	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	18
23061	ENST00000390219.1	ENST00000637474.1_1	chr14	101318726	101318824	MIR770	+	miRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	98	same	9088_ID	chr14	101318727	101318824	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
37301	ENST00000422776.5_3	ENST00000392185.8_3	chr6	158293602	158296242	AL391863.1	-	lncRNA	chr6	158244277	158366109	SNX9	+	protein_coding	2640	opposite	5589_ID	chr6	158293603	158296242	2640	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	18
39881	ENST00000430613.2	ENST00000642610.2_3	chr1	235582829	235590298	RP11-293G6__A.2	-	antisense	chr1	235530741	235615756	TBCE	+	protein_coding	7469	opposite	11888_ID	chr1	235582830	235590298	7469	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	18
55781	ENST00000489428.2_3	ENST00000648112.1_2	chr3	119462985	119469197	AC069444.1	-	lncRNA	chr3	119421922	119526417	AC069444.2	+	protein_coding	6212	opposite	2490_ID	chr3	119462986	119469197	6212	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	18
62961	ENST00000516162.1	ENST00000449891.5_1	chr2	238937611	238937704	RNU6-1333P	-	snRNA	chr2	238875655	239008053	UBE2F-SCLY	+	nonsense_mediated_decay	93	opposite	11016_ID	chr2	238937612	238937704	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	18
84001	ENST00000575039.1_3	ENST00000560629.1_6	chr17	45380839	45400979	THCAT158	-	lncRNA	chr17	45331262	45421658	AC068234.1	+	nonsense_mediated_decay	20154	opposite	12677_ID	chr17	45380840	45400979	20140	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	18
105101	ENST00000602802.1_1	ENST00000257861.7_3	chr12	58197620	58198198	AC025165.5	+	lncRNA	chr12	58191664	58210254	AVIL	-	protein_coding	578	opposite	2057_ID	chr12	58197621	58198198	578	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	18
111921	ENST00000612793.1_1	ENST00000354574.8_3	chr12	110386193	110386834	AC084876.1	+	lncRNA	chr12	110367606	110434194	GIT2	-	protein_coding	641	opposite	2774_ID	chr12	110386194	110386834	641	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	18
117011	ENST00000624419.2_2	ENST00000612520.2_2	chr1	145209152	145282078	NOTCH2NLR	+	protein_coding	chr1	145209144	145318987	NBPF10	+	protein_coding	72926	same	9281_ID	chr1	145209153	145282078	72926	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	18
123191	ENST00000653101.1_3	ENST00000393923.7_2	chr3	111554569	111579577	AC117509.1	-	lncRNA	chr3	111451343	111695114	PHLDB2	+	protein_coding	25008	opposite	3940_ID	chr3	111554570	111579577	25008	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	18
130781	ENST00000669245.1_3	ENST00000409371.8_4	chr4	6179912	6186652	AC113615.2	+	lncRNA	chr4	6027929	6202282	JAKMIP1	-	protein_coding	6740	opposite	3857_ID	chr4	6179913	6186652	6740	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	18
108771	ENST00000607991.1_1	ENST00000406622.5_5	chr22	39139499	39139915	AL021707.7	+	lncRNA	chr22	39131913	39190148	SUN2	-	protein_coding	416	opposite	4455_ID	chr22	39139500	39139915	416	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	18
109821	ENST00000609212.1_1	ENST00000406622.5_5	chr22	39138629	39139120	AL021707.6	+	lncRNA	chr22	39131913	39190148	SUN2	-	protein_coding	491	opposite	4454_ID	chr22	39138630	39139120	491	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	18
109981	ENST00000609428.1_1	ENST00000406622.5_5	chr22	39132614	39132797	AL021707.8	-	lncRNA	chr22	39131913	39190148	SUN2	-	protein_coding	183	same	4459_ID	chr22	39132615	39132797	183	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	18
19	ENST00000216252.4_4	ENST00000676748.1_1	chr22	41855720	41864696	PHF5A	-	protein_coding	chr22	41843833	41925277	ACO2	+	protein_coding	8976	opposite	9551_ID	chr22	41855721	41864696	8976	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
84	ENST00000243298.3_4	ENST00000674236.1_2	chrX	103077256	103087187	RAB9B	-	protein_coding	chrX	102961976	103173630	AC234782.2	-	lncRNA	9931	same	9692_ID	chrX	103077257	103087187	9931	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
166	ENST00000262942.10_3	ENST00000638617.1_1	chr7	98923520	98963885	ARPC1A	+	protein_coding	chr7	98923501	98992276	AC004922.1	+	protein_coding	40365	same	6345_ID	chr7	98923521	98963885	40365	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	17
289	ENST00000295738.11_3	ENST00000498327.5_3	chr2	220026186	220034817	SLC23A3	-	protein_coding	chr2	219940050	220035549	AC068946.1	-	retained_intron	8631	same	12080_ID	chr2	220026187	220034817	8631	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	17
397	ENST00000311148.9_2	ENST00000553558.6_4	chr14	74003846	74010500	ACOT1	+	protein_coding	chr14	73945188	74025651	HEATR4	-	protein_coding	6654	opposite	4327_ID	chr14	74003847	74010500	6654	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
459	ENST00000319682.2_3	ENST00000328041.11_2	chr20	19222945	19265240	SLC24A3-AS1	-	lncRNA	chr20	19193285	19703570	SLC24A3	+	protein_coding	42295	opposite	12081_ID	chr20	19222946	19265240	42295	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	17
470	ENST00000321331.12_3	ENST00000648550.1_3	chr3	42824399	42845982	HIGD1A	-	protein_coding	chr3	42747247	42845985	AC006059.2	-	protein_coding	21583	same	7236_ID	chr3	42824400	42845982	21583	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	17
498	ENST00000324364.4_4	ENST00000505973.1_1	chr2	27848504	27851879	CCDC121	-	protein_coding	chr2	27805912	27858041	AC074091.2	+	lncRNA	3375	opposite	6565_ID	chr2	27848505	27851879	3375	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	17
555	ENST00000331173.6_3	ENST00000401604.8_6	chr10	53455245	53459355	CSTF2T	-	protein_coding	chr10	52750647	54058110	PRKG1	+	protein_coding	4110	opposite	6723_ID	chr10	53455246	53459355	4110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	17
582	ENST00000333854.2_3	ENST00000378567.8_2	chr1	2113232	2115314	PRKCZ-AS1	-	lncRNA	chr1	1981849	2116834	PRKCZ	+	protein_coding	2596	opposite	9638_ID	chr1	2113233	2115314	2082	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	17
651	ENST00000343087.4_3	ENST00000401604.8_6	chr10	52822338	52828313	AL731537.1	-	lncRNA	chr10	52750647	54058110	PRKG1	+	protein_coding	5975	opposite	5893_ID	chr10	52822339	52828313	5975	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
653	ENST00000343318.9_3	ENST00000650585.1_3	chr7	91770956	91808845	LRRD1	-	protein_coding	chr7	91761087	91875238	AC000120.3	-	protein_coding	37889	same	7868_ID	chr7	91770957	91808845	37889	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	17
741	ENST00000361320.5_2	ENST00000433211.7_4	chr10	68685793	68861309	LRRTM3	+	protein_coding	chr10	67672280	69455953	CTNNA3	-	protein_coding	175516	opposite	7874_ID	chr10	68685794	68861309	175516	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	17
844	ENST00000362511.1	ENST00000326291.11_2	chr13	73455245	73455352	RNU6-79P	-	snRNA	chr13	73356270	73590599	PIBF1	+	protein_coding	107	opposite	11510_ID	chr13	73455246	73455352	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	17
853	ENST00000362590.2	ENST00000303714.9_2	chr2	69410008	69410115	RNU6-1216P	+	snRNA	chr2	69240310	69476459	ANTXR1	+	protein_coding	107	same	10919_ID	chr2	69410009	69410115	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	17
907	ENST00000362920.1	ENST00000295974.12_4	chr4	41086623	41086730	RNU6-836P	+	snRNA	chr4	40812043	41216635	APBB2	-	protein_coding	107	opposite	11543_ID	chr4	41086624	41086730	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	17
1001	ENST00000363477.1	ENST00000637782.1_4	chr5	125888993	125889094	RNU6-963P	-	snRNA	chr5	125866891	125930911	ALDH7A1	-	protein_coding	101	same	11639_ID	chr5	125888994	125889094	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	17
1012	ENST00000363509.1	ENST00000288221.11_4	chr3	56106131	56106435	RN7SKP45	+	misc_RNA	chr3	55542338	56502495	ERC2	-	protein_coding	304	opposite	9897_ID	chr3	56106132	56106435	304	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	17
1015	ENST00000363524.1	ENST00000253247.9_2	chr17	65736784	65736915	SNORA38B	+	snoRNA	chr17	65714051	65740647	NOL11	+	protein_coding	131	same	12173_ID	chr17	65736785	65736915	131	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	17
1019	ENST00000363537.1	ENST00000389629.8_1	chr15	41740939	41741042	RNU6-1169P	-	snRNA	chr15	41709301	41775761	RTF1	+	protein_coding	103	opposite	10874_ID	chr15	41740940	41741042	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
1026	ENST00000363585.1	ENST00000261435.11_3	chr4	40079503	40079602	RNU6-1112P	+	snRNA	chr4	40058469	40159872	N4BP2	+	protein_coding	99	same	10839_ID	chr4	40079504	40079602	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
1043	ENST00000363680.1	ENST00000405592.5_1	chr2	42939879	42939987	RNU6-137P	+	snRNA	chr2	42721708	42984087	MTA3	+	protein_coding	108	same	11026_ID	chr2	42939880	42939987	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	17
1167	ENST00000364351.1	ENST00000374012.8_2	chr20	34475580	34475723	RNU4-40P	+	snRNA	chr20	34359936	34538292	PHF20	+	protein_coding	143	same	10681_ID	chr20	34475581	34475723	143	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	17
1187	ENST00000364447.1	ENST00000370331.5_4	chr1	93166375	93166491	RNU4-59P	-	snRNA	chr1	92974252	93257961	EVI5	-	protein_coding	116	same	10697_ID	chr1	93166376	93166491	116	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	17
1198	ENST00000364497.1	ENST00000341776.7_3	chr6	15315150	15315257	RNU6-522P	+	snRNA	chr6	15246299	15522273	JARID2	+	protein_coding	107	same	11306_ID	chr6	15315151	15315257	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
1226	ENST00000364649.1	ENST00000341776.7_3	chr6	15324597	15324703	RNU6-645P	-	snRNA	chr6	15246299	15522273	JARID2	+	protein_coding	106	opposite	11403_ID	chr6	15324598	15324703	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
1231	ENST00000364680.1	ENST00000383366.9_3	chr3	130811664	130811771	RNU6-726P	-	snRNA	chr3	130745720	131069309	NEK11	+	protein_coding	107	opposite	11456_ID	chr3	130811665	130811771	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	17
1330	ENST00000365219.1	ENST00000377810.8_3	chr11	63650058	63650157	RNU6-1306P	-	snRNA	chr11	63606399	63678491	MARK2	+	protein_coding	99	opposite	10996_ID	chr11	63650059	63650157	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
1391	ENST00000365627.1	ENST00000261778.2_2	chr16	69040954	69041058	RNU6-898P	-	snRNA	chr16	68877433	69119085	TANGO6	+	protein_coding	104	opposite	11592_ID	chr16	69040955	69041058	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	17
1422	ENST00000367084.1_3	ENST00000411990.6_1	chr1	207217193	207226325	YOD1	-	protein_coding	chr1	207207760	207252479	PFKFB2	+	nonsense_mediated_decay	9132	opposite	12928_ID	chr1	207217194	207226325	9132	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	17
1438	ENST00000368195.4_4	ENST00000392302.7_3	chr1	156809854	156828909	INSRR	-	protein_coding	chr1	156785447	156851642	NTRK1	+	protein_coding	19055	opposite	7359_ID	chr1	156809855	156828909	19055	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	17
1506	ENST00000373337.3_4	ENST00000487874.1_3	chr1	35447135	35450954	TMEM35B	-	protein_coding	chr1	35447133	35497342	AC114490.2	-	nonsense_mediated_decay	3819	same	12734_ID	chr1	35447136	35450954	3819	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	16	17
1575	ENST00000378695.9_3	ENST00000328705.7_3	chr12	75728449	75764340	GLIPR1L1	+	protein_coding	chr12	75671008	75784702	CAPS2	-	nonsense_mediated_decay	35891	opposite	7132_ID	chr12	75728450	75764340	35891	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	17
1712	ENST00000384016.1	ENST00000265107.9_2	chr5	37700432	37700539	RNU6-484P	-	snRNA	chr5	37379419	37753537	WDR70	+	protein_coding	107	opposite	11274_ID	chr5	37700433	37700539	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	17
1820	ENST00000384325.1	ENST00000374012.8_2	chr20	34516491	34516597	RNU6-937P	-	snRNA	chr20	34359936	34538292	PHF20	+	protein_coding	106	opposite	11622_ID	chr20	34516492	34516597	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	17
1862	ENST00000384469.1	ENST00000295974.12_4	chr4	41115958	41116062	RNU6-1195P	+	snRNA	chr4	40812043	41216635	APBB2	-	protein_coding	104	opposite	10898_ID	chr4	41115959	41116062	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
2083	ENST00000384965.1	ENST00000374586.8_4	chr9	111808508	111808578	MIR32	-	miRNA	chr9	111777414	111882227	TMEM245	-	protein_coding	70	same	8310_ID	chr9	111808509	111808578	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	17
2118	ENST00000385023.1	ENST00000296603.5_4	chr5	36147993	36148090	MIR580	-	miRNA	chr5	36098508	36151989	LMBRD2	-	protein_coding	97	same	8982_ID	chr5	36147994	36148090	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
2154	ENST00000385078.1	ENST00000401604.8_6	chr10	53059332	53059415	MIR605	+	miRNA	chr10	52750647	54058110	PRKG1	+	protein_coding	83	same	9006_ID	chr10	53059333	53059415	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
2176	ENST00000385187.1	ENST00000413852.5_2	chr3	50210758	50210852	MIR566	+	miRNA	chr3	50192523	50226507	SEMA3F	+	protein_coding	94	same	8950_ID	chr3	50210759	50210852	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
2253	ENST00000385290.1	ENST00000416240.6_3	chr7	95848973	95849068	MIR591	-	miRNA	chr7	95749532	95951459	SLC25A13	-	protein_coding	95	same	8994_ID	chr7	95848974	95849068	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	17
2345	ENST00000390784.1	ENST00000383366.9_3	chr3	130830513	130830602	AC121332.1	-	miRNA	chr3	130745720	131069309	NEK11	+	protein_coding	89	opposite	3969_ID	chr3	130830514	130830602	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	17
2388	ENST00000390988.1	ENST00000320640.11_4	chr16	47484257	47484372	RNA5SP424	-	rRNA	chr16	47188301	47494974	ITFG1	-	protein_coding	115	same	10520_ID	chr16	47484258	47484372	115	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	17
2393	ENST00000391025.1	ENST00000383812.9_3	chr3	9960734	9960837	RNU6-882P	-	snRNA	chr3	9958757	9975305	IL17RC	+	protein_coding	103	opposite	11581_ID	chr3	9960735	9960837	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	17
2529	ENST00000398291.4_4	ENST00000435819.5_2	chr7	80087950	80141380	GNAT3	-	protein_coding	chr7	79998890	80303725	CD36	+	protein_coding	53430	opposite	7137_ID	chr7	80087951	80141380	53430	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	17
2577	ENST00000401203.1	ENST00000401604.8_6	chr10	53399502	53399592	AC068062.1	-	miRNA	chr10	52750647	54058110	PRKG1	+	protein_coding	90	opposite	2391_ID	chr10	53399503	53399592	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	17
2640	ENST00000408054.1	ENST00000326291.11_2	chr13	73425225	73425307	AL391384.1	+	miRNA	chr13	73356270	73590599	PIBF1	+	protein_coding	82	same	5576_ID	chr13	73425226	73425307	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	17
2643	ENST00000408060.1	ENST00000416240.6_3	chr7	95936071	95936172	AC084368.1	-	miRNA	chr7	95749532	95951459	SLC25A13	-	protein_coding	101	same	2747_ID	chr7	95936072	95936172	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
2646	ENST00000408070.1	ENST00000488290.5_3	chr10	30653995	30654077	AL161651.1	-	miRNA	chr10	30601938	30663370	MTPAP	-	processed_transcript	82	same	5152_ID	chr10	30653996	30654077	82	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	17
2662	ENST00000408121.1	ENST00000641784.1_2	chr7	97535283	97535431	AC079781.1	+	miRNA	chr7	97480999	97602297	AC079781.5	-	lncRNA	148	opposite	2677_ID	chr7	97535284	97535431	148	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	17
2684	ENST00000408187.1	ENST00000539565.6_3	chr14	50151261	50151383	RNU6ATAC30P	+	snRNA	chr14	50110302	50155140	POLE2	-	protein_coding	122	opposite	11674_ID	chr14	50151262	50151383	122	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
2692	ENST00000408210.1	ENST00000320005.5_3	chr8	87670097	87670180	AC013751.1	-	miRNA	chr8	87586162	87755903	CNGB3	-	protein_coding	83	same	1462_ID	chr8	87670098	87670180	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	17
2715	ENST00000408283.1	ENST00000400546.6_3	chr21	22770067	22770146	AP001137.1	-	miRNA	chr21	22370726	22915650	NCAM2	+	protein_coding	79	opposite	6099_ID	chr21	22770068	22770146	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	17
2790	ENST00000408465.1	ENST00000674236.1_2	chrX	103065313	103065438	Z73964.1	+	miRNA	chrX	102961976	103173630	AC234782.2	-	lncRNA	125	opposite	12936_ID	chrX	103065314	103065438	125	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
2807	ENST00000408505.1	ENST00000281821.7_5	chr2	222384283	222384377	AC079834.2	-	miRNA	chr2	222282746	222437024	EPHA4	-	protein_coding	94	same	2681_ID	chr2	222384284	222384377	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	17
2818	ENST00000408536.1	ENST00000371822.9_1	chrX	117520356	117520434	MIR1277	+	miRNA	chrX	117480035	117583921	WDR44	+	protein_coding	78	same	8036_ID	chrX	117520357	117520434	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
2848	ENST00000408593.1	ENST00000650585.1_3	chr7	91833328	91833412	MIR1285-1	-	miRNA	chr7	91761087	91875238	AC000120.3	-	protein_coding	84	same	8045_ID	chr7	91833329	91833412	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	17
2927	ENST00000408777.1	ENST00000304032.13_3	chr2	236480574	236480647	AC012305.1	+	miRNA	chr2	236402686	237040437	AGAP1	+	protein_coding	73	same	1355_ID	chr2	236480575	236480647	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
2969	ENST00000408872.1	ENST00000641206.2_5	chr16	73018755	73018853	AC132068.1	+	miRNA	chr16	72816783	73925770	ZFHX3	-	protein_coding	98	opposite	4097_ID	chr16	73018756	73018853	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	17
2986	ENST00000409446.8_4	ENST00000421990.7_6	chr17	41120120	41132450	PTGES3L	-	protein_coding	chr17	41102566	41132545	PTGES3L-AARSD1	-	protein_coding	12346	same	9675_ID	chr17	41120121	41132450	12330	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	17
3031	ENST00000410230.1	ENST00000529388.6_3	chr11	13374754	13375070	RN7SKP151	+	misc_RNA	chr11	13299298	13408810	ARNTL	+	protein_coding	316	same	9790_ID	chr11	13374755	13375070	316	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
3141	ENST00000410703.1	ENST00000549518.6_5	chr12	48475101	48475211	RNU6-1203P	+	snRNA	chr12	48436679	48499862	SENP1	-	protein_coding	110	opposite	10907_ID	chr12	48475102	48475211	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	17
3163	ENST00000410811.1	ENST00000265107.9_2	chr5	37620086	37620190	RNU6-1190P	-	snRNA	chr5	37379419	37753537	WDR70	+	protein_coding	104	opposite	10893_ID	chr5	37620087	37620190	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	17
3201	ENST00000411040.1	ENST00000315506.11_4	chr2	202511438	202511543	RNU6-651P	+	snRNA	chr2	202509592	202563417	MPP4	-	protein_coding	105	opposite	11408_ID	chr2	202511439	202511543	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	17
3232	ENST00000411202.1	ENST00000303296.9_4	chr11	33376010	33376091	AL122015.1	+	miRNA	chr11	33278926	33378569	HIPK3	+	protein_coding	81	same	4796_ID	chr11	33376011	33376091	81	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	17	17
3276	ENST00000411561.1_3	ENST00000468435.6_1	chr9	6415144	6449558	AL133480.1	-	lncRNA	chr9	6413150	6507054	UHRF2	+	nonsense_mediated_decay	34414	opposite	4862_ID	chr9	6415145	6449558	34414	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	17
3604	ENST00000419889.1_1	ENST00000401604.8_6	chr10	53062325	53066469	AC069079.1	+	lncRNA	chr10	52750647	54058110	PRKG1	+	protein_coding	4144	same	2466_ID	chr10	53062326	53066469	4144	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
3734	ENST00000422963.1_1	ENST00000433211.7_4	chr10	68812366	68814786	AL139240.1	+	lncRNA	chr10	67672280	69455953	CTNNA3	-	protein_coding	2420	opposite	5020_ID	chr10	68812367	68814786	2420	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	17
3781	ENST00000424450.1_3	ENST00000482278.5_3	chr10	135108690	135109481	AL360181.2	-	lncRNA	chr10	135093145	135125841	TUBGCP2	-	nonsense_mediated_decay	791	same	5526_ID	chr10	135108691	135109481	791	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	17
3810	ENST00000425058.1_3	ENST00000400546.6_3	chr21	22595615	22599150	AP001136.1	-	lncRNA	chr21	22370726	22915650	NCAM2	+	protein_coding	3535	opposite	6098_ID	chr21	22595616	22599150	3535	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
3851	ENST00000426453.1_1	ENST00000449297.6_5	chr6	56708799	56728876	DST-AS1	+	lncRNA	chr6	56505264	56819426	DST	-	protein_coding	20151	opposite	6855_ID	chr6	56708800	56728876	20077	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	17
3921	ENST00000429007.1_3	ENST00000368357.7_3	chr6	126119001	126140004	NCOA7-AS1	-	lncRNA	chr6	126102306	126252257	NCOA7	+	protein_coding	21003	opposite	9243_ID	chr6	126119002	126140004	21003	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	17
4036	ENST00000432130.1_1	ENST00000402281.5_3	chr22	30994295	31002674	AC005006.1	+	lncRNA	chr22	30972614	31003070	PES1	-	protein_coding	8379	opposite	211_ID	chr22	30994296	31002674	8379	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	17
4039	ENST00000432210.1_3	ENST00000647005.1_1	chr1	100927954	100951553	AL589990.1	-	lncRNA	chr1	100810593	100983809	CDC14A	+	protein_coding	23599	opposite	5746_ID	chr1	100927955	100951553	23599	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	17
4090	ENST00000433507.1_1	ENST00000409914.7_4	chr2	130865256	130867314	POTEF-AS1	+	lncRNA	chr2	130831107	130886795	POTEF	-	protein_coding	2058	opposite	9599_ID	chr2	130865257	130867314	2058	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	17
4147	ENST00000435271.1_3	ENST00000401604.8_6	chr10	53004653	53005566	AC022537.1	-	lncRNA	chr10	52750647	54058110	PRKG1	+	protein_coding	20559	opposite	1883_ID	chr10	53004654	53005566	913	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
4201	ENST00000436608.1_3	ENST00000648725.1_3	chr10	76783232	76784009	AC018511.1	-	lncRNA	chr10	76584693	76792042	KAT6B	+	protein_coding	777	opposite	1623_ID	chr10	76783233	76784009	777	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	17
4213	ENST00000437007.1_1	ENST00000264162.7_4	chr2	136577760	136580657	LCT-AS1	+	lncRNA	chr2	136545419	136594754	LCT	-	protein_coding	2897	opposite	7517_ID	chr2	136577761	136580657	2897	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	17
4325	ENST00000440101.1_3	ENST00000304032.13_3	chr2	236682498	236692031	AC064874.1	-	lncRNA	chr2	236402686	237040437	AGAP1	+	protein_coding	9533	opposite	2366_ID	chr2	236682499	236692031	9533	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	17
4338	ENST00000440498.1_1	ENST00000304032.13_3	chr2	236414394	236416210	AGAP1-IT1	+	lncRNA	chr2	236402686	237040437	AGAP1	+	protein_coding	1816	same	4410_ID	chr2	236414395	236416210	1816	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
4364	ENST00000441178.2_4	ENST00000676449.1_1	chr10	105005643	105007773	RPEL1	+	protein_coding	chr10	104847920	105037362	NT5C2	-	protein_coding	2130	opposite	11950_ID	chr10	105005644	105007773	2130	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
4387	ENST00000441978.1_3	ENST00000341776.7_3	chr6	15248045	15248865	JARID2-AS1	-	lncRNA	chr6	15246299	15522273	JARID2	+	protein_coding	820	opposite	7386_ID	chr6	15248046	15248865	820	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
4431	ENST00000443012.1_3	ENST00000634606.1_1	chr1	60220418	60254854	AL035416.1	-	lncRNA	chr1	59762478	60276319	FGGY	+	nonsense_mediated_decay	34436	opposite	4601_ID	chr1	60220419	60254854	34436	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	13	17
4549	ENST00000446709.1_3	ENST00000357430.8_2	chr2	223782104	223784081	ACSL3-AS1	-	lncRNA	chr2	223725753	223809357	ACSL3	+	protein_coding	1977	opposite	4335_ID	chr2	223782105	223784081	1977	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	17
4551	ENST00000446768.1_3	ENST00000392185.8_3	chr6	158306145	158313818	SNX9-AS1	-	lncRNA	chr6	158244277	158366109	SNX9	+	protein_coding	7673	opposite	12482_ID	chr6	158306146	158313818	7673	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	17
4605	ENST00000448389.1_1	ENST00000376281.8_5	chr9	86587147	86590692	AL354733.3	+	lncRNA	chr9	86582997	86595519	HNRNPK	-	protein_coding	3545	opposite	5278_ID	chr9	86587148	86590692	3545	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	17
4753	ENST00000452363.1_1	ENST00000369110.8_4	chr6	105726890	105729630	AL133406.2	+	lncRNA	chr6	105725144	105901937	PREP	-	protein_coding	2740	opposite	4854_ID	chr6	105726891	105729630	2740	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	16	17
4775	ENST00000452962.1_3	ENST00000295542.6_5	chr1	155017666	155018594	DCST1-AS1	-	lncRNA	chr1	155006299	155023406	DCST1	+	protein_coding	928	opposite	6773_ID	chr1	155017667	155018594	928	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	17
4777	ENST00000453068.1_1	ENST00000650585.1_3	chr7	91763917	91810039	CYP51A1-AS1	+	lncRNA	chr7	91761087	91875238	AC000120.3	-	protein_coding	46122	opposite	6758_ID	chr7	91763918	91810039	46122	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	17
4869	ENST00000455599.1_3	ENST00000319653.14_2	chr1	240563970	240564423	AL590490.1	-	lncRNA	chr1	240255182	240638487	FMN2	+	protein_coding	453	opposite	5773_ID	chr1	240563971	240564423	453	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	17
4887	ENST00000456099.1_3	ENST00000451997.6_2	chr22	38037838	38054384	PDXP-DT	-	lncRNA	chr22	38035699	38062939	Z83844.2	+	protein_coding	16546	opposite	9531_ID	chr22	38037839	38054384	16546	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	17
4900	ENST00000456389.1_1	ENST00000371026.8_4	chr1	67292624	67294241	AL592161.1	+	lncRNA	chr1	67278567	67390539	DNAI4	-	protein_coding	1617	opposite	5805_ID	chr1	67292625	67294241	1617	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	17
5011	ENST00000458845.1	ENST00000304032.13_3	chr2	236945893	236945955	RNU7-127P	+	snRNA	chr2	236402686	237040437	AGAP1	+	protein_coding	62	same	11714_ID	chr2	236945894	236945955	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	17
5036	ENST00000459021.1	ENST00000253861.5_2	chr7	132947394	132947485	AC083875.1	-	miRNA	chr7	132937833	133750514	EXOC4	+	protein_coding	91	opposite	2720_ID	chr7	132947395	132947485	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
5232	ENST00000465782.2	ENST00000526619.6_1	chr15	28632350	28632629	RN7SL238P	+	misc_RNA	chr15	28623809	28637164	GOLGA8F	+	protein_coding	279	same	10043_ID	chr15	28632351	28632629	279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	17
5265	ENST00000468140.2	ENST00000564079.6_4	chr15	43683632	43683925	RN7SL487P	-	misc_RNA	chr15	43663298	43701969	TUBGCP4	+	protein_coding	293	opposite	10217_ID	chr15	43683633	43683925	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	17
5295	ENST00000470244.2	ENST00000265371.8_5	chr10	33577233	33577529	RN7SL398P	-	misc_RNA	chr10	33466419	33625190	NRP1	-	protein_coding	296	same	10156_ID	chr10	33577234	33577529	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	17
5330	ENST00000472243.2_1	ENST00000288221.11_4	chr3	55644630	55647132	AC025572.1	+	lncRNA	chr3	55542338	56502495	ERC2	-	protein_coding	2502	opposite	2095_ID	chr3	55644631	55647132	2502	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	17
5359	ENST00000473793.2	ENST00000367921.8_3	chr1	162747519	162747802	RN7SL861P	+	misc_RNA	chr1	162602253	162757195	DDR2	+	protein_coding	283	same	10488_ID	chr1	162747520	162747802	283	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	17
5367	ENST00000474070.5_3	ENST00000644824.1_2	chr7	29186212	29519972	CHN2	+	nonsense_mediated_decay	chr7	29161955	29554283	AC004593.2	+	protein_coding	367760	same	6644_ID	chr7	29186213	29519972	333760	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	4	17
5415	ENST00000477951.2	ENST00000421285.3_1	chr15	72956895	72957171	RN7SL853P	+	misc_RNA	chr15	72947078	72958735	GOLGA6B	+	protein_coding	276	same	10482_ID	chr15	72956896	72957171	276	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	17
5440	ENST00000479090.2	ENST00000290438.3_4	chr15	74364763	74365039	RN7SL429P	-	misc_RNA	chr15	74362197	74374891	GOLGA6A	-	protein_coding	276	same	10176_ID	chr15	74364764	74365039	276	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	17
5543	ENST00000486185.2	ENST00000300576.5_1	chr15	75560748	75561024	RN7SL489P	+	misc_RNA	chr15	75550939	75562540	GOLGA6C	+	protein_coding	276	same	10220_ID	chr15	75560749	75561024	276	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	17
5565	ENST00000488659.2	ENST00000434739.3_2	chr15	75585024	75585300	RN7SL327P	+	misc_RNA	chr15	75575175	75586816	GOLGA6D	+	protein_coding	276	same	10107_ID	chr15	75585025	75585300	276	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	17
5575	ENST00000489494.2	ENST00000382949.7_3	chr15	28769298	28769577	RN7SL829P	-	misc_RNA	chr15	28764756	28778117	GOLGA8G	-	retained_intron	279	same	10464_ID	chr15	28769299	28769577	279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	17
5601	ENST00000491146.2	ENST00000604046.1_1	chr15	23608427	23608706	RN7SL536P	+	misc_RNA	chr15	23599894	23612378	GOLGA8S	+	retained_intron	279	same	10258_ID	chr15	23608428	23608706	279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	17
5628	ENST00000492743.2	ENST00000366917.6_4	chr1	220745084	220745377	RN7SL464P	-	misc_RNA	chr1	220701477	220837803	MARK1	+	protein_coding	293	opposite	10205_ID	chr1	220745085	220745377	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
5649	ENST00000494134.2	ENST00000370399.6_6	chr1	92295332	92295631	RN7SL653P	-	misc_RNA	chr1	92147982	92371892	TGFBR3	-	protein_coding	299	same	10339_ID	chr1	92295333	92295631	299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	17
5717	ENST00000498989.2_3	ENST00000472726.3_2	chr14	104148698	104150352	AL049840.2	-	lncRNA	chr14	104029298	104152261	AL139300.1	+	protein_coding	1654	opposite	4644_ID	chr14	104148699	104150352	1654	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	17
5785	ENST00000503357.1_3	ENST00000458420.7_2	chr3	140171369	140179193	AC010181.1	-	lncRNA	chr3	139654026	140296239	CLSTN2	+	protein_coding	10917	opposite	1029_ID	chr3	140171370	140179193	7824	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	17
5853	ENST00000505522.6_3	ENST00000509990.5_3	chr5	138609819	138620588	SNHG4	+	lncRNA	chr5	138609440	138665093	MATR3	+	protein_coding	10798	same	12150_ID	chr5	138609820	138620588	10769	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	17
5862	ENST00000505776.1_1	ENST00000523243.5_3	chr8	135610313	135612932	ZFAT-AS1	+	lncRNA	chr8	135490034	135725292	ZFAT	-	nonsense_mediated_decay	2619	opposite	13012_ID	chr8	135610314	135612932	2619	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	17
5884	ENST00000506476.5_3	ENST00000383366.9_3	chr3	130772160	130791183	AC116424.1	-	lncRNA	chr3	130745720	131069309	NEK11	+	protein_coding	19023	opposite	3908_ID	chr3	130772161	130791183	19023	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	17
6103	ENST00000513082.2_3	ENST00000543086.7_2	chr12	1489225	1500668	AC004672.1	-	lncRNA	chr12	1100373	1605099	ERC1	+	protein_coding	11443	opposite	150_ID	chr12	1489226	1500668	11443	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	17
6237	ENST00000516001.1	ENST00000673384.1_3	chr10	28072774	28072982	RN7SKP132	-	misc_RNA	chr10	28064114	28272367	ARMC4	-	nonsense_mediated_decay	208	same	9782_ID	chr10	28072775	28072982	208	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	17
6363	ENST00000516365.1	ENST00000420415.5_4	chr3	195799689	195799751	RNU7-18P	+	snRNA	chr3	195776154	195808965	TFRC	-	protein_coding	62	opposite	11755_ID	chr3	195799690	195799751	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	17
6479	ENST00000516709.1	ENST00000263918.9_4	chr2	37186504	37186605	RNU6-846P	+	snRNA	chr2	37064840	37193679	STRN	-	protein_coding	101	opposite	11551_ID	chr2	37186505	37186605	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
6527	ENST00000516849.1	ENST00000392185.8_3	chr6	158355199	158355289	RNU6-786P	+	snRNA	chr6	158244277	158366109	SNX9	+	protein_coding	90	same	11498_ID	chr6	158355200	158355289	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	17
6558	ENST00000516947.1	ENST00000263918.9_4	chr2	37094540	37094638	RNU6-577P	-	snRNA	chr2	37064840	37193679	STRN	-	protein_coding	98	same	11349_ID	chr2	37094541	37094638	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	17
6707	ENST00000517289.1	ENST00000313164.10_2	chr5	40911168	40911230	RNU7-161P	-	snRNA	chr5	40909598	40984745	C7	+	protein_coding	62	opposite	11733_ID	chr5	40911169	40911230	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
6823	ENST00000520785.1_3	ENST00000286355.10_4	chr8	131904315	131905031	AC103726.1	-	lncRNA	chr8	131792546	132053155	ADCY8	-	protein_coding	716	same	3461_ID	chr8	131904316	131905031	716	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	17
6907	ENST00000523495.1_1	ENST00000276297.9_4	chr8	13196082	13200263	AC019270.1	+	lncRNA	chr8	12940869	13372360	DLC1	-	protein_coding	4181	opposite	1701_ID	chr8	13196083	13200263	4181	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	17
6950	ENST00000525023.1_3	ENST00000528718.6_4	chr8	145538252	145538801	AC233992.1	-	lncRNA	chr8	145538246	145550515	DGAT1	-	protein_coding	549	same	4259_ID	chr8	145538253	145538801	549	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	17	17
7238	ENST00000536364.5_2	ENST00000440513.7_3	chr14	105714826	105717421	BTBD6	+	protein_coding	chr14	105676703	105781926	BRF1	-	protein_coding	2604	opposite	6438_ID	chr14	105714827	105717421	2595	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	17
7247	ENST00000537032.1_3	ENST00000261674.9_3	chr12	132241510	132242592	AC117500.2	-	lncRNA	chr12	132195634	132284283	SFSWAP	+	protein_coding	1082	opposite	3935_ID	chr12	132241511	132242592	1082	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	17
7252	ENST00000537181.1_1	ENST00000543086.7_2	chr12	1494998	1496153	AC004672.2	+	lncRNA	chr12	1100373	1605099	ERC1	+	protein_coding	1155	same	151_ID	chr12	1494999	1496153	1155	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	17
7258	ENST00000537727.1_1	ENST00000294053.9_6	chr11	72065559	72074599	AP002892.1	+	lncRNA	chr11	71996538	72145575	CLPB	-	protein_coding	9040	opposite	6216_ID	chr11	72065560	72074599	9040	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	17
7400	ENST00000546065.1_1	ENST00000294053.9_6	chr11	72013182	72014009	AP000593.3	+	lncRNA	chr11	71996538	72145575	CLPB	-	protein_coding	827	opposite	6004_ID	chr11	72013183	72014009	827	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	17
7458	ENST00000548204.1_1	ENST00000525144.7_5	chr11	126413841	126480843	KIRREL3-AS1	+	lncRNA	chr11	126293252	126870666	KIRREL3	-	protein_coding	67002	opposite	7448_ID	chr11	126413842	126480843	67002	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	17
7465	ENST00000548473.1_3	ENST00000280758.10_5	chr12	108003810	108011498	AC007540.1	-	lncRNA	chr12	107712210	108053419	BTBD11	+	protein_coding	7688	opposite	592_ID	chr12	108003811	108011498	7688	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	17
7516	ENST00000550908.1_1	ENST00000444623.6_5	chr12	53553369	53554784	AC073573.1	+	lncRNA	chr12	53551446	53574709	CSAD	-	protein_coding	1415	opposite	2533_ID	chr12	53553370	53554784	1415	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	17
7518	ENST00000550941.1_1	ENST00000331968.11_6	chr14	30122014	30127122	AL356756.1	+	lncRNA	chr14	30045684	30397053	PRKD1	-	protein_coding	52594	opposite	5401_ID	chr14	30122015	30127122	5108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	17
7794	ENST00000559495.1_3	ENST00000260364.9_1	chr15	69329888	69335905	AC027088.3	-	lncRNA	chr15	69222863	69355083	NOX5	+	protein_coding	6017	opposite	2189_ID	chr15	69329889	69335905	6017	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	17
7798	ENST00000559544.1_1	ENST00000310803.10_5	chr15	38816270	38826856	AC116158.2	+	lncRNA	chr15	38780303	38857015	RASGRP1	-	protein_coding	10586	opposite	3898_ID	chr15	38816271	38826856	10586	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	17
7829	ENST00000560231.1_1	ENST00000310803.10_5	chr15	38795053	38797182	AC116158.1	+	lncRNA	chr15	38780303	38857015	RASGRP1	-	protein_coding	2129	opposite	3897_ID	chr15	38795054	38797182	2129	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	17
7895	ENST00000561802.1_1	ENST00000641206.2_5	chr16	73266660	73267869	AC140912.1	+	lncRNA	chr16	72816783	73925770	ZFHX3	-	protein_coding	1916	opposite	4220_ID	chr16	73266661	73267869	1209	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	17
8005	ENST00000563757.1_1	ENST00000320640.11_4	chr16	47230221	47236340	AC007494.2	+	lncRNA	chr16	47188301	47494974	ITFG1	-	protein_coding	6119	opposite	580_ID	chr16	47230222	47236340	6119	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	17
8011	ENST00000563916.1_3	ENST00000611625.4_3	chr16	68848232	68857429	AC099314.1	-	lncRNA	chr16	68771194	68869444	CDH1	+	protein_coding	9197	opposite	3354_ID	chr16	68848233	68857429	9197	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	17
8034	ENST00000564479.5_1	ENST00000413473.6_4	chr1	51795325	51800996	TTC39A-AS1	+	lncRNA	chr1	51752929	51810788	TTC39A	-	protein_coding	5671	opposite	12811_ID	chr1	51795326	51800996	5671	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
8061	ENST00000565061.3_3	ENST00000641206.2_5	chr16	73846458	73849953	AC087565.1	+	lncRNA	chr16	72816783	73925770	ZFHX3	-	protein_coding	3495	opposite	2833_ID	chr16	73846459	73849953	3495	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
8069	ENST00000565178.1	ENST00000535621.6_2	chr16	15111962	15114345	RP11-680G24.5	-	antisense	chr16	15068868	15233196	PDXDC1	+	protein_coding	2383	opposite	11929_ID	chr16	15111963	15114345	2383	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	17
8112	ENST00000565993.1_3	ENST00000319194.9_1	chr15	66607251	66624041	AC055855.1	-	lncRNA	chr15	66585554	66626236	DIS3L	+	protein_coding	16790	opposite	2340_ID	chr15	66607252	66624041	16790	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	17
8214	ENST00000568179.1_1	ENST00000261778.2_2	chr16	68967722	68971628	AC009137.2	+	lncRNA	chr16	68877433	69119085	TANGO6	+	protein_coding	3906	same	903_ID	chr16	68967723	68971628	3906	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	17
8416	ENST00000576302.1_1	ENST00000381298.7_4	chr5	55231970	55237555	AC008914.1	+	lncRNA	chr5	55230922	55290791	IL6ST	-	protein_coding	5585	opposite	831_ID	chr5	55231971	55237555	5585	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	17	17
8488	ENST00000577443.1	ENST00000303714.9_2	chr2	69330813	69330887	MIR3126	+	miRNA	chr2	69240310	69476459	ANTXR1	+	protein_coding	74	same	8249_ID	chr2	69330814	69330887	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	17
8522	ENST00000577641.1_1	ENST00000675505.1_1	chr18	46732281	46735151	AC044840.1	+	lncRNA	chr18	46562756	46987015	DYM	-	protein_coding	2870	opposite	2304_ID	chr18	46732282	46735151	2870	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	17
8579	ENST00000577887.1	ENST00000407426.8_2	chr2	29150848	29150926	SNORD53_SNORD92	+	snoRNA	chr2	29117532	29171085	WDR43	+	protein_coding	78	same	12420_ID	chr2	29150849	29150926	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	17
8594	ENST00000577959.1	ENST00000641784.1_2	chr7	97593716	97593793	MIR5692C2	-	miRNA	chr7	97480999	97602297	AC079781.5	-	lncRNA	77	same	8967_ID	chr7	97593717	97593793	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
8620	ENST00000578163.1	ENST00000371429.4_4	chr1	54294464	54294534	AL049745.1	+	miRNA	chr1	54231150	54303969	NDC1	-	protein_coding	70	opposite	4630_ID	chr1	54294465	54294534	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	17
8670	ENST00000578460.1	ENST00000263754.5_2	chr3	20179056	20179133	MIR3135A	+	miRNA	chr3	20081937	20195896	KAT2B	+	protein_coding	77	same	8259_ID	chr3	20179057	20179133	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	17
8889	ENST00000579778.1	ENST00000383366.9_3	chr3	130907154	130907242	AC083908.1	-	miRNA	chr3	130745720	131069309	NEK11	+	protein_coding	88	opposite	2725_ID	chr3	130907155	130907242	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	17
8925	ENST00000579950.1	ENST00000543086.7_2	chr12	1119500	1119792	RN7SL852P	+	misc_RNA	chr12	1100373	1605099	ERC1	+	protein_coding	292	same	10481_ID	chr12	1119501	1119792	292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
8929	ENST00000579969.1	ENST00000407426.8_2	chr2	29149932	29150010	SNORD53	+	snoRNA	chr2	29117532	29171085	WDR43	+	protein_coding	78	same	12419_ID	chr2	29149933	29150010	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	17
9017	ENST00000580523.1	ENST00000641784.1_2	chr7	97592969	97593038	MIR5692A1	+	miRNA	chr7	97480999	97602297	AC079781.5	-	lncRNA	69	opposite	8965_ID	chr7	97592970	97593038	69	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
9206	ENST00000581563.1	ENST00000675505.1_1	chr18	46576056	46576138	MIR4744	-	miRNA	chr18	46562756	46987015	DYM	-	protein_coding	82	same	8731_ID	chr18	46576057	46576138	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	17
9298	ENST00000582042.1	ENST00000358658.8_6	chr11	64817248	64817511	RN7SL114P	-	misc_RNA	chr11	64812289	64826025	NAALADL1	-	protein_coding	263	same	9949_ID	chr11	64817249	64817511	263	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	17
9315	ENST00000582157.1	ENST00000288221.11_4	chr3	55886519	55886622	MIR3938	-	miRNA	chr3	55542338	56502495	ERC2	-	protein_coding	103	same	8434_ID	chr3	55886520	55886622	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	17
9324	ENST00000582191.1	ENST00000356221.8_4	chr13	115009979	115010036	MIR548AR	+	miRNA	chr13	115000371	115038198	CDC16	+	protein_coding	57	same	8882_ID	chr13	115009980	115010036	57	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	17
9349	ENST00000582307.1_1	ENST00000257197.7_4	chr18	28711418	28712457	AC012417.1	+	lncRNA	chr18	28709198	28742819	DSC1	-	protein_coding	1039	opposite	1382_ID	chr18	28711419	28712457	1039	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	17
9390	ENST00000582573.1	ENST00000371822.9_1	chrX	117512906	117513007	AL391803.1	+	miRNA	chrX	117480035	117583921	WDR44	+	protein_coding	101	same	5584_ID	chrX	117512907	117513007	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
9404	ENST00000582641.1	ENST00000409978.7_4	chr2	39164020	39164299	RN7SL96P	-	misc_RNA	chr2	39117015	39202595	ARHGEF33	+	protein_coding	279	opposite	10503_ID	chr2	39164021	39164299	279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	17
9445	ENST00000582831.1	ENST00000304032.13_3	chr2	236980938	236981196	RN7SL204P	+	misc_RNA	chr2	236402686	237040437	AGAP1	+	protein_coding	258	same	10019_ID	chr2	236980939	236981196	258	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	17
9473	ENST00000583001.1	ENST00000435138.5_3	chr3	8737862	8737942	AC034187.5	+	miRNA	chr3	8661286	8786722	SSUH2	-	nonsense_mediated_decay	80	opposite	2255_ID	chr3	8737863	8737942	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	17
9543	ENST00000583417.1	ENST00000366565.5_4	chr1	241295571	241295646	MIR3123	+	miRNA	chr1	240938814	241520530	RGS7	-	protein_coding	75	opposite	8247_ID	chr1	241295572	241295646	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
9569	ENST00000583533.1	ENST00000435138.5_3	chr3	8741696	8741784	AC034187.3	+	miRNA	chr3	8661286	8786722	SSUH2	-	nonsense_mediated_decay	88	opposite	2253_ID	chr3	8741697	8741784	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	17
9572	ENST00000583579.1_3	ENST00000675505.1_1	chr18	46958113	46973790	AC100778.1	-	lncRNA	chr18	46562756	46987015	DYM	-	protein_coding	15677	same	3407_ID	chr18	46958114	46973790	15677	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
9585	ENST00000583628.1	ENST00000393127.6_5	chr11	105804679	105804760	AP000673.1	+	miRNA	chr11	105480799	105852819	GRIA4	+	protein_coding	81	same	6007_ID	chr11	105804680	105804760	81	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	17
9681	ENST00000584153.1	ENST00000366541.8_2	chr1	243509477	243509557	MIR4677	+	miRNA	chr1	243419342	243663393	SDCCAG8	+	protein_coding	80	same	8666_ID	chr1	243509478	243509557	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	17
9695	ENST00000584245.1	ENST00000234296.7_4	chr2	201792266	201792534	RN7SL694P	+	misc_RNA	chr2	201773699	201828383	ORC2	-	protein_coding	268	opposite	10370_ID	chr2	201792267	201792534	268	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	17
9748	ENST00000584532.1	ENST00000559471.6_5	chr15	49334539	49334840	RN7SL577P	-	misc_RNA	chr15	49280834	49338643	SECISBP2L	-	protein_coding	301	same	10280_ID	chr15	49334540	49334840	301	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
9758	ENST00000584564.1	ENST00000622860.4_1	chr19	50391431	50391487	MIR4750	+	miRNA	chr19	50380681	50392006	TBC1D17	+	protein_coding	56	same	8738_ID	chr19	50391432	50391487	56	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	17
9815	ENST00000584921.1	ENST00000435138.5_3	chr3	8736999	8737076	AC034187.4	+	miRNA	chr3	8661286	8786722	SSUH2	-	nonsense_mediated_decay	77	opposite	2254_ID	chr3	8737000	8737076	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	17
9845	ENST00000585078.1	ENST00000407426.8_2	chr2	29136529	29136614	SNORD92	+	snoRNA	chr2	29117532	29171085	WDR43	+	protein_coding	85	same	12463_ID	chr2	29136530	29136614	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	17
9885	ENST00000585271.1	ENST00000406979.6_1	chr2	214622790	214622883	MIR4438	+	miRNA	chr2	214149112	215275225	SPAG16	+	nonsense_mediated_decay	93	same	8541_ID	chr2	214622791	214622883	93	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	17
9925	ENST00000586101.1_1	ENST00000366773.8_4	chr6	170170508	170172138	AL354892.3	+	lncRNA	chr6	170151717	170181696	ERMARD	+	protein_coding	1630	same	5294_ID	chr6	170170509	170172138	1630	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	17
9944	ENST00000586675.1_1	ENST00000335312.8_5	chr19	3672579	3674293	AC004637.1	+	lncRNA	chr19	3630180	3700466	PIP5K1C	-	protein_coding	1714	opposite	147_ID	chr19	3672580	3674293	1714	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
9955	ENST00000587011.1_3	ENST00000649217.2_4	chr18	56419410	56421130	AC104365.3	-	lncRNA	chr18	56338696	56421709	MALT1	+	protein_coding	1720	opposite	3527_ID	chr18	56419411	56421130	1720	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	17	17
10015	ENST00000588835.1_3	ENST00000649217.2_4	chr18	56339844	56419962	AC104365.1	-	lncRNA	chr18	56338696	56421709	MALT1	+	protein_coding	80118	opposite	3526_ID	chr18	56339845	56419962	80118	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	17
10112	ENST00000592389.1_1	ENST00000531735.5_3	chr17	43474297	43474843	AC003070.1	+	lncRNA	chr17	43471274	43509715	ARHGAP27	-	retained_intron	546	opposite	80_ID	chr17	43474298	43474843	546	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	17
10237	ENST00000596552.1_1	ENST00000599111.5_4	chr19	48564684	48568202	PLA2G4C-AS1	+	lncRNA	chr19	48551099	48614074	PLA2G4C	-	protein_coding	3575	opposite	9570_ID	chr19	48564685	48568202	3518	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	17
10320	ENST00000598710.5_3	ENST00000360409.7_3	chr2	206621192	206628677	AC007362.1	-	lncRNA	chr2	206547223	206662857	NRP2	+	protein_coding	7538	opposite	552_ID	chr2	206621193	206628677	7485	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	17
10392	ENST00000601086.1	ENST00000310454.10_1	chr2	157352596	157352655	AC011308.1	-	protein_coding	chr2	157291952	157442915	GPD2	+	protein_coding	59	opposite	1187_ID	chr2	157352597	157352655	59	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	3	17
10610	ENST00000604855.3_2	ENST00000641206.2_5	chr16	73094143	73096215	AC116667.1	+	lncRNA	chr16	72816783	73925770	ZFHX3	-	protein_coding	2072	opposite	3917_ID	chr16	73094144	73096215	2072	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	17
10734	ENST00000606707.1_1	ENST00000641206.2_5	chr16	73048217	73048375	AC002044.1	-	lncRNA	chr16	72816783	73925770	ZFHX3	-	protein_coding	158	same	27_ID	chr16	73048218	73048375	158	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	17
10793	ENST00000607286.5_1	ENST00000264938.8_8	chr5	473350	480582	SLC9A3-AS1	+	lncRNA	chr5	470570	524564	SLC9A3	-	protein_coding	7649	opposite	12107_ID	chr5	473351	480582	7232	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	17
11033	ENST00000609765.1_1	ENST00000280527.7_2	chr2	36740397	36740875	AC007378.1	-	lncRNA	chr2	36582920	36778278	CRIM1	+	protein_coding	478	opposite	556_ID	chr2	36740398	36740875	478	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	17
11041	ENST00000609846.1_4	ENST00000328041.11_2	chr20	19673935	19678220	AL121830.1	-	lncRNA	chr20	19193285	19703570	SLC24A3	+	protein_coding	4368	opposite	4759_ID	chr20	19673936	19678220	4285	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	17
11060	ENST00000609998.1_1	ENST00000457861.1_1	chr7	919426	926184	AC073957.3	-	lncRNA	chr7	891586	936072	SUN1	+	nonsense_mediated_decay	6758	opposite	2559_ID	chr7	919427	926184	6758	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	17
11149	ENST00000611634.1_3	ENST00000355327.7_4	chr15	71839618	71842171	AC108861.1	-	lncRNA	chr15	71389290	72075722	THSD4	+	protein_coding	74346	opposite	3748_ID	chr15	71839619	71842171	2553	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	17
11159	ENST00000611964.1_1	ENST00000398022.7_2	chr20	30703973	30704432	AL049539.1	+	lncRNA	chr20	30697516	30755059	TM9SF4	+	protein_coding	2581	same	4619_ID	chr20	30703974	30704432	459	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
11310	ENST00000615679.1_1	ENST00000266674.10_2	chr12	71842184	71842630	AC090116.1	+	lncRNA	chr12	71833577	71980090	LGR5	+	protein_coding	446	same	2870_ID	chr12	71842185	71842630	446	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
11384	ENST00000617300.1_1	ENST00000328705.7_3	chr12	75727577	75728266	AC121761.2	-	lncRNA	chr12	75671008	75784702	CAPS2	-	nonsense_mediated_decay	689	same	3980_ID	chr12	75727578	75728266	689	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	17
11400	ENST00000617759.1_1	ENST00000535621.6_2	chr16	15109684	15110247	AC138932.4	-	lncRNA	chr16	15068868	15233196	PDXDC1	+	protein_coding	563	opposite	4198_ID	chr16	15109685	15110247	563	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	17
11408	ENST00000617939.1_1	ENST00000368648.8_5	chr10	131635768	131636058	AL354950.2	+	lncRNA	chr10	131633546	131771317	EBF3	-	protein_coding	290	opposite	5300_ID	chr10	131635769	131636058	290	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	17	17
11498	ENST00000620106.1_1	ENST00000414834.6_1	chr12	32889863	32890594	AC084824.4	-	lncRNA	chr12	32832133	32898584	DNM1L	+	protein_coding	731	opposite	2765_ID	chr12	32889864	32890594	731	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	17
11520	ENST00000620503.1_1	ENST00000346432.3_1	chrY	6786722	6788832	AC011297.1	+	lncRNA	chrY	6778726	6959724	TBL1Y	+	protein_coding	2110	same	1186_ID	chrY	6786723	6788832	2110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
11601	ENST00000622137.1_1	ENST00000246957.10_5	chr16	3736998	3737381	AC006111.3	+	lncRNA	chr16	3708037	3767525	TRAP1	-	protein_coding	383	opposite	416_ID	chr16	3736999	3737381	383	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	17
11675	ENST00000624072.1_1	ENST00000660610.1_3	chr22	38526222	38546619	AL022322.2	+	lncRNA	chr22	38507760	38610785	PLA2G6	-	protein_coding	20397	opposite	4476_ID	chr22	38526223	38546619	20397	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	17
11777	ENST00000629461.1_1	ENST00000288221.11_4	chr3	55691233	55693410	ERC2-IT1	-	lncRNA	chr3	55542338	56502495	ERC2	-	protein_coding	2177	same	6917_ID	chr3	55691234	55693410	2177	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	17
11803	ENST00000631268.1_2	ENST00000572293.7_5	chr17	4577124	4600081	AC091153.2	+	lncRNA	chr17	4573068	4607432	PELP1	-	protein_coding	23002	opposite	2986_ID	chr17	4577125	4600081	22957	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	17
11881	ENST00000637695.1_1	ENST00000641206.2_5	chr16	73827977	73843632	AC087565.2	+	lncRNA	chr16	72816783	73925770	ZFHX3	-	protein_coding	15677	opposite	2834_ID	chr16	73827978	73843632	15655	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
12017	ENST00000647576.1_1	ENST00000295878.8_5	chr3	113717628	113735108	AC092896.1	+	lncRNA	chr3	113682983	113775373	CCDC191	-	protein_coding	17480	opposite	3165_ID	chr3	113717629	113735108	17480	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	17
12033	ENST00000648023.1_3	ENST00000355327.7_4	chr15	71402582	71407833	CT62	-	lncRNA	chr15	71389290	72075722	THSD4	+	protein_coding	5251	opposite	6728_ID	chr15	71402583	71407833	5251	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
12073	ENST00000648513.1_1	ENST00000355327.7_4	chr15	71624458	71644799	AC064799.2	+	lncRNA	chr15	71389290	72075722	THSD4	+	protein_coding	20341	same	2358_ID	chr15	71624459	71644799	20341	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	17
12130	ENST00000649358.1_3	ENST00000266546.11_3	chr12	7299077	7300413	AC018653.4	-	lncRNA	chr12	7282966	7311541	CLSTN3	+	protein_coding	1336	opposite	1645_ID	chr12	7299078	7300413	1336	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	17
12168	ENST00000650204.1_3	ENST00000641784.1_2	chr7	97595688	97599716	AC004967.2	-	lncRNA	chr7	97480999	97602297	AC079781.5	-	lncRNA	4028	same	206_ID	chr7	97595689	97599716	4028	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
12339	ENST00000653993.1_3	ENST00000368648.8_5	chr10	131655901	131665648	AL354950.3	+	lncRNA	chr10	131633546	131771317	EBF3	-	protein_coding	9747	opposite	5301_ID	chr10	131655902	131665648	9747	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	17
12376	ENST00000655061.1_3	ENST00000404895.7_5	chr8	35529712	35565252	AC105230.1	-	lncRNA	chr8	35092992	35654058	UNC5D	+	protein_coding	35540	opposite	3606_ID	chr8	35529713	35565252	35540	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	17
12431	ENST00000656013.1_3	ENST00000556710.6_7	chr1	160231530	160233118	AL139011.1	+	lncRNA	chr1	160187253	160254920	AL139011.2	-	nonsense_mediated_decay	1588	opposite	4996_ID	chr1	160231531	160233118	1588	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	17
12458	ENST00000656724.1_3	ENST00000217246.8_3	chr20	15872999	15966521	AL079338.1	-	lncRNA	chr20	13976014	16033842	MACROD2	+	protein_coding	93522	opposite	4674_ID	chr20	15873000	15966521	93522	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	17
12459	ENST00000656732.1_3	ENST00000383472.9_3	chr18	6784612	6796502	AP005210.2	-	lncRNA	chr18	6729714	6915715	ARHGAP28	+	protein_coding	11890	opposite	6297_ID	chr18	6784613	6796502	11890	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
12483	ENST00000657161.1_3	ENST00000216237.10_2	chr22	41605104	41624504	L3MBTL2-AS1	-	lncRNA	chr22	41601315	41627275	L3MBTL2	+	protein_coding	20909	opposite	7502_ID	chr22	41605105	41624504	19400	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	17
12558	ENST00000658533.1_1	ENST00000641206.2_5	chr16	73577831	73603208	AC092114.1	+	lncRNA	chr16	72816783	73925770	ZFHX3	-	protein_coding	25383	opposite	3049_ID	chr16	73577832	73603208	25377	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
12559	ENST00000658548.1_3	ENST00000419755.3_1	chr11	66281776	66287191	AP002748.6	-	lncRNA	chr11	66276549	66301084	AP002748.5	+	protein_coding	5415	opposite	6197_ID	chr11	66281777	66287191	5415	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	17
12701	ENST00000661385.1_1	ENST00000324109.9_4	chr10	101686915	101718807	DNMBP-AS1	+	lncRNA	chr10	101635333	101769704	DNMBP	-	protein_coding	32041	opposite	6831_ID	chr10	101686916	101718807	31892	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	17
12715	ENST00000661802.1_1	ENST00000310803.10_5	chr15	38785508	38792186	AC116158.3	+	lncRNA	chr15	38780303	38857015	RASGRP1	-	protein_coding	6678	opposite	3899_ID	chr15	38785509	38792186	6678	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	17
12753	ENST00000662638.1_1	ENST00000276297.9_4	chr8	13004897	13064634	AC106845.1	+	lncRNA	chr8	12940869	13372360	DLC1	-	protein_coding	59737	opposite	3659_ID	chr8	13004898	13064634	59737	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	17
12865	ENST00000664941.1_3	ENST00000303714.9_2	chr2	69257173	69260769	AC114802.1	-	lncRNA	chr2	69240310	69476459	ANTXR1	+	protein_coding	3596	opposite	3875_ID	chr2	69257174	69260769	3596	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
12979	ENST00000667426.1_1	ENST00000675505.1_1	chr18	46973833	46978197	AC100778.4	+	lncRNA	chr18	46562756	46987015	DYM	-	protein_coding	4364	opposite	3411_ID	chr18	46973834	46978197	4364	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
13054	ENST00000669057.1_3	ENST00000392901.10_6	chr10	118764972	118765927	AC023283.1	+	lncRNA	chr10	118659822	118886097	SHTN1	-	protein_coding	955	opposite	1940_ID	chr10	118764973	118765927	955	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
13078	ENST00000669561.1_3	ENST00000358461.6_4	chr4	7800253	7809778	AC112254.1	+	lncRNA	chr4	7760441	7941653	AFAP1	-	protein_coding	9525	opposite	3821_ID	chr4	7800254	7809778	9525	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	17
13187	ENST00000673761.1_2	ENST00000467906.5_1	chr6	43018803	43025923	AL355385.2	-	nonsense_mediated_decay	chr6	43008514	43042825	KLC4	+	nonsense_mediated_decay	7120	opposite	5338_ID	chr6	43018804	43025923	7120	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
13211	ENST00000675818.1_1	ENST00000325954.9_5	chr12	120972499	120972760	AC063943.2	+	protein_coding	chr12	120972158	121015391	RNF10	+	protein_coding	261	same	2351_ID	chr12	120972500	120972760	261	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	17
58110	ENST00000333765.4	ENST00000399914.5_5	chr21	30968359	31003067	GRIK1-AS2	+	protein_coding	chr21	30909253	31312340	GRIK1	-	protein_coding	34708	opposite	7180_ID	chr21	30968360	31003067	34708	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	17
43371	ENST00000440376.1_3	ENST00000265299.6_2	chr7	30836306	30843026	AC004691.1	-	lncRNA	chr7	30811032	30932002	MINDY4	+	protein_coding	6720	opposite	156_ID	chr7	30836307	30843026	6720	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	17
50071	ENST00000458818.1	ENST00000560629.1_6	chr17	45336723	45336786	RNU7-186P	-	snRNA	chr17	45331262	45421658	AC068234.1	+	nonsense_mediated_decay	63	opposite	11753_ID	chr17	45336724	45336786	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
62571	ENST00000516059.1	ENST00000641206.2_5	chr16	72855831	72855891	RNU7-71P	-	snRNA	chr16	72816783	73925770	ZFHX3	-	protein_coding	60	same	11802_ID	chr16	72855832	72855891	60	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	17
67901	ENST00000519375.1_3	ENST00000422843.8_2	chr5	156626252	156651390	AC010609.1	-	lncRNA	chr5	156607850	156682195	ITK	+	protein_coding	36057	opposite	1113_ID	chr5	156626253	156651390	25138	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	17
109191	ENST00000608335.1_1	ENST00000640275.1_2	chr10	38426264	38433327	AL117339.3	+	lncRNA	chr10	38383295	38649026	AL117339.4	+	nonsense_mediated_decay	7063	same	4727_ID	chr10	38426265	38433327	7063	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	17
114781	ENST00000619646.1_1	ENST00000560629.1_6	chr17	45356891	45357413	AC068234.2	-	lncRNA	chr17	45331262	45421658	AC068234.1	+	nonsense_mediated_decay	522	opposite	2398_ID	chr17	45356892	45357413	522	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
115401	ENST00000620814.1_1	ENST00000641206.2_5	chr16	72839896	72843771	AC004943.1	+	lncRNA	chr16	72816783	73925770	ZFHX3	-	protein_coding	22180	opposite	199_ID	chr16	72839897	72843771	3875	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	17
117851	ENST00000629416.2_4	ENST00000636680.2_3	chr3	29567741	29684283	RBMS3-AS2	-	lncRNA	chr3	28617665	30045525	RBMS3	+	protein_coding	116559	opposite	9718_ID	chr3	29567742	29684283	116542	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	17
124231	ENST00000655701.1_4	ENST00000636680.2_3	chr3	29096060	29321506	RBMS3-AS3	-	lncRNA	chr3	28617665	30045525	RBMS3	+	protein_coding	236157	opposite	9719_ID	chr3	29096061	29321506	225446	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	17
132141	ENST00000675181.1_1	ENST00000550078.2_4	chr1	203771221	203771320	AC114402.2	+	protein_coding	chr1	203764841	203824127	ZBED6	+	protein_coding	99	same	3861_ID	chr1	203771222	203771320	99	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	1	17
108	ENST00000249861.9_4	ENST00000544974.6_2	chr15	71173680	71184772	THAP10	-	protein_coding	chr15	71145577	71345996	LRRC49	+	protein_coding	11092	opposite	12673_ID	chr15	71173681	71184772	11092	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
493	ENST00000323380.7_4	ENST00000612955.5_3	chr13	30050651	30064242	MTUS2-AS1	-	lncRNA	chr13	29394484	30080084	MTUS2	+	protein_coding	13591	opposite	9183_ID	chr13	30050652	30064242	13591	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	16
639	ENST00000341420.5_4	ENST00000217246.8_3	chr20	14303630	14318258	FLRT3	-	protein_coding	chr20	13976014	16033842	MACROD2	+	protein_coding	14630	opposite	7045_ID	chr20	14303631	14318258	14628	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
742	ENST00000361350.5_1	ENST00000610401.4_3	chr1	54702112	54704736	SSBP3-AS1	+	lncRNA	chr1	54691105	54872068	SSBP3	-	protein_coding	2624	opposite	12549_ID	chr1	54702113	54704736	2624	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	16
838	ENST00000362456.1	ENST00000650821.1_3	chr4	89147880	89147981	RNU6-1298P	+	snRNA	chr4	89011301	89152780	ABCG2	-	protein_coding	101	opposite	10990_ID	chr4	89147881	89147981	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
856	ENST00000362627.1	ENST00000375938.8_4	chr20	30489056	30489229	RNU1-94P	+	snRNA	chr20	30458504	30532764	TTLL9	+	protein_coding	173	same	10612_ID	chr20	30489057	30489229	173	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	16
866	ENST00000362700.1	ENST00000217246.8_3	chr20	14332965	14333071	RNU6-228P	+	snRNA	chr20	13976014	16033842	MACROD2	+	protein_coding	106	same	11085_ID	chr20	14332966	14333071	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
869	ENST00000362707.1	ENST00000634618.1_1	chr3	20310456	20310562	RNU6-822P	-	snRNA	chr3	20227846	20920327	SGO1-AS1	+	lncRNA	106	opposite	11530_ID	chr3	20310457	20310562	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	16
911	ENST00000362933.1	ENST00000217246.8_3	chr20	15002198	15002305	RNU6-1159P	-	snRNA	chr20	13976014	16033842	MACROD2	+	protein_coding	107	opposite	10866_ID	chr20	15002199	15002305	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
981	ENST00000363354.1	ENST00000449297.6_5	chr6	56810527	56810635	RNU6-626P	+	snRNA	chr6	56505264	56819426	DST	-	protein_coding	108	opposite	11390_ID	chr6	56810528	56810635	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
1160	ENST00000364310.1	ENST00000217246.8_3	chr20	15003497	15003604	RNU6-115P	+	snRNA	chr20	13976014	16033842	MACROD2	+	protein_coding	107	same	10867_ID	chr20	15003498	15003604	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
1209	ENST00000364565.1	ENST00000261211.8_4	chr12	96697152	96697291	RNU4-24P	-	snRNA	chr12	96672038	96794217	CDK17	-	protein_coding	139	same	10668_ID	chr12	96697153	96697291	139	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
1235	ENST00000364700.1	ENST00000302541.11_2	chr3	40011615	40011757	RNU4-56P	+	snRNA	chr3	39851099	40301812	MYRIP	+	protein_coding	142	same	10696_ID	chr3	40011616	40011757	142	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
1269	ENST00000364837.1	ENST00000650821.1_3	chr4	89122854	89122962	RNU6-818P	+	snRNA	chr4	89011301	89152780	ABCG2	-	protein_coding	108	opposite	11527_ID	chr4	89122855	89122962	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
1319	ENST00000365147.1	ENST00000502484.6_5	chr5	59599873	59599978	RNU6-806P	-	snRNA	chr5	58270483	59783903	PDE4D	-	protein_coding	105	same	11514_ID	chr5	59599874	59599978	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
1400	ENST00000365731.2	ENST00000502484.6_5	chr5	58999431	58999529	MIR582	-	miRNA	chr5	58270483	59783903	PDE4D	-	protein_coding	98	same	8984_ID	chr5	58999432	58999529	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
1426	ENST00000367434.5_4	ENST00000367435.5_3	chr1	193147859	193155743	B3GALT2	-	protein_coding	chr1	193091160	193223945	CDC73	+	protein_coding	7884	opposite	6387_ID	chr1	193147860	193155743	7884	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	16
1453	ENST00000369768.1_2	ENST00000659024.1_1	chr20	62737172	62738524	NPBWR2	-	protein_coding	chr20	62733746	62859455	MYT1	+	protein_coding	1352	opposite	9286_ID	chr20	62737173	62738524	1352	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
1478	ENST00000371304.2_4	ENST00000371316.3_2	chr1	55074854	55089229	FAM151A	-	protein_coding	chr1	55013900	55104865	ACOT11	+	protein_coding	14376	opposite	6962_ID	chr1	55074855	55089229	14375	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	16
1585	ENST00000379864.6_4	ENST00000511166.1_3	chr13	36796144	36871961	CCDC169	-	protein_coding	chr13	36742930	36871979	CCDC169-SOHLH2	-	protein_coding	75833	same	6569_ID	chr13	36796145	36871961	75817	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	16
1646	ENST00000383863.1	ENST00000268130.12_3	chr15	90257462	90257569	RNU6-132P	+	snRNA	chr15	90234041	90286869	WDR93	+	protein_coding	107	same	11011_ID	chr15	90257463	90257569	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
1698	ENST00000383976.1	ENST00000264433.11_3	chr4	159715741	159715848	RNU6-128P	-	snRNA	chr4	159690177	159829202	FNIP2	+	protein_coding	107	opposite	10984_ID	chr4	159715742	159715848	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
1714	ENST00000384019.1	ENST00000262719.10_2	chr18	60398458	60398565	RNU6-142P	-	snRNA	chr18	60382773	60647666	PHLPP1	+	protein_coding	107	opposite	11029_ID	chr18	60398459	60398565	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
1734	ENST00000384080.1	ENST00000634618.1_1	chr3	20549135	20549248	RNU6-815P	-	snRNA	chr3	20227846	20920327	SGO1-AS1	+	lncRNA	113	opposite	11523_ID	chr3	20549136	20549248	113	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	16
1781	ENST00000384211.1	ENST00000353442.10_4	chr7	156664771	156664912	RNU4-31P	+	snRNA	chr7	156470484	156685877	LMBR1	-	protein_coding	141	opposite	10675_ID	chr7	156664772	156664912	141	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
2004	ENST00000384832.1	ENST00000375315.7_2	chr9	97847489	97847586	MIR23B	+	miRNA	chr9	97488885	97849441	AOPEP	+	protein_coding	97	same	8202_ID	chr9	97847490	97847586	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
2037	ENST00000384871.1	ENST00000376281.8_5	chr9	86584662	86584772	MIR7-1	-	miRNA	chr9	86582997	86595519	HNRNPK	-	protein_coding	110	same	9073_ID	chr9	86584663	86584772	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
2049	ENST00000384885.2	ENST00000375315.7_2	chr9	97848295	97848376	MIR3074	-	miRNA	chr9	97488885	97849441	AOPEP	+	protein_coding	81	opposite	8225_ID	chr9	97848296	97848376	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
2150	ENST00000385072.1	ENST00000361737.9_4	chr4	8007027	8007108	MIR95	-	miRNA	chr4	7967038	8160538	ABLIM2	-	protein_coding	81	same	9122_ID	chr4	8007028	8007108	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	16
2167	ENST00000385129.1	ENST00000375315.7_2	chr9	97847726	97847823	MIR27B	+	miRNA	chr9	97488885	97849441	AOPEP	+	protein_coding	97	same	8211_ID	chr9	97847727	97847823	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
2174	ENST00000385139.1	ENST00000263181.7_4	chr11	28078361	28078457	MIR610	+	miRNA	chr11	28042165	28129703	KIF18A	-	protein_coding	96	opposite	9011_ID	chr11	28078362	28078457	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	16
2196	ENST00000385208.1	ENST00000413366.8_2	chr17	64783189	64783286	MIR634	+	miRNA	chr17	64298730	64806861	PRKCA	+	protein_coding	97	same	9038_ID	chr17	64783190	64783286	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	16
2332	ENST00000390728.2	ENST00000615550.5_2	chr6	57254929	57255010	MIR548U	+	miRNA	chr6	57182427	57513376	PRIM2	+	protein_coding	81	same	8917_ID	chr6	57254930	57255010	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	16
2514	ENST00000397184.2_1	ENST00000400485.6_3	chr21	37732927	37734338	AP000692.1	+	lncRNA	chr21	37692494	37748930	MORC3	+	protein_coding	1411	same	6011_ID	chr21	37732928	37734338	1411	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
2573	ENST00000401185.1	ENST00000335350.10_4	chr10	72975556	72975628	AL359832.1	+	miRNA	chr10	72972326	73062621	UNC5B	+	protein_coding	72	same	5497_ID	chr10	72975557	72975628	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
2576	ENST00000401198.2	ENST00000328041.11_2	chr20	19570740	19570831	AL139429.1	-	miRNA	chr20	19193285	19703570	SLC24A3	+	protein_coding	91	opposite	5051_ID	chr20	19570741	19570831	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	16
2584	ENST00000401248.1	ENST00000647005.1_1	chr1	100844237	100844331	AC104457.1	-	miRNA	chr1	100810593	100983809	CDC14A	+	protein_coding	94	opposite	3537_ID	chr1	100844238	100844331	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
2614	ENST00000401365.1	ENST00000458420.7_2	chr3	140208893	140208986	AC048346.1	-	miRNA	chr3	139654026	140296239	CLSTN2	+	protein_coding	93	opposite	2311_ID	chr3	140208894	140208986	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	16
2617	ENST00000401373.1	ENST00000646273.1_3	chr12	24365354	24365429	MIR920	+	miRNA	chr12	23686720	24715383	SOX5	-	protein_coding	75	opposite	9101_ID	chr12	24365355	24365429	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
2745	ENST00000408346.1	ENST00000528057.5_3	chr11	64136073	64136175	MIR1237	+	miRNA	chr11	64126619	64139687	RPS6KA4	+	protein_coding	102	same	7995_ID	chr11	64136074	64136175	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	16
2800	ENST00000408492.1	ENST00000370575.5_4	chr10	100154974	100155064	MIR1287	-	miRNA	chr10	100143324	100174939	PYROXD2	-	protein_coding	90	same	8049_ID	chr10	100154975	100155064	90	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	16
2810	ENST00000408513.1	ENST00000650821.1_3	chr4	89127578	89127704	RNU6ATAC31P	-	snRNA	chr4	89011301	89152780	ABCG2	-	protein_coding	126	same	11675_ID	chr4	89127579	89127704	126	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
2870	ENST00000408637.1	ENST00000674281.1_1	chr12	65332802	65332897	RNU6ATAC42P	+	snRNA	chr12	65153275	65371289	AC078815.1	+	nonsense_mediated_decay	95	same	11683_ID	chr12	65332803	65332897	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
2882	ENST00000408668.1	ENST00000599111.5_4	chr19	48554680	48554766	AC010458.1	-	miRNA	chr19	48551099	48614074	PLA2G4C	-	protein_coding	86	same	1079_ID	chr19	48554681	48554766	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
2922	ENST00000408753.1	ENST00000367435.5_3	chr1	193105632	193105713	MIR1278	+	miRNA	chr1	193091160	193223945	CDC73	+	protein_coding	81	same	8037_ID	chr1	193105633	193105713	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
2931	ENST00000408781.2	ENST00000463477.5_3	chr9	9425460	9425558	AL353733.1	-	miRNA	chr9	8528151	10612723	PTPRD	-	protein_coding	98	same	5259_ID	chr9	9425461	9425558	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	16
2948	ENST00000408821.1	ENST00000328041.11_2	chr20	19321939	19322016	AL049647.1	+	miRNA	chr20	19193285	19703570	SLC24A3	+	protein_coding	77	same	4628_ID	chr20	19321940	19322016	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
3032	ENST00000410232.1	ENST00000461159.6_1	chr7	18847615	18847902	RN7SKP266	-	misc_RNA	chr7	18330044	18869015	HDAC9	+	retained_intron	287	opposite	9865_ID	chr7	18847616	18847902	287	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
3046	ENST00000410317.1	ENST00000637974.1_3	chr11	119160271	119160387	RNU6-262P	-	snRNA	chr11	119077133	119184636	CBL	+	protein_coding	116	opposite	11111_ID	chr11	119160272	119160387	116	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
3065	ENST00000410395.1	ENST00000374270.8_5	chr9	114900076	114900180	RNU6-855P	+	snRNA	chr9	114803062	114937577	SUSD1	-	protein_coding	104	opposite	11561_ID	chr9	114900077	114900180	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
3103	ENST00000410513.1	ENST00000368357.7_3	chr6	126196313	126196644	RN7SKP56	+	misc_RNA	chr6	126102306	126252257	NCOA7	+	protein_coding	331	same	9906_ID	chr6	126196314	126196644	331	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
3148	ENST00000410731.1	ENST00000393127.6_5	chr11	105695359	105695496	RNU4-55P	+	snRNA	chr11	105480799	105852819	GRIA4	+	protein_coding	137	same	10695_ID	chr11	105695360	105695496	137	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	16
3185	ENST00000410940.1	ENST00000487159.5_3	chr3	42263331	42263457	RNU4-78P	+	snRNA	chr3	42055293	42267381	TRAK1	+	protein_coding	126	same	10705_ID	chr3	42263332	42263457	126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
3217	ENST00000411120.1	ENST00000409850.5_3	chr7	29127803	29127927	AC007096.1	-	miRNA	chr7	29035252	29234892	CPVL	-	protein_coding	124	same	503_ID	chr7	29127804	29127927	124	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	16
3230	ENST00000411177.1	ENST00000426654.6_2	chr16	69599710	69599771	MIR1538	-	miRNA	chr16	69598996	69738553	NFAT5	+	nonsense_mediated_decay	61	opposite	8111_ID	chr16	69599711	69599771	61	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	16
3233	ENST00000411220.1	ENST00000329654.8_3	chr1	66560143	66560229	RNU4-88P	-	snRNA	chr1	66258196	66839961	PDE4B	+	protein_coding	86	opposite	10713_ID	chr1	66560144	66560229	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
3245	ENST00000411312.1	ENST00000170168.9_5	chr19	1816157	1816237	MIR1909	-	miRNA	chr19	1815246	1848482	REXO1	-	protein_coding	80	same	8136_ID	chr19	1816158	1816237	80	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	16
3400	ENST00000414547.1_3	ENST00000636680.2_3	chr3	29968301	29975647	RBMS3-AS1	-	lncRNA	chr3	28617665	30045525	RBMS3	+	protein_coding	7346	opposite	9716_ID	chr3	29968302	29975647	7346	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
3406	ENST00000414640.1_3	ENST00000366672.5_2	chr1	230416057	230417639	AL136988.1	-	lncRNA	chr1	230202984	230417868	GALNT2	+	protein_coding	1582	opposite	4931_ID	chr1	230416058	230417639	1582	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	16	16
3422	ENST00000414969.2_3	ENST00000646702.1_1	chr3	11047783	11060910	SLC6A1-AS1	-	lncRNA	chr3	11033871	11080860	SLC6A1	+	protein_coding	13127	opposite	12102_ID	chr3	11047784	11060910	13127	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	16
3423	ENST00000414989.2_3	ENST00000248933.11_3	chr22	26637296	26650058	SEZ6L-AS1	-	lncRNA	chr22	26565427	26779562	SEZ6L	+	protein_coding	12762	opposite	12046_ID	chr22	26637297	26650058	12762	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
3438	ENST00000415255.2_4	ENST00000372858.8_5	chr1	40030723	40039532	PABPC4-AS1	+	lncRNA	chr1	40026487	40042462	PABPC4	-	protein_coding	8809	opposite	9492_ID	chr1	40030724	40039532	8809	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	16
3467	ENST00000415982.1_3	ENST00000356401.9_2	chr3	49017350	49021418	AC137630.2	-	lncRNA	chr3	48956274	49023815	ARIH2	+	protein_coding	4068	opposite	4166_ID	chr3	49017351	49021418	4068	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	13	16
3473	ENST00000416119.1_3	ENST00000371316.3_2	chr1	55087149	55094111	AL590093.1	-	lncRNA	chr1	55013900	55104865	ACOT11	+	protein_coding	6962	opposite	5751_ID	chr1	55087150	55094111	6962	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	16
3487	ENST00000416455.1_1	ENST00000375315.7_2	chr9	97662710	97667036	AL807757.2	+	lncRNA	chr9	97488885	97849441	AOPEP	+	protein_coding	4326	same	5912_ID	chr9	97662711	97667036	4326	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
3489	ENST00000416513.1_1	ENST00000409850.5_3	chr7	29119899	29122143	CPVL-AS1	+	lncRNA	chr7	29035252	29234892	CPVL	-	protein_coding	2244	opposite	6704_ID	chr7	29119900	29122143	2244	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	16
3555	ENST00000418571.2_3	ENST00000463477.5_3	chr9	8700594	8701552	AL583805.2	-	lncRNA	chr9	8528151	10612723	PTPRD	-	protein_coding	958	same	5721_ID	chr9	8700595	8701552	958	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	16
3598	ENST00000419824.1_1	ENST00000463477.5_3	chr9	8936078	8963077	AL596451.1	+	lncRNA	chr9	8528151	10612723	PTPRD	-	protein_coding	26999	opposite	5829_ID	chr9	8936079	8963077	26999	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
3620	ENST00000420225.1_3	ENST00000433831.5_1	chr22	20876356	20878157	AC007731.3	-	lncRNA	chr22	20861871	20941906	MED15	+	nonsense_mediated_decay	1801	opposite	644_ID	chr22	20876357	20878157	1801	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
3651	ENST00000421167.1_3	ENST00000274695.8_3	chr6	20756333	20800925	AL513188.1	-	lncRNA	chr6	20534687	21232635	CDKAL1	+	protein_coding	44592	opposite	5703_ID	chr6	20756334	20800925	44592	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	16
3653	ENST00000421261.1_1	ENST00000615550.5_2	chr6	57358806	57362565	FO680682.1	+	lncRNA	chr6	57182427	57513376	PRIM2	+	protein_coding	3759	same	7054_ID	chr6	57358807	57362565	3759	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	16
3670	ENST00000421645.2_3	ENST00000382303.5_1	chr9	673477	685555	AL136979.1	-	lncRNA	chr9	470290	746105	KANK1	+	protein_coding	12078	opposite	4922_ID	chr9	673478	685555	12078	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	6	16
3716	ENST00000422657.1_3	ENST00000253697.8_3	chr3	14806458	14808947	AC090957.1	-	lncRNA	chr3	14716647	14814543	C3orf20	+	protein_coding	2489	opposite	2957_ID	chr3	14806459	14808947	2489	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	16
3749	ENST00000423367.1_1	ENST00000676445.1_1	chr18	25534482	25543651	AC110015.1	+	lncRNA	chr18	25531618	25757910	CDH2	-	protein_coding	9169	opposite	3782_ID	chr18	25534483	25543651	9169	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	16
3751	ENST00000423460.1_3	ENST00000330198.8_2	chr3	197765191	197766105	LMLN-AS1	-	lncRNA	chr3	197687070	197770591	LMLN	+	protein_coding	914	opposite	7835_ID	chr3	197765192	197766105	914	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	16	16
3771	ENST00000424138.1_3	ENST00000329654.8_3	chr1	66508182	66516401	PDE4B-AS1	-	lncRNA	chr1	66258196	66839961	PDE4B	+	protein_coding	8219	opposite	9524_ID	chr1	66508183	66516401	8219	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
3800	ENST00000424834.6_3	ENST00000382141.4_1	chr13	24553943	24881207	SPATA13	+	protein_coding	chr13	24553838	24895169	AL359736.1	+	nonsense_mediated_decay	327269	same	12508_ID	chr13	24553944	24881207	327264	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	16
3853	ENST00000426737.1_3	ENST00000368972.7_2	chr6	109244178	109245306	ARMC2-AS1	-	lncRNA	chr6	109169618	109295675	ARMC2	+	protein_coding	1128	opposite	6342_ID	chr6	109244179	109245306	1128	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	16
3858	ENST00000426901.1_1	ENST00000610401.4_3	chr1	54751077	54753044	AL161644.1	+	lncRNA	chr1	54691105	54872068	SSBP3	-	protein_coding	1967	opposite	5151_ID	chr1	54751078	54753044	1967	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	16
3895	ENST00000428335.1_3	ENST00000308624.10_2	chr2	1153995	1156110	AC114808.2	-	lncRNA	chr2	946534	1371385	SNTG2	+	protein_coding	2115	opposite	3878_ID	chr2	1153996	1156110	2115	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	16
4109	ENST00000434273.2_1	ENST00000261488.10_3	chr13	44032600	44033620	ENOX1-AS2	+	lncRNA	chr13	43787653	44361044	ENOX1	-	protein_coding	1020	opposite	6909_ID	chr13	44032601	44033620	1020	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
4216	ENST00000437088.1_1	ENST00000297029.10_3	chr7	12693803	12694610	AC011891.2	+	lncRNA	chr7	12610345	12699807	SCIN	+	protein_coding	807	same	1305_ID	chr7	12693804	12694610	807	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	16	16
4223	ENST00000437132.1_3	ENST00000308624.10_2	chr2	1054818	1064027	AC114808.1	-	lncRNA	chr2	946534	1371385	SNTG2	+	protein_coding	9209	opposite	3877_ID	chr2	1054819	1064027	9209	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
4244	ENST00000437846.1_1	ENST00000375315.7_2	chr9	97586553	97587055	AL807757.1	+	lncRNA	chr9	97488885	97849441	AOPEP	+	protein_coding	502	same	5911_ID	chr9	97586554	97587055	502	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
4253	ENST00000438267.1_3	ENST00000339746.9_5	chr6	90270593	90276763	AL159174.1	-	lncRNA	chr6	90142870	90343540	ANKRD6	+	protein_coding	6170	opposite	5123_ID	chr6	90270594	90276763	6170	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	16
4316	ENST00000439872.1_3	ENST00000375315.7_2	chr9	97690832	97697228	AL353768.1	-	lncRNA	chr9	97488885	97849441	AOPEP	+	protein_coding	6396	opposite	5261_ID	chr9	97690833	97697228	6396	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	16
4318	ENST00000439928.2_1	ENST00000382141.4_1	chr13	24553948	24609166	AL445985.1	+	lncRNA	chr13	24553838	24895169	AL359736.1	+	nonsense_mediated_decay	55218	same	5638_ID	chr13	24553949	24609166	55218	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	16
4339	ENST00000440516.1_3	ENST00000270722.10_3	chr1	3049490	3050273	AL008733.1	-	lncRNA	chr1	2985766	3355185	PRDM16	+	protein_coding	783	opposite	4436_ID	chr1	3049491	3050273	783	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
4350	ENST00000440729.2_4	ENST00000366672.5_2	chr1	230394439	230407846	AL136988.2	-	lncRNA	chr1	230202984	230417868	GALNT2	+	protein_coding	13407	opposite	4932_ID	chr1	230394440	230407846	13407	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	16
4372	ENST00000441414.1_1	ENST00000370475.9_3	chrX	147028460	147029103	FMR1-IT1	+	lncRNA	chrX	146993436	147032645	FMR1	+	protein_coding	643	same	7049_ID	chrX	147028461	147029103	643	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
4373	ENST00000441428.1_3	ENST00000217246.8_3	chr20	14914488	14916009	AL138808.1	-	lncRNA	chr20	13976014	16033842	MACROD2	+	protein_coding	1521	opposite	4979_ID	chr20	14914489	14916009	1521	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
4393	ENST00000442103.1_3	ENST00000265382.8_2	chr9	71437318	71458191	AL354794.1	-	lncRNA	chr9	71320155	71624092	PIP5K1B	+	protein_coding	20873	opposite	5286_ID	chr9	71437319	71458191	20873	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	16
4450	ENST00000443837.1_3	ENST00000425013.6_3	chr7	5702062	5720092	RNF216-IT1	-	lncRNA	chr7	5659677	5821327	RNF216	-	protein_coding	18030	same	10545_ID	chr7	5702063	5720092	18030	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	16
4467	ENST00000444442.1_1	ENST00000261488.10_3	chr13	44118053	44122192	ENOX1-AS1	+	lncRNA	chr13	43787653	44361044	ENOX1	-	protein_coding	4139	opposite	6908_ID	chr13	44118054	44122192	4139	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
4527	ENST00000446246.1_3	ENST00000644824.1_2	chr7	29239155	29248586	CHN2-AS1	-	lncRNA	chr7	29161955	29554283	AC004593.2	+	protein_coding	9431	opposite	6646_ID	chr7	29239156	29248586	9431	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
4565	ENST00000447119.2_3	ENST00000335350.10_4	chr10	72976980	72977985	UNC5B-AS1	-	lncRNA	chr10	72972326	73062621	UNC5B	+	protein_coding	1005	opposite	12847_ID	chr10	72976981	72977985	1005	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
4573	ENST00000447344.1_3	ENST00000521006.5_1	chr10	102740263	102745371	AL133215.1	-	lncRNA	chr10	102729279	102745373	SEMA4G	+	nonsense_mediated_decay	5108	opposite	4822_ID	chr10	102740264	102745371	5108	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	12	16
4594	ENST00000447909.1_3	ENST00000614565.5_5	chr20	60313274	60330112	AL162457.2	-	lncRNA	chr20	59827316	60515673	CDH4	+	protein_coding	16838	opposite	5203_ID	chr20	60313275	60330112	16838	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	16
4610	ENST00000448536.1_1	ENST00000217246.8_3	chr20	14535029	14609554	MACROD2-IT1	+	lncRNA	chr20	13976014	16033842	MACROD2	+	protein_coding	82141	same	7901_ID	chr20	14535030	14609554	74525	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	16
4636	ENST00000449214.1_1	ENST00000647101.1_6	chr21	15954522	15970624	SAMSN1-AS1	+	lncRNA	chr21	15857548	16031142	SAMSN1	-	protein_coding	16102	opposite	11987_ID	chr21	15954523	15970624	16102	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	16
4637	ENST00000449215.2_4	ENST00000636203.1_2	chr1	14548385	14630940	AL357873.1	-	lncRNA	chr1	14219286	15444539	KAZN	+	protein_coding	82559	opposite	5436_ID	chr1	14548386	14630940	82555	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
4646	ENST00000449531.1_1	ENST00000463477.5_3	chr9	9799422	9803784	AL513422.1	+	lncRNA	chr9	8528151	10612723	PTPRD	-	protein_coding	4362	opposite	5711_ID	chr9	9799423	9803784	4362	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
4811	ENST00000453972.1_3	ENST00000217246.8_3	chr20	15532801	15533530	AL121584.1	-	lncRNA	chr20	13976014	16033842	MACROD2	+	protein_coding	6312	opposite	4739_ID	chr20	15532802	15533530	729	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	16
4860	ENST00000455392.6_1	ENST00000399914.5_5	chr21	31120493	31135999	GRIK1-AS1	+	lncRNA	chr21	30909253	31312340	GRIK1	-	protein_coding	15828	opposite	7178_ID	chr21	31120494	31135999	15506	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
4865	ENST00000455534.1_3	ENST00000341911.10_4	chr6	135516220	135517133	MYB-AS1	-	lncRNA	chr6	135502445	135540310	MYB	+	protein_coding	913	opposite	9190_ID	chr6	135516221	135517133	913	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	16
4936	ENST00000457168.2_1	ENST00000413366.8_2	chr17	64672489	64673522	AC006947.1	+	lncRNA	chr17	64298730	64806861	PRKCA	+	protein_coding	1033	same	489_ID	chr17	64672490	64673522	1033	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
4949	ENST00000457467.1_3	ENST00000308624.10_2	chr2	1344815	1350340	AC108462.1	-	lncRNA	chr2	946534	1371385	SNTG2	+	protein_coding	5525	opposite	3737_ID	chr2	1344816	1350340	5525	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
4982	ENST00000458568.1_3	ENST00000361926.8_2	chr17	8221405	8222030	AC135178.2	-	lncRNA	chr17	8213558	8225829	ARHGEF15	+	protein_coding	625	opposite	4141_ID	chr17	8221406	8222030	625	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	16
4997	ENST00000458797.1	ENST00000334256.9_5	chr3	160232694	160233024	SCARNA7	-	snoRNA	chr3	160212794	160283359	KPNA4	-	protein_coding	330	same	11998_ID	chr3	160232695	160233024	330	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
5069	ENST00000459215.1	ENST00000463477.5_3	chr9	8797134	8797194	RNU7-185P	+	snRNA	chr9	8528151	10612723	PTPRD	-	protein_coding	60	opposite	11751_ID	chr9	8797135	8797194	60	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
5091	ENST00000459337.1	ENST00000535621.6_2	chr16	15104177	15104254	MIR1972-1	-	miRNA	chr16	15068868	15233196	PDXDC1	+	protein_coding	77	opposite	8158_ID	chr16	15104178	15104254	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	16
5105	ENST00000459421.1	ENST00000369287.8_7	chr10	115933863	115933938	MIR2110	-	miRNA	chr10	115880620	115933962	CCDC186	-	protein_coding	75	same	8175_ID	chr10	115933864	115933938	75	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	16
5171	ENST00000461926.2	ENST00000262457.7_5	chr9	102864840	102865119	RN7SL75P	+	misc_RNA	chr9	102861524	103064457	INVS	+	protein_coding	279	same	10414_ID	chr9	102864841	102865119	279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
5285	ENST00000469709.2	ENST00000397809.10_4	chr12	94754995	94755300	RN7SL330P	+	misc_RNA	chr12	94701473	94853643	CEP83	-	protein_coding	305	opposite	10111_ID	chr12	94754996	94755300	305	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	16
5288	ENST00000469794.1_3	ENST00000651503.2_5	chr3	169331297	169341739	AC007849.1	-	lncRNA	chr3	168801294	169381500	MECOM	-	protein_coding	10442	same	651_ID	chr3	169331298	169341739	10442	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
5312	ENST00000471015.2	ENST00000413366.8_2	chr17	64360146	64360436	RN7SL735P	+	misc_RNA	chr17	64298730	64806861	PRKCA	+	protein_coding	290	same	10390_ID	chr17	64360147	64360436	290	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
5372	ENST00000474115.2_1	ENST00000327946.12_4	chr10	87403829	87407823	AC022028.2	+	lncRNA	chr10	87359308	88126552	GRID1	-	protein_coding	3994	opposite	1814_ID	chr10	87403830	87407823	3994	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	16
5400	ENST00000476501.2	ENST00000436342.6_3	chr1	28358396	28358691	RN7SL559P	-	misc_RNA	chr1	28296857	28415148	EYA3	-	protein_coding	295	same	10269_ID	chr1	28358397	28358691	295	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
5453	ENST00000480669.1_1	ENST00000651503.2_5	chr3	169165654	169194840	MECOM-AS1	+	lncRNA	chr3	168801294	169381500	MECOM	-	protein_coding	29186	opposite	7937_ID	chr3	169165655	169194840	29186	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
5478	ENST00000482372.1_1	ENST00000295966.11_4	chr3	58810196	59004819	CFAP20DC-AS1	+	lncRNA	chr3	58727732	59035810	CFAP20DC	-	protein_coding	194657	opposite	6625_ID	chr3	58810197	59004819	194623	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	5	16
5489	ENST00000482973.2	ENST00000488290.5_3	chr10	30654961	30655247	RN7SL241P	-	misc_RNA	chr10	30601938	30663370	MTPAP	-	processed_transcript	286	same	10049_ID	chr10	30654962	30655247	286	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	16
5496	ENST00000483759.2_3	ENST00000458420.7_2	chr3	140179841	140181667	AC010181.2	-	lncRNA	chr3	139654026	140296239	CLSTN2	+	protein_coding	1826	opposite	1030_ID	chr3	140179842	140181667	1826	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	16
5587	ENST00000490153.1_1	ENST00000316549.11_4	chr3	143100179	143101003	SLC9A9-AS2	+	lncRNA	chr3	142984063	143567310	SLC9A9	-	protein_coding	824	opposite	12109_ID	chr3	143100180	143101003	824	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	16
5643	ENST00000493457.2	ENST00000217246.8_3	chr20	14203686	14203976	RN7SL864P	+	misc_RNA	chr20	13976014	16033842	MACROD2	+	protein_coding	290	same	10491_ID	chr20	14203687	14203976	290	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
5700	ENST00000498222.2	ENST00000383788.10_8	chr3	15548131	15548412	RN7SL110P	-	misc_RNA	chr3	15491639	15563213	COLQ	-	protein_coding	281	same	9946_ID	chr3	15548132	15548412	281	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
5729	ENST00000500224.2_2	ENST00000502484.6_5	chr5	58335587	58359330	AC092343.1	+	lncRNA	chr5	58270483	59783903	PDE4D	-	protein_coding	23743	opposite	3081_ID	chr5	58335588	58359330	23743	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	16
5777	ENST00000502993.1_1	ENST00000502484.6_5	chr5	59317075	59326799	AC034234.1	+	lncRNA	chr5	58270483	59783903	PDE4D	-	protein_coding	11772	opposite	2264_ID	chr5	59317076	59326799	9724	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
6015	ENST00000510640.1_1	ENST00000361737.9_4	chr4	8068254	8069451	AC097381.2	+	lncRNA	chr4	7967038	8160538	ABLIM2	-	protein_coding	1197	opposite	3308_ID	chr4	8068255	8069451	1197	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	16
6104	ENST00000513093.1_1	ENST00000306100.10_5	chr4	162943884	162968719	AC023136.1	+	lncRNA	chr4	162305048	163085152	FSTL5	-	protein_coding	24835	opposite	1934_ID	chr4	162943885	162968719	24835	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	16
6110	ENST00000513309.1_3	ENST00000458420.7_2	chr3	140224452	140227631	CLSTN2-AS1	-	lncRNA	chr3	139654026	140296239	CLSTN2	+	protein_coding	3179	opposite	6669_ID	chr3	140224453	140227631	3179	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	16
6213	ENST00000515924.1	ENST00000380502.8_5	chr9	19063653	19063784	SCARNA8	-	snoRNA	chr9	19053138	19102902	HAUS6	-	protein_coding	131	same	11999_ID	chr9	19063654	19063784	131	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
6331	ENST00000516272.1	ENST00000393127.6_5	chr11	105845552	105845658	RNU6-277P	-	snRNA	chr11	105480799	105852819	GRIA4	+	protein_coding	106	opposite	11121_ID	chr11	105845553	105845658	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
6354	ENST00000516342.1	ENST00000636203.1_2	chr1	14450727	14450830	RNU6-1265P	-	snRNA	chr1	14219286	15444539	KAZN	+	protein_coding	103	opposite	10958_ID	chr1	14450728	14450830	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
6355	ENST00000516344.1	ENST00000375315.7_2	chr9	97572243	97572339	MIR2278	+	miRNA	chr9	97488885	97849441	AOPEP	+	protein_coding	96	same	8198_ID	chr9	97572244	97572339	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
6379	ENST00000516414.1	ENST00000409914.7_4	chr2	130866776	130866883	RNU6-1049P	-	snRNA	chr2	130831107	130886795	POTEF	-	protein_coding	107	same	10793_ID	chr2	130866777	130866883	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	16
6397	ENST00000516471.1	ENST00000325006.7_2	chr7	129045475	129045537	RNU7-16P	+	snRNA	chr7	128864863	129070052	AHCYL2	+	protein_coding	62	same	11739_ID	chr7	129045476	129045537	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	16
6452	ENST00000516633.1	ENST00000634618.1_1	chr3	20234273	20234366	RNY4P22	-	misc_RNA	chr3	20227846	20920327	SGO1-AS1	+	lncRNA	93	opposite	11854_ID	chr3	20234274	20234366	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
6454	ENST00000516637.1	ENST00000399273.5_2	chr17	16595111	16595221	RNU6-405P	+	snRNA	chr17	16593554	16681195	CCDC144A	+	protein_coding	110	same	11214_ID	chr17	16595112	16595221	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
6499	ENST00000516770.1	ENST00000647079.1_1	chr16	89599923	89599962	RNU7-117P	-	snRNA	chr16	89557324	89624156	SPG7	+	protein_coding	39	opposite	11703_ID	chr16	89599924	89599962	39	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	16
6531	ENST00000516876.1	ENST00000413366.8_2	chr17	64634388	64634492	RNU6-928P	+	snRNA	chr17	64298730	64806861	PRKCA	+	protein_coding	104	same	11616_ID	chr17	64634389	64634492	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
6591	ENST00000517029.1	ENST00000307149.10_4	chr16	23424904	23425197	RN7SKP23	-	misc_RNA	chr16	23399813	23464510	COG7	-	protein_coding	293	same	9835_ID	chr16	23424905	23425197	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	16
6634	ENST00000517134.1	ENST00000380502.8_5	chr9	19073840	19073944	RNU6-264P	+	snRNA	chr9	19053138	19102902	HAUS6	-	protein_coding	104	opposite	11112_ID	chr9	19073841	19073944	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	16
6687	ENST00000517254.1	ENST00000534526.6_1	chr12	32630315	32630405	RNU6-494P	-	snRNA	chr12	32552462	32793467	FGD4	+	protein_coding	90	opposite	11280_ID	chr12	32630316	32630405	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
6691	ENST00000517262.1	ENST00000544378.6_4	chr17	5417528	5417590	RNU7-31P	-	snRNA	chr17	5402746	5487829	NLRP1	-	nonsense_mediated_decay	62	same	11773_ID	chr17	5417529	5417590	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	16
6928	ENST00000523935.1_1	ENST00000521548.5_3	chr8	28304780	28313204	AC025871.1	+	lncRNA	chr8	28205803	28347773	FBXO16	-	nonsense_mediated_decay	8639	opposite	2109_ID	chr8	28304781	28313204	8424	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	16
7036	ENST00000528133.1_1	ENST00000298281.8_1	chr11	82891185	82895562	AP000873.4	+	lncRNA	chr11	82868029	82898493	PCF11	+	protein_coding	4377	same	6043_ID	chr11	82891186	82895562	4377	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	16
7038	ENST00000528210.1_4	ENST00000250416.9_2	chr14	20812391	20815047	AL355075.1	-	lncRNA	chr14	20811773	20826063	PARP2	+	protein_coding	2656	opposite	5313_ID	chr14	20812392	20815047	2656	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	16
7063	ENST00000529215.1_1	ENST00000420843.7_5	chr11	74971170	74972069	AP001972.1	+	lncRNA	chr11	74971165	75062705	ARRB1	-	protein_coding	899	opposite	6171_ID	chr11	74971171	74972069	899	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	16	16
7066	ENST00000529304.1_1	ENST00000420843.7_5	chr11	74975332	74976214	AP001972.2	+	lncRNA	chr11	74971165	75062705	ARRB1	-	protein_coding	882	opposite	6172_ID	chr11	74975333	74976214	882	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	16	16
7105	ENST00000530572.1_3	ENST00000525144.7_5	chr11	126790083	126810555	AP002833.1	-	lncRNA	chr11	126293252	126870666	KIRREL3	-	protein_coding	20472	same	6212_ID	chr11	126790084	126810555	20472	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
7108	ENST00000530805.1_3	ENST00000417856.5_1	chr11	66032247	66033137	AP001107.8	-	lncRNA	chr11	66024764	66035330	KLC2	+	protein_coding	890	opposite	6096_ID	chr11	66032248	66033137	890	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	16
7135	ENST00000531585.1_1	ENST00000525144.7_5	chr11	126862347	126865354	AP002833.2	+	lncRNA	chr11	126293252	126870666	KIRREL3	-	protein_coding	3007	opposite	6213_ID	chr11	126862348	126865354	3007	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
7176	ENST00000532988.1_2	ENST00000525144.7_5	chr11	126810641	126814984	KIRREL3-AS2	+	lncRNA	chr11	126293252	126870666	KIRREL3	-	protein_coding	4345	opposite	7449_ID	chr11	126810642	126814984	4343	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
7190	ENST00000533576.1_3	ENST00000417856.5_1	chr11	66027037	66029305	AP001107.4	-	lncRNA	chr11	66024764	66035330	KLC2	+	protein_coding	2268	opposite	6095_ID	chr11	66027038	66029305	2268	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	16
7193	ENST00000533740.1_3	ENST00000336898.8_4	chr11	75217981	75219436	AP002815.1	-	lncRNA	chr11	75145684	75236986	GDPD5	-	protein_coding	1455	same	6211_ID	chr11	75217982	75219436	1455	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
7289	ENST00000539393.5_2	ENST00000307378.10_3	chr12	21507892	21531429	IAPP	+	protein_coding	chr12	21417533	21548371	SLCO1A2	-	protein_coding	25022	opposite	7321_ID	chr12	21507893	21531429	23537	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	16
7293	ENST00000539568.2_1	ENST00000359674.8_3	chr12	312807	314260	SLC6A12-AS1	+	lncRNA	chr12	299242	322863	SLC6A12	-	protein_coding	1453	opposite	12103_ID	chr12	312808	314260	1453	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	16
7365	ENST00000544067.1_1	ENST00000359674.8_3	chr12	302201	303296	AC007406.1	+	lncRNA	chr12	299242	322863	SLC6A12	-	protein_coding	1095	opposite	571_ID	chr12	302202	303296	1095	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	16
7369	ENST00000544195.1_1	ENST00000294053.9_6	chr11	72062390	72064254	AP002892.2	+	lncRNA	chr11	71996538	72145575	CLPB	-	protein_coding	1864	opposite	6217_ID	chr11	72062391	72064254	1864	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	16
7383	ENST00000544959.1_1	ENST00000294053.9_6	chr11	72121759	72123123	AP003785.1	+	lncRNA	chr11	71996538	72145575	CLPB	-	protein_coding	1364	opposite	6274_ID	chr11	72121760	72123123	1364	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
7403	ENST00000546118.1_1	ENST00000646273.1_3	chr12	23790906	23791421	AC087260.1	+	lncRNA	chr12	23686720	24715383	SOX5	-	protein_coding	515	opposite	2788_ID	chr12	23790907	23791421	515	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
7513	ENST00000550747.1_1	ENST00000525144.7_5	chr11	126522746	126551998	AP001783.1	+	lncRNA	chr11	126293252	126870666	KIRREL3	-	protein_coding	29253	opposite	6161_ID	chr11	126522747	126551998	29252	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
7599	ENST00000554055.1_1	ENST00000395686.8_4	chr14	53107556	53108284	AL133453.1	+	lncRNA	chr14	53106632	53162276	ERO1A	-	protein_coding	728	opposite	4859_ID	chr14	53107557	53108284	728	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	16	16
7687	ENST00000556770.1_3	ENST00000327097.4_1	chr2	119706881	119710559	AC013457.1	-	lncRNA	chr2	119699741	119752236	MARCO	+	protein_coding	3678	opposite	1444_ID	chr2	119706882	119710559	3678	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
7723	ENST00000557964.1_1	ENST00000268130.12_3	chr15	90247895	90248646	AC079075.1	+	lncRNA	chr15	90234041	90286869	WDR93	+	protein_coding	751	same	2619_ID	chr15	90247896	90248646	751	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
7771	ENST00000558838.1_1	ENST00000677364.1_1	chr15	101835623	101845942	AC023024.1	+	lncRNA	chr15	101829988	101933593	PCSK6	-	protein_coding	10319	opposite	1926_ID	chr15	101835624	101845942	10319	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	15	16
7884	ENST00000561624.2_1	ENST00000307149.10_4	chr16	23457766	23458603	AC008915.1	-	lncRNA	chr16	23399813	23464510	COG7	-	protein_coding	837	same	832_ID	chr16	23457767	23458603	837	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
7963	ENST00000563036.2_3	ENST00000567298.5_4	chr16	87773376	87781312	AC010536.2	-	lncRNA	chr16	87731754	87799578	KLHDC4	-	nonsense_mediated_decay	7936	same	1099_ID	chr16	87773377	87781312	7936	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
7993	ENST00000563559.5_4	ENST00000535621.6_2	chr16	15153891	15188168	RRN3	-	protein_coding	chr16	15068868	15233196	PDXDC1	+	protein_coding	34279	opposite	11966_ID	chr16	15153892	15188168	34277	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
8084	ENST00000565623.1_3	ENST00000647079.1_1	chr16	89558424	89570868	AC092123.1	-	lncRNA	chr16	89557324	89624156	SPG7	+	protein_coding	12444	opposite	3056_ID	chr16	89558425	89570868	12444	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
8147	ENST00000566804.1_1	ENST00000634618.1_1	chr3	20429740	20432054	AC116096.1	+	lncRNA	chr3	20227846	20920327	SGO1-AS1	+	lncRNA	2314	same	3895_ID	chr3	20429741	20432054	2314	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	16
8265	ENST00000569353.1_3	ENST00000299138.12_4	chr16	46694607	46695503	AC012186.2	-	lncRNA	chr16	46690043	46723090	VPS35	-	protein_coding	896	same	1347_ID	chr16	46694608	46695503	896	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
8307	ENST00000570581.1_3	ENST00000571589.6_3	chr16	14285676	14294134	AC130650.1	-	lncRNA	chr16	14165175	14360630	MRTFB	+	protein_coding	8458	opposite	4072_ID	chr16	14285677	14294134	8458	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
8352	ENST00000573063.1_1	ENST00000564704.5_1	chr16	67295010	67297687	AC040160.1	+	retained_intron	chr16	67271585	67306093	SLC9A5	+	retained_intron	2677	same	2289_ID	chr16	67295011	67297687	2677	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	16
8360	ENST00000573568.1_3	ENST00000572705.1_4	chr17	3481248	3482147	AC027796.5	-	lncRNA	chr17	3468737	3512705	TRPV1	-	protein_coding	899	same	2235_ID	chr17	3481249	3482147	899	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	16
8399	ENST00000575593.1_1	ENST00000572705.1_4	chr17	3505054	3505566	AC027796.1	-	lncRNA	chr17	3468737	3512705	TRPV1	-	protein_coding	512	same	2233_ID	chr17	3505055	3505566	512	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
8525	ENST00000577653.1	ENST00000622768.4_4	chrX	122598935	122599026	AL356213.1	+	miRNA	chrX	122318095	122624756	GRIA3	+	protein_coding	91	same	5374_ID	chrX	122598936	122599026	91	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	16
8535	ENST00000577685.1	ENST00000661030.1_3	chr1	79600817	79600911	AC093430.1	-	miRNA	chr1	79355644	79747809	ADGRL4	-	protein_coding	94	same	3205_ID	chr1	79600818	79600911	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
8596	ENST00000577972.1	ENST00000534300.5_4	chr11	46473354	46473439	MIR3160-2	-	miRNA	chr11	46417963	46615571	AMBRA1	-	protein_coding	85	same	8281_ID	chr11	46473355	46473439	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	16
8624	ENST00000578183.1_1	ENST00000270570.8_2	chr17	19460523	19461224	SNORA59B	+	snoRNA	chr17	19437166	19482347	SLC47A1	+	protein_coding	701	same	12187_ID	chr17	19460524	19461224	701	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	16
8632	ENST00000578227.1	ENST00000393815.6_1	chr4	158281266	158281378	AC079233.1	+	miRNA	chr4	158141819	158287221	GRIA2	+	protein_coding	112	same	2633_ID	chr4	158281267	158281378	112	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	16
8639	ENST00000578274.1	ENST00000634606.1_1	chr1	60198898	60198968	MIR4711	-	miRNA	chr1	59762478	60276319	FGGY	+	nonsense_mediated_decay	70	opposite	8698_ID	chr1	60198899	60198968	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
8649	ENST00000578353.1	ENST00000373063.7_3	chr6	41566460	41566526	MIR4641	+	miRNA	chr6	41514163	41570122	FOXP4	+	protein_coding	66	same	8627_ID	chr6	41566461	41566526	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
8742	ENST00000578908.1	ENST00000396331.5_2	chr19	55140842	55140914	AC009892.1	-	miRNA	chr19	55128611	55148979	LILRB1	+	protein_coding	72	opposite	1003_ID	chr19	55140843	55140914	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
8840	ENST00000579503.1	ENST00000649063.2_3	chr7	4828195	4828270	MIR4656	-	miRNA	chr7	4815253	4834028	AP5Z1	+	protein_coding	75	opposite	8646_ID	chr7	4828196	4828270	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
8862	ENST00000579623.1	ENST00000525144.7_5	chr11	126858353	126858438	MIR3167	-	miRNA	chr11	126293252	126870666	KIRREL3	-	protein_coding	85	same	8289_ID	chr11	126858354	126858438	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
8905	ENST00000579846.1	ENST00000379643.10_5	chrX	20035205	20035305	MIR23C	-	miRNA	chrX	20024830	20135025	MAP7D2	-	protein_coding	100	same	8203_ID	chrX	20035206	20035305	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	16
8906	ENST00000579857.1	ENST00000368648.8_5	chr10	131641562	131641638	MIR4297	-	miRNA	chr10	131633546	131771317	EBF3	-	protein_coding	76	same	8493_ID	chr10	131641563	131641638	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
8932	ENST00000579979.1_1	ENST00000389641.9_5	chr17	80111305	80112691	AC129510.1	+	lncRNA	chr17	80059345	80170689	CCDC57	-	protein_coding	1386	opposite	4053_ID	chr17	80111306	80112691	1386	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	16
8938	ENST00000580007.1_1	ENST00000383578.7_3	chr18	706522	707648	AP001178.2	+	lncRNA	chr18	670323	712662	ENOSF1	-	protein_coding	1126	opposite	6106_ID	chr18	706523	707648	1126	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	16
9031	ENST00000580582.1	ENST00000458420.7_2	chr3	140122261	140122345	AC092988.1	+	miRNA	chr3	139654026	140296239	CLSTN2	+	protein_coding	84	same	3178_ID	chr3	140122262	140122345	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
9059	ENST00000580703.1	ENST00000370752.4_4	chrX	134702491	134702591	AL391380.1	-	miRNA	chrX	134654583	134716434	INTS6L	+	protein_coding	100	opposite	5575_ID	chrX	134702492	134702591	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	16
9060	ENST00000580704.1	ENST00000399273.5_2	chr17	16613372	16613673	RN7SL620P	+	misc_RNA	chr17	16593554	16681195	CCDC144A	+	protein_coding	301	same	10314_ID	chr17	16613373	16613673	301	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
9141	ENST00000581102.1	ENST00000409645.5_2	chr2	134884695	134884763	MIR3679	+	miRNA	chr2	134877752	135212192	MGAT5	+	protein_coding	68	same	8383_ID	chr2	134884696	134884763	68	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
9155	ENST00000581187.1	ENST00000374630.8_3	chr1	23189651	23189719	MIR4253	-	miRNA	chr1	23037331	23247993	EPHB2	+	protein_coding	68	opposite	8455_ID	chr1	23189652	23189719	68	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	16
9193	ENST00000581458.1	ENST00000463477.5_3	chr9	9442059	9442347	RN7SL5P	+	misc_RNA	chr9	8528151	10612723	PTPRD	-	protein_coding	288	opposite	10296_ID	chr9	9442060	9442347	288	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	16
9205	ENST00000581555.1	ENST00000367081.7_3	chr6	159185692	159185785	MIR3918	-	miRNA	chr6	159071045	159185908	SYTL3	+	protein_coding	93	opposite	8422_ID	chr6	159185693	159185785	93	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	16	16
9244	ENST00000581799.1	ENST00000383788.10_8	chr3	15537745	15537815	MIR4270	-	miRNA	chr3	15491639	15563213	COLQ	-	protein_coding	70	same	8470_ID	chr3	15537746	15537815	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
9274	ENST00000581917.1_1	ENST00000586178.6_4	chr17	49326939	49329109	AC006141.1	-	lncRNA	chr17	49254785	49337410	MBTD1	-	protein_coding	2170	same	428_ID	chr17	49326940	49329109	2170	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
9386	ENST00000582542.1	ENST00000340941.11_2	chr5	70910810	70910911	AC143336.1	-	miRNA	chr5	70883166	70954533	MCCC2	+	protein_coding	101	opposite	4224_ID	chr5	70910811	70910911	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	16
9428	ENST00000582774.1_1	ENST00000389641.9_5	chr17	80117931	80118328	AC129510.2	+	lncRNA	chr17	80059345	80170689	CCDC57	-	protein_coding	397	opposite	4054_ID	chr17	80117932	80118328	397	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	16
9437	ENST00000582814.1	ENST00000358173.8_4	chr7	100418650	100418886	RN7SL750P	-	misc_RNA	chr7	100400186	100425145	EPHB4	-	protein_coding	236	same	10406_ID	chr7	100418651	100418886	236	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	16
9451	ENST00000582868.1	ENST00000357430.8_2	chr2	223797311	223797401	AC013476.1	-	miRNA	chr2	223725753	223809357	ACSL3	+	protein_coding	90	opposite	1447_ID	chr2	223797312	223797401	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	16
9657	ENST00000584057.1	ENST00000612630.4_4	chr19	4932698	4932752	MIR4747	+	miRNA	chr19	4903091	4962165	UHRF1	+	protein_coding	54	same	8734_ID	chr19	4932699	4932752	54	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	16
9692	ENST00000584223.1	ENST00000676793.1_1	chr19	4545206	4545463	RN7SL121P	+	misc_RNA	chr19	4542604	4581788	SEMA6B	-	protein_coding	257	opposite	9956_ID	chr19	4545207	4545463	257	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
9777	ENST00000584715.5_3	ENST00000413366.8_2	chr17	64394186	64412972	PRKCA-AS1	-	lncRNA	chr17	64298730	64806861	PRKCA	+	protein_coding	18786	opposite	9636_ID	chr17	64394187	64412972	18786	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
9870	ENST00000585204.1	ENST00000302541.11_2	chr3	40250495	40250793	RN7SL411P	+	misc_RNA	chr3	39851099	40301812	MYRIP	+	protein_coding	298	same	10163_ID	chr3	40250496	40250793	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	16
9929	ENST00000586259.1_1	ENST00000170168.9_5	chr19	1815247	1815872	AC012615.2	+	lncRNA	chr19	1815246	1848482	REXO1	-	protein_coding	625	opposite	1414_ID	chr19	1815248	1815872	625	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	16	16
9949	ENST00000586808.1_3	ENST00000589666.6_2	chr17	73814895	73816136	AC087289.1	-	lncRNA	chr17	73780886	73821880	UNK	+	protein_coding	1241	opposite	2801_ID	chr17	73814896	73816136	1241	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	16
10141	ENST00000593201.5_1	ENST00000170168.9_5	chr19	1822087	1824541	AC012615.6	+	lncRNA	chr19	1815246	1848482	REXO1	-	protein_coding	2454	opposite	1417_ID	chr19	1822088	1824541	2454	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	16
10264	ENST00000597119.1_1	ENST00000543982.5_3	chr19	44057596	44059646	L34079.2	+	lncRNA	chr19	44047463	44079715	XRCC1	-	protein_coding	2050	opposite	7499_ID	chr19	44057597	44059646	2050	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	16
10273	ENST00000597346.1_1	ENST00000155840.12_4	chr11	2629557	2721224	KCNQ1OT1	-	lncRNA	chr11	2466237	2870335	KCNQ1	+	protein_coding	91667	opposite	7426_ID	chr11	2629558	2721224	91667	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	16
10424	ENST00000602074.1	ENST00000375448.4_2	chr1	17655506	17676070	AC004824.2	-	protein_coding	chr1	17634691	17690499	PADI4	+	protein_coding	20564	opposite	172_ID	chr1	17655507	17676070	20564	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	16
10436	ENST00000602322.1_1	ENST00000298281.8_1	chr11	82896562	82898078	PCF11-AS1	-	lncRNA	chr11	82868029	82898493	PCF11	+	protein_coding	1516	opposite	9513_ID	chr11	82896563	82898078	1516	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	16	16
10587	ENST00000604219.1_1	ENST00000541687.5_4	chr2	75897114	75897580	AC005034.5	+	lncRNA	chr2	75889833	75938111	GCFC2	-	protein_coding	466	opposite	222_ID	chr2	75897115	75897580	466	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	14	16
10646	ENST00000605794.5_3	ENST00000535621.6_2	chr16	15198579	15225458	PKD1P6-NPIPP1	-	lncRNA	chr16	15068868	15233196	PDXDC1	+	protein_coding	26879	opposite	9568_ID	chr16	15198580	15225458	26879	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
10685	ENST00000606229.1_1	ENST00000234170.10_4	chr2	37436017	37439820	AC007390.1	+	lncRNA	chr2	37428754	37458739	CEBPZ	-	protein_coding	3803	opposite	565_ID	chr2	37436018	37439820	3803	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	16
10770	ENST00000607061.1_1	ENST00000270722.10_3	chr1	3223199	3226660	AL590438.1	-	lncRNA	chr1	2985766	3355185	PRDM16	+	protein_coding	3461	opposite	5768_ID	chr1	3223200	3226660	3461	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
10811	ENST00000607407.1_1	ENST00000487078.5_1	chr2	27276485	27277144	AC013472.2	-	lncRNA	chr2	27274513	27293490	AGBL5	+	nonsense_mediated_decay	659	opposite	1446_ID	chr2	27276486	27277144	659	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	16
10836	ENST00000607611.1_1	ENST00000271411.8_1	chr1	167348344	167350237	AL136984.1	+	lncRNA	chr1	167190126	167396582	POU2F1	+	nonsense_mediated_decay	1893	same	4928_ID	chr1	167348345	167350237	1893	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	16
10942	ENST00000608759.1_1	ENST00000399914.5_5	chr21	31029725	31030151	AP000238.1	+	lncRNA	chr21	30909253	31312340	GRIK1	-	protein_coding	426	opposite	5963_ID	chr21	31029726	31030151	426	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	16
10962	ENST00000608962.1_1	ENST00000361737.9_4	chr4	8024391	8024853	AC097381.3	+	lncRNA	chr4	7967038	8160538	ABLIM2	-	protein_coding	462	opposite	3309_ID	chr4	8024392	8024853	462	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
11006	ENST00000609473.1_1	ENST00000356401.9_2	chr3	49022917	49023396	AC137630.4	-	lncRNA	chr3	48956274	49023815	ARIH2	+	protein_coding	479	opposite	4167_ID	chr3	49022918	49023396	479	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	16	16
11009	ENST00000609490.1	ENST00000613503.5_2	chr19	2352573	2354800	LLfos-48D6.1	-	antisense	chr19	2328682	2355093	SPPL2B	+	protein_coding	2227	opposite	7831_ID	chr19	2352574	2354800	2227	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	16	16
11079	ENST00000610170.1_1	ENST00000413114.6_3	chr22	34318409	34318754	Z73429.1	+	lncRNA	chr22	33669062	34318829	LARGE1	-	protein_coding	345	opposite	12934_ID	chr22	34318410	34318754	345	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	16
11087	ENST00000610260.1_1	ENST00000281543.6_2	chr4	44695962	44696403	AC096586.2	-	lncRNA	chr4	44680436	44702945	GUF1	+	protein_coding	441	opposite	3281_ID	chr4	44695963	44696403	441	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	16
11132	ENST00000611259.1_1	ENST00000374759.8_5	chr17	79224993	79225603	AC027601.3	+	lncRNA	chr17	79218610	79269107	SLC38A10	-	protein_coding	610	opposite	2218_ID	chr17	79224994	79225603	610	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	16
11145	ENST00000611566.1_1	ENST00000398637.10_4	chr12	46632888	46633256	AC025031.3	-	lncRNA	chr12	46576845	46662826	SLC38A1	-	protein_coding	368	same	2045_ID	chr12	46632889	46633256	368	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
11154	ENST00000611728.1_1	ENST00000005386.8_4	chr12	48093183	48093700	AC004241.3	-	lncRNA	chr12	48055031	48099813	RPAP3	-	protein_coding	517	same	118_ID	chr12	48093184	48093700	517	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
11155	ENST00000611809.1_1	ENST00000533663.5_4	chr11	7721108	7721535	AC104237.3	-	lncRNA	chr11	7710668	7727968	OVCH2	-	protein_coding	427	same	3522_ID	chr11	7721109	7721535	427	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	16
11161	ENST00000612009.1_1	ENST00000414834.6_1	chr12	32878181	32878594	AC084824.5	-	lncRNA	chr12	32832133	32898584	DNM1L	+	protein_coding	413	opposite	2767_ID	chr12	32878182	32878594	413	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	16
11176	ENST00000612456.1_1	ENST00000533663.5_4	chr11	7720497	7720940	AC104237.2	-	lncRNA	chr11	7710668	7727968	OVCH2	-	protein_coding	443	same	3521_ID	chr11	7720498	7720940	443	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	16
11225	ENST00000613523.1_1	ENST00000618996.4_2	chr17	71199106	71199570	AC097641.2	-	lncRNA	chr17	71188770	71204642	COG1	+	protein_coding	464	opposite	3332_ID	chr17	71199107	71199570	464	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	16
11254	ENST00000614150.1_1	ENST00000368648.8_5	chr10	131643591	131644159	AL354950.1	+	lncRNA	chr10	131633546	131771317	EBF3	-	protein_coding	568	opposite	5299_ID	chr10	131643592	131644159	568	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
11389	ENST00000617439.1_1	ENST00000251038.10_5	chr14	89055574	89058752	AL162171.3	+	lncRNA	chr14	89029380	89093940	ZC3H14	+	protein_coding	3178	same	5185_ID	chr14	89055575	89058752	3178	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	16
11391	ENST00000617473.1_3	ENST00000640666.1_3	chr20	44063911	44076965	AL031663.3	-	lncRNA	chr20	44044772	44085566	PIGT	+	nonsense_mediated_decay	13054	opposite	4537_ID	chr20	44063912	44076965	13054	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	14	16
11399	ENST00000617758.1_3	ENST00000457928.7_4	chr3	176755192	176765680	TBL1XR1-AS1	+	lncRNA	chr3	176737131	176915270	TBL1XR1	-	protein_coding	10519	opposite	12637_ID	chr3	176755193	176765680	10488	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	16
11426	ENST00000618736.1_1	ENST00000571589.6_3	chr16	14244689	14247092	AC130650.2	+	lncRNA	chr16	14165175	14360630	MRTFB	+	protein_coding	2403	same	4073_ID	chr16	14244690	14247092	2403	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
11460	ENST00000619486.1_1	ENST00000354613.5_3	chr7	73023591	73025832	AC005089.1	-	lncRNA	chr7	73007523	73038870	MLXIPL	-	protein_coding	2241	same	236_ID	chr7	73023592	73025832	2241	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
11516	ENST00000620472.1_1	ENST00000414834.6_1	chr12	32881102	32881958	AC084824.3	-	lncRNA	chr12	32832133	32898584	DNM1L	+	protein_coding	856	opposite	2763_ID	chr12	32881103	32881958	856	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	16
11632	ENST00000622833.4_3	ENST00000535621.6_2	chr16	15131710	15149936	NTAN1	-	protein_coding	chr16	15068868	15233196	PDXDC1	+	protein_coding	18226	opposite	9310_ID	chr16	15131711	15149936	18226	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	16
11740	ENST00000626237.1_1	ENST00000400314.5_5	chr21	47334209	47339397	AJ239328.1	+	lncRNA	chr21	47063607	47362368	PCBP3	+	protein_coding	5188	same	4425_ID	chr21	47334210	47339397	5188	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	16
11781	ENST00000629794.1_1	ENST00000626839.2_4	chr20	62053621	62055908	AL353658.1	+	lncRNA	chr20	62031562	62104030	KCNQ2	-	protein_coding	2287	opposite	5249_ID	chr20	62053622	62055908	2287	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	16
11980	ENST00000642619.1_1	ENST00000644824.1_2	chr7	29231197	29233725	AC004593.1	-	lncRNA	chr7	29161955	29554283	AC004593.2	+	protein_coding	2528	opposite	145_ID	chr7	29231198	29233725	2528	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
12055	ENST00000648317.1_1	ENST00000534300.5_4	chr11	46594497	46609358	AC127035.1	+	lncRNA	chr11	46417963	46615571	AMBRA1	-	protein_coding	14861	opposite	4031_ID	chr11	46594498	46609358	14861	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
12098	ENST00000648756.1_3	ENST00000293968.11_1	chr16	2480702	2487104	AC106820.6	-	lncRNA	chr16	2479394	2508852	CCNF	+	nonsense_mediated_decay	6402	opposite	3656_ID	chr16	2480703	2487104	6402	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	16
12118	ENST00000649093.1_3	ENST00000375315.7_2	chr9	97726650	97727906	AL353768.2	-	lncRNA	chr9	97488885	97849441	AOPEP	+	protein_coding	1256	opposite	5262_ID	chr9	97726651	97727906	1256	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	16
12186	ENST00000650616.2_4	ENST00000336596.7_2	chr3	89332165	89363754	AC109129.1	-	lncRNA	chr3	89156770	89531284	EPHA3	+	protein_coding	31589	opposite	3751_ID	chr3	89332166	89363754	31589	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
12352	ENST00000654383.1_3	ENST00000607359.5_2	chr10	134896983	134901294	ADGRA1-AS1	-	lncRNA	chr10	134884432	134945179	ADGRA1	+	protein_coding	5419	opposite	4353_ID	chr10	134896984	134901294	4311	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	16
12398	ENST00000655377.1_1	ENST00000616923.5_9	chr6	53367915	53372458	AL033397.2	+	lncRNA	chr6	53362181	53413004	GCLC	-	protein_coding	4552	opposite	4576_ID	chr6	53367916	53372458	4543	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	16
12440	ENST00000656182.1_3	ENST00000330198.8_2	chr3	197754826	197762841	AC135893.1	-	lncRNA	chr3	197687070	197770591	LMLN	+	protein_coding	8015	opposite	4144_ID	chr3	197754827	197762841	8015	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	15	16
12447	ENST00000656415.1_3	ENST00000217246.8_3	chr20	14502726	14503960	AL121582.1	-	lncRNA	chr20	13976014	16033842	MACROD2	+	protein_coding	1234	opposite	4738_ID	chr20	14502727	14503960	1234	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	16
12535	ENST00000658176.1_3	ENST00000261488.10_3	chr13	44181448	44203600	AL161714.1	-	lncRNA	chr13	43787653	44361044	ENOX1	-	protein_coding	22152	same	5161_ID	chr13	44181449	44203600	22152	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
12608	ENST00000659348.1_3	ENST00000383788.10_8	chr3	15542945	15545567	AC027129.1	+	lncRNA	chr3	15491639	15563213	COLQ	-	protein_coding	2622	opposite	2193_ID	chr3	15542946	15545567	2622	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
12696	ENST00000661235.1_1	ENST00000490605.3_7	chr2	97578285	97583009	AC092636.1	+	lncRNA	chr2	97541621	97652317	FAM178B	-	protein_coding	4724	opposite	3112_ID	chr2	97578286	97583009	4724	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
12820	ENST00000664024.1_3	ENST00000335866.7_5	chr7	50709421	50711565	AC005153.1	+	lncRNA	chr7	50657759	50861159	GRB10	-	protein_coding	2144	opposite	240_ID	chr7	50709422	50711565	2144	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
12838	ENST00000664409.1_3	ENST00000217246.8_3	chr20	14864895	14910174	MACROD2-AS1	-	lncRNA	chr20	13976014	16033842	MACROD2	+	protein_coding	45279	opposite	7900_ID	chr20	14864896	14910174	45279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
12839	ENST00000664413.1_3	ENST00000295878.8_5	chr3	113705681	113710960	AC128687.3	+	lncRNA	chr3	113682983	113775373	CCDC191	-	protein_coding	5279	opposite	4045_ID	chr3	113705682	113710960	5279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	16
12877	ENST00000665088.1_3	ENST00000270722.10_3	chr1	3284378	3290492	AL354743.1	-	lncRNA	chr1	2985766	3355185	PRDM16	+	protein_coding	6114	opposite	5279_ID	chr1	3284379	3290492	6114	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
12909	ENST00000665783.1_1	ENST00000463477.5_3	chr9	8858126	8864772	PTPRD-AS1	+	lncRNA	chr9	8528151	10612723	PTPRD	-	protein_coding	6646	opposite	9678_ID	chr9	8858127	8864772	6646	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	16
12942	ENST00000666654.1_3	ENST00000636203.1_2	chr1	14665319	14746469	KAZN-AS1	-	lncRNA	chr1	14219286	15444539	KAZN	+	protein_coding	81150	opposite	7395_ID	chr1	14665320	14746469	81150	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
12945	ENST00000666715.1_3	ENST00000636203.1_2	chr1	15100964	15104223	AL031293.1	-	lncRNA	chr1	14219286	15444539	KAZN	+	protein_coding	3259	opposite	4517_ID	chr1	15100965	15104223	3259	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
13034	ENST00000668770.1_3	ENST00000325006.7_2	chr7	129006667	129014327	AC009244.1	-	lncRNA	chr7	128864863	129070052	AHCYL2	+	protein_coding	7660	opposite	929_ID	chr7	129006668	129014327	7660	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
13043	ENST00000668875.1_1	ENST00000646273.1_3	chr12	24376205	24412988	SOX5-AS1	+	lncRNA	chr12	23686720	24715383	SOX5	-	protein_coding	36824	opposite	12496_ID	chr12	24376206	24412988	36783	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	16
13062	ENST00000669140.1_3	ENST00000270722.10_3	chr1	3229615	3239713	AL354743.2	-	lncRNA	chr1	2985766	3355185	PRDM16	+	protein_coding	10098	opposite	5280_ID	chr1	3229616	3239713	10098	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
98710	ENST00000363380.1	ENST00000409947.5_3	chr2	128074448	128074555	RNU6-1147P	+	snRNA	chr2	128056305	128146041	MAP3K2	-	protein_coding	107	opposite	10853_ID	chr2	128074449	128074555	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	16
22251	ENST00000385247.1	ENST00000352896.9_6	chr6	119390211	119390308	MIR548B	-	miRNA	chr6	119280994	119470552	FAM184A	-	protein_coding	97	same	8890_ID	chr6	119390212	119390308	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
28241	ENST00000408539.2	ENST00000297875.7_4	chrX	37883147	37883239	MIR548AJ2	-	miRNA	chrX	37865805	37988069	SYTL5	+	protein_coding	92	opposite	8874_ID	chrX	37883148	37883239	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
46071	ENST00000448344.1	ENST00000673502.1_3	chr1	65532309	65533420	RP4-535B20.1	-	lincRNA	chr1	65312087	65533429	JAK1	-	protein_coding	1111	same	11942_ID	chr1	65532310	65533420	1111	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	16
50841	ENST00000459261.1	ENST00000636680.2_3	chr3	29052732	29052827	AC097361.1	+	miRNA	chr3	28617665	30045525	RBMS3	+	protein_coding	95	same	3305_ID	chr3	29052733	29052827	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
55571	ENST00000487337.2	ENST00000498327.5_3	chr2	219967155	219967437	RN7SL764P	+	misc_RNA	chr2	219940050	220035549	AC068946.1	-	retained_intron	282	opposite	10416_ID	chr2	219967156	219967437	282	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	16
94251	ENST00000582692.2_2	ENST00000409850.5_3	chr7	29161889	29166195	AC005232.1	+	lncRNA	chr7	29035252	29234892	CPVL	-	protein_coding	5899	opposite	258_ID	chr7	29161890	29166195	4306	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	16
95661	ENST00000583498.1	ENST00000398559.7_6	chr3	69098108	69098186	MIR3136	-	miRNA	chr3	69068977	69101484	TMF1	-	protein_coding	78	same	8261_ID	chr3	69098109	69098186	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
124651	ENST00000656674.1_1	ENST00000260364.9_1	chr15	69278133	69291018	AC027088.5	+	lncRNA	chr15	69222863	69355083	NOX5	+	protein_coding	12885	same	2191_ID	chr15	69278134	69291018	12885	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
128821	ENST00000665042.1_4	ENST00000674281.1_1	chr12	65213958	65219735	AC025262.3	-	lncRNA	chr12	65153275	65371289	AC078815.1	+	nonsense_mediated_decay	5777	opposite	2068_ID	chr12	65213959	65219735	5777	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	16
119811	ENST00000642619.1_1	ENST00000409850.5_3	chr7	29231197	29233725	AC004593.1	-	lncRNA	chr7	29035252	29234892	CPVL	-	protein_coding	2528	same	143_ID	chr7	29231198	29233725	2528	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	16
83	ENST00000243045.10_2	ENST00000546837.5_6	chr12	56211824	56215663	ORMDL2	+	protein_coding	chr12	56151058	56221330	AC023055.1	-	protein_coding	3839	opposite	9477_ID	chr12	56211825	56215663	3839	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	15
102	ENST00000248378.6_2	ENST00000550383.1_3	chr17	3572105	3572959	EMC6	+	protein_coding	chr17	3566356	3599488	P2RX5-TAX1BP3	-	nonsense_mediated_decay	857	opposite	6903_ID	chr17	3572106	3572959	854	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	12	15
131	ENST00000255198.3_7	ENST00000646704.1_3	chr5	76367896	76383110	ZBED3	-	protein_coding	chr5	76326726	76447980	AC008581.2	+	nonsense_mediated_decay	15214	opposite	12994_ID	chr5	76367897	76383110	15214	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	15
150	ENST00000258969.4_3	ENST00000300441.9_4	chr17	48541859	48546267	CHAD	-	protein_coding	chr17	48503578	48552198	ACSF2	+	protein_coding	4411	opposite	6635_ID	chr17	48541860	48546267	4408	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	15
168	ENST00000263657.7_2	ENST00000406334.3_3	chr2	68385019	68403370	PNO1	+	protein_coding	chr2	68358369	68488362	AC017083.3	-	nonsense_mediated_decay	18351	opposite	9592_ID	chr2	68385020	68403370	18351	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	15
188	ENST00000267843.9_2	ENST00000299338.11_7	chr15	49715438	49780972	FGF7	+	protein_coding	chr15	49619166	49913015	FAM227B	-	protein_coding	65539	opposite	7025_ID	chr15	49715439	49780972	65534	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	15
249	ENST00000287814.5_4	ENST00000621198.5_6	chr3	12194567	12200412	TIMP4	-	protein_coding	chr3	12045861	12233532	SYN2	+	protein_coding	5845	opposite	12701_ID	chr3	12194568	12200412	5845	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	15
342	ENST00000303596.3_2	ENST00000562787.6_4	chr16	67876222	67878098	THAP11	+	protein_coding	chr16	67862059	67881596	CENPT	-	protein_coding	1876	opposite	12674_ID	chr16	67876223	67878098	1876	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
446	ENST00000317652.1_3	ENST00000614565.5_5	chr20	60292561	60294804	AL162457.1	-	lncRNA	chr20	59827316	60515673	CDH4	+	protein_coding	2243	opposite	5202_ID	chr20	60292562	60294804	2243	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
632	ENST00000340695.2	ENST00000307404.5	chr8	145490548	145492470	SCXA	+	protein_coding	chr8	145486054	145515082	BOP1	-	protein_coding	1922	opposite	12019_ID	chr8	145490549	145492470	1922	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
647	ENST00000342697.5_4	ENST00000396113.5_2	chr8	95938199	95961606	TP53INP1	-	protein_coding	chr8	95908040	96070938	NDUFAF6	+	protein_coding	23407	opposite	12763_ID	chr8	95938200	95961606	23407	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	15
790	ENST00000362220.1	ENST00000420843.7_5	chr11	75046135	75046230	MIR326	-	miRNA	chr11	74971165	75062705	ARRB1	-	protein_coding	95	same	8320_ID	chr11	75046136	75046230	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
796	ENST00000362234.2	ENST00000327946.12_4	chr10	88024450	88024545	MIR346	-	miRNA	chr10	87359308	88126552	GRID1	-	protein_coding	95	same	8334_ID	chr10	88024451	88024545	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
837	ENST00000362449.1	ENST00000457734.7_2	chr3	142392438	142392746	RN7SKP25	+	misc_RNA	chr3	142315234	142432506	PLS1	+	protein_coding	308	same	9855_ID	chr3	142392439	142392746	308	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	15
890	ENST00000362825.1	ENST00000331728.9_4	chr22	31618730	31618839	RNU6-1128P	-	snRNA	chr22	31608283	31676066	LIMK2	+	protein_coding	109	opposite	10844_ID	chr22	31618731	31618839	109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
898	ENST00000362860.1	ENST00000260408.8_4	chr15	58996050	58996353	RN7SKP95	-	misc_RNA	chr15	58881007	59041906	ADAM10	-	protein_coding	303	same	9937_ID	chr15	58996051	58996353	303	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
1045	ENST00000363686.1	ENST00000258187.9_1	chr16	58530811	58530918	RNU6-103P	+	snRNA	chr16	58497568	58547532	NDRG4	+	protein_coding	107	same	10786_ID	chr16	58530812	58530918	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
1112	ENST00000364012.1	ENST00000457928.7_4	chr3	176843804	176843908	RNU6-681P	-	snRNA	chr3	176737131	176915270	TBL1XR1	-	protein_coding	104	same	11430_ID	chr3	176843805	176843908	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
1159	ENST00000364309.1	ENST00000393651.8_5	chr7	104973236	104973343	RNU6-1322P	+	snRNA	chr7	104756820	105029368	SRPK2	-	protein_coding	107	opposite	11006_ID	chr7	104973237	104973343	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
1178	ENST00000364417.1	ENST00000377765.8_2	chr9	37661743	37662046	RN7SKP171	-	misc_RNA	chr9	37650950	37746901	FRMPD1	+	protein_coding	303	opposite	9802_ID	chr9	37661744	37662046	303	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
1215	ENST00000364587.1	ENST00000372858.8_5	chr1	40033045	40033180	SNORA55	-	snoRNA	chr1	40026487	40042462	PABPC4	-	protein_coding	135	same	12184_ID	chr1	40033046	40033180	135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	15
1248	ENST00000364752.1	ENST00000330198.8_2	chr3	197721471	197721580	RNU6-621P	+	snRNA	chr3	197687070	197770591	LMLN	+	protein_coding	109	same	11386_ID	chr3	197721472	197721580	109	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	15
1343	ENST00000365302.1	ENST00000382303.5_1	chr9	558825	558930	RNU6-1327P	+	snRNA	chr9	470290	746105	KANK1	+	protein_coding	105	same	11010_ID	chr9	558826	558930	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	15
1591	ENST00000380008.2_4	ENST00000400314.5_5	chr21	47247874	47257901	PCBP3-AS1	-	lncRNA	chr21	47063607	47362368	PCBP3	+	protein_coding	10027	opposite	9509_ID	chr21	47247875	47257901	10027	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
1704	ENST00000383988.1	ENST00000507897.5_1	chr6	88198162	88198270	RNU6-444P	+	snRNA	chr6	88117729	88205858	AL049697.1	+	nonsense_mediated_decay	108	same	11248_ID	chr6	88198163	88198270	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	15
1798	ENST00000384273.1	ENST00000265382.8_2	chr9	71550788	71550895	RNU6-820P	-	snRNA	chr9	71320155	71624092	PIP5K1B	+	protein_coding	107	opposite	11529_ID	chr9	71550789	71550895	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	15
1848	ENST00000384438.1	ENST00000304381.10_5	chr16	19023478	19023585	RNU6-1340P	+	snRNA	chr16	18995255	19075264	TMC7	+	protein_coding	107	same	11022_ID	chr16	19023479	19023585	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
1865	ENST00000384474.1	ENST00000511166.1_3	chr13	36841304	36841411	RNU6-71P	+	snRNA	chr13	36742930	36871979	CCDC169-SOHLH2	-	protein_coding	107	opposite	11450_ID	chr13	36841305	36841411	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
1867	ENST00000384479.1	ENST00000422945.6_1	chr14	102269563	102269668	RNU6-790P	+	snRNA	chr14	102228134	102394326	PPP2R5C	+	protein_coding	105	same	11503_ID	chr14	102269564	102269668	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
1930	ENST00000384631.1	ENST00000521548.5_3	chr8	28273964	28274068	RNU6-178P	+	snRNA	chr8	28205803	28347773	FBXO16	-	nonsense_mediated_decay	104	opposite	11051_ID	chr8	28273965	28274068	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	15
1993	ENST00000384820.1	ENST00000521006.5_1	chr10	102734741	102734841	MIR608	+	miRNA	chr10	102729279	102745373	SEMA4G	+	nonsense_mediated_decay	100	same	9008_ID	chr10	102734742	102734841	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	15
1998	ENST00000384825.1	ENST00000586622.5_1	chr17	74732531	74732630	MIR636	-	miRNA	chr17	74731946	74774899	MFSD11	+	protein_coding	99	opposite	9043_ID	chr17	74732532	74732630	99	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	15
2017	ENST00000384847.1	ENST00000442466.1_4	chr16	820182	820277	MIR662	+	miRNA	chr16	819427	833370	MSLNL	-	protein_coding	95	opposite	9066_ID	chr16	820183	820277	95	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	14	15
2205	ENST00000385217.1	ENST00000355683.9_6	chr14	31483851	31483948	MIR624	-	miRNA	chr14	31363004	31495607	STRN3	-	protein_coding	97	same	9027_ID	chr14	31483852	31483948	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
2212	ENST00000385229.1	ENST00000565113.5_3	chr15	55665137	55665232	MIR628	-	miRNA	chr15	55647445	55790558	DNAAF4-CCPG1	-	lncRNA	95	same	9031_ID	chr15	55665138	55665232	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	15
2280	ENST00000388995.11_5	ENST00000317977.10_1	chr17	18872101	18908077	FAM83G	-	protein_coding	chr17	18853657	18925908	SLC5A10	+	protein_coding	35976	opposite	6998_ID	chr17	18872102	18908077	35976	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	15
2400	ENST00000391057.1	ENST00000264808.8_5	chr4	121731623	121731724	RNU6-550P	+	snRNA	chr4	121613069	121843881	PRDM5	-	protein_coding	101	opposite	11332_ID	chr4	121731624	121731724	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	15
2446	ENST00000391224.1	ENST00000435680.6_4	chr15	31248450	31248553	RNU6-466P	-	snRNA	chr15	31231143	31283831	MTMR10	-	protein_coding	103	same	11262_ID	chr15	31248451	31248553	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	15
2485	ENST00000394264.7_5	ENST00000265382.8_2	chr9	71394980	71400482	FAM122A	+	protein_coding	chr9	71320155	71624092	PIP5K1B	+	protein_coding	5502	same	6960_ID	chr9	71394981	71400482	5502	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
2528	ENST00000398275.4_1	ENST00000574590.6_6	chr17	44270941	44274087	KANSL1-AS1	+	lncRNA	chr17	44107281	44302755	KANSL1	-	protein_coding	3148	opposite	7393_ID	chr17	44270942	44274087	3146	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
2540	ENST00000399413.3_1	ENST00000647874.1_5	chr17	7982799	7984883	AC129492.1	+	lncRNA	chr17	7975953	7991034	ALOX12B	-	protein_coding	2084	opposite	4047_ID	chr17	7982800	7984883	2084	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	15
2609	ENST00000401335.1	ENST00000274008.5_3	chr4	123928726	123928818	AC109357.1	-	miRNA	chr4	123844232	124240588	SPATA5	+	protein_coding	92	opposite	3753_ID	chr4	123928727	123928818	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	15
2610	ENST00000401338.2	ENST00000374630.8_3	chr1	23075309	23075404	AL611946.1	-	miRNA	chr1	23037331	23247993	EPHB2	+	protein_coding	95	opposite	5847_ID	chr1	23075310	23075404	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
2690	ENST00000408205.1	ENST00000433011.5_1	chrX	100682380	100682483	AL035422.1	-	miRNA	chrX	100673274	100788446	ARMCX4	+	nonsense_mediated_decay	103	opposite	4603_ID	chrX	100682381	100682483	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
2749	ENST00000408360.1	ENST00000265342.12_4	chr5	132763287	132763398	MIR1289-2	-	miRNA	chr5	132532146	132948232	FSTL4	-	protein_coding	111	same	8052_ID	chr5	132763288	132763398	111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
2918	ENST00000408743.1	ENST00000612955.5_3	chr13	29796698	29796778	AL596092.1	+	miRNA	chr13	29394484	30080084	MTUS2	+	protein_coding	80	same	5821_ID	chr13	29796699	29796778	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	15
2995	ENST00000409752.5_3	ENST00000406334.3_3	chr2	68407935	68483369	PPP3R1	-	protein_coding	chr2	68358369	68488362	AC017083.3	-	nonsense_mediated_decay	77381	same	9620_ID	chr2	68407936	68483369	75434	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	15
3044	ENST00000410294.1	ENST00000433239.6_1	chr7	118102552	118102648	AC006926.1	+	miRNA	chr7	117854722	118136129	ANKRD7	+	processed_transcript	96	same	487_ID	chr7	118102553	118102648	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	15
3090	ENST00000410457.1	ENST00000429644.7_4	chr3	81558626	81558815	RNU2-28P	+	snRNA	chr3	81538853	81810796	GBE1	-	protein_coding	189	opposite	10626_ID	chr3	81558627	81558815	189	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	15
3106	ENST00000410528.1	ENST00000397443.7_10	chr20	34231064	34231384	RN7SKP271	+	misc_RNA	chr20	34213965	34252822	CPNE1	-	protein_coding	320	opposite	9871_ID	chr20	34231065	34231384	320	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
3146	ENST00000410718.1	ENST00000354619.10_4	chr1	236431079	236431258	RNU2-70P	+	snRNA	chr1	236378400	236445258	ERO1B	-	protein_coding	179	opposite	10656_ID	chr1	236431080	236431258	179	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
3290	ENST00000411862.1_1	ENST00000487078.5_1	chr2	27283905	27284683	AGBL5-IT1	+	lncRNA	chr2	27274513	27293490	AGBL5	+	nonsense_mediated_decay	778	same	4416_ID	chr2	27283906	27284683	778	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	15
3420	ENST00000414926.1_1	ENST00000420781.5_4	chr9	132695814	132698820	AL158207.2	+	lncRNA	chr9	132649465	132805473	FNBP1	-	protein_coding	3006	opposite	5111_ID	chr9	132695815	132698820	3006	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	15
3594	ENST00000419644.1_3	ENST00000374630.8_3	chr1	23162205	23163342	AL512444.1	-	lncRNA	chr1	23037331	23247993	EPHB2	+	protein_coding	1137	opposite	5685_ID	chr1	23162206	23163342	1137	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
3652	ENST00000421206.1_1	ENST00000392870.3_2	chr10	120968042	120971272	GRK5-IT1	+	lncRNA	chr10	120967082	121219257	GRK5	+	protein_coding	3230	same	7182_ID	chr10	120968043	120971272	3230	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
3724	ENST00000422761.1_3	ENST00000432367.6_5	chr2	71168956	71175740	ATP6V1B1-AS1	-	lncRNA	chr2	71127927	71192503	VAX2	+	nonsense_mediated_decay	6794	opposite	6380_ID	chr2	71168957	71175740	6784	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	15
3990	ENST00000430733.1_3	ENST00000382141.4_1	chr13	24826886	24828577	SPATA13-AS1	-	lncRNA	chr13	24553838	24895169	AL359736.1	+	nonsense_mediated_decay	1691	opposite	12510_ID	chr13	24826887	24828577	1691	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	15
4007	ENST00000431293.2_1	ENST00000263556.3_3	chr10	74831052	74833766	AL731563.2	+	lncRNA	chr10	74766981	74856732	P4HA1	-	protein_coding	2714	opposite	5896_ID	chr10	74831053	74833766	2714	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	15
4080	ENST00000433374.1_1	ENST00000260702.4_4	chr10	100011779	100016332	AL139241.1	+	lncRNA	chr10	100007446	100027951	LOXL4	-	protein_coding	4553	opposite	5022_ID	chr10	100011780	100016332	4553	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	15
4126	ENST00000434779.5_3	ENST00000612955.5_3	chr13	29813515	29824691	MTUS2-AS2	-	lncRNA	chr13	29394484	30080084	MTUS2	+	protein_coding	11176	opposite	9184_ID	chr13	29813516	29824691	11176	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	15
4181	ENST00000436263.1_1	ENST00000626839.2_4	chr20	62079403	62080682	KCNQ2-AS1	+	lncRNA	chr20	62031562	62104030	KCNQ2	-	protein_coding	1279	opposite	7427_ID	chr20	62079404	62080682	1279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
4259	ENST00000438551.1_1	ENST00000374651.8_2	chr1	22843966	22846201	ZBTB40-IT1	+	lncRNA	chr1	22778343	22857650	ZBTB40	+	protein_coding	2235	same	13001_ID	chr1	22843967	22846201	2235	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	15
4296	ENST00000439298.5_1	ENST00000373203.9_4	chr9	130578344	130584799	AL162586.1	+	lncRNA	chr9	130577294	130616937	ENG	-	protein_coding	6455	opposite	5209_ID	chr9	130578345	130584799	6455	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	15
4383	ENST00000441875.1_1	ENST00000338560.12_2	chr17	16330787	16332033	AC093484.1	+	retained_intron	chr17	16318884	16340317	TRPV2	+	protein_coding	1246	same	3207_ID	chr17	16330788	16332033	1246	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	15
4395	ENST00000442150.1_1	ENST00000376406.8_4	chr6	30670843	30680961	MDC1-AS1	+	lncRNA	chr6	30667583	30685058	MDC1	-	protein_coding	10118	opposite	7934_ID	chr6	30670844	30680961	10118	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	15
4410	ENST00000442442.1_1	ENST00000382303.5_1	chr9	487773	495610	AL161725.2	+	lncRNA	chr9	470290	746105	KANK1	+	protein_coding	7837	same	5164_ID	chr9	487774	495610	7837	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
4547	ENST00000446649.1_1	ENST00000291670.9_3	chr21	47571527	47572561	FTCD-AS1	+	lncRNA	chr21	47556175	47575481	FTCD	-	protein_coding	1034	opposite	7089_ID	chr21	47571528	47572561	1034	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	15
4554	ENST00000446838.2_1	ENST00000332142.10_4	chr2	163625445	163654482	KCNH7-AS1	+	lncRNA	chr2	163227916	163695277	KCNH7	-	protein_coding	29037	opposite	7415_ID	chr2	163625446	163654482	29037	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
4582	ENST00000447643.1_3	ENST00000427076.5_3	chr7	44043644	44047465	AC004951.1	-	lncRNA	chr7	43980493	44058748	POLR2J4	-	lncRNA	3821	same	203_ID	chr7	44043645	44047465	3821	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	15
4744	ENST00000452057.1_1	ENST00000281772.14_7	chr2	210895456	210929080	KANSL1L-AS1	+	lncRNA	chr2	210886144	211036133	KANSL1L	-	protein_coding	33785	opposite	7394_ID	chr2	210895457	210929080	33624	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	15
4799	ENST00000453692.1_1	ENST00000368184.8_6	chr1	157661551	157666249	AL356276.1	+	lncRNA	chr1	157646270	157670559	FCRL3	-	protein_coding	4698	opposite	5378_ID	chr1	157661552	157666249	4698	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	15
4809	ENST00000453946.2	ENST00000254835.2	chr9	43102669	43113526	RP11-327I22.4	+	antisense	chr9	43089971	43133544	ANKRD20A3	-	protein_coding	10857	opposite	11890_ID	chr9	43102670	43113526	10857	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	15
4833	ENST00000454521.1_1	ENST00000444124.7_4	chr7	50599456	50611161	DDC-AS1	+	lncRNA	chr7	50526139	50633102	DDC	-	protein_coding	11705	opposite	6777_ID	chr7	50599457	50611161	11705	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	15
4878	ENST00000455929.1_3	ENST00000474957.5_3	chr1	84444800	84449983	TTLL7-IT1	-	lncRNA	chr1	84330710	84464833	TTLL7	-	nonsense_mediated_decay	5183	same	12814_ID	chr1	84444801	84449983	5183	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
4901	ENST00000456447.5_1	ENST00000382199.7_5	chr3	185431039	185447575	IGF2BP2-AS1	+	lncRNA	chr3	185360917	185542830	IGF2BP2	-	protein_coding	17260	opposite	7339_ID	chr3	185431040	185447575	16536	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
5017	ENST00000458862.1	ENST00000646704.1_3	chr5	76376258	76376396	SNORA47	-	snoRNA	chr5	76326726	76447980	AC008581.2	+	nonsense_mediated_decay	138	opposite	12176_ID	chr5	76376259	76376396	138	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	15
5039	ENST00000459053.1	ENST00000296550.12_5	chr4	151130857	151130920	RNU7-194P	+	snRNA	chr4	150999596	151178590	DCLK2	+	protein_coding	63	same	11758_ID	chr4	151130858	151130920	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	15
5040	ENST00000459054.1	ENST00000268251.13_2	chr16	8799312	8799374	RNU7-63P	-	snRNA	chr16	8768473	8878427	ABAT	+	protein_coding	62	opposite	11799_ID	chr16	8799313	8799374	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
5064	ENST00000459197.1	ENST00000327946.12_4	chr10	88062582	88062678	AL732479.1	-	miRNA	chr10	87359308	88126552	GRID1	-	protein_coding	96	same	5908_ID	chr10	88062583	88062678	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
5149	ENST00000460421.2	ENST00000392870.3_2	chr10	120972368	120972656	RN7SL749P	+	misc_RNA	chr10	120967082	121219257	GRK5	+	protein_coding	288	same	10404_ID	chr10	120972369	120972656	288	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
5175	ENST00000462083.3_2	ENST00000287878.9_7	chr7	151503575	151507906	AC093583.1	+	lncRNA	chr7	151253212	151574200	PRKAG2	-	protein_coding	4331	opposite	3222_ID	chr7	151503576	151507906	4331	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
5187	ENST00000462801.2_2	ENST00000467460.6_5	chr3	179615986	179639683	PEX5L-AS2	+	lncRNA	chr3	179512745	179754725	PEX5L	-	protein_coding	23697	opposite	9538_ID	chr3	179615987	179639683	23697	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	15
5234	ENST00000466064.1_1	ENST00000467460.6_5	chr3	179593163	179599397	PEX5L-AS1	+	lncRNA	chr3	179512745	179754725	PEX5L	-	protein_coding	6234	opposite	9537_ID	chr3	179593164	179599397	6234	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	15
5254	ENST00000467650.2	ENST00000314471.10_2	chr19	39859792	39860086	RN7SL566P	+	misc_RNA	chr19	39833107	39875566	SAMD4B	+	protein_coding	294	same	10273_ID	chr19	39859793	39860086	294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	15
5316	ENST00000471305.2	ENST00000339746.9_5	chr6	90187859	90188150	RN7SL11P	+	misc_RNA	chr6	90142870	90343540	ANKRD6	+	protein_coding	291	same	9955_ID	chr6	90187860	90188150	291	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
5319	ENST00000471592.2	ENST00000675518.1_2	chr4	154302878	154303167	RN7SL419P	-	misc_RNA	chr4	154073586	154336107	AC013477.1	+	protein_coding	289	opposite	10170_ID	chr4	154302879	154303167	289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	15
5327	ENST00000472053.2_1	ENST00000647612.1_3	chr6	150173597	150174328	AL355312.3	+	lncRNA	chr6	150139072	150217147	AL355312.5	-	nonsense_mediated_decay	731	opposite	5331_ID	chr6	150173598	150174328	731	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	15
5376	ENST00000475032.2	ENST00000268251.13_2	chr16	8777110	8777406	RN7SL743P	+	misc_RNA	chr16	8768473	8878427	ABAT	+	protein_coding	296	same	10398_ID	chr16	8777111	8777406	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
5402	ENST00000476569.1_1	ENST00000393651.8_5	chr7	104944723	104947089	AC004884.2	+	lncRNA	chr7	104756820	105029368	SRPK2	-	protein_coding	2366	opposite	191_ID	chr7	104944724	104947089	2366	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
5403	ENST00000476596.2	ENST00000285900.10_3	chr5	153134941	153135238	RN7SL177P	+	misc_RNA	chr5	152870229	153193429	GRIA1	+	protein_coding	297	same	9996_ID	chr5	153134942	153135238	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	15
5433	ENST00000478808.2_3	ENST00000392784.6_2	chr12	109490154	109491757	USP30-AS1	-	lncRNA	chr12	109460893	109524182	USP30	+	protein_coding	1603	opposite	12882_ID	chr12	109490155	109491757	1603	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	15
5437	ENST00000479030.1_1	ENST00000316549.11_4	chr3	143061087	143065913	SLC9A9-AS1	+	lncRNA	chr3	142984063	143567310	SLC9A9	-	protein_coding	4826	opposite	12108_ID	chr3	143061088	143065913	4826	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	15
5456	ENST00000480790.2	ENST00000393382.7_3	chr17	46842917	46843209	RN7SL125P	-	misc_RNA	chr17	46839602	46894576	TTLL6	-	protein_coding	292	same	9959_ID	chr17	46842918	46843209	292	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	15
5494	ENST00000483283.1_1	ENST00000397622.7_5	chr7	129813557	129845201	AC087071.2	+	lncRNA	chr7	129804552	129845246	TMEM209	-	protein_coding	31644	opposite	2780_ID	chr7	129813558	129845201	31644	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	15
5527	ENST00000485338.1_3	ENST00000457734.7_2	chr3	142373625	142375587	PLS1-AS1	-	lncRNA	chr3	142315234	142432506	PLS1	+	protein_coding	1962	opposite	9587_ID	chr3	142373626	142375587	1962	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
5605	ENST00000491347.1_3	ENST00000316549.11_4	chr3	143031908	143033271	AC131210.1	-	lncRNA	chr3	142984063	143567310	SLC9A9	-	protein_coding	1363	same	4087_ID	chr3	143031909	143033271	1363	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	15
5659	ENST00000494856.2	ENST00000502613.2_4	chr4	79820008	79820306	RN7SL127P	+	misc_RNA	chr4	79697503	79837526	BMP2K	+	protein_coding	298	same	9962_ID	chr4	79820009	79820306	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	15
5768	ENST00000502570.1_3	ENST00000282020.9_3	chr4	93754835	93759993	AC095059.1	-	lncRNA	chr4	93225116	94695717	GRID2	+	protein_coding	5158	opposite	3265_ID	chr4	93754836	93759993	5158	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
5850	ENST00000505498.1_3	ENST00000282020.9_3	chr4	94239773	94240937	AC110800.1	-	lncRNA	chr4	93225116	94695717	GRID2	+	protein_coding	1164	opposite	3802_ID	chr4	94239774	94240937	1164	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	15
5938	ENST00000507964.1_1	ENST00000265342.12_4	chr5	132723464	132724241	AC010608.1	+	lncRNA	chr5	132532146	132948232	FSTL4	-	protein_coding	777	opposite	1112_ID	chr5	132723465	132724241	777	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	15
5962	ENST00000508950.5_1	ENST00000265342.12_4	chr5	132592183	132611669	AC010307.4	+	lncRNA	chr5	132532146	132948232	FSTL4	-	protein_coding	19486	opposite	1053_ID	chr5	132592184	132611669	19486	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	15
6016	ENST00000510655.1_3	ENST00000509061.5_3	chr4	113567631	113571207	MIR302CHG	-	lncRNA	chr4	113558281	113578742	LARP7	+	protein_coding	3576	opposite	8221_ID	chr4	113567632	113571207	3576	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	15
6035	ENST00000511329.1_3	ENST00000241436.8_1	chr5	74894306	74895205	AC010245.1	-	lncRNA	chr5	74807580	74896969	POLK	+	protein_coding	899	opposite	1038_ID	chr5	74894307	74895205	899	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	15	15
6060	ENST00000511917.1_1	ENST00000641051.1_5	chr4	87040866	87141079	MAPK10-AS1	+	lncRNA	chr4	86935026	87515778	MAPK10	-	protein_coding	102015	opposite	7916_ID	chr4	87040867	87141079	100213	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	15
6092	ENST00000512650.1_1	ENST00000646704.1_3	chr5	76369705	76370345	AC008581.1	+	lncRNA	chr5	76326726	76447980	AC008581.2	+	nonsense_mediated_decay	64196	same	750_ID	chr5	76369706	76370345	640	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	15
6166	ENST00000515122.1_1	ENST00000265342.12_4	chr5	132579642	132584473	AC010307.3	+	lncRNA	chr5	132532146	132948232	FSTL4	-	protein_coding	5018	opposite	1052_ID	chr5	132579643	132584473	4831	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	15
6214	ENST00000515929.1	ENST00000417641.6_1	chr2	58289715	58289800	AC073215.1	-	miRNA	chr2	58134785	58387006	VRK2	+	protein_coding	85	opposite	2512_ID	chr2	58289716	58289800	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	15
6241	ENST00000516012.1	ENST00000270861.10_3	chr4	128813145	128813237	RNU6-583P	+	snRNA	chr4	128802047	128820379	PLK4	+	protein_coding	92	same	11354_ID	chr4	128813146	128813237	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	15
6264	ENST00000516083.1	ENST00000517566.6_3	chr8	107742022	107742084	RNU7-84P	-	snRNA	chr8	107371703	107764910	OXR1	+	protein_coding	62	opposite	11813_ID	chr8	107742023	107742084	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	15
6285	ENST00000516154.1	ENST00000327040.13_5	chr8	18667009	18667136	AC090420.1	-	miRNA	chr8	18384812	18871213	PSD3	-	protein_coding	127	same	2892_ID	chr8	18667010	18667136	127	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	15
6289	ENST00000516161.1	ENST00000651734.1_3	chrY	20995614	20995776	RNU1-41P	-	snRNA	chrY	20934628	21239108	TTTY14	-	lncRNA	162	same	10586_ID	chrY	20995615	20995776	162	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	15
6292	ENST00000516163.1	ENST00000359726.7_3	chr21	27315358	27315460	RNU6-123P	-	snRNA	chr21	27252861	27543446	APP	-	protein_coding	102	same	10938_ID	chr21	27315359	27315460	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	15
6320	ENST00000516237.1	ENST00000274695.8_3	chr6	20993704	20993799	RNU6-150P	-	snRNA	chr6	20534687	21232635	CDKAL1	+	protein_coding	95	opposite	11035_ID	chr6	20993705	20993799	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	15
6344	ENST00000516314.1	ENST00000417961.5_1	chr20	48444528	48444590	RNU7-72P	+	snRNA	chr20	48429249	48508778	SLC9A8	+	protein_coding	62	same	11803_ID	chr20	48444529	48444590	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
6401	ENST00000516483.1	ENST00000327946.12_4	chr10	87409768	87410017	RN7SKP238	-	misc_RNA	chr10	87359308	88126552	GRID1	-	protein_coding	249	same	9845_ID	chr10	87409769	87410017	249	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	15
6420	ENST00000516538.1	ENST00000399910.5_4	chr14	23728668	23728775	RNU6-1046P	-	snRNA	chr14	23654524	23742614	RNF212B	+	protein_coding	107	opposite	10791_ID	chr14	23728669	23728775	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	15
6488	ENST00000516740.1	ENST00000397443.7_10	chr20	34235249	34235352	RNU6-759P	-	snRNA	chr20	34213965	34252822	CPNE1	-	protein_coding	103	same	11479_ID	chr20	34235250	34235352	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
6534	ENST00000516886.1	ENST00000382141.4_1	chr13	24736554	24736643	MIR2276	+	miRNA	chr13	24553838	24895169	AL359736.1	+	nonsense_mediated_decay	89	same	8195_ID	chr13	24736555	24736643	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
6536	ENST00000516889.1	ENST00000574590.6_6	chr17	44204761	44204817	RNU7-101P	+	snRNA	chr17	44107281	44302755	KANSL1	-	protein_coding	56	opposite	11691_ID	chr17	44204762	44204817	56	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
6538	ENST00000516891.1	ENST00000283629.8_4	chr3	33455641	33455703	RNU7-110P	+	snRNA	chr3	33429827	33481897	UBP1	-	protein_coding	62	opposite	11699_ID	chr3	33455642	33455703	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
6720	ENST00000517506.2_3	ENST00000336148.10_5	chr8	95390604	95449180	FSBP	-	nonsense_mediated_decay	chr8	95384187	95487343	RAD54B	-	protein_coding	58576	same	7085_ID	chr8	95390605	95449180	58576	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	15
6736	ENST00000518063.5_3	ENST00000637795.2_6	chr8	1513674	1568701	DLGAP2-AS1	-	lncRNA	chr8	687627	1656642	DLGAP2	+	protein_coding	56909	opposite	6818_ID	chr8	1513675	1568701	55027	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	15
6750	ENST00000518425.1_1	ENST00000313708.11_4	chr5	158412813	158414207	AC136424.1	+	lncRNA	chr5	158122927	158526924	EBF1	-	protein_coding	1394	opposite	4151_ID	chr5	158412814	158414207	1394	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	15
6763	ENST00000518591.1_3	ENST00000517566.6_3	chr8	107532701	107669776	AC090579.1	-	lncRNA	chr8	107371703	107764910	OXR1	+	protein_coding	137075	opposite	2913_ID	chr8	107532702	107669776	137075	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
6782	ENST00000519364.5_3	ENST00000520720.1_1	chr8	24347824	24372341	AC024958.1	-	lncRNA	chr8	24333416	24384483	ADAM7	+	protein_coding	24545	opposite	2040_ID	chr8	24347825	24372341	24517	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	15
6822	ENST00000520778.1_3	ENST00000262207.9_2	chr8	75938662	75941695	AC100782.1	-	lncRNA	chr8	75896739	75946793	CRISPLD1	+	protein_coding	3033	opposite	3412_ID	chr8	75938663	75941695	3033	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	15
6879	ENST00000522582.1_1	ENST00000313708.11_4	chr5	158410013	158411797	AC136424.2	+	lncRNA	chr5	158122927	158526924	EBF1	-	protein_coding	1784	opposite	4152_ID	chr5	158410014	158411797	1784	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	15
6880	ENST00000522589.1_3	ENST00000521548.5_3	chr8	28273040	28277572	AC025871.2	-	lncRNA	chr8	28205803	28347773	FBXO16	-	nonsense_mediated_decay	4532	same	2110_ID	chr8	28273041	28277572	4532	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	15
6885	ENST00000522670.1_1	ENST00000327040.13_5	chr8	18846788	18858462	AC009884.1	+	lncRNA	chr8	18384812	18871213	PSD3	-	protein_coding	11674	opposite	1002_ID	chr8	18846789	18858462	11674	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
6933	ENST00000524252.1_1	ENST00000327040.13_5	chr8	18578414	18591915	AC100800.1	+	lncRNA	chr8	18384812	18871213	PSD3	-	protein_coding	13501	opposite	3420_ID	chr8	18578415	18591915	13501	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	15
7039	ENST00000528233.1_3	ENST00000308488.10_4	chr11	77449724	77450613	RSF1-IT1	-	lncRNA	chr11	77371040	77532063	RSF1	-	protein_coding	889	same	11971_ID	chr11	77449725	77450613	889	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	15
7073	ENST00000529656.1_3	ENST00000308488.10_4	chr11	77428756	77429456	RSF1-IT2	-	lncRNA	chr11	77371040	77532063	RSF1	-	protein_coding	700	same	11972_ID	chr11	77428757	77429456	700	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	15
7127	ENST00000531305.1_3	ENST00000616540.5_5	chr11	111687937	111699936	ALG9-IT1	-	lncRNA	chr11	111652918	111742305	ALG9	-	protein_coding	11999	same	5931_ID	chr11	111687938	111699936	11999	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	15
7144	ENST00000531763.1_1	ENST00000396356.7_4	chr11	16044735	16053061	AC103794.1	+	lncRNA	chr11	15987994	16497935	SOX6	-	protein_coding	101207	opposite	3469_ID	chr11	16044736	16053061	8326	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	15
7203	ENST00000533978.1_1	ENST00000524300.6_5	chr8	74582675	74640293	AC027018.1	+	lncRNA	chr8	74332603	74659075	STAU2	-	protein_coding	62457	opposite	2187_ID	chr8	74582676	74640293	57618	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	15
7235	ENST00000535922.1_3	ENST00000312629.10_2	chr11	67198837	67202870	RPS6KB2-AS1	-	lncRNA	chr11	67195964	67202872	RPS6KB2	+	protein_coding	4033	opposite	11963_ID	chr11	67198838	67202870	4033	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	15
7348	ENST00000543486.1_3	ENST00000200135.8_4	chr11	113641114	113642413	AP003170.4	-	lncRNA	chr11	113603908	113644414	ZW10	-	protein_coding	1299	same	6245_ID	chr11	113641115	113642413	1299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
7358	ENST00000543848.1_1	ENST00000543163.5_3	chr12	122294164	122294965	AC079360.1	+	lncRNA	chr12	122277435	122301502	HPD	-	protein_coding	801	opposite	2655_ID	chr12	122294165	122294965	801	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	15
7625	ENST00000554859.1_3	ENST00000422945.6_1	chr14	102262891	102276658	AL137779.2	-	lncRNA	chr14	102228134	102394326	PPP2R5C	+	protein_coding	13767	opposite	4954_ID	chr14	102262892	102276658	13767	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
7654	ENST00000555875.1_3	ENST00000261835.8_2	chr14	100157781	100159985	AL160313.2	-	lncRNA	chr14	100150634	100193638	CYP46A1	+	protein_coding	2204	opposite	5140_ID	chr14	100157782	100159985	2204	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	15
7657	ENST00000555924.1_3	ENST00000556422.5_1	chr14	57099966	57115376	AL161757.2	-	lncRNA	chr14	57046337	57116233	TMEM260	+	nonsense_mediated_decay	15415	opposite	5170_ID	chr14	57099967	57115376	15410	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	13	15
7667	ENST00000556205.1_3	ENST00000422945.6_1	chr14	102299771	102305868	AL137779.1	-	lncRNA	chr14	102228134	102394326	PPP2R5C	+	protein_coding	6097	opposite	4953_ID	chr14	102299772	102305868	6097	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
7747	ENST00000558317.1_1	ENST00000261854.10_5	chr15	51038905	51042026	AC012100.2	+	lncRNA	chr15	50994462	51057903	SPPL2A	-	protein_coding	3121	opposite	1332_ID	chr15	51038906	51042026	3121	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	15
7812	ENST00000559839.1_3	ENST00000268184.11_3	chr15	91147456	91157790	AC103739.2	-	lncRNA	chr15	91073154	91188577	CRTC3	+	protein_coding	10334	opposite	3464_ID	chr15	91147457	91157790	10334	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	15
7888	ENST00000561653.1_1	ENST00000293968.11_1	chr16	2502581	2502978	AC106820.3	-	lncRNA	chr16	2479394	2508852	CCNF	+	nonsense_mediated_decay	397	opposite	3654_ID	chr16	2502582	2502978	397	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	15
7952	ENST00000562866.1_1	ENST00000389386.8_5	chr16	89778263	89784573	VPS9D1-AS1	+	lncRNA	chr16	89773541	89787306	VPS9D1	-	protein_coding	6310	opposite	12894_ID	chr16	89778264	89784573	6310	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	15
8002	ENST00000563704.1_1	ENST00000444310.4_1	chr16	4610001	4611663	AC023830.2	-	lncRNA	chr16	4606490	4650715	C16orf96	+	protein_coding	1662	opposite	1978_ID	chr16	4610002	4611663	1662	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
8049	ENST00000564743.1_3	ENST00000254108.12_4	chr16	31193831	31194606	AC009088.2	-	lncRNA	chr16	31191459	31202926	FUS	+	protein_coding	775	opposite	859_ID	chr16	31193832	31194606	775	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	15
8101	ENST00000565823.1_1	ENST00000379516.7_2	chr5	122168050	122170228	AC008669.1	+	lncRNA	chr5	122110774	122170238	SNX2	+	protein_coding	2178	same	769_ID	chr5	122168051	122170228	2178	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	15	15
8186	ENST00000567456.1_1	ENST00000267890.11_7	chr15	43031315	43034395	AC090510.1	+	lncRNA	chr15	43030927	43212976	TTBK2	-	protein_coding	4085	opposite	2897_ID	chr15	43031316	43034395	3080	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	15	15
8220	ENST00000568302.5_3	ENST00000563635.5_1	chr13	76178835	76210130	LMO7-AS1	-	lncRNA	chr13	76123908	76381256	AL137782.1	+	lncRNA	31295	opposite	7837_ID	chr13	76178836	76210130	31295	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	8	15
8276	ENST00000569678.1_3	ENST00000415496.5_1	chr16	4684329	4690624	AC023830.1	-	lncRNA	chr16	4674824	4740975	MGRN1	+	protein_coding	6295	opposite	1977_ID	chr16	4684330	4690624	6295	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
8304	ENST00000570454.1_1	ENST00000574590.6_6	chr17	44112678	44113136	CR936218.1	+	lncRNA	chr17	44107281	44302755	KANSL1	-	protein_coding	458	opposite	6709_ID	chr17	44112679	44113136	458	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	15
8528	ENST00000577658.1	ENST00000253458.12_3	chr16	85692983	85693279	RN7SL381P	+	misc_RNA	chr16	85646927	85709806	GSE1	+	protein_coding	296	same	10144_ID	chr16	85692984	85693279	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	15
8531	ENST00000577677.1	ENST00000371514.8_3	chr1	53405985	53406085	MIR1273G	+	miRNA	chr1	53392947	53517370	SCP2	+	protein_coding	100	same	8034_ID	chr1	53405986	53406085	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
8573	ENST00000577846.1_1	ENST00000540801.6_4	chr17	28088120	28114854	AC023389.1	+	lncRNA	chr17	27952955	28257246	SSH2	-	protein_coding	26734	opposite	1946_ID	chr17	28088121	28114854	26734	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
8599	ENST00000577987.1	ENST00000245680.7_4	chr2	114478866	114478945	MIR4782	-	miRNA	chr2	114464285	114514219	SLC35F5	-	protein_coding	79	same	8769_ID	chr2	114478867	114478945	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	15
8654	ENST00000578371.1	ENST00000382303.5_1	chr9	507257	507553	RN7SL412P	-	misc_RNA	chr9	470290	746105	KANK1	+	protein_coding	296	opposite	10165_ID	chr9	507258	507553	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
8712	ENST00000578722.1	ENST00000290341.8_2	chr17	47126901	47126986	AC105030.1	+	miRNA	chr17	47074746	47133507	IGF2BP1	+	protein_coding	85	same	3589_ID	chr17	47126902	47126986	85	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	15	15
8733	ENST00000578844.1	ENST00000371514.8_3	chr1	53400601	53400689	MIR5095	+	miRNA	chr1	53392947	53517370	SCP2	+	protein_coding	88	same	8838_ID	chr1	53400602	53400689	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
8738	ENST00000578869.1	ENST00000534313.6_2	chr11	65416662	65416724	MIR4489	+	miRNA	chr11	65405571	65418383	SIPA1	+	protein_coding	62	same	8573_ID	chr11	65416663	65416724	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	15
8752	ENST00000578957.1	ENST00000548058.6_4	chr12	81552166	81552240	MIR4699	+	miRNA	chr12	81471857	81654989	ACSS3	+	protein_coding	74	same	8686_ID	chr12	81552167	81552240	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	15
8837	ENST00000579485.1	ENST00000621161.5_3	chr17	29861900	29861989	MIR4724	+	miRNA	chr17	29718692	29865230	RAB11FIP4	+	protein_coding	89	same	8713_ID	chr17	29861901	29861989	89	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	15	15
8926	ENST00000579959.1	ENST00000415496.5_1	chr16	4683595	4683882	RN7SL850P	-	misc_RNA	chr16	4674824	4740975	MGRN1	+	protein_coding	287	opposite	10479_ID	chr16	4683596	4683882	287	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
8962	ENST00000580207.1	ENST00000382199.7_5	chr3	185485634	185485692	MIR548AQ	-	miRNA	chr3	185360917	185542830	IGF2BP2	-	protein_coding	58	same	8881_ID	chr3	185485635	185485692	58	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
9030	ENST00000580581.1	ENST00000371514.8_3	chr1	53394345	53394444	MIR1273F	+	miRNA	chr1	53392947	53517370	SCP2	+	protein_coding	99	same	8033_ID	chr1	53394346	53394444	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
9038	ENST00000580598.1	ENST00000392870.3_2	chr10	121137483	121137555	MIR4681	+	miRNA	chr10	120967082	121219257	GRK5	+	protein_coding	72	same	8668_ID	chr10	121137484	121137555	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
9076	ENST00000580782.1_1	ENST00000332830.9_5	chr17	27253292	27271767	AC024267.4	+	lncRNA	chr17	27232267	27278536	PHF12	-	protein_coding	18475	opposite	2006_ID	chr17	27253293	27271767	18475	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	15
9145	ENST00000581130.1	ENST00000676785.1_1	chr17	62496890	62496957	MIR3064	-	miRNA	chr17	62494375	62503830	DDX5	-	protein_coding	67	same	8224_ID	chr17	62496891	62496957	67	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	15
9218	ENST00000581646.1	ENST00000374630.8_3	chr1	23046009	23046091	MIR4684	+	miRNA	chr1	23037331	23247993	EPHB2	+	protein_coding	82	same	8671_ID	chr1	23046010	23046091	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
9385	ENST00000582533.1	ENST00000292616.10_2	chr7	102106188	102106273	MIR5090	+	miRNA	chr7	102105430	102113615	LRWD1	+	protein_coding	85	same	8832_ID	chr7	102106189	102106273	85	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	15
9424	ENST00000582732.1	ENST00000375460.3_2	chr1	17604383	17604470	MIR3972	+	miRNA	chr1	17575592	17610728	PADI3	+	protein_coding	87	same	8445_ID	chr1	17604384	17604470	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	15
9431	ENST00000582779.1	ENST00000611217.5_3	chr15	22049273	22049348	MIR3118-6	+	miRNA	chr15	22048289	22083259	POTEB3	-	protein_coding	75	opposite	8243_ID	chr15	22049274	22049348	75	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	15	15
9520	ENST00000583251.1	ENST00000281772.14_7	chr2	211036019	211036115	AC006994.3	-	miRNA	chr2	210886144	211036133	KANSL1L	-	protein_coding	96	same	492_ID	chr2	211036020	211036115	96	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	15
9601	ENST00000583713.1	ENST00000502613.2_4	chr4	79741905	79741975	MIR5096	+	miRNA	chr4	79697503	79837526	BMP2K	+	protein_coding	70	same	8839_ID	chr4	79741906	79741975	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
9625	ENST00000583863.1	ENST00000660573.1_1	chr17	20336518	20337598	RP11-434D2.2	+	lincRNA	chr17	20319922	20350537	AC015818.9	+	lncRNA	1080	same	11910_ID	chr17	20336519	20337598	1080	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	15
9639	ENST00000583943.1	ENST00000371477.4_2	chr6	44403377	44403459	MIR4642	+	miRNA	chr6	44355442	44418162	CDC5L	+	protein_coding	82	same	8628_ID	chr6	44403378	44403459	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	15
9648	ENST00000583987.1	ENST00000621198.5_6	chr3	12112537	12112621	AC026166.1	+	miRNA	chr3	12045861	12233532	SYN2	+	protein_coding	84	same	2120_ID	chr3	12112538	12112621	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	15
9697	ENST00000584258.1_1	ENST00000540801.6_4	chr17	28190419	28193110	AC104982.2	+	lncRNA	chr17	27952955	28257246	SSH2	-	protein_coding	2691	opposite	3577_ID	chr17	28190420	28193110	2691	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
9752	ENST00000584545.1	ENST00000651847.1_3	chr5	125532527	125532608	AC010235.1	+	miRNA	chr5	124735787	125704447	AC116362.1	-	lncRNA	81	opposite	1037_ID	chr5	125532528	125532608	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
9826	ENST00000585001.1	ENST00000252996.8_3	chr20	60639857	60639941	hsa-mir-3195	+	miRNA	chr20	60549853	60640866	TAF4	-	protein_coding	84	opposite	7294_ID	chr20	60639858	60639941	84	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	15
10045	ENST00000590159.1_3	ENST00000301280.10_2	chr19	4429685	4430931	AC011498.3	-	lncRNA	chr19	4402636	4443394	CHAF1A	+	protein_coding	1246	opposite	1255_ID	chr19	4429686	4430931	1246	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	15
10248	ENST00000596807.1_3	ENST00000377670.9_2	chr19	46823453	46843261	AC007193.2	-	lncRNA	chr19	46800298	46846690	HIF3A	+	protein_coding	19808	opposite	521_ID	chr19	46823454	46843261	19808	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	15
10257	ENST00000597002.1	ENST00000338779.11_5	chr16	70695569	70699739	FLJ00418	+	protein_coding	chr16	70695106	70719956	MTSS2	-	protein_coding	4170	opposite	7038_ID	chr16	70695570	70699739	4170	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	12	15
10595	ENST00000604464.1_1	ENST00000541687.5_4	chr2	75924708	75925122	AC005034.2	+	lncRNA	chr2	75889833	75938111	GCFC2	-	protein_coding	414	opposite	218_ID	chr2	75924709	75925122	414	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	15
10679	ENST00000606186.1_1	ENST00000375849.5_1	chr1	15892105	15892451	AL121992.3	-	lncRNA	chr1	15853307	15902587	DNAJC16	+	protein_coding	346	opposite	4792_ID	chr1	15892106	15892451	346	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	15
10744	ENST00000606809.1_1	ENST00000236495.9_3	chr1	48693559	48695233	AL109659.2	-	lncRNA	chr1	48688358	48714316	SLC5A9	+	protein_coding	1674	opposite	4700_ID	chr1	48693560	48695233	1674	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	15
10794	ENST00000607296.1_1	ENST00000644912.1_3	chr5	74659584	74660067	AC008897.3	+	lncRNA	chr5	74652176	74807111	CERT1	-	protein_coding	483	opposite	828_ID	chr5	74659585	74660067	483	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	15	15
10838	ENST00000607659.1_1	ENST00000487078.5_1	chr2	27285295	27285775	AC013403.2	-	lncRNA	chr2	27274513	27293490	AGBL5	+	nonsense_mediated_decay	480	opposite	1440_ID	chr2	27285296	27285775	480	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	15
10840	ENST00000607666.1	ENST00000328405.7_2	chr3	19356339	19356423	MIR4791	-	miRNA	chr3	19190001	19577134	KCNH8	+	protein_coding	84	opposite	8776_ID	chr3	19356340	19356423	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
10846	ENST00000607703.1_3	ENST00000606788.5_1	chr20	44521332	44522058	AL008726.1	-	lncRNA	chr20	44518782	44527459	CTSA	+	nonsense_mediated_decay	726	opposite	4431_ID	chr20	44521333	44522058	726	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	15
10887	ENST00000608069.1_2	ENST00000406334.3_3	chr2	68480001	68480980	AC017083.1	+	lncRNA	chr2	68358369	68488362	AC017083.3	-	nonsense_mediated_decay	23923	opposite	1606_ID	chr2	68480002	68480980	979	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	15
10889	ENST00000608095.1_2	ENST00000281772.14_7	chr2	210893140	210893880	AC007038.1	+	lncRNA	chr2	210886144	211036133	KANSL1L	-	protein_coding	740	opposite	500_ID	chr2	210893141	210893880	740	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	15
10948	ENST00000608799.1_1	ENST00000395270.5_1	chr7	72394955	72395663	AC211476.2	-	lncRNA	chr7	72349935	72421979	POM121	+	protein_coding	708	opposite	4248_ID	chr7	72394956	72395663	708	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	15
11169	ENST00000612390.4_1	ENST00000326665.10_5	chr1	75043113	75091782	ERICH3-AS1	+	lncRNA	chr1	75033806	75139476	ERICH3	-	protein_coding	48669	opposite	6926_ID	chr1	75043114	75091782	48669	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	15
11246	ENST00000613990.1_3	ENST00000547889.6_3	chr14	19563121	19566680	AL929601.3	-	lncRNA	chr14	19553364	19589682	POTEM	+	protein_coding	3559	opposite	5923_ID	chr14	19563122	19566680	3559	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	15
11251	ENST00000614098.1_1	ENST00000321919.14_5	chr16	4889244	4890335	AC020663.3	-	lncRNA	chr16	4853203	4897289	GLYR1	-	protein_coding	1091	same	1728_ID	chr16	4889245	4890335	1091	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
11273	ENST00000614747.1_1	ENST00000497497.1_1	chr10	119026626	119028179	AL391988.1	-	lncRNA	chr10	119000603	119038941	SLC18A2	+	retained_intron	1553	opposite	5596_ID	chr10	119026627	119028179	1553	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	15
11383	ENST00000617215.1_1	ENST00000614565.5_5	chr20	59944934	59945911	BX640515.1	+	lncRNA	chr20	59827316	60515673	CDH4	+	protein_coding	977	same	6458_ID	chr20	59944935	59945911	977	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
11394	ENST00000617574.1_1	ENST00000426654.6_2	chr16	69666043	69666474	AC009032.1	+	lncRNA	chr16	69598996	69738553	NFAT5	+	nonsense_mediated_decay	431	same	845_ID	chr16	69666044	69666474	431	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
11403	ENST00000617854.1_1	ENST00000400314.5_5	chr21	47179717	47183672	AL133492.1	-	lncRNA	chr21	47063607	47362368	PCBP3	+	protein_coding	3955	opposite	4865_ID	chr21	47179718	47183672	3955	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
11429	ENST00000618749.1_1	ENST00000400314.5_5	chr21	47290767	47293259	AJ011931.1	+	lncRNA	chr21	47063607	47362368	PCBP3	+	protein_coding	2492	same	4422_ID	chr21	47290768	47293259	2492	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
11433	ENST00000618824.1_3	ENST00000319580.13_6	chr15	65235435	65235869	AC103691.2	-	lncRNA	chr15	65204100	65251033	ANKDD1A	+	protein_coding	434	opposite	3456_ID	chr15	65235436	65235869	434	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	15
11454	ENST00000619319.1_2	ENST00000266070.8_4	chr20	61559972	61560649	AL117379.1	-	lncRNA	chr20	61509089	61569304	DIDO1	-	protein_coding	677	same	4731_ID	chr20	61559973	61560649	677	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
11508	ENST00000620218.1_3	ENST00000615182.5_2	chr17	35768022	35768681	AC243654.1	-	lncRNA	chr17	35766976	35839830	TADA2A	+	protein_coding	659	opposite	4279_ID	chr17	35768023	35768681	659	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
11547	ENST00000621223.1_1	ENST00000676445.1_1	chr18	25726196	25726667	AC006249.1	-	lncRNA	chr18	25531618	25757910	CDH2	-	protein_coding	471	same	445_ID	chr18	25726197	25726667	471	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
11570	ENST00000621587.1_4	ENST00000611257.4_3	chr17	34493119	34503952	TBC1D3E	-	protein_coding	chr17	34493060	34503955	TBC1D3B	-	protein_coding	10833	same	12634_ID	chr17	34493120	34503952	10833	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	15
11731	ENST00000625697.2_5	ENST00000392870.3_2	chr10	121089744	121095469	AL583824.1	-	lncRNA	chr10	120967082	121219257	GRK5	+	protein_coding	5950	opposite	5722_ID	chr10	121089745	121095469	5725	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
11765	ENST00000628498.1_6	ENST00000354475.5_4	chr7	134884359	134894589	AC009542.1	+	lncRNA	chr7	134868590	134896278	WDR91	-	protein_coding	11437	opposite	970_ID	chr7	134884360	134894589	10230	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	15
11945	ENST00000641568.1_1	ENST00000637084.1_3	chr11	68922945	68927220	SMIM38	+	protein_coding	chr11	68840382	68929908	AP003071.5	+	nonsense_mediated_decay	4275	same	12134_ID	chr11	68922946	68927220	4275	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	15	15
12087	ENST00000648646.1_1	ENST00000416984.6_3	chr8	28656780	28659602	INTS9-AS1	+	lncRNA	chr8	28625177	28747759	INTS9	-	protein_coding	3944	opposite	7362_ID	chr8	28656781	28659602	2822	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	15
12194	ENST00000650768.1_3	ENST00000614565.5_5	chr20	59842580	59846883	AL365229.1	-	lncRNA	chr20	59827316	60515673	CDH4	+	protein_coding	4303	opposite	5534_ID	chr20	59842581	59846883	4303	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
12261	ENST00000652259.1_3	ENST00000452392.2_3	chr6	32789609	32806516	TAP2	-	protein_coding	chr6	32781543	32806599	AL669918.1	-	protein_coding	16938	same	12597_ID	chr6	32789610	32806516	16907	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	15
12278	ENST00000652520.1_2	ENST00000427076.5_3	chr7	44037495	44048457	SPDYE1	+	protein_coding	chr7	43980493	44058748	POLR2J4	-	lncRNA	12226	opposite	12517_ID	chr7	44037496	44048457	10962	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	15
12291	ENST00000652719.1_3	ENST00000264279.10_2	chr2	203166844	203168337	AC064836.3	-	lncRNA	chr2	203130485	203168384	NOP58	+	protein_coding	1493	opposite	2361_ID	chr2	203166845	203168337	1493	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	14	15
12340	ENST00000654035.1_3	ENST00000382303.5_1	chr9	547155	549967	AL392089.1	+	lncRNA	chr9	470290	746105	KANK1	+	protein_coding	2833	same	5602_ID	chr9	547156	549967	2812	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	15
12378	ENST00000655064.1_3	ENST00000396113.5_2	chr8	96051844	96054437	AC068189.2	-	lncRNA	chr8	95908040	96070938	NDUFAF6	+	protein_coding	2593	opposite	2394_ID	chr8	96051845	96054437	2593	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	15
12557	ENST00000658513.1_3	ENST00000400314.5_5	chr21	47281743	47308552	AJ011931.2	-	lncRNA	chr21	47063607	47362368	PCBP3	+	protein_coding	26809	opposite	4424_ID	chr21	47281744	47308552	26809	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
12623	ENST00000659676.1_3	ENST00000677382.1_1	chr14	67750465	67760790	AL135978.1	-	lncRNA	chr14	67707429	67802515	MPP5	+	protein_coding	10325	opposite	4883_ID	chr14	67750466	67760790	10325	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	15
12703	ENST00000661436.1_3	ENST00000417641.6_1	chr2	58267345	58273835	AC068193.1	-	lncRNA	chr2	58134785	58387006	VRK2	+	protein_coding	6490	opposite	2395_ID	chr2	58267346	58273835	6490	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
12734	ENST00000662116.1_3	ENST00000614565.5_5	chr20	60008038	60012686	AL160412.1	-	lncRNA	chr20	59827316	60515673	CDH4	+	protein_coding	4763	opposite	5145_ID	chr20	60008039	60012686	4648	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
12810	ENST00000663782.1_1	ENST00000496455.7_2	chr3	155604403	155608518	AC104472.5	+	lncRNA	chr3	155588438	155661809	GMPS	+	protein_coding	4115	same	3544_ID	chr3	155604404	155608518	4115	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
12828	ENST00000664121.1_1	ENST00000382254.6_5	chr5	22212584	22213870	AC138854.1	+	lncRNA	chr5	21750781	22853453	CDH12	-	protein_coding	1286	opposite	4193_ID	chr5	22212585	22213870	1286	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	15
12919	ENST00000666189.1_3	ENST00000521548.5_3	chr8	28272015	28274110	AC025871.3	-	lncRNA	chr8	28205803	28347773	FBXO16	-	nonsense_mediated_decay	2095	same	2111_ID	chr8	28272016	28274110	2095	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	15
12920	ENST00000666257.1_4	ENST00000637215.1_2	chr10	10959842	10994116	LINC00710	-	lncRNA	chr10	10840359	11373149	CELF2	+	protein_coding	34369	opposite	7575_ID	chr10	10959843	10994116	34274	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	15
12938	ENST00000666538.1_3	ENST00000342056.6_3	chr6	73841797	73851839	KCNQ5-AS1	-	lncRNA	chr6	73331519	73908571	KCNQ5	+	protein_coding	12869	opposite	7428_ID	chr6	73841798	73851839	10042	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	15
12963	ENST00000667035.1_3	ENST00000297161.6_2	chr7	34164559	34167738	AC007350.1	-	lncRNA	chr7	33944522	34195484	BMPER	+	protein_coding	3179	opposite	550_ID	chr7	34164560	34167738	3179	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	15
12983	ENST00000667560.1_1	ENST00000651847.1_3	chr5	125515257	125529551	LINC02039	+	lncRNA	chr5	124735787	125704447	AC116362.1	-	lncRNA	14294	opposite	7717_ID	chr5	125515258	125529551	14294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	15
12985	ENST00000667606.1_1	ENST00000359726.7_3	chr21	27313916	27324928	AP001442.1	+	lncRNA	chr21	27252861	27543446	APP	-	protein_coding	23863	opposite	6134_ID	chr21	27313917	27324928	11012	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	15
13004	ENST00000667923.1_1	ENST00000467460.6_5	chr3	179689281	179734871	AC092939.1	+	lncRNA	chr3	179512745	179754725	PEX5L	-	protein_coding	45590	opposite	3173_ID	chr3	179689282	179734871	45590	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	15
236	ENST00000218388.9_2	ENST00000638776.2_4	chrX	47441834	47446188	TIMP1	+	protein_coding	chrX	47434526	47488141	Z84466.1	-	retained_intron	4382	opposite	12698_ID	chrX	47441835	47446188	4354	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	15
13621	ENST00000365389.1	ENST00000639171.1_1	chr1	100466192	100466295	RNU6-1318P	-	snRNA	chr1	100435594	100548848	AC118553.2	+	nonsense_mediated_decay	103	opposite	11004_ID	chr1	100466193	100466295	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
17041	ENST00000383985.1	ENST00000326840.11_5	chr3	98523821	98523928	RNU6-26P	-	snRNA	chr3	98514784	98620539	DCBLD2	-	protein_coding	107	same	11117_ID	chr3	98523822	98523928	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	15
23851	ENST00000390946.1	ENST00000639171.1_1	chr1	100444494	100444601	RNU6-750P	+	snRNA	chr1	100435594	100548848	AC118553.2	+	nonsense_mediated_decay	107	same	11475_ID	chr1	100444495	100444601	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
29921	ENST00000409672.5_6	ENST00000651013.1_1	chr2	167051694	167232503	SCN9A	-	protein_coding	chr2	167005690	167247281	SCN1A-AS1	+	lncRNA	180817	opposite	12012_ID	chr2	167051695	167232503	180809	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	15
31831	ENST00000410926.1	ENST00000540801.6_4	chr17	27968628	27968720	RNU6-920P	-	snRNA	chr17	27952955	28257246	SSH2	-	protein_coding	92	same	11610_ID	chr17	27968629	27968720	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	15
37811	ENST00000424291.5_2	ENST00000413114.6_3	chr22	34121012	34146830	LARGE-AS1	+	lncRNA	chr22	33669062	34318829	LARGE1	-	protein_coding	25838	opposite	7509_ID	chr22	34121013	34146830	25818	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
39011	ENST00000428344.2_4	ENST00000610442.1_1	chr2	24388752	24397689	AC008073.2	-	lncRNA	chr2	24347235	24413305	AC008073.3	+	nonsense_mediated_decay	9122	opposite	691_ID	chr2	24388753	24397689	8937	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	15
43251	ENST00000439928.2_1	ENST00000424834.6_3	chr13	24553948	24609166	AL445985.1	+	lncRNA	chr13	24553943	24881207	SPATA13	+	protein_coding	55218	same	5639_ID	chr13	24553949	24609166	55218	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	15
45031	ENST00000445391.1_3	ENST00000413114.6_3	chr22	34119817	34120898	LARGE-IT1	-	lncRNA	chr22	33669062	34318829	LARGE1	-	protein_coding	1081	same	7510_ID	chr22	34119818	34120898	1081	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	15
48121	ENST00000453924.1_1	ENST00000413114.6_3	chr22	33716850	33718799	Z82173.1	+	lncRNA	chr22	33669062	34318829	LARGE1	-	protein_coding	1949	opposite	12938_ID	chr22	33716851	33718799	1949	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	15
63181	ENST00000516221.1	ENST00000675518.1_2	chr4	154186813	154186907	RNU6-1196P	-	snRNA	chr4	154073586	154336107	AC013477.1	+	protein_coding	94	opposite	10899_ID	chr4	154186814	154186907	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	15
74321	ENST00000547009.1_3	ENST00000546837.5_6	chr12	56155333	56156412	AC073487.1	-	lncRNA	chr12	56151058	56221330	AC023055.1	-	protein_coding	1079	same	2528_ID	chr12	56155334	56156412	1079	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	15
78881	ENST00000561622.1_1	ENST00000349945.7_5	chr16	69736967	69738555	AC012321.1	+	lncRNA	chr16	69599868	69738557	NFAT5	+	protein_coding	1588	same	1364_ID	chr16	69736968	69738555	1588	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	15	15
90651	ENST00000580680.1	ENST00000413114.6_3	chr22	33832567	33832655	MIR4764	-	miRNA	chr22	33669062	34318829	LARGE1	-	protein_coding	88	same	8751_ID	chr22	33832568	33832655	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	15
91671	ENST00000581240.1_1	ENST00000540801.6_4	chr17	27966644	27967843	AC104564.1	+	lncRNA	chr17	27952955	28257246	SSH2	-	protein_coding	1199	opposite	3551_ID	chr17	27966645	27967843	1199	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	15
94601	ENST00000582881.1_1	ENST00000540801.6_4	chr17	27971813	27972865	AC104564.5	-	lncRNA	chr17	27952955	28257246	SSH2	-	protein_coding	1052	same	3559_ID	chr17	27971814	27972865	1052	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	15
96831	ENST00000584126.1	ENST00000638776.2_4	chrX	47446827	47446904	MIR4769	+	miRNA	chrX	47434526	47488141	Z84466.1	-	retained_intron	77	opposite	8757_ID	chrX	47446828	47446904	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	15
97991	ENST00000584779.1_3	ENST00000268766.11_2	chr17	27059980	27069783	AC010761.2	-	lncRNA	chr17	27055805	27070473	NEK8	+	protein_coding	10140	opposite	1139_ID	chr17	27059981	27069783	9803	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	15
98681	ENST00000585184.1_3	ENST00000581444.5_3	chr18	20837127	20840318	AC011731.1	-	lncRNA	chr18	20777718	21017896	TMEM241	-	nonsense_mediated_decay	3191	same	1287_ID	chr18	20837128	20840318	3191	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	15
114001	ENST00000617563.1_1	ENST00000299338.11_7	chr15	49635804	49636451	AC022306.2	+	lncRNA	chr15	49619166	49913015	FAM227B	-	protein_coding	647	opposite	1844_ID	chr15	49635805	49636451	647	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	15
114981	ENST00000619930.1_1	ENST00000299338.11_7	chr15	49645681	49646231	AC022306.3	+	lncRNA	chr15	49619166	49913015	FAM227B	-	protein_coding	550	opposite	1847_ID	chr15	49645682	49646231	550	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	15
118341	ENST00000634357.1_1	ENST00000546463.6_4	chr12	53858251	53858841	PCBP2-OT1	+	lncRNA	chr12	53845885	53874946	PCBP2	+	protein_coding	590	same	9507_ID	chr12	53858252	53858841	590	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	15
122521	ENST00000651821.1_1	ENST00000651847.1_3	chr5	124828953	124937922	AC116362.2	+	lncRNA	chr5	124735787	125704447	AC116362.1	-	lncRNA	108969	opposite	3905_ID	chr5	124828954	124937922	108969	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	15
123831	ENST00000655046.1_1	ENST00000359003.7_6	chr20	33329204	33395250	AL109824.1	+	lncRNA	chr20	33302577	33413454	NCOA6	-	protein_coding	66046	opposite	4708_ID	chr20	33329205	33395250	66046	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	15
125701	ENST00000658548.1_3	ENST00000526760.5_1	chr11	66281776	66287191	AP002748.6	-	lncRNA	chr11	66278076	66301084	BBS1	+	nonsense_mediated_decay	5415	opposite	6196_ID	chr11	66281777	66287191	5415	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	15
132181	ENST00000675268.1_1	ENST00000676282.1_1	chr7	112090541	112090700	AC079741.2	+	protein_coding	chr7	112090514	112130996	AC005192.1	+	nonsense_mediated_decay	159	same	2672_ID	chr7	112090542	112090700	159	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	15
295	ENST00000296575.8_2	ENST00000650526.1_3	chr4	145567307	145666423	HHIP	+	protein_coding	chr4	145032191	145792105	AC098588.3	-	lncRNA	99116	opposite	7231_ID	chr4	145567308	145666423	99116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
374	ENST00000308227.2_2	ENST00000403829.7_3	chr14	21525980	21526614	RNASE8	+	protein_coding	chr14	21485379	21539031	NDRG2	-	protein_coding	634	opposite	10534_ID	chr14	21525981	21526614	634	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
436	ENST00000317012.5_4	ENST00000494798.1_1	chr3	111311746	111314193	ZBED2	-	protein_coding	chr3	111261039	111384597	CD96	+	nonsense_mediated_decay	2447	opposite	12993_ID	chr3	111311747	111314193	2447	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
503	ENST00000325203.9_4	ENST00000344683.10_3	chr8	6357171	6420930	ANGPT2	-	protein_coding	chr8	6264147	6506029	MCPH1	+	protein_coding	63778	opposite	5941_ID	chr8	6357172	6420930	63759	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	14
544	ENST00000329468.5_3	ENST00000651136.1_1	chr15	24920921	24928540	NPAP1	+	protein_coding	chr15	24803206	25158071	AC090983.2	+	lncRNA	7619	same	9284_ID	chr15	24920922	24928540	7619	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	14
570	ENST00000332881.3_1	ENST00000620138.4_4	chr11	3011092	3012574	AC131971.1	+	lncRNA	chr11	2965660	3013607	NAP1L4	-	protein_coding	1482	opposite	4096_ID	chr11	3011093	3012574	1482	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
610	ENST00000338148.8_2	ENST00000424491.5_1	chr2	99797646	99816024	MRPL30	+	protein_coding	chr2	99757947	99939196	AC079447.1	+	nonsense_mediated_decay	18410	same	9162_ID	chr2	99797647	99816024	18378	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	5	14
677	ENST00000354432.3_3	ENST00000317977.10_1	chr17	18854937	18857462	AC090286.1	-	lncRNA	chr17	18853657	18925908	SLC5A10	+	protein_coding	2525	opposite	2889_ID	chr17	18854938	18857462	2525	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
686	ENST00000354995.3	ENST00000377457.5	chr9	69252844	69254032	BX255923.1	+	protein_coding	chr9	69204537	69262593	CBWD6	-	protein_coding	1188	opposite	6449_ID	chr9	69252845	69254032	1188	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	14
774	ENST00000362181.1	ENST00000357749.7_4	chrX	85158640	85158712	MIR361	-	miRNA	chrX	85116184	85302562	CHM	-	protein_coding	72	same	8342_ID	chrX	85158641	85158712	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	14
794	ENST00000362232.1	ENST00000509061.5_3	chr4	113569518	113569586	MIR302C	-	miRNA	chr4	113558281	113578742	LARP7	+	protein_coding	68	opposite	8219_ID	chr4	113569519	113569586	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	14
806	ENST00000362275.1	ENST00000509061.5_3	chr4	113569159	113569227	MIR302D	-	miRNA	chr4	113558281	113578742	LARP7	+	protein_coding	68	opposite	8222_ID	chr4	113569160	113569227	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	14
814	ENST00000362299.1	ENST00000509061.5_3	chr4	113569029	113569097	MIR367	-	miRNA	chr4	113558281	113578742	LARP7	+	protein_coding	68	opposite	8379_ID	chr4	113569030	113569097	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	14
862	ENST00000362666.1	ENST00000495893.7_4	chr3	169867632	169867739	RNU6-315P	+	snRNA	chr3	169805371	169899521	PHC3	-	protein_coding	107	opposite	11150_ID	chr3	169867633	169867739	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	14
899	ENST00000362861.1	ENST00000280285.9_3	chr5	32234871	32234981	RNU6-1079P	-	snRNA	chr5	32227099	32313044	MTMR12	-	protein_coding	110	same	10814_ID	chr5	32234872	32234981	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	14
909	ENST00000362926.1	ENST00000377670.9_2	chr19	46809726	46809834	RNU6-924P	-	snRNA	chr19	46800298	46846690	HIF3A	+	protein_coding	108	opposite	11614_ID	chr19	46809727	46809834	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
914	ENST00000362954.1	ENST00000257915.10_4	chr12	51556683	51556790	RNU6-199P	+	snRNA	chr12	51487438	51566918	TFCP2	-	protein_coding	107	opposite	11067_ID	chr12	51556684	51556790	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
987	ENST00000363387.1	ENST00000586622.5_1	chr17	74748993	74749097	RNU6-97P	+	snRNA	chr17	74731946	74774899	MFSD11	+	protein_coding	104	same	11650_ID	chr17	74748994	74749097	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	14
989	ENST00000363399.1	ENST00000264316.9_4	chr4	48108097	48108205	RNU6-838P	-	snRNA	chr4	48068409	48136267	TXK	-	protein_coding	108	same	11545_ID	chr4	48108098	48108205	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
1002	ENST00000363480.1	ENST00000499023.7_4	chr4	155465084	155465189	RNU6-1285P	-	snRNA	chr4	155456156	155471552	PLRG1	-	protein_coding	105	same	10980_ID	chr4	155465085	155465189	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	14
1006	ENST00000363496.1	ENST00000648853.1_3	chr3	93695872	93695979	RNU6-511P	+	snRNA	chr3	93591967	93698847	PROS1	-	protein_coding	107	opposite	11296_ID	chr3	93695873	93695979	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
1038	ENST00000363655.1	ENST00000396113.5_2	chr8	96067441	96067548	RNU6-1209P	+	snRNA	chr8	95908040	96070938	NDUFAF6	+	protein_coding	107	same	10913_ID	chr8	96067442	96067548	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	14
1091	ENST00000363920.1	ENST00000611217.5_3	chr15	22071733	22071840	RNU6-631P	-	snRNA	chr15	22048289	22083259	POTEB3	-	protein_coding	107	same	11394_ID	chr15	22071734	22071840	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	14
1130	ENST00000364104.1	ENST00000226725.11_3	chr4	166173731	166173813	RNU4-87P	+	snRNA	chr4	166128712	166244299	KLHL2	+	protein_coding	82	same	10712_ID	chr4	166173732	166173813	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	14
1145	ENST00000364210.1	ENST00000299353.6_1	chr10	104628177	104628276	RNU6-372P	+	snRNA	chr10	104614028	104661656	BORCS7-ASMT	+	nonsense_mediated_decay	99	same	11189_ID	chr10	104628178	104628276	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
1150	ENST00000364265.1	ENST00000263932.7_2	chr1	12137937	12138041	RNU6-777P	-	snRNA	chr1	12123359	12204264	TNFRSF8	+	protein_coding	104	opposite	11495_ID	chr1	12137938	12138041	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
1166	ENST00000364331.1	ENST00000566392.5_3	chr16	67355560	67355890	RN7SKP118	-	misc_RNA	chr16	67323335	67360656	KCTD19	-	retained_intron	330	same	9772_ID	chr16	67355561	67355890	330	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
1189	ENST00000364454.1	ENST00000610966.5_4	chr12	109320210	109320317	RNU6-361P	-	snRNA	chr12	109301516	109458873	SVOP	-	protein_coding	107	same	11183_ID	chr12	109320211	109320317	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	14
1193	ENST00000364471.1	ENST00000376091.8_4	chrX	49709946	49710053	RNU6-421P	-	snRNA	chrX	49687205	49863887	CLCN5	+	protein_coding	107	opposite	11223_ID	chrX	49709947	49710053	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
1238	ENST00000364711.1	ENST00000379789.8_1	chr10	6191585	6191903	RN7SKP78	+	misc_RNA	chr10	6186896	6277495	PFKFB3	+	protein_coding	318	same	9922_ID	chr10	6191586	6191903	318	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
1338	ENST00000365254.1	ENST00000299192.8_2	chr16	50132174	50132269	RNY4P3	+	misc_RNA	chr16	50099880	50141183	HEATR3	+	protein_coding	95	same	11859_ID	chr16	50132175	50132269	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	14
1451	ENST00000369391.3_3	ENST00000627217.3_5	chr10	114710404	114711634	AL158212.2	-	lncRNA	chr10	114710005	114927437	TCF7L2	+	protein_coding	1230	opposite	5113_ID	chr10	114710405	114711634	1230	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	14
1513	ENST00000374115.5_2	ENST00000339797.5_2	chr10	50818355	50820766	SLC18A3	+	protein_coding	chr10	50817140	50873150	CHAT	+	protein_coding	2411	same	12076_ID	chr10	50818356	50820766	2411	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
1579	ENST00000379256.4_4	ENST00000637215.1_2	chr10	11358795	11361847	CELF2-AS1	-	lncRNA	chr10	10840359	11373149	CELF2	+	protein_coding	3052	opposite	6616_ID	chr10	11358796	11361847	3052	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	14
1613	ENST00000380596.9_3	ENST00000675579.1_1	chr16	29454376	29465883	BOLA2	-	nonsense_mediated_decay	chr16	29454237	29625038	AC133555.6	-	lncRNA	11909	same	6428_ID	chr16	29454377	29465883	11507	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	14
1639	ENST00000382951.4_4	ENST00000403829.7_3	chr14	21500976	21502966	RNASE13	-	protein_coding	chr14	21485379	21539031	NDRG2	-	protein_coding	1990	same	10532_ID	chr14	21500977	21502966	1990	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
1688	ENST00000383966.1	ENST00000620277.4_1	chrX	154003272	154003401	SNORA56	+	snoRNA	chrX	153991016	154005963	DKC1	+	protein_coding	129	same	12185_ID	chrX	154003273	154003401	129	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	12	14
1697	ENST00000383975.1	ENST00000332995.12_2	chr6	13214287	13214451	RNU1-11P	+	snRNA	chr6	12716998	13288069	PHACTR1	+	protein_coding	164	same	10557_ID	chr6	13214288	13214451	164	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	14
1755	ENST00000384142.1	ENST00000392717.6_3	chr2	165544152	165544287	SNORA70F	-	snoRNA	chr2	165536695	165698678	COBLL1	-	protein_coding	135	same	12199_ID	chr2	165544153	165544287	135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	14
1762	ENST00000384165.1	ENST00000327134.7_2	chr3	196511850	196511957	RNU6-42P	-	snRNA	chr3	196466727	196559518	PAK2	+	protein_coding	107	opposite	11231_ID	chr3	196511851	196511957	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
1776	ENST00000384204.1	ENST00000361824.7_4	chr1	150674341	150674448	RNU6-1042P	+	snRNA	chr1	150670535	150693371	HORMAD1	-	protein_coding	107	opposite	10788_ID	chr1	150674342	150674448	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
1802	ENST00000384277.1	ENST00000356218.8_3	chr14	52190820	52190927	RNU6-301P	+	snRNA	chr14	51955854	52197177	FRMD6	+	protein_coding	107	same	11142_ID	chr14	52190821	52190927	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
1804	ENST00000384281.1	ENST00000620138.4_4	chr11	2985000	2985123	SNORA54	-	snoRNA	chr11	2965660	3013607	NAP1L4	-	protein_coding	123	same	12182_ID	chr11	2985001	2985123	123	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	14
1808	ENST00000384292.1	ENST00000257192.5_2	chr18	28925324	28925430	RNU6-167P	-	snRNA	chr18	28898122	28939209	DSG1	+	protein_coding	106	opposite	11044_ID	chr18	28925325	28925430	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
1819	ENST00000384324.1	ENST00000280285.9_3	chr5	32309767	32309874	RNU6-378P	+	snRNA	chr5	32227099	32313044	MTMR12	-	protein_coding	107	opposite	11194_ID	chr5	32309768	32309874	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
1845	ENST00000384431.1	ENST00000269142.10_3	chr18	23946264	23946370	RNU6-1289P	-	snRNA	chr18	23806408	23971649	TAF4B	+	protein_coding	106	opposite	10983_ID	chr18	23946265	23946370	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	14
1945	ENST00000384683.1	ENST00000536262.3_4	chr12	101593048	101593155	RNU6-768P	-	snRNA	chr12	101549270	101604016	SLC5A8	-	protein_coding	107	same	11488_ID	chr12	101593049	101593155	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
1996	ENST00000384823.1	ENST00000354216.11_4	chr20	62573983	62574079	MIR647	-	miRNA	chr20	62571181	62587769	UCKL1	-	protein_coding	96	same	9054_ID	chr20	62573984	62574079	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	14
2052	ENST00000384890.1	ENST00000326495.10_4	chr12	109230683	109230782	MIR619	-	miRNA	chr12	109171966	109251359	SSH1	-	protein_coding	99	same	9023_ID	chr12	109230684	109230782	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
2077	ENST00000384957.1	ENST00000379887.9_4	chr15	72879557	72879654	MIR630	+	miRNA	chr15	72766670	72895328	ARIH1	+	protein_coding	97	same	9034_ID	chr15	72879558	72879654	97	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	14	14
2120	ENST00000385025.1	ENST00000376091.8_4	chrX	49767753	49767844	MIR532	+	miRNA	chrX	49687205	49863887	CLCN5	+	protein_coding	91	same	8860_ID	chrX	49767754	49767844	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
2126	ENST00000385034.1	ENST00000376091.8_4	chrX	49768108	49768194	MIR188	+	miRNA	chrX	49687205	49863887	CLCN5	+	protein_coding	86	same	8132_ID	chrX	49768109	49768194	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
2140	ENST00000385051.1	ENST00000376091.8_4	chrX	49773038	49773122	MIR500A	+	miRNA	chrX	49687205	49863887	CLCN5	+	protein_coding	84	same	8814_ID	chrX	49773039	49773122	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
2182	ENST00000385192.1	ENST00000509061.5_3	chr4	113569338	113569407	MIR302A	-	miRNA	chr4	113558281	113578742	LARP7	+	protein_coding	69	opposite	8218_ID	chr4	113569339	113569407	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	14
2197	ENST00000385209.1	ENST00000358869.5_2	chr4	38869652	38869748	MIR574	+	miRNA	chr4	38869426	38947360	FAM114A1	+	protein_coding	96	same	8977_ID	chr4	38869653	38869748	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
2216	ENST00000385235.1	ENST00000376091.8_4	chrX	49777848	49777945	MIR660	+	miRNA	chrX	49687205	49863887	CLCN5	+	protein_coding	97	same	9064_ID	chrX	49777849	49777945	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
2224	ENST00000385248.1	ENST00000534843.1_1	chr12	12917582	12917677	MIR613	+	miRNA	chr12	12878862	12982909	APOLD1	+	nonsense_mediated_decay	95	same	9013_ID	chr12	12917583	12917677	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
2247	ENST00000385280.1	ENST00000376091.8_4	chrX	49773571	49773636	MIR362	+	miRNA	chrX	49687205	49863887	CLCN5	+	protein_coding	65	same	8355_ID	chrX	49773572	49773636	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
2300	ENST00000390204.1	ENST00000376091.8_4	chrX	49774329	49774413	MIR501	+	miRNA	chrX	49687205	49863887	CLCN5	+	protein_coding	84	same	8816_ID	chrX	49774330	49774413	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
2356	ENST00000390825.1	ENST00000379516.7_2	chr5	122112125	122112222	AC093267.1	-	miRNA	chr5	122110774	122170238	SNX2	+	protein_coding	97	opposite	3190_ID	chr5	122112126	122112222	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
2420	ENST00000391117.1	ENST00000377477.2	chr9	67937392	67937499	RNU6-368P	+	snRNA	chr9	67926760	67969840	ANKRD20A1	+	protein_coding	107	same	11185_ID	chr9	67937393	67937499	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
2430	ENST00000391150.1	ENST00000394799.6_1	chr3	52726751	52726828	SNORD69	+	snoRNA	chr3	52720031	52728508	GNL3	+	protein_coding	77	same	12439_ID	chr3	52726752	52726828	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	14
2448	ENST00000391232.1	ENST00000264279.10_2	chr2	203141153	203141241	SNORD70	+	snoRNA	chr2	203130485	203168384	NOP58	+	protein_coding	1762	same	12441_ID	chr2	203141154	203141241	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
2458	ENST00000391310.1	ENST00000547889.6_3	chr14	19564784	19564891	RNU6-1239P	+	snRNA	chr14	19553364	19589682	POTEM	+	protein_coding	107	same	10936_ID	chr14	19564785	19564891	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
2574	ENST00000401190.1	ENST00000309755.9_6	chr5	136983260	136983338	MIR874	-	miRNA	chr5	136953188	137071778	KLHL3	-	protein_coding	78	same	9093_ID	chr5	136983261	136983338	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	14
2595	ENST00000401274.1	ENST00000349752.10_4	chr2	31258418	31258510	AC009305.2	+	miRNA	chr2	31133332	31361306	GALNT14	-	protein_coding	92	opposite	945_ID	chr2	31258419	31258510	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
2630	ENST00000404991.2_3	ENST00000399583.4_4	chr7	4897368	4901661	PAPOLB	-	protein_coding	chr7	4836685	4923347	RADIL	-	protein_coding	4293	same	9497_ID	chr7	4897369	4901661	4293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
2697	ENST00000408238.1	ENST00000407071.7_5	chr1	245533635	245533721	AL359983.1	+	miRNA	chr1	245318286	245872734	KIF26B	+	protein_coding	86	same	5512_ID	chr1	245533636	245533721	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
2730	ENST00000408319.1	ENST00000551590.5_1	chr12	111070408	111070498	AC144522.1	+	miRNA	chr12	111051831	111087235	TCTN1	+	protein_coding	90	same	4228_ID	chr12	111070409	111070498	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
2782	ENST00000408447.1	ENST00000410091.7_2	chr2	202705851	202705953	AC007242.1	+	miRNA	chr2	202655183	202758266	CDK15	+	protein_coding	102	same	531_ID	chr2	202705852	202705953	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	14
2792	ENST00000408467.1	ENST00000292591.12_4	chr5	179225277	179225346	MIR1229	-	miRNA	chr5	179224609	179233866	MGAT4B	-	protein_coding	69	same	7988_ID	chr5	179225278	179225346	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
2982	ENST00000409061.2_2	ENST00000199389.11_4	chr7	6071006	6076183	ANKRD61	+	protein_coding	chr7	6061877	6098806	EIF2AK1	-	protein_coding	5177	opposite	5955_ID	chr7	6071007	6076183	5177	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	14
3003	ENST00000410042.1_1	ENST00000424491.5_1	chr2	99771460	99811761	AC092587.1	+	protein_coding	chr2	99757947	99939196	AC079447.1	+	nonsense_mediated_decay	40301	same	3106_ID	chr2	99771461	99811761	40301	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	5	14
3036	ENST00000410247.1	ENST00000409746.5_4	chr18	43569618	43569911	RN7SKP26	-	misc_RNA	chr18	43563501	43652226	PSTPIP2	-	protein_coding	293	same	9860_ID	chr18	43569619	43569911	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
3071	ENST00000410413.1	ENST00000394799.6_1	chr3	52725393	52725469	SNORD19	+	snoRNA	chr3	52720031	52728508	GNL3	+	protein_coding	2206	same	12385_ID	chr3	52725394	52725469	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	14
3252	ENST00000411352.1	ENST00000677039.1_1	chr19	41213959	41214068	RNU6-195P	-	snRNA	chr19	41197434	41231689	COQ8B	-	retained_intron	109	same	11062_ID	chr19	41213960	41214068	109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	14
3254	ENST00000411359.1	ENST00000332995.12_2	chr6	12753906	12754003	AL354680.1	+	miRNA	chr6	12716998	13288069	PHACTR1	+	protein_coding	97	same	5274_ID	chr6	12753907	12754003	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	14
3264	ENST00000411392.1	ENST00000304987.4_2	chr11	111553834	111554148	RN7SKP273	+	misc_RNA	chr11	111473172	111601579	SIK2	+	protein_coding	314	same	9872_ID	chr11	111553835	111554148	314	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
3267	ENST00000411404.1	ENST00000409879.6_3	chr13	46948535	46948725	RNU2-6P	-	snRNA	chr13	46917101	47012325	RUBCNL	-	protein_coding	190	same	10655_ID	chr13	46948536	46948725	190	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
3303	ENST00000411998.1_3	ENST00000646150.1_2	chr21	34636177	34638565	IL10RB-DT	-	lncRNA	chr21	34602205	34669465	AP000295.1	+	nonsense_mediated_decay	2388	opposite	7345_ID	chr21	34636178	34638565	2388	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	14
3369	ENST00000413841.1_3	ENST00000273009.10_1	chr2	232843197	232880430	AC019130.1	-	lncRNA	chr2	232825954	233209060	DIS3L2	+	protein_coding	37233	opposite	1690_ID	chr2	232843198	232880430	37233	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	14
3401	ENST00000414565.1_3	ENST00000407071.7_5	chr1	245837033	245839780	AC104462.1	-	lncRNA	chr1	245318286	245872734	KIF26B	+	protein_coding	2747	opposite	3539_ID	chr1	245837034	245839780	2747	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	14
3503	ENST00000417123.1_1	ENST00000355630.10_6	chr22	40917803	40922711	MRTFA-AS1	+	lncRNA	chr22	40806292	41032723	MRTFA	-	protein_coding	4908	opposite	9171_ID	chr22	40917804	40922711	4908	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
3509	ENST00000417273.1_3	ENST00000637215.1_2	chr10	11210884	11213339	AL136320.1	-	lncRNA	chr10	10840359	11373149	CELF2	+	protein_coding	2455	opposite	4901_ID	chr10	11210885	11213339	2455	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
3515	ENST00000417401.1_1	ENST00000370244.5_5	chr1	94057806	94071130	BCAR3-AS1	+	lncRNA	chr1	94027347	94312706	BCAR3	-	protein_coding	13375	opposite	6403_ID	chr1	94057807	94071130	13324	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	14
3547	ENST00000418402.1_3	ENST00000407071.7_5	chr1	245778074	245778447	AC104462.2	-	lncRNA	chr1	245318286	245872734	KIF26B	+	protein_coding	373	opposite	3540_ID	chr1	245778075	245778447	373	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	14
3607	ENST00000419904.1_1	ENST00000283148.12_3	chr2	106795997	106800253	AC018878.1	+	lncRNA	chr2	106709766	106810757	UXS1	-	protein_coding	4256	opposite	1671_ID	chr2	106795998	106800253	4256	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
3639	ENST00000420825.2_4	ENST00000637215.1_2	chr10	11002110	11012779	AL136369.2	+	lncRNA	chr10	10840359	11373149	CELF2	+	protein_coding	10669	same	4907_ID	chr10	11002111	11012779	10669	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
3656	ENST00000421345.5_3	ENST00000393446.6_6	chr7	116594444	116759773	AC106873.8	+	protein_coding	chr7	116593291	116870150	ST7	+	protein_coding	165329	same	3670_ID	chr7	116594445	116759773	165329	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	14
3706	ENST00000422401.1_3	ENST00000451558.5_1	chr7	123224912	123264636	ASB15-AS1	-	lncRNA	chr7	123207063	123279535	ASB15	+	protein_coding	40099	opposite	6352_ID	chr7	123224913	123264636	39724	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	14
3730	ENST00000422931.2_1	ENST00000563635.5_1	chr13	76205406	76206271	AL137244.1	+	lncRNA	chr13	76123908	76381256	AL137782.1	+	lncRNA	865	same	4949_ID	chr13	76205407	76206271	865	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	14
3736	ENST00000423075.1_1	ENST00000289081.8_6	chr9	97875989	97876743	AL354893.2	+	lncRNA	chr9	97861335	98079991	FANCC	-	protein_coding	754	opposite	5295_ID	chr9	97875990	97876743	754	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	14
3737	ENST00000423120.1_3	ENST00000306156.8_2	chr2	45901839	45902615	PRKCE-AS1	-	lncRNA	chr2	45878813	46415129	PRKCE	+	protein_coding	776	opposite	9637_ID	chr2	45901840	45902615	776	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
3796	ENST00000424690.1_3	ENST00000454872.6_3	chr3	174952650	174988885	NAALADL2-AS2	-	lncRNA	chr3	174577123	175528336	NAALADL2	+	protein_coding	36235	opposite	9219_ID	chr3	174952651	174988885	36235	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	14
3837	ENST00000425779.1_1	ENST00000394440.8_4	chr2	62095566	62113217	AC107081.1	+	lncRNA	chr2	62095219	62115791	CCT4	-	protein_coding	17651	opposite	3683_ID	chr2	62095567	62113217	17651	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	14
3875	ENST00000427630.1_3	ENST00000379789.8_1	chr10	6239574	6244656	AL157395.1	-	lncRNA	chr10	6186896	6277495	PFKFB3	+	protein_coding	5082	opposite	5058_ID	chr10	6239575	6244656	5082	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
3916	ENST00000428853.2	ENST00000637215.1_2	chr10	11072296	11072831	RP11-397O4.1	+	sense_intronic	chr10	10840359	11373149	CELF2	+	protein_coding	535	same	11908_ID	chr10	11072297	11072831	535	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
4042	ENST00000432370.3_4	ENST00000637215.1_2	chr10	11113503	11147467	CELF2-AS2	-	lncRNA	chr10	10840359	11373149	CELF2	+	protein_coding	34233	opposite	6617_ID	chr10	11113504	11147467	33964	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
4052	ENST00000432541.5_3	ENST00000393446.6_6	chr7	116712480	116785612	ST7-AS2	-	lncRNA	chr7	116593291	116870150	ST7	+	protein_coding	74409	opposite	12560_ID	chr7	116712481	116785612	73132	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	14
4072	ENST00000433131.1_3	ENST00000526589.5_1	chr1	236703393	236713580	AL359921.1	-	lncRNA	chr1	236681572	236716281	LGALS8	+	protein_coding	10187	opposite	5505_ID	chr1	236703394	236713580	10187	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	14
4077	ENST00000433249.1_1	ENST00000618427.4_3	chr10	61041906	61042595	AC025038.1	+	lncRNA	chr10	61005889	61122352	FAM13C	-	protein_coding	689	opposite	2047_ID	chr10	61041907	61042595	689	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	14
4107	ENST00000434250.1_1	ENST00000318080.7_4	chr9	131860132	131862545	AL158151.2	+	lncRNA	chr9	131857072	131873072	CRAT	-	protein_coding	9298	opposite	5100_ID	chr9	131860133	131862545	2413	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	14
4116	ENST00000434531.1_3	ENST00000636308.1_2	chr7	76601995	76606278	AC114737.1	-	lncRNA	chr7	76589151	76655050	DTX2P1-UPK3BP1-PMS2P11	+	lncRNA	4283	opposite	3870_ID	chr7	76601996	76606278	4283	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
4161	ENST00000435621.3_1	ENST00000262056.14_3	chr12	53405887	53407705	AC068888.2	+	lncRNA	chr12	53400239	53435999	EIF4B	+	protein_coding	1818	same	2456_ID	chr12	53405888	53407705	1818	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
4243	ENST00000437825.1_3	ENST00000637215.1_2	chr10	11052126	11053082	AL136369.1	-	lncRNA	chr10	10840359	11373149	CELF2	+	protein_coding	956	opposite	4906_ID	chr10	11052127	11053082	956	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
4315	ENST00000439849.1_1	ENST00000336199.9_4	chr1	243708833	243711631	AL591721.1	+	lncRNA	chr1	243651534	244006538	AKT3	-	protein_coding	2798	opposite	5797_ID	chr1	243708834	243711631	2798	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	14
4359	ENST00000441093.1_1	ENST00000448507.5_2	chr4	6997067	7000685	AC097382.1	+	lncRNA	chr4	6911170	7034845	TBC1D14	+	protein_coding	3618	same	3310_ID	chr4	6997068	7000685	3618	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	14
4455	ENST00000444077.1_4	ENST00000306156.8_2	chr2	46305153	46305967	AC017006.2	-	lncRNA	chr2	45878813	46415129	PRKCE	+	protein_coding	814	opposite	1587_ID	chr2	46305154	46305967	814	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	14
4493	ENST00000445235.1_3	ENST00000377524.8_2	chr10	17737707	17742231	AC069542.1	-	lncRNA	chr10	17686149	17758823	STAM	+	protein_coding	4524	opposite	2492_ID	chr10	17737708	17742231	4524	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	14
4503	ENST00000445508.1_3	ENST00000425538.6_3	chr17	12575178	12609452	MYOCD-AS1	-	lncRNA	chr17	12569206	12672266	MYOCD	+	protein_coding	34274	opposite	9211_ID	chr17	12575179	12609452	34274	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	14
4533	ENST00000446321.1_3	ENST00000407071.7_5	chr1	245369745	245397803	KIF26B-AS1	-	lncRNA	chr1	245318286	245872734	KIF26B	+	protein_coding	28058	opposite	7442_ID	chr1	245369746	245397803	28058	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
4654	ENST00000449780.1_1	ENST00000349752.10_4	chr2	31209804	31214292	AC009305.1	+	lncRNA	chr2	31133332	31361306	GALNT14	-	protein_coding	4488	opposite	944_ID	chr2	31209805	31214292	4488	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
4659	ENST00000449931.1_1	ENST00000406470.6_4	chr7	8153654	8156191	AC006042.1	+	lncRNA	chr7	8152816	8302242	ICA1	-	protein_coding	2537	opposite	401_ID	chr7	8153655	8156191	2537	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	14
4664	ENST00000450080.1_3	ENST00000306156.8_2	chr2	46393927	46395117	AC017006.1	-	lncRNA	chr2	45878813	46415129	PRKCE	+	protein_coding	1190	opposite	1586_ID	chr2	46393928	46395117	1190	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	14
4695	ENST00000451090.1_3	ENST00000634502.1_1	chr1	59521670	59543788	AL592431.1	-	lncRNA	chr1	59399314	59569492	LINC01358	+	lncRNA	22118	opposite	5814_ID	chr1	59521671	59543788	22118	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	14
4766	ENST00000452639.7_3	ENST00000433647.5_1	chr3	42548141	42574723	VIPR1-AS1	-	lncRNA	chr3	42530790	42579059	VIPR1	+	protein_coding	26794	opposite	12891_ID	chr3	42548142	42574723	26582	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	14
4818	ENST00000454123.1_3	ENST00000400206.7_4	chr22	38783922	38784862	Z98749.1	-	lncRNA	chr22	38687923	38794527	TPTEP2-CSNK1E	-	protein_coding	940	same	12974_ID	chr22	38783923	38784862	940	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
4882	ENST00000456002.2_2	ENST00000371839.6_6	chr1	49491266	49653257	AC099788.1	+	lncRNA	chr1	48998525	50489626	AGBL4	-	protein_coding	161991	opposite	3394_ID	chr1	49491267	49653257	161991	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	14
4930	ENST00000457113.1_3	ENST00000301194.8_1	chr19	54941831	54945878	AC245884.1	-	lncRNA	chr19	54926604	54948080	TTYH1	+	protein_coding	4047	opposite	4313_ID	chr19	54941832	54945878	4047	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	14
5001	ENST00000458818.1	ENST00000559488.7_3	chr17	45336723	45336786	RNU7-186P	-	snRNA	chr17	45331192	45391109	ITGB3	+	protein_coding	63	opposite	11752_ID	chr17	45336724	45336786	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
5010	ENST00000458843.1	ENST00000376091.8_4	chrX	49775278	49775357	MIR500B	+	miRNA	chrX	49687205	49863887	CLCN5	+	protein_coding	79	same	8815_ID	chrX	49775279	49775357	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
5073	ENST00000459237.1	ENST00000254835.2	chr9	43122798	43122905	RNU6-538P	-	snRNA	chr9	43089971	43133544	ANKRD20A3	-	protein_coding	107	same	11320_ID	chr9	43122799	43122905	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
5084	ENST00000459300.1	ENST00000610966.5_4	chr12	109425359	109425450	AC190387.1	-	miRNA	chr12	109301516	109458873	SVOP	-	protein_coding	91	same	4246_ID	chr12	109425360	109425450	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
5112	ENST00000459461.1	ENST00000357336.3_1	chr9	69392611	69392718	RNU6-1193P	+	snRNA	chr9	69381811	69425560	ANKRD20A4P	+	protein_coding	107	same	10896_ID	chr9	69392612	69392718	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
5143	ENST00000459623.1	ENST00000394799.6_1	chr3	52724759	52724843	SNORD19B	+	snoRNA	chr3	52720031	52728508	GNL3	+	protein_coding	1946	same	12386_ID	chr3	52724760	52724843	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	14
5206	ENST00000464176.2	ENST00000334318.10_4	chr9	115034875	115035111	RN7SL430P	-	misc_RNA	chr9	114979995	115095944	PTBP3	-	protein_coding	236	same	10177_ID	chr9	115034876	115035111	236	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	14
5310	ENST00000470869.2	ENST00000370801.8_4	chr1	78111008	78111301	RN7SL370P	+	misc_RNA	chr1	78028100	78148343	ZZZ3	-	protein_coding	293	opposite	10136_ID	chr1	78111009	78111301	293	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
5374	ENST00000474641.2_3	ENST00000370888.6_2	chr6	53783771	53785586	AL033384.2	-	lncRNA	chr6	53659802	53788923	LRRC1	+	protein_coding	1815	opposite	4575_ID	chr6	53783772	53785586	1815	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	14
5375	ENST00000474805.5_1	ENST00000621282.4_3	chr13	50570948	50594617	TRIM13	+	processed_transcript	chr13	50556687	50699677	DLEU2	-	lncRNA	24594	opposite	12777_ID	chr13	50570949	50594617	23669	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	14
5394	ENST00000476186.2_1	ENST00000545394.2_1	chr8	37980791	37982169	AC084024.1	+	lncRNA	chr8	37963010	37997598	ASH2L	+	protein_coding	1378	same	2732_ID	chr8	37980792	37982169	1378	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	14
5438	ENST00000479085.1_3	ENST00000542328.5_2	chr7	150725867	150726841	AC010973.1	-	lncRNA	chr7	150725508	150744869	ABCB8	+	protein_coding	974	opposite	1164_ID	chr7	150725868	150726841	974	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
5451	ENST00000480512.2	ENST00000199389.11_4	chr7	6087353	6087651	RN7SL851P	-	misc_RNA	chr7	6061877	6098806	EIF2AK1	-	protein_coding	298	same	10480_ID	chr7	6087354	6087651	298	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	14
5466	ENST00000481538.1_1	ENST00000403829.7_3	chr14	21510474	21512393	RNASE7	+	nonsense_mediated_decay	chr14	21485379	21539031	NDRG2	-	protein_coding	1919	opposite	10533_ID	chr14	21510475	21512393	1919	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
5501	ENST00000484117.2	ENST00000621161.5_3	chr17	29792560	29792848	RN7SL79P	+	misc_RNA	chr17	29718692	29865230	RAB11FIP4	+	protein_coding	288	same	10442_ID	chr17	29792561	29792848	288	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
5517	ENST00000485107.2	ENST00000435564.5_4	chr2	183179010	183179269	RN7SL267P	+	misc_RNA	chr2	183004762	183387304	PDE1A	-	protein_coding	259	opposite	10064_ID	chr2	183179011	183179269	259	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
5555	ENST00000487567.2_2	ENST00000526589.5_1	chr1	236686351	236687808	LGALS8-AS1	-	lncRNA	chr1	236681572	236716281	LGALS8	+	protein_coding	1457	opposite	7520_ID	chr1	236686352	236687808	1457	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	14
5606	ENST00000491451.2	ENST00000370952.4_4	chr1	70645828	70646123	RN7SL242P	-	misc_RNA	chr1	70610487	70671262	LRRC40	-	protein_coding	295	same	10050_ID	chr1	70645829	70646123	295	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
5644	ENST00000493687.2	ENST00000334318.10_4	chr9	115004831	115005119	RN7SL57P	-	misc_RNA	chr9	114979995	115095944	PTBP3	-	protein_coding	288	same	10282_ID	chr9	115004832	115005119	288	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	14
5669	ENST00000495917.1_1	ENST00000296181.9_4	chr3	124500001	124506604	ITGB5-AS1	+	lncRNA	chr3	124480794	124606212	ITGB5	-	protein_coding	6603	opposite	7378_ID	chr3	124500002	124506604	6603	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	14
5686	ENST00000497296.2	ENST00000352456.7_1	chr19	41792319	41792599	RN7SL34P	-	misc_RNA	chr19	41768400	41813503	HNRNPUL1	+	protein_coding	280	opposite	10122_ID	chr19	41792320	41792599	280	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	14
5830	ENST00000504865.3_3	ENST00000290341.8_2	chr17	47082092	47091087	AC091133.4	-	lncRNA	chr17	47074746	47133507	IGF2BP1	+	protein_coding	8995	opposite	2981_ID	chr17	47082093	47091087	8995	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
5847	ENST00000505354.2_3	ENST00000226725.11_3	chr4	166198963	166200831	GK3P	-	protein_coding	chr4	166128712	166244299	KLHL2	+	protein_coding	1868	opposite	7129_ID	chr4	166198964	166200831	1868	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
5863	ENST00000505781.1_1	ENST00000636793.2_6	chr4	150587208	150632301	AC093893.1	+	lncRNA	chr4	150272860	150736995	IQCM	-	protein_coding	45093	opposite	3259_ID	chr4	150587209	150632301	45093	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	14
5887	ENST00000506514.1_1	ENST00000509702.5_3	chr4	23781212	23784183	AC092834.1	+	lncRNA	chr4	23756663	23883734	PPARGC1A	-	processed_transcript	2971	opposite	3158_ID	chr4	23781213	23784183	2971	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
6078	ENST00000512359.1_3	ENST00000650526.1_3	chr4	145564523	145582509	HHIP-AS1	-	lncRNA	chr4	145032191	145792105	AC098588.3	-	lncRNA	18436	same	7234_ID	chr4	145564524	145582509	17986	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
6117	ENST00000513586.1_1	ENST00000405303.7_4	chr4	16180561	16184743	AC108063.1	+	lncRNA	chr4	16162127	16228094	TAPT1	-	protein_coding	4182	opposite	3718_ID	chr4	16180562	16184743	4182	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	14
6126	ENST00000513899.1_3	ENST00000342785.8_3	chr5	82837295	82877139	VCAN-AS1	-	lncRNA	chr5	82767492	82878122	VCAN	+	protein_coding	49969	opposite	12889_ID	chr5	82837296	82877139	39844	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	14
6144	ENST00000514334.1_1	ENST00000508784.6_5	chr4	146754269	146760732	AC104791.1	+	lncRNA	chr4	146678778	146859975	ZNF827	-	protein_coding	6463	opposite	3571_ID	chr4	146754270	146760732	6463	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	14
6181	ENST00000515530.1_1	ENST00000513335.5_3	chr4	147855152	147866623	AC092435.2	+	lncRNA	chr4	147627789	147866984	TTC29	-	protein_coding	11471	opposite	3093_ID	chr4	147855153	147866623	11471	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	14
6210	ENST00000515915.1	ENST00000241436.8_1	chr5	74834422	74834483	RNU7-175P	-	snRNA	chr5	74807580	74896969	POLK	+	protein_coding	61	opposite	11745_ID	chr5	74834423	74834483	61	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
6221	ENST00000515943.1	ENST00000376438.5_3	chr9	85890855	85891029	RNU4-29P	+	snRNA	chr9	85857904	86153461	FRMD3	-	protein_coding	174	opposite	10673_ID	chr9	85890856	85891029	174	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
6225	ENST00000515948.1	ENST00000409602.2_2	chr2	131380410	131380517	RNU6-848P	+	snRNA	chr2	131369012	131415610	POTEJ	+	protein_coding	107	same	11552_ID	chr2	131380411	131380517	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
6228	ENST00000515962.1	ENST00000356218.8_3	chr14	52071556	52071618	RNU6-1033P	-	snRNA	chr14	51955854	52197177	FRMD6	+	protein_coding	62	opposite	10781_ID	chr14	52071557	52071618	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
6294	ENST00000516164.1	ENST00000451531.7_4	chr2	131255315	131255422	RNU6-473P	-	snRNA	chr2	131217027	131266901	POTEI	-	protein_coding	107	same	11266_ID	chr2	131255316	131255422	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
6345	ENST00000516315.1	ENST00000355630.10_6	chr22	40924060	40924137	AL031594.1	-	miRNA	chr22	40806292	41032723	MRTFA	-	protein_coding	77	same	4525_ID	chr22	40924061	40924137	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
6434	ENST00000516576.1	ENST00000409879.6_3	chr13	46984588	46984692	RNU6-68P	+	snRNA	chr13	46917101	47012325	RUBCNL	-	protein_coding	104	opposite	11433_ID	chr13	46984589	46984692	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
6440	ENST00000516591.1	ENST00000356218.8_3	chr14	51989581	51989685	RNU6-1291P	+	snRNA	chr14	51955854	52197177	FRMD6	+	protein_coding	104	same	10986_ID	chr14	51989582	51989685	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
6503	ENST00000516781.1	ENST00000258729.8_4	chr7	23490276	23490341	RNU7-143P	+	snRNA	chr7	23349827	23510110	IGF2BP3	-	protein_coding	65	opposite	11725_ID	chr7	23490277	23490341	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
6511	ENST00000516810.1	ENST00000319294.11_3	chr21	43837605	43837702	RNU6-1149P	-	snRNA	chr21	43824010	43867794	UBASH3A	+	protein_coding	97	opposite	10855_ID	chr21	43837606	43837702	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	14
6520	ENST00000516827.1	ENST00000290341.8_2	chr17	47113713	47113817	RNU6-826P	+	snRNA	chr17	47074746	47133507	IGF2BP1	+	protein_coding	104	same	11533_ID	chr17	47113714	47113817	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
6559	ENST00000516948.1	ENST00000641051.1_5	chr4	87257470	87257767	RN7SKP96	-	misc_RNA	chr4	86935026	87515778	MAPK10	-	protein_coding	297	same	9938_ID	chr4	87257471	87257767	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
6562	ENST00000516957.1	ENST00000651734.1_3	chrY	21180868	21180973	RNU6-255P	-	snRNA	chrY	20934628	21239108	TTTY14	-	lncRNA	105	same	11105_ID	chrY	21180869	21180973	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	14
6629	ENST00000517120.1	ENST00000199389.11_4	chr7	6097130	6097235	RNU6-218P	+	snRNA	chr7	6061877	6098806	EIF2AK1	-	protein_coding	105	opposite	11081_ID	chr7	6097131	6097235	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
6646	ENST00000517164.1	ENST00000252575.11_2	chr19	19343663	19343756	RNU6-1028P	+	snRNA	chr19	19322766	19363042	NCAN	+	protein_coding	93	same	10780_ID	chr19	19343664	19343756	93	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	14
6680	ENST00000517241.1	ENST00000264316.9_4	chr4	48111369	48111427	RNU6-868P	-	snRNA	chr4	48068409	48136267	TXK	-	protein_coding	58	same	11572_ID	chr4	48111370	48111427	58	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
6683	ENST00000517247.1	ENST00000302506.8_5	chr3	48221817	48221879	RNU7-128P	+	snRNA	chr3	48198635	48229907	CDC25A	-	protein_coding	62	opposite	11715_ID	chr3	48221818	48221879	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	14
6730	ENST00000517950.1_3	ENST00000637795.2_6	chr8	1196788	1198760	AC110288.1	-	lncRNA	chr8	687627	1656642	DLGAP2	+	protein_coding	1972	opposite	3785_ID	chr8	1196789	1198760	1972	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
6792	ENST00000519692.1_1	ENST00000389131.8_4	chr8	23193720	23223638	AC090197.1	+	lncRNA	chr8	23154409	23261633	LOXL2	-	protein_coding	29955	opposite	2878_ID	chr8	23193721	23223638	29918	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	14
6926	ENST00000523905.5_1	ENST00000396113.5_2	chr8	95962264	95963624	AC087752.3	+	lncRNA	chr8	95908040	96070938	NDUFAF6	+	protein_coding	1360	same	2849_ID	chr8	95962265	95963624	1360	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
6930	ENST00000524042.1_3	ENST00000382254.6_5	chr5	22139355	22141577	AC139497.1	-	lncRNA	chr5	21750781	22853453	CDH12	-	protein_coding	2222	same	4207_ID	chr5	22139356	22141577	2222	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	14
6936	ENST00000524412.1_3	ENST00000426335.6_3	chr11	47189831	47191114	AC090589.3	-	lncRNA	chr11	47185849	47198676	ARFGAP2	-	protein_coding	1283	same	2917_ID	chr11	47189832	47191114	1283	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	14
7018	ENST00000527518.1_3	ENST00000648836.1_3	chr12	4809582	4829268	GAU1	-	lncRNA	chr12	4758266	4883350	AC005833.1	+	protein_coding	19686	opposite	7109_ID	chr12	4809583	4829268	19686	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	14
7020	ENST00000527620.5_1	ENST00000329451.8_5	chr11	557594	560106	LMNTD2-AS1	+	lncRNA	chr11	554849	560738	LMNTD2	-	protein_coding	2513	opposite	7836_ID	chr11	557595	560106	2512	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	14
7065	ENST00000529298.1_3	ENST00000356136.8_3	chr11	75848358	75848775	AP002340.1	-	lncRNA	chr11	75526254	75855276	UVRAG	+	protein_coding	417	opposite	6183_ID	chr11	75848359	75848775	417	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	14
7075	ENST00000529743.2_5	ENST00000527139.7_5	chr8	144840322	144854040	AC105219.3	-	lncRNA	chr8	144816308	144872815	IQANK1	+	protein_coding	13718	opposite	3605_ID	chr8	144840323	144854040	13718	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	14
7122	ENST00000531215.1_1	ENST00000356136.8_3	chr11	75625244	75626257	AP003168.2	+	lncRNA	chr11	75526254	75855276	UVRAG	+	protein_coding	1013	same	6243_ID	chr11	75625245	75626257	1013	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	14
7125	ENST00000531268.1_1	ENST00000263776.9_2	chr11	44093011	44093953	AC134775.1	+	lncRNA	chr11	44087819	44105787	ACCS	+	protein_coding	942	same	4130_ID	chr11	44093012	44093953	942	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
7136	ENST00000531638.1_1	ENST00000403829.7_3	chr14	21500976	21502054	AL161668.2	+	lncRNA	chr14	21485379	21539031	NDRG2	-	protein_coding	1078	opposite	5158_ID	chr14	21500977	21502054	1078	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
7194	ENST00000533755.5_1	ENST00000403829.7_3	chr14	21492267	21499167	TPPP2	+	retained_intron	chr14	21485379	21539031	NDRG2	-	protein_coding	12168	opposite	12770_ID	chr14	21492268	21499167	6900	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
7204	ENST00000533984.1_1	ENST00000403829.7_3	chr14	21492330	21497404	AL161668.4	+	lncRNA	chr14	21485379	21539031	NDRG2	-	protein_coding	5100	opposite	5159_ID	chr14	21492331	21497404	5074	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
7245	ENST00000536931.1_1	ENST00000648272.1_7	chr12	18867728	18890812	AC087242.1	+	lncRNA	chr12	18836109	18891034	PLCZ1	-	protein_coding	23084	opposite	2786_ID	chr12	18867729	18890812	23084	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	14
7305	ENST00000540136.1_3	ENST00000538872.6_3	chr12	273829	275487	AC026369.2	-	lncRNA	chr12	175932	287621	IQSEC3	+	protein_coding	1658	opposite	2141_ID	chr12	273830	275487	1658	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	14
7415	ENST00000546678.1_3	ENST00000295095.11_2	chr2	144053154	144329674	AC079793.1	-	lncRNA	chr2	143886987	144525921	ARHGAP15	+	protein_coding	302582	opposite	2678_ID	chr2	144053155	144329674	276520	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	14
7538	ENST00000552220.1_4	ENST00000295095.11_2	chr2	144433733	144498863	AC092652.1	-	lncRNA	chr2	143886987	144525921	ARHGAP15	+	protein_coding	66980	opposite	3114_ID	chr2	144433734	144498863	65130	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	13	14
7609	ENST00000554388.2_3	ENST00000361188.9_5	chr15	91509569	91531855	PRC1-AS1	+	lncRNA	chr15	91509306	91538859	PRC1	-	protein_coding	22286	opposite	9623_ID	chr15	91509570	91531855	22286	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	14
7751	ENST00000558389.1_3	ENST00000268184.11_3	chr15	91139071	91139679	AC103739.1	-	lncRNA	chr15	91073154	91188577	CRTC3	+	protein_coding	608	opposite	3463_ID	chr15	91139072	91139679	608	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
7819	ENST00000559959.1_1	ENST00000668616.1_1	chr15	41635277	41636423	AC087721.1	+	lncRNA	chr15	41576204	41672988	AC087721.2	+	processed_transcript	1146	same	2843_ID	chr15	41635278	41636423	1146	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	14
7846	ENST00000560531.1_3	ENST00000561069.5_3	chr15	29262398	29269667	AC127522.1	-	lncRNA	chr15	29129628	29409920	APBA2	+	protein_coding	7269	opposite	4040_ID	chr15	29262399	29269667	7269	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
7910	ENST00000562166.1_1	ENST00000342085.9_4	chr16	2647881	2649719	AC141586.3	-	lncRNA	chr16	2588021	2653189	PDPK1	+	protein_coding	1838	opposite	4221_ID	chr16	2647882	2649719	1838	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	14	14
7919	ENST00000562393.1_1	ENST00000262424.10_3	chr16	84861868	84862848	AC025280.1	+	lncRNA	chr16	84853590	84943114	CRISPLD2	+	protein_coding	24805	same	2074_ID	chr16	84861869	84862848	980	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
7944	ENST00000562802.1_1	ENST00000434724.7_5	chr16	12002064	12002773	AC007216.2	+	lncRNA	chr16	11961984	12009813	GSPT1	-	protein_coding	709	opposite	523_ID	chr16	12002065	12002773	709	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
7967	ENST00000563090.1_1	ENST00000290649.10_6	chr16	56443231	56445595	AC092140.1	+	lncRNA	chr16	56395363	56459457	AMFR	-	protein_coding	2364	opposite	3061_ID	chr16	56443232	56445595	2364	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	14
8066	ENST00000565137.1_3	ENST00000330498.4_2	chr16	31498690	31499813	AC026471.3	-	lncRNA	chr16	31494443	31502090	SLC5A2	+	protein_coding	1123	opposite	2158_ID	chr16	31498691	31499813	1123	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	14
8089	ENST00000565685.1_3	ENST00000260403.7_2	chr15	43476276	43477339	AC068724.1	-	lncRNA	chr15	43425783	43477342	TMEM62	+	protein_coding	1063	opposite	2435_ID	chr15	43476277	43477339	1063	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	14	14
8103	ENST00000565879.1_3	ENST00000219611.7_2	chr16	597184	603847	Z97986.1	-	lncRNA	chr16	577711	604636	CAPN15	+	protein_coding	6663	opposite	12971_ID	chr16	597185	603847	6663	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	14
8108	ENST00000565943.1_3	ENST00000565295.6_2	chr15	24483291	24485339	AC087463.2	-	lncRNA	chr15	24390509	24812032	PWRN1	+	lncRNA	2048	opposite	2820_ID	chr15	24483292	24485339	2048	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
8123	ENST00000566245.1_3	ENST00000565295.6_2	chr15	24407900	24415021	PWRN2	-	lncRNA	chr15	24390509	24812032	PWRN1	+	lncRNA	7195	opposite	9686_ID	chr15	24407901	24415021	7121	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
8126	ENST00000566291.1_1	ENST00000379887.9_4	chr15	72882031	72884186	AC100827.3	+	lncRNA	chr15	72766670	72895328	ARIH1	+	protein_coding	2155	same	3427_ID	chr15	72882032	72884186	2155	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	14	14
8172	ENST00000567210.1_1	ENST00000637795.2_6	chr8	1316807	1317999	AF067845.1	-	lncRNA	chr8	687627	1656642	DLGAP2	+	protein_coding	1192	opposite	4371_ID	chr8	1316808	1317999	1192	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
8224	ENST00000568324.1_1	ENST00000650526.1_3	chr4	145427051	145430153	AC106871.1	+	lncRNA	chr4	145032191	145792105	AC098588.3	-	lncRNA	3102	opposite	3666_ID	chr4	145427052	145430153	3102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
8234	ENST00000568541.1_1	ENST00000565295.6_2	chr15	24451930	24471001	AC087463.1	+	lncRNA	chr15	24390509	24812032	PWRN1	+	lncRNA	19071	same	2819_ID	chr15	24451931	24471001	19071	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
8235	ENST00000568554.1_1	ENST00000389221.9_7	chr16	1458834	1462249	AL032819.1	+	lncRNA	chr16	1413205	1464705	UNKL	-	protein_coding	3415	opposite	4569_ID	chr16	1458835	1462249	3415	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
8236	ENST00000568556.1_6	ENST00000675579.1_1	chr16	29454590	29465972	BOLA2-SMG1P6	-	nonsense_mediated_decay	chr16	29454237	29625038	AC133555.6	-	lncRNA	11422	same	6429_ID	chr16	29454591	29465972	11382	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	14
8248	ENST00000568836.1_1	ENST00000407106.5_1	chr15	80458264	80459322	AC087761.1	+	lncRNA	chr15	80445121	80479288	FAH	+	protein_coding	1058	same	2851_ID	chr15	80458265	80459322	1058	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	14
8279	ENST00000569852.1_1	ENST00000342085.9_4	chr16	2611471	2615097	AC093525.7	-	lncRNA	chr16	2588021	2653189	PDPK1	+	protein_coding	3626	opposite	3219_ID	chr16	2611472	2615097	3626	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	14
8286	ENST00000570056.2_5	ENST00000567109.6_3	chr16	83754006	83806554	AC009063.2	-	lncRNA	chr16	82660573	83834245	CDH13	+	protein_coding	52573	opposite	853_ID	chr16	83754007	83806554	52548	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	14
8349	ENST00000572923.1_3	ENST00000570827.6_1	chr17	9550336	9550977	AC118755.1	-	lncRNA	chr17	9548014	9632418	USP43	+	processed_transcript	641	opposite	3948_ID	chr17	9550337	9550977	641	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
8494	ENST00000577482.1	ENST00000379789.8_1	chr10	6194158	6194240	MIR3155A	+	miRNA	chr10	6186896	6277495	PFKFB3	+	protein_coding	82	same	8276_ID	chr10	6194159	6194240	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
8496	ENST00000577512.1	ENST00000354185.9_5	chr10	70725771	70726075	RN7SL373P	+	misc_RNA	chr10	70715925	70744824	DDX21	+	protein_coding	304	same	10137_ID	chr10	70725772	70726075	304	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
8593	ENST00000577954.1	ENST00000427335.6_3	chr3	189831722	189832061	RN7SL486P	+	misc_RNA	chr3	189674619	189840226	P3H2	-	protein_coding	339	opposite	10216_ID	chr3	189831723	189832061	339	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
8606	ENST00000578050.1	ENST00000621161.5_3	chr17	29845449	29845745	RN7SL45P	+	misc_RNA	chr17	29718692	29865230	RAB11FIP4	+	protein_coding	296	same	10200_ID	chr17	29845450	29845745	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	14
8653	ENST00000578370.1	ENST00000507958.5_3	chr5	19735618	19735670	AC118463.1	-	miRNA	chr5	19473156	20575982	CDH18	-	protein_coding	52	same	3944_ID	chr5	19735619	19735670	52	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	14
8667	ENST00000578443.1_3	ENST00000304621.10_2	chr18	21656757	21679284	AC090772.2	-	lncRNA	chr18	21572736	21712991	TTC39C	+	protein_coding	22527	opposite	2937_ID	chr18	21656758	21679284	22527	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	14
8684	ENST00000578565.1	ENST00000615572.4_1	chr7	66604057	66604157	AC073089.1	-	miRNA	chr7	66461806	66704506	TYW1	+	protein_coding	100	opposite	2503_ID	chr7	66604058	66604157	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	14
8695	ENST00000578629.1	ENST00000292616.10_2	chr7	102111915	102111978	MIR4467	+	miRNA	chr7	102105430	102113615	LRWD1	+	protein_coding	63	same	8559_ID	chr7	102111916	102111978	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	14
8719	ENST00000578752.1	ENST00000576629.5_1	chr17	44614899	44615180	RN7SL199P	+	misc_RNA	chr17	44588876	44633016	LRRC37A2	+	protein_coding	281	same	10013_ID	chr17	44614900	44615180	281	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	14
8748	ENST00000578936.1_3	ENST00000634540.1_2	chr17	43809068	43810343	AC217774.1	-	lncRNA	chr17	43697709	43913192	LINC02210-CRHR1	+	protein_coding	1275	opposite	4251_ID	chr17	43809069	43810343	1275	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
8773	ENST00000579075.1	ENST00000615572.4_1	chr7	66579308	66579384	MIR4650-1	-	miRNA	chr7	66461806	66704506	TYW1	+	protein_coding	76	opposite	8636_ID	chr7	66579309	66579384	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	14
8786	ENST00000579154.1_1	ENST00000332830.9_5	chr17	27271813	27272412	AC024267.5	+	lncRNA	chr17	27232267	27278536	PHF12	-	protein_coding	599	opposite	2007_ID	chr17	27271814	27272412	599	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
8795	ENST00000579212.1	ENST00000676785.1_1	chr17	62497331	62497431	MIR5047	-	miRNA	chr17	62494375	62503830	DDX5	-	protein_coding	100	same	8821_ID	chr17	62497332	62497431	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
8799	ENST00000579234.1	ENST00000449247.6_4	chr2	86420148	86420231	MIR4779	-	miRNA	chr2	86371054	86422595	IMMT	-	protein_coding	83	same	8766_ID	chr2	86420149	86420231	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
8844	ENST00000579518.1	ENST00000447733.5_1	chr22	35731632	35731751	MIR3909	+	miRNA	chr22	35695267	35743985	TOM1	+	protein_coding	119	same	8414_ID	chr22	35731633	35731751	119	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	14
8914	ENST00000579897.1_3	ENST00000461366.2_2	chr17	19315098	19316431	AC004448.3	-	lncRNA	chr17	19314544	19320589	RNF112	+	protein_coding	1333	opposite	127_ID	chr17	19315099	19316431	1333	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	14
8927	ENST00000579962.1	ENST00000375494.3_1	chr20	31645393	31645476	AL121756.1	-	miRNA	chr20	31643229	31661434	BPIFB3	+	protein_coding	83	opposite	4744_ID	chr20	31645394	31645476	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
8935	ENST00000579998.1	ENST00000367590.9_2	chr1	180797030	180797128	AL590085.1	-	miRNA	chr1	180601157	180859415	XPR1	+	protein_coding	98	opposite	5750_ID	chr1	180797031	180797128	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	14
8989	ENST00000580347.1_3	ENST00000634540.1_2	chr17	43810718	43812035	AC217774.2	-	lncRNA	chr17	43697709	43913192	LINC02210-CRHR1	+	protein_coding	1317	opposite	4252_ID	chr17	43810719	43812035	1317	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
9121	ENST00000580975.1_1	ENST00000269142.10_3	chr18	23845972	23847373	AC121320.1	+	lncRNA	chr18	23806408	23971649	TAF4B	+	protein_coding	1401	same	3968_ID	chr18	23845973	23847373	1401	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
9125	ENST00000581015.1	ENST00000551590.5_1	chr12	111063451	111063722	RN7SL387P	-	misc_RNA	chr12	111051831	111087235	TCTN1	+	protein_coding	271	opposite	10148_ID	chr12	111063452	111063722	271	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
9144	ENST00000581119.1	ENST00000301740.13_3	chr16	2819872	2819950	AC092117.2	+	miRNA	chr16	2802638	2821413	SRRM2	+	protein_coding	78	same	3051_ID	chr16	2819873	2819950	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	14
9166	ENST00000581279.1	ENST00000389221.9_7	chr16	1429289	1429424	AL031721.1	-	miRNA	chr16	1413205	1464705	UNKL	-	protein_coding	135	same	4553_ID	chr16	1429290	1429424	135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	14
9177	ENST00000581357.1	ENST00000355387.6_1	chr1	45011164	45011224	MIR5584	+	miRNA	chr1	44870865	45117395	RNF220	+	protein_coding	60	same	8937_ID	chr1	45011165	45011224	60	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
9268	ENST00000581896.1	ENST00000393547.6_1	chr17	42796231	42796498	RN7SL819P	-	misc_RNA	chr17	42785975	42829632	DBF4B	+	protein_coding	267	opposite	10458_ID	chr17	42796232	42796498	267	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
9316	ENST00000582167.1	ENST00000376091.8_4	chrX	49771261	49771344	AF222686.1	+	miRNA	chrX	49687205	49863887	CLCN5	+	protein_coding	83	same	4401_ID	chrX	49771262	49771344	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
9337	ENST00000582246.1_1	ENST00000584709.5_3	chr17	46263299	46281891	SKAP1-AS1	+	lncRNA	chr17	46210806	46507637	SKAP1	-	nonsense_mediated_decay	18592	opposite	12068_ID	chr17	46263300	46281891	18592	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	14
9474	ENST00000583004.1	ENST00000641051.1_5	chr4	87463634	87463705	MIR4452	-	miRNA	chr4	86935026	87515778	MAPK10	-	protein_coding	71	same	8552_ID	chr4	87463635	87463705	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
9485	ENST00000583067.1_1	ENST00000225737.11_4	chr17	19832684	19833050	AC005730.3	-	lncRNA	chr17	19807614	19881141	AKAP10	-	protein_coding	366	same	347_ID	chr17	19832685	19833050	366	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	14
9537	ENST00000583345.1	ENST00000370597.8_7	chr10	99635568	99635654	AL139239.1	-	miRNA	chr10	99624756	99790378	CRTAC1	-	protein_coding	86	same	5019_ID	chr10	99635569	99635654	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	14
9581	ENST00000583613.1	ENST00000342056.6_3	chr6	73677409	73677476	MIR4282	-	miRNA	chr6	73331519	73908571	KCNQ5	+	protein_coding	67	opposite	8478_ID	chr6	73677410	73677476	67	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
9615	ENST00000583782.1_3	ENST00000304621.10_2	chr18	21693600	21700967	AC090772.1	-	lncRNA	chr18	21572736	21712991	TTC39C	+	protein_coding	7367	opposite	2936_ID	chr18	21693601	21700967	7367	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	14
9646	ENST00000583980.1_1	ENST00000580155.5_4	chr17	77128803	77132484	AC021534.1	+	lncRNA	chr17	77086897	77512230	RBFOX3	-	protein_coding	3681	opposite	1794_ID	chr17	77128804	77132484	3681	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	14
9737	ENST00000584468.1	ENST00000253048.10_5	chr19	47582187	47582450	RN7SL533P	+	misc_RNA	chr19	47567443	47617033	ZC3H4	-	protein_coding	263	opposite	10255_ID	chr19	47582188	47582450	263	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	14
9797	ENST00000584820.1	ENST00000264870.8_3	chr6	6169566	6169642	MIR5683	+	miRNA	chr6	6144316	6320895	F13A1	-	protein_coding	76	opposite	8955_ID	chr6	6169567	6169642	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	14
9831	ENST00000585012.1	ENST00000311502.12_3	chr9	139725408	139725475	MIR4292	+	miRNA	chr9	139702399	139735639	RABL6	+	protein_coding	67	same	8487_ID	chr9	139725409	139725475	67	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
9858	ENST00000585167.1_3	ENST00000311014.11_3	chr17	72303348	72305929	AC103809.1	-	lncRNA	chr17	72270372	72311023	DNAI2	+	protein_coding	2581	opposite	3470_ID	chr17	72303349	72305929	2581	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	14
9968	ENST00000587348.1_1	ENST00000293217.10_8	chr17	73939912	73941223	AC087289.4	+	lncRNA	chr17	73937587	73975247	ACOX1	-	protein_coding	1311	opposite	2802_ID	chr17	73939913	73941223	1311	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	14	14
10090	ENST00000591533.1_1	ENST00000264819.6_3	chr19	305572	306467	AC016588.1	+	lncRNA	chr19	301443	344782	MIER2	-	protein_coding	895	opposite	1538_ID	chr19	305573	306467	895	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	14	14
10119	ENST00000592636.1_1	ENST00000588025.5_3	chr19	13041335	13044110	FARSA-AS1	+	lncRNA	chr19	13033292	13044851	FARSA	-	protein_coding	2775	opposite	7003_ID	chr19	13041336	13044110	2775	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	14
10160	ENST00000594056.1_3	ENST00000600428.5_1	chr19	6748303	6751478	AC008760.1	-	lncRNA	chr19	6737935	6751511	TRIP10	+	protein_coding	3175	opposite	802_ID	chr19	6748304	6751478	3175	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	14
10451	ENST00000602422.1_1	ENST00000348520.10_2	chr14	104162689	104163500	AL049840.5	+	lncRNA	chr14	104095513	104180586	KLC1	+	protein_coding	811	same	4648_ID	chr14	104162690	104163500	811	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
10482	ENST00000602669.1_1	ENST00000348520.10_2	chr14	104160896	104161507	AL049840.4	+	lncRNA	chr14	104095513	104180586	KLC1	+	protein_coding	611	same	4647_ID	chr14	104160897	104161507	611	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
10486	ENST00000602704.1_1	ENST00000467460.6_5	chr3	179521850	179522154	AC007687.1	+	lncRNA	chr3	179512745	179754725	PEX5L	-	protein_coding	304	opposite	638_ID	chr3	179521851	179522154	304	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	14
10490	ENST00000602722.1_1	ENST00000348520.10_2	chr14	104160852	104161387	AL049840.3	-	lncRNA	chr14	104095513	104180586	KLC1	+	protein_coding	535	opposite	4646_ID	chr14	104160853	104161387	535	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
10507	ENST00000602827.1_1	ENST00000348520.10_2	chr14	104153912	104154464	AL049840.6	+	lncRNA	chr14	104095513	104180586	KLC1	+	protein_coding	552	same	4649_ID	chr14	104153913	104154464	552	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
10623	ENST00000605147.1_1	ENST00000281708.10_6	chr4	153258806	153259250	FBXW7-AS1	+	lncRNA	chr4	153241695	153457244	FBXW7	-	protein_coding	444	opposite	7010_ID	chr4	153258807	153259250	444	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	14
10696	ENST00000606349.1	ENST00000376091.8_4	chrX	49779205	49779291	MIR502	+	miRNA	chrX	49687205	49863887	CLCN5	+	protein_coding	86	same	8818_ID	chrX	49779206	49779291	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
10756	ENST00000606907.1_3	ENST00000272238.9_4	chr2	10908000	10910184	AC092687.3	-	lncRNA	chr2	10861755	10925236	ATP6V1C2	+	protein_coding	2184	opposite	3122_ID	chr2	10908001	10910184	2184	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	14
10843	ENST00000607697.1	ENST00000344683.10_3	chr8	6503575	6506025	CTD-2541M15.4	+	lincRNA	chr8	6264147	6506029	MCPH1	+	protein_coding	2450	same	6739_ID	chr8	6503576	6506025	2450	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	14	14
10848	ENST00000607707.1	ENST00000264279.10_2	chr2	203156054	203156144	SNORD11B	+	snoRNA	chr2	203130485	203168384	NOP58	+	protein_coding	90	same	12360_ID	chr2	203156055	203156144	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	14
10854	ENST00000607800.1	ENST00000354216.11_4	chr20	62572817	62572897	MIR1914	-	miRNA	chr20	62571181	62587769	UCKL1	-	protein_coding	80	same	8145_ID	chr20	62572818	62572897	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	14
10865	ENST00000607902.1_1	ENST00000392811.6_5	chr7	150937484	150938058	AC021097.1	+	lncRNA	chr7	150936058	150974538	SMARCD3	-	protein_coding	574	opposite	1779_ID	chr7	150937485	150938058	574	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	14
10899	ENST00000608195.1_1	ENST00000222823.9_4	chr7	30464287	30465028	AC006027.1	+	lncRNA	chr7	30464142	30518400	NOD1	-	protein_coding	741	opposite	400_ID	chr7	30464288	30465028	741	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	14	14
10924	ENST00000608459.2_1	ENST00000301364.10_3	chr17	2232309	2232531	SNORD91B	-	snoRNA	chr17	2225689	2239751	TSR1	-	protein_coding	222	same	12462_ID	chr17	2232310	2232531	222	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	14
10950	ENST00000608818.1_1	ENST00000450518.6_2	chr3	179301049	179301550	AC090425.3	-	lncRNA	chr3	179280673	179306195	ACTL6A	+	protein_coding	501	opposite	2894_ID	chr3	179301050	179301550	501	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	14
10952	ENST00000608883.1_1	ENST00000264977.8_4	chr3	135806316	135806755	AC072039.2	-	lncRNA	chr3	135684569	135866736	PPP2R3A	+	protein_coding	439	opposite	2498_ID	chr3	135806317	135806755	439	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	14
10978	ENST00000609190.1_1	ENST00000490337.6_3	chr3	156241528	156242036	AC084036.1	-	lncRNA	chr3	155838366	156256394	KCNAB1	+	protein_coding	508	opposite	2733_ID	chr3	156241529	156242036	508	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	14
10988	ENST00000609279.1_1	ENST00000355630.10_6	chr22	40811006	40811449	AL022238.2	+	lncRNA	chr22	40806292	41032723	MRTFA	-	protein_coding	443	opposite	4472_ID	chr22	40811007	40811449	443	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	14
10997	ENST00000609424.1_1	ENST00000517570.5_3	chr18	8801653	8802303	AP000864.1	+	lncRNA	chr18	8707408	8832775	MTCL1	+	protein_coding	650	same	6039_ID	chr18	8801654	8802303	650	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	14
11019	ENST00000609620.2_1	ENST00000301364.10_3	chr17	2233473	2233664	SNORD91A	-	snoRNA	chr17	2225689	2239751	TSR1	-	protein_coding	191	same	12461_ID	chr17	2233474	2233664	191	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	14
11024	ENST00000609691.1_1	ENST00000369774.8_5	chr10	105368375	105369807	AL121929.2	+	lncRNA	chr10	105353783	105615301	SH3PXD2A	-	protein_coding	1432	opposite	4777_ID	chr10	105368376	105369807	1432	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
11053	ENST00000609955.1_1	ENST00000406334.3_3	chr2	68406964	68407664	AC017083.2	+	lncRNA	chr2	68358369	68488362	AC017083.3	-	nonsense_mediated_decay	700	opposite	1608_ID	chr2	68406965	68407664	700	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	14
11094	ENST00000610350.3_3	ENST00000330458.7	chr17	34746118	34756993	TBC1D3H	-	protein_coding	chr17	34745935	34808103	TBC1D3G	-	protein_coding	10875	same	12635_ID	chr17	34746119	34756993	10875	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	14	14
11162	ENST00000612025.1_1	ENST00000585873.5_1	chr18	60193151	60193558	AC064801.1	-	lncRNA	chr18	60190899	60253962	ZCCHC2	+	nonsense_mediated_decay	407	opposite	2359_ID	chr18	60193152	60193558	407	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
11163	ENST00000612081.1_1	ENST00000261326.6_2	chr18	33769786	33770235	AC023043.4	+	lncRNA	chr18	33767459	33852120	MOCOS	+	protein_coding	449	same	1928_ID	chr18	33769787	33770235	449	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
11185	ENST00000612793.1_1	ENST00000544838.5_1	chr12	110386193	110386834	AC084876.1	+	lncRNA	chr12	110338078	110391074	TCHP	+	nonsense_mediated_decay	641	same	2775_ID	chr12	110386194	110386834	641	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	14
11189	ENST00000612818.1_1	ENST00000326495.10_4	chr12	109227496	109228160	AC087893.2	-	lncRNA	chr12	109171966	109251359	SSH1	-	protein_coding	664	same	2857_ID	chr12	109227497	109228160	664	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
11333	ENST00000616106.1_1	ENST00000312060.9_2	chr16	88775363	88776845	AC138028.6	-	lncRNA	chr16	88772890	88781794	CTU2	+	protein_coding	1482	opposite	4176_ID	chr16	88775364	88776845	1482	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	14
11372	ENST00000616999.1_1	ENST00000356218.8_3	chr14	52104065	52104665	AL122125.1	-	lncRNA	chr14	51955854	52197177	FRMD6	+	protein_coding	600	opposite	4804_ID	chr14	52104066	52104665	600	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
11374	ENST00000617093.1_3	ENST00000637795.2_6	chr8	1244293	1250766	AF067845.2	-	lncRNA	chr8	687627	1656642	DLGAP2	+	protein_coding	6473	opposite	4372_ID	chr8	1244294	1250766	6473	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
11379	ENST00000617151.1_2	ENST00000356218.8_3	chr14	52116233	52118462	FRMD6-AS1	-	lncRNA	chr14	51955854	52197177	FRMD6	+	protein_coding	2229	opposite	7081_ID	chr14	52116234	52118462	2229	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
11409	ENST00000617969.1_2	ENST00000338110.10_3	chr16	30075626	30076146	AC093512.1	-	lncRNA	chr16	30064410	30081741	AC093512.2	+	protein_coding	520	opposite	3212_ID	chr16	30075627	30076146	520	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	6	14
11446	ENST00000619159.1_1	ENST00000561482.5_2	chr16	29815750	29816311	AC009133.4	-	lncRNA	chr16	29802039	29816705	KIF22	+	protein_coding	561	opposite	898_ID	chr16	29815751	29816311	561	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	14
11458	ENST00000619452.1_1	ENST00000261739.9_2	chr12	110470049	110470608	AC007546.1	+	lncRNA	chr12	110437234	110477568	ANKRD13A	+	protein_coding	559	same	594_ID	chr12	110470050	110470608	559	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	14
11469	ENST00000619646.1_1	ENST00000559488.7_3	chr17	45356891	45357413	AC068234.2	-	lncRNA	chr17	45331192	45391109	ITGB3	+	protein_coding	522	opposite	2397_ID	chr17	45356892	45357413	522	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
11472	ENST00000619654.1_3	ENST00000319580.13_6	chr15	65243130	65243670	AC103691.1	-	lncRNA	chr15	65204100	65251033	ANKDD1A	+	protein_coding	540	opposite	3455_ID	chr15	65243131	65243670	540	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	14
11479	ENST00000619697.1_1	ENST00000643255.1_3	chr17	38804551	38805970	AC073508.3	+	lncRNA	chr17	38783607	38821387	AC073508.2	-	nonsense_mediated_decay	1419	opposite	2529_ID	chr17	38804552	38805970	1419	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	14
11582	ENST00000621825.1_1	ENST00000609686.4_3	chr12	13693164	13697474	AC007527.2	+	lncRNA	chr12	13690270	14134536	GRIN2B	-	protein_coding	4310	opposite	586_ID	chr12	13693165	13697474	4310	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	14	14
11604	ENST00000622206.1_3	ENST00000330458.7	chr17	34746235	34756991	TBC1D3C	-	protein_coding	chr17	34745935	34808103	TBC1D3G	-	protein_coding	10756	same	12631_ID	chr17	34746236	34756991	10756	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	14	14
11613	ENST00000622357.5_4	ENST00000643029.1_7	chr9	130647599	130667609	ST6GALNAC6	-	protein_coding	chr9	130630128	130668301	AL157935.2	-	nonsense_mediated_decay	20088	same	12559_ID	chr9	130647600	130667609	20010	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	14
11641	ENST00000623239.1_1	ENST00000406486.8_2	chr22	25444933	25447933	AL022323.1	-	lncRNA	chr22	25348696	25590424	KIAA1671	+	protein_coding	3000	opposite	4477_ID	chr22	25444934	25447933	3000	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	14
11666	ENST00000623888.1_1	ENST00000406486.8_2	chr22	25405651	25411039	AL022323.2	-	lncRNA	chr22	25348696	25590424	KIAA1671	+	protein_coding	5388	opposite	4478_ID	chr22	25405652	25411039	5388	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	14
11690	ENST00000624327.1_1	ENST00000624829.4_4	chr16	72463251	72567791	AC004158.1	+	lncRNA	chr16	72316106	72698846	LINC01572	-	lncRNA	107945	opposite	107_ID	chr16	72463252	72567791	104540	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	14
11712	ENST00000624919.1_1	ENST00000406477.7_1	chr22	44535244	44549506	AL031595.3	+	lncRNA	chr22	44395090	44564803	PARVB	+	protein_coding	14262	same	4526_ID	chr22	44535245	44549506	14262	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	14
11756	ENST00000627886.2_1	ENST00000369774.8_5	chr10	105505723	105515181	SH3PXD2A-AS1	+	lncRNA	chr10	105353783	105615301	SH3PXD2A	-	protein_coding	9458	opposite	12057_ID	chr10	105505724	105515181	9458	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
11775	ENST00000629416.2_4	ENST00000635992.1_1	chr3	29567741	29684283	RBMS3-AS2	-	lncRNA	chr3	28390668	29809028	AC098650.1	+	nonsense_mediated_decay	116559	opposite	9717_ID	chr3	29567742	29684283	116542	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	14
11797	ENST00000630806.1_3	ENST00000469372.5_2	chr6	31902250	31909501	C2-AS1	-	lncRNA	chr6	31865561	31913298	C2	+	protein_coding	7251	opposite	6501_ID	chr6	31902251	31909501	7251	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	14
11805	ENST00000631653.1_1	ENST00000637795.2_6	chr8	688547	690374	AC100797.4	+	lncRNA	chr8	687627	1656642	DLGAP2	+	protein_coding	1827	same	3419_ID	chr8	688548	690374	1827	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
11815	ENST00000633198.1_1	ENST00000637795.2_6	chr8	1326032	1328473	AF067845.4	+	lncRNA	chr8	687627	1656642	DLGAP2	+	protein_coding	2441	same	4373_ID	chr8	1326033	1328473	2441	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
11816	ENST00000633456.1_3	ENST00000637795.2_6	chr8	841250	843112	AC026950.2	-	lncRNA	chr8	687627	1656642	DLGAP2	+	protein_coding	1862	opposite	2179_ID	chr8	841251	843112	1862	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
11820	ENST00000633906.1_1	ENST00000637795.2_6	chr8	1321850	1329560	AF067845.5	+	lncRNA	chr8	687627	1656642	DLGAP2	+	protein_coding	7710	same	4375_ID	chr8	1321851	1329560	7710	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
11822	ENST00000634128.1_1	ENST00000637795.2_6	chr8	968756	969704	AC129915.3	+	lncRNA	chr8	687627	1656642	DLGAP2	+	protein_coding	948	same	4055_ID	chr8	968757	969704	948	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
11823	ENST00000634300.1_3	ENST00000486442.6_2	chr2	23890077	23908323	AC009242.1	-	lncRNA	chr2	23608049	23931476	KLHL29	+	protein_coding	18246	opposite	928_ID	chr2	23890078	23908323	18246	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	14
11865	ENST00000636587.1_3	ENST00000638115.1_3	chr3	49454230	49460026	AMT	-	retained_intron	chr3	49454209	49466747	AC104452.1	-	nonsense_mediated_decay	5908	same	5940_ID	chr3	49454231	49460026	5796	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	14
11871	ENST00000636913.1_1	ENST00000396573.6_3	chr16	9888493	9899428	AC007218.2	+	lncRNA	chr16	9847260	10276611	GRIN2A	-	protein_coding	10935	opposite	526_ID	chr16	9888494	9899428	10935	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	14
12019	ENST00000647616.1_3	ENST00000263932.7_2	chr1	12148497	12152321	AL357835.1	-	lncRNA	chr1	12123359	12204264	TNFRSF8	+	protein_coding	3824	opposite	5435_ID	chr1	12148498	12152321	3824	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
12047	ENST00000648196.1_3	ENST00000268184.11_3	chr15	91173766	91174987	AC103739.3	-	lncRNA	chr15	91073154	91188577	CRTC3	+	protein_coding	1221	opposite	3466_ID	chr15	91173767	91174987	1221	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	14
12077	ENST00000648546.2_2	ENST00000651136.1_1	chr15	25093501	25097400	AC090983.1	+	lncRNA	chr15	24803206	25158071	AC090983.2	+	lncRNA	3899	same	2964_ID	chr15	25093502	25097400	3899	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
12155	ENST00000649946.1_1	ENST00000376438.5_3	chr9	85887194	85891779	AL137847.2	+	lncRNA	chr9	85857904	86153461	FRMD3	-	protein_coding	7220	opposite	4960_ID	chr9	85887195	85891779	4585	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
12159	ENST00000650052.2_3	ENST00000424491.5_1	chr2	99758169	99768132	C2orf15	+	protein_coding	chr2	99757947	99939196	AC079447.1	+	nonsense_mediated_decay	9963	same	6508_ID	chr2	99758170	99768132	9963	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	14
12198	ENST00000650913.1_1	ENST00000333602.14_8	chr3	195627856	195630288	AC124944.3	+	lncRNA	chr3	195590234	195636673	TNK2	-	protein_coding	2432	opposite	4014_ID	chr3	195627857	195630288	2432	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
12248	ENST00000651960.1_1	ENST00000540844.5_3	chr21	30435766	30436689	AF129075.3	+	lncRNA	chr21	30428642	30446118	CCT8	-	protein_coding	923	opposite	4389_ID	chr21	30435767	30436689	923	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	14
12273	ENST00000652475.1_1	ENST00000507958.5_3	chr5	20305816	20348081	CDH18-AS1	+	lncRNA	chr5	19473156	20575982	CDH18	-	protein_coding	42408	opposite	6600_ID	chr5	20305817	20348081	42265	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
12303	ENST00000652952.1_1	ENST00000435564.5_4	chr2	183143410	183147479	AC012500.1	+	lncRNA	chr2	183004762	183387304	PDE1A	-	protein_coding	4069	opposite	1395_ID	chr2	183143411	183147479	4069	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
12341	ENST00000654072.1_1	ENST00000354366.8_4	chr14	90757859	90761286	AL161662.1	+	lncRNA	chr14	90734203	90798285	NRDE2	-	protein_coding	3427	opposite	5153_ID	chr14	90757860	90761286	3427	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	14
12355	ENST00000654460.1_1	ENST00000403283.5_3	chr2	241497505	241498342	AC124862.1	+	lncRNA	chr2	241418843	241500527	ANKMY1	-	protein_coding	837	opposite	4013_ID	chr2	241497506	241498342	837	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
12368	ENST00000654891.1_1	ENST00000464839.5_3	chr1	89594114	89610378	AC104459.1	+	lncRNA	chr1	89571814	89616139	GBP2	-	nonsense_mediated_decay	16264	opposite	3538_ID	chr1	89594115	89610378	16264	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
12392	ENST00000655254.1_1	ENST00000530562.5_3	chr11	74642768	74647982	AP001992.2	+	lncRNA	chr11	74518783	74660225	XRRA1	-	nonsense_mediated_decay	5214	opposite	6175_ID	chr11	74642769	74647982	5214	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	14
12413	ENST00000655701.1_4	ENST00000635992.1_1	chr3	29096060	29321506	RBMS3-AS3	-	lncRNA	chr3	28390668	29809028	AC098650.1	+	nonsense_mediated_decay	236157	opposite	9720_ID	chr3	29096061	29321506	225446	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	14
12438	ENST00000656148.1_1	ENST00000479633.2_3	chr10	98955663	98963478	AL512424.1	+	lncRNA	chr10	98912802	99052394	ARHGAP19-SLIT1	-	nonsense_mediated_decay	7815	opposite	5684_ID	chr10	98955664	98963478	7815	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	14
12490	ENST00000657264.1_1	ENST00000396170.5_4	chr11	18783210	18786512	AC103974.2	+	lncRNA	chr11	18749476	18814268	PTPN5	-	protein_coding	3302	opposite	3492_ID	chr11	18783211	18786512	3302	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
12525	ENST00000657958.1_3	ENST00000643584.1_3	chr13	48520187	48530965	AL157369.1	+	lncRNA	chr13	48319870	48575427	SUCLA2	-	nonsense_mediated_decay	10778	opposite	5053_ID	chr13	48520188	48530965	10778	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	14
12619	ENST00000659521.1_1	ENST00000368488.9_4	chr6	118886822	118898003	Z99496.1	+	lncRNA	chr6	118781943	119031238	CEP85L	-	protein_coding	11181	opposite	12988_ID	chr6	118886823	118898003	11181	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	14
12681	ENST00000660998.1_1	ENST00000382254.6_5	chr5	22755124	22766933	AC091938.1	+	lncRNA	chr5	21750781	22853453	CDH12	-	protein_coding	12598	opposite	3021_ID	chr5	22755125	22766933	11809	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
12823	ENST00000664060.1_3	ENST00000264758.11_3	chr4	2861709	2864400	AL121750.1	-	lncRNA	chr4	2845583	2931800	ADD1	+	protein_coding	2691	opposite	4743_ID	chr4	2861710	2864400	2691	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
12832	ENST00000664206.1_3	ENST00000565295.6_2	chr15	24586875	24588611	AC087463.3	-	lncRNA	chr15	24390509	24812032	PWRN1	+	lncRNA	1736	opposite	2821_ID	chr15	24586876	24588611	1736	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
12837	ENST00000664362.1_3	ENST00000380050.8_3	chr7	90659463	90663040	AC002458.1	-	lncRNA	chr7	90225634	90839905	CDK14	+	protein_coding	3577	opposite	53_ID	chr7	90659464	90663040	3577	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	14
12847	ENST00000664583.1_1	ENST00000267890.11_7	chr15	43041278	43042134	AC090510.4	+	lncRNA	chr15	43030927	43212976	TTBK2	-	protein_coding	856	opposite	2900_ID	chr15	43041279	43042134	856	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	14
12873	ENST00000665043.1_1	ENST00000394440.8_4	chr2	62106074	62108488	AC107081.3	+	lncRNA	chr2	62095219	62115791	CCT4	-	protein_coding	2414	opposite	3685_ID	chr2	62106075	62108488	2414	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	14
12976	ENST00000667363.1_3	ENST00000477474.3_2	chr4	26861427	26862254	STIM2-AS1	-	lncRNA	chr4	26859222	27025569	STIM2	+	nonsense_mediated_decay	827	opposite	12568_ID	chr4	26861428	26862254	827	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
12977	ENST00000667388.1_1	ENST00000315392.9_5	chr17	37243228	37248195	AC091178.2	+	lncRNA	chr17	37219565	37307890	PLXDC1	-	protein_coding	4967	opposite	2991_ID	chr17	37243229	37248195	4967	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	14
13203	ENST00000675098.1_1	ENST00000676107.1_1	chr6	52906063	52906183	AL031178.1	-	protein_coding	chr6	52866100	52926622	CILK1	-	protein_coding	120	same	4508_ID	chr6	52906064	52906183	120	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	2	14
15431	ENST00000375826.4_4	ENST00000483270.1_1	chr1	15898193	15911546	AGMAT	-	protein_coding	chr1	15886102	15918874	DNAJC16	+	processed_transcript	13353	opposite	4417_ID	chr1	15898194	15911546	13353	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	14
23711	ENST00000390897.1	ENST00000356920.9_1	chr2	131987179	131987286	RNU6-127P	+	snRNA	chr2	131975639	132022851	POTEE	+	protein_coding	107	same	10972_ID	chr2	131987180	131987286	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
24271	ENST00000391139.1	ENST00000377601.3_2	chr9	42378940	42379047	RNU6-1269P	+	snRNA	chr9	42368336	42411863	ANKRD20A2P	+	protein_coding	107	same	10962_ID	chr9	42378941	42379047	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
29171	ENST00000408735.1	ENST00000375341.8_4	chr1	19223564	19223642	MIR1290	-	miRNA	chr1	19197923	19229049	ALDH4A1	-	protein_coding	78	same	8056_ID	chr1	19223565	19223642	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
37271	ENST00000422761.1_3	ENST00000234396.10_3	chr2	71168956	71175740	ATP6V1B1-AS1	-	lncRNA	chr2	71163029	71192561	ATP6V1B1	+	protein_coding	6794	opposite	6381_ID	chr2	71168957	71175740	6784	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	14
39961	ENST00000430733.1_3	ENST00000424834.6_3	chr13	24826886	24828577	SPATA13-AS1	-	lncRNA	chr13	24553943	24881207	SPATA13	+	protein_coding	1691	opposite	12509_ID	chr13	24826887	24828577	1691	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	14
47891	ENST00000453180.5_3	ENST00000454872.6_3	chr3	174797096	174833032	NAALADL2-AS3	-	lncRNA	chr3	174577123	175528336	NAALADL2	+	protein_coding	35936	opposite	9220_ID	chr3	174797097	174833032	35936	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	14
65401	ENST00000516886.1	ENST00000424834.6_3	chr13	24736554	24736643	MIR2276	+	miRNA	chr13	24553943	24881207	SPATA13	+	protein_coding	89	same	8196_ID	chr13	24736555	24736643	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	14
82041	ENST00000567925.1_1	ENST00000637084.1_3	chr11	68870960	68876562	AP003071.1	+	lncRNA	chr11	68840382	68929908	AP003071.5	+	nonsense_mediated_decay	5602	same	6234_ID	chr11	68870961	68876562	5602	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
82171	ENST00000568144.1_1	ENST00000434724.7_5	chr16	11974931	11976426	AC007216.3	-	lncRNA	chr16	11961984	12009813	GSPT1	-	protein_coding	1495	same	524_ID	chr16	11974932	11976426	1495	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	14
84651	ENST00000577305.1	ENST00000375341.8_4	chr1	19209695	19209769	MIR4695	-	miRNA	chr1	19197923	19229049	ALDH4A1	-	protein_coding	74	same	8682_ID	chr1	19209696	19209769	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	14
91601	ENST00000581178.1	ENST00000637084.1_3	chr11	68850643	68850726	MIR3164	+	miRNA	chr11	68840382	68929908	AP003071.5	+	nonsense_mediated_decay	83	same	8287_ID	chr11	68850644	68850726	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	14
102521	ENST00000596731.7_6	ENST00000648033.1_3	chr19	12778886	12780229	WDR83OS	-	protein_coding	chr19	12778884	12792648	AC010422.8	-	nonsense_mediated_decay	1343	same	12908_ID	chr19	12778887	12780229	1343	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	14
103171	ENST00000598376.1_3	ENST00000396720.7_1	chr19	48118955	48129652	BICRA-AS1	-	lncRNA	chr19	48111452	48206534	BICRA	+	protein_coding	10697	opposite	6417_ID	chr19	48118956	48129652	10697	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
103881	ENST00000600694.1_4	ENST00000648033.1_3	chr19	12780892	12781837	AC010422.7	-	lncRNA	chr19	12778884	12792648	AC010422.8	-	nonsense_mediated_decay	945	same	1076_ID	chr19	12780893	12781837	945	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	14
116141	ENST00000622206.1_3	ENST00000610350.3_3	chr17	34746235	34756991	TBC1D3C	-	protein_coding	chr17	34746118	34756993	TBC1D3H	-	protein_coding	10756	same	12632_ID	chr17	34746236	34756991	10756	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	14
115	ENST00000253107.12_5	ENST00000428358.5_4	chr19	10217037	10222688	PPAN	+	protein_coding	chr19	10216898	10225456	PPAN-P2RY11	+	protein_coding	5651	same	9608_ID	chr19	10217038	10222688	5651	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	13
118	ENST00000253719.7_4	ENST00000593532.5_1	chr19	50861733	50868896	NAPSA	-	protein_coding	chr19	50832948	50886236	NR1H2	+	nonsense_mediated_decay	7354	opposite	9226_ID	chr19	50861734	50868896	7163	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
120	ENST00000253838.3_3	ENST00000446299.5_1	chrY	24585739	24587605	TTTY6	-	lncRNA	chrY	24585086	24630861	AC008175.1	+	lncRNA	1866	opposite	12818_ID	chrY	24585740	24587605	1866	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	13
121	ENST00000253848.3_1	ENST00000419158.1_3	chrY	24291112	24292978	TTTY6B	+	lncRNA	chrY	24247838	24293631	AC007359.1	-	lncRNA	1866	opposite	12819_ID	chrY	24291113	24292978	1866	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	13
151	ENST00000259006.8_5	ENST00000640870.1_3	chr17	61773247	61777485	LIMD2	-	protein_coding	chr17	61759695	61819205	STRADA	-	nonsense_mediated_decay	5285	same	7525_ID	chr17	61773248	61777485	4238	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
179	ENST00000266085.7_2	ENST00000358763.7_3	chr22	33197690	33259028	TIMP3	+	protein_coding	chr22	32903806	33454367	SYN3	-	protein_coding	61338	opposite	12700_ID	chr22	33197691	33259028	61338	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
194	ENST00000270824.1_3	ENST00000505871.7_3	chr1	36787631	36789755	EVA1B	-	protein_coding	chr1	36772710	36790578	SH3D21	+	protein_coding	2124	opposite	6941_ID	chr1	36787632	36789755	2124	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	13	13
290	ENST00000295927.4_2	ENST00000362010.7_6	chr3	157154638	157161422	PTX3	+	protein_coding	chr3	156977530	157221205	VEPH1	-	protein_coding	6784	opposite	9684_ID	chr3	157154639	157161422	6784	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
301	ENST00000297283.4_4	ENST00000448521.6_4	chr7	44102325	44105166	PGAM2	-	protein_coding	chr7	44084300	44109055	DBNL	+	protein_coding	2841	opposite	9540_ID	chr7	44102326	44105166	2841	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	13	13
381	ENST00000309384.2_3	ENST00000543812.5_3	chr12	10559980	10562356	KLRC4	-	protein_coding	chr12	10525589	10562745	KLRC4-KLRK1	-	nonsense_mediated_decay	2376	same	7461_ID	chr12	10559981	10562356	2376	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	13
432	ENST00000315997.5_3	ENST00000650085.1_1	chr16	5094122	5116111	C16orf89	-	protein_coding	chr16	5083923	5135533	ALG1	+	processed_transcript	21989	opposite	6481_ID	chr16	5094123	5116111	21989	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
454	ENST00000319331.4_2	ENST00000448413.5_3	chr3	3841114	3891518	LRRN1	+	protein_coding	chr3	3823035	4508945	SUMF1	-	nonsense_mediated_decay	50404	opposite	7870_ID	chr3	3841115	3891518	50404	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	13
551	ENST00000330181.9_4	ENST00000675579.1_1	chr16	29465821	29469540	SLX1B	+	protein_coding	chr16	29454237	29625038	AC133555.6	-	lncRNA	3719	opposite	12117_ID	chr16	29465822	29469540	3719	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
572	ENST00000333017.6_3	ENST00000424491.5_1	chr2	99858716	99871570	LYG2	-	protein_coding	chr2	99757947	99939196	AC079447.1	+	nonsense_mediated_decay	13037	opposite	7891_ID	chr2	99858717	99871570	12854	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
626	ENST00000340210.1	ENST00000377412.4	chr8	145321516	145323045	SCXB	+	protein_coding	chr8	145317002	145331153	KM-PA-2	-	protein_coding	1529	opposite	12020_ID	chr8	145321517	145323045	1529	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
683	ENST00000354746.4_1	ENST00000581396.5_3	chr17	17761540	17763355	AC122129.1	+	lncRNA	chr17	17746824	17875724	TOM1L2	-	protein_coding	1815	opposite	3981_ID	chr17	17761541	17763355	1815	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
701	ENST00000357525.6_2	ENST00000368488.9_4	chr6	118869458	118882879	PLN	+	protein_coding	chr6	118781943	119031238	CEP85L	-	protein_coding	13421	opposite	9583_ID	chr6	118869459	118882879	13421	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
729	ENST00000360423.12_2	ENST00000675579.1_1	chr16	29471233	29476287	SULT1A4	+	protein_coding	chr16	29454237	29625038	AC133555.6	-	lncRNA	5054	opposite	12582_ID	chr16	29471234	29476287	5054	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
731	ENST00000360473.8_1	ENST00000621282.4_3	chr13	50589389	50595056	KCNRG	+	protein_coding	chr13	50556687	50699677	DLEU2	-	lncRNA	5669	opposite	7429_ID	chr13	50589390	50595056	5667	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
734	ENST00000360771.8_5	ENST00000641741.2_2	chr4	145030456	145061904	GYPA	-	protein_coding	chr4	144833483	145114063	AC107223.1	+	lncRNA	31449	opposite	7202_ID	chr4	145030457	145061904	31448	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	13
788	ENST00000362212.1	ENST00000402714.6_3	chr14	100575991	100576090	MIR342	+	miRNA	chr14	100437785	100610573	EVL	+	protein_coding	99	same	8333_ID	chr14	100575992	100576090	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
839	ENST00000362457.1	ENST00000469902.6_5	chr3	124837940	124838044	RNU6-230P	-	snRNA	chr3	124801487	124931592	SLC12A8	-	protein_coding	104	same	11088_ID	chr3	124837941	124838044	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
871	ENST00000362724.1	ENST00000354379.8_4	chr3	37181817	37181921	RNU6-1301P	+	snRNA	chr3	37094146	37217851	LRRFIP2	-	protein_coding	104	opposite	10991_ID	chr3	37181818	37181921	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
873	ENST00000362731.1	ENST00000652605.1_1	chrX	74422537	74422644	RNU6-562P	+	snRNA	chrX	74376222	74524708	UPRT	+	protein_coding	107	same	11338_ID	chrX	74422538	74422644	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
908	ENST00000362922.1	ENST00000454872.6_3	chr3	175115035	175115137	RNU6-1233P	-	snRNA	chr3	174577123	175528336	NAALADL2	+	protein_coding	102	opposite	10930_ID	chr3	175115036	175115137	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
971	ENST00000363306.1	ENST00000638429.1_1	chr10	88649325	88649490	RNU1-19P	+	snRNA	chr10	88516357	88692582	BMPR1A	+	nonsense_mediated_decay	165	same	10570_ID	chr10	88649326	88649490	165	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
1030	ENST00000363605.1	ENST00000609686.4_3	chr12	13836475	13836820	RN7SKP162	+	misc_RNA	chr12	13690270	14134536	GRIN2B	-	protein_coding	345	opposite	9797_ID	chr12	13836476	13836820	345	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
1037	ENST00000363652.1	ENST00000323817.7_3	chr6	111043452	111043551	RNU6-957P	-	snRNA	chr6	110931180	111136840	CDK19	-	protein_coding	99	same	11634_ID	chr6	111043453	111043551	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
1066	ENST00000363779.1	ENST00000328257.13_2	chr11	73909792	73909899	RNA5SP343	-	rRNA	chr11	73882333	73965748	PPME1	+	protein_coding	107	opposite	10518_ID	chr11	73909793	73909899	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
1103	ENST00000363957.1	ENST00000587848.3_2	chr18	12098425	12098531	RNU6-324P	+	snRNA	chr18	12093841	12129763	ANKRD62	+	protein_coding	106	same	11154_ID	chr18	12098426	12098531	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
1113	ENST00000364023.1	ENST00000289416.10_4	chr16	20795830	20795937	RNU6-944P	+	snRNA	chr16	20775335	20808903	ACSM3	+	protein_coding	107	same	11626_ID	chr16	20795831	20795937	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
1147	ENST00000364243.1	ENST00000282587.9_2	chr2	32439524	32439631	RNU6-647P	-	snRNA	chr2	32390932	32449448	SLC30A6	+	protein_coding	107	opposite	11406_ID	chr2	32439525	32439631	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	13
1214	ENST00000364582.1	ENST00000454872.6_3	chr3	175485345	175485449	RNU6-1317P	+	snRNA	chr3	174577123	175528336	NAALADL2	+	protein_coding	104	same	11002_ID	chr3	175485346	175485449	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	13
1237	ENST00000364709.1	ENST00000262031.10_3	chr12	56982301	56982405	RNU6-343P	+	snRNA	chr12	56915603	56989977	RBMS2	+	protein_coding	104	same	11169_ID	chr12	56982302	56982405	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
1255	ENST00000364778.1	ENST00000454872.6_3	chr3	175327266	175327401	RNU4-91P	+	snRNA	chr3	174577123	175528336	NAALADL2	+	protein_coding	135	same	10716_ID	chr3	175327267	175327401	135	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
1282	ENST00000364922.1	ENST00000330458.7	chr17	34773399	34773506	RNU6-1192P	-	snRNA	chr17	34745935	34808103	TBC1D3G	-	protein_coding	107	same	10895_ID	chr17	34773400	34773506	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	13
1373	ENST00000365522.1	ENST00000448507.5_2	chr4	6998738	6999055	RN7SKP292	+	misc_RNA	chr4	6911170	7034845	TBC1D14	+	protein_coding	317	same	9884_ID	chr4	6998739	6999055	317	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
1402	ENST00000366110.4_3	ENST00000406486.8_2	chr22	25498399	25508659	KIAA1671-AS1	-	lncRNA	chr22	25348696	25590424	KIAA1671	+	protein_coding	10260	opposite	7439_ID	chr22	25498400	25508659	10260	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
1473	ENST00000371086.3_1	ENST00000371088.5_2	chr1	64012752	64016307	DLEU2L	+	lncRNA	chr1	63989195	64038364	EFCAB7	+	protein_coding	3555	same	6809_ID	chr1	64012753	64016307	3555	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
1487	ENST00000371833.4_4	ENST00000371839.6_6	chr1	49193190	49242563	BEND5	-	protein_coding	chr1	48998525	50489626	AGBL4	-	protein_coding	49451	same	6410_ID	chr1	49193191	49242563	49373	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
1531	ENST00000375527.3_4	ENST00000469372.5_2	chr6	31867389	31869863	ZBTB12	-	protein_coding	chr6	31865561	31913298	C2	+	protein_coding	2474	opposite	12995_ID	chr6	31867390	31869863	2474	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
1668	ENST00000383900.1	ENST00000294353.7_2	chr1	53270779	53270884	RNU6-969P	-	snRNA	chr1	53192124	53293008	ZYG11B	+	protein_coding	105	opposite	11643_ID	chr1	53270780	53270884	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
1753	ENST00000384136.1	ENST00000304621.10_2	chr18	21704133	21704249	RNU5A-6P	-	snRNA	chr18	21572736	21712991	TTC39C	+	protein_coding	116	opposite	10738_ID	chr18	21704134	21704249	116	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	13
1785	ENST00000384221.1	ENST00000620277.4_1	chrX	153996802	153996934	SNORA36A	+	snoRNA	chrX	153991016	154005963	DKC1	+	protein_coding	132	same	12169_ID	chrX	153996803	153996934	132	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
1818	ENST00000384319.1	ENST00000327441.11_3	chr14	37903673	37903778	RNU6-886P	-	snRNA	chr14	37667154	38021566	MIPOL1	+	protein_coding	105	opposite	11585_ID	chr14	37903674	37903778	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
1905	ENST00000384576.1	ENST00000584709.5_3	chr17	46274041	46274148	RNU6-1152P	-	snRNA	chr17	46210806	46507637	SKAP1	-	nonsense_mediated_decay	107	same	10857_ID	chr17	46274042	46274148	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
1981	ENST00000384783.1	ENST00000624829.4_4	chr16	72410602	72410659	RNU6-385P	+	snRNA	chr16	72316106	72698846	LINC01572	-	lncRNA	57	opposite	11198_ID	chr16	72410603	72410659	57	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
1988	ENST00000384816.1	ENST00000621318.4_3	chr7	99691182	99691266	MIR25	-	miRNA	chr7	99690351	99699563	MCM7	-	protein_coding	84	same	8205_ID	chr7	99691183	99691266	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
2024	ENST00000384854.1	ENST00000640149.1_1	chr12	97957589	97957689	MIR135A2	+	miRNA	chr12	97824661	97958813	RMST	+	lncRNA	100	same	8088_ID	chr12	97957590	97957689	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	13
2055	ENST00000384894.1	ENST00000273009.10_1	chr2	233037362	233037457	MIR562	+	miRNA	chr2	232825954	233209060	DIS3L2	+	protein_coding	95	same	8947_ID	chr2	233037363	233037457	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	13
2075	ENST00000384923.1	ENST00000426151.7_5	chr7	93113247	93113331	MIR489	-	miRNA	chr7	93053797	93204036	CALCR	-	protein_coding	84	same	8795_ID	chr7	93113248	93113331	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
2105	ENST00000385003.1	ENST00000326724.9_5	chr17	79099075	79099173	MIR657	-	miRNA	chr17	79091094	79140021	AATK	-	protein_coding	98	same	9061_ID	chr17	79099076	79099173	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
2119	ENST00000385024.1	ENST00000621318.4_3	chr7	99691390	99691470	MIR93	-	miRNA	chr7	99690351	99699563	MCM7	-	protein_coding	80	same	9108_ID	chr7	99691391	99691470	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
2131	ENST00000385039.1	ENST00000590918.6_2	chr19	46178185	46178282	MIR642A	+	miRNA	chr19	46171478	46186980	GIPR	+	protein_coding	97	same	9050_ID	chr19	46178186	46178282	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
2240	ENST00000385271.1	ENST00000621282.4_3	chr13	50623108	50623197	MIR16-1	-	miRNA	chr13	50556687	50699677	DLEU2	-	lncRNA	89	same	8115_ID	chr13	50623109	50623197	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
2246	ENST00000385279.1	ENST00000426151.7_5	chr7	93112071	93112167	MIR653	-	miRNA	chr7	93053797	93204036	CALCR	-	protein_coding	96	same	9059_ID	chr7	93112072	93112167	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
2259	ENST00000385301.1	ENST00000621318.4_3	chr7	99691615	99691697	MIR106B	-	miRNA	chr7	99690351	99699563	MCM7	-	protein_coding	82	same	7962_ID	chr7	99691616	99691697	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
2285	ENST00000390137.2	ENST00000326724.9_5	chr17	79099676	79099755	MIR338	+	miRNA	chr17	79091094	79140021	AATK	-	protein_coding	79	opposite	8328_ID	chr17	79099677	79099755	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
2305	ENST00000390220.1	ENST00000370244.5_5	chr1	94312387	94312467	MIR760	+	miRNA	chr1	94027347	94312706	BCAR3	-	protein_coding	80	opposite	9078_ID	chr1	94312388	94312467	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
2341	ENST00000390765.2	ENST00000196169.7_3	chr13	61026837	61026919	AL354764.1	-	miRNA	chr13	60970590	61148012	TDRD3	+	protein_coding	82	opposite	5283_ID	chr13	61026838	61026919	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
2375	ENST00000390919.1	ENST00000519148.5_3	chr8	144432341	144432448	RNU6-220P	+	snRNA	chr8	144391529	144442147	TOP1MT	-	protein_coding	107	opposite	11082_ID	chr8	144432342	144432448	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
2376	ENST00000390930.1	ENST00000377768.7_3	chr20	17943352	17943589	SNORD17	-	snoRNA	chr20	17922240	17949623	SNX5	-	protein_coding	237	same	12380_ID	chr20	17943353	17943589	237	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
2405	ENST00000391068.1	ENST00000507379.5_3	chr5	112114059	112114166	RNU6-482P	+	snRNA	chr5	112043218	112174751	APC	+	protein_coding	107	same	11273_ID	chr5	112114060	112114166	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
2460	ENST00000391313.1	ENST00000355765.11_2	chr14	45557445	45557511	SNORD58	+	snoRNA	chr14	45553318	45585485	PRPF39	+	protein_coding	66	same	12424_ID	chr14	45557446	45557511	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
2479	ENST00000393473.6_1	ENST00000424491.5_1	chr2	99771417	99779620	LIPT1	+	protein_coding	chr2	99757947	99939196	AC079447.1	+	nonsense_mediated_decay	8203	same	7823_ID	chr2	99771418	99779620	8203	*	+	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
2582	ENST00000401239.1	ENST00000264731.8_4	chr3	189547710	189547798	MIR944	+	miRNA	chr3	189349177	189615065	TP63	+	protein_coding	88	same	9121_ID	chr3	189547711	189547798	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
2652	ENST00000408098.1	ENST00000326724.9_5	chr17	79106995	79107108	MIR1250	-	miRNA	chr17	79091094	79140021	AATK	-	protein_coding	113	same	8001_ID	chr17	79106996	79107108	113	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
2698	ENST00000408242.2	ENST00000264170.9_2	chr2	143763268	143763360	AC013444.2	-	miRNA	chr2	143635232	143813402	KYNU	+	protein_coding	92	opposite	1442_ID	chr2	143763269	143763360	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
2719	ENST00000408289.1	ENST00000373839.8_3	chr1	28807873	28807992	RNU6ATAC27P	+	snRNA	chr1	28696250	28826876	PHACTR4	+	protein_coding	119	same	11672_ID	chr1	28807874	28807992	119	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	13
2739	ENST00000408338.1	ENST00000394854.8_5	chr4	102251458	102251571	MIR1255A	-	miRNA	chr4	101944574	102268683	PPP3CA	-	protein_coding	113	same	8006_ID	chr4	102251459	102251571	113	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
2748	ENST00000408359.1	ENST00000624829.4_4	chr16	72613440	72613536	AC092289.1	-	miRNA	chr16	72316106	72698846	LINC01572	-	lncRNA	96	same	3071_ID	chr16	72613441	72613536	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
2779	ENST00000408439.1	ENST00000383024.6_1	chr22	20073580	20073665	MIR1306	+	miRNA	chr22	20067754	20099398	DGCR8	+	protein_coding	85	same	8079_ID	chr22	20073581	20073665	85	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	13
2802	ENST00000408500.1	ENST00000648996.1_1	chr14	59237869	59237964	AL121819.1	-	miRNA	chr14	59113348	59484250	LINC01500	+	lncRNA	95	opposite	4753_ID	chr14	59237870	59237964	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
2828	ENST00000408548.1	ENST00000599522.6_2	chrX	51933716	51933844	SNORA11D	+	snoRNA	chrX	51927918	51935362	MAGED4	+	protein_coding	128	same	12154_ID	chrX	51933717	51933844	128	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
2830	ENST00000408552.2	ENST00000640149.1_1	chr12	97885677	97885761	MIR1251	+	miRNA	chr12	97824661	97958813	RMST	+	lncRNA	84	same	8002_ID	chr12	97885678	97885761	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
2834	ENST00000408559.1	ENST00000432992.7_4	chr17	9974206	9974321	AC000003.1	+	miRNA	chr17	9813922	10101923	GAS7	-	protein_coding	115	opposite	12_ID	chr17	9974207	9974321	115	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
2861	ENST00000408628.1	ENST00000264645.12_2	chr17	38306388	38306475	AC068669.1	+	miRNA	chr17	38296789	38328424	CASC3	+	protein_coding	87	same	2432_ID	chr17	38306389	38306475	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
2871	ENST00000408638.1	ENST00000531448.5_1	chr11	93140990	93141079	AP004242.1	-	miRNA	chr11	93063767	93171653	DEUP1	+	nonsense_mediated_decay	89	opposite	6277_ID	chr11	93140991	93141079	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
2910	ENST00000408730.1	ENST00000435205.6_3	chr4	152486874	152486961	AC097455.1	-	miRNA	chr4	152330327	152591655	FAM160A1	+	protein_coding	87	opposite	3313_ID	chr4	152486875	152486961	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
2919	ENST00000408745.1	ENST00000380995.5_1	chr22	47243802	47243875	Z97351.1	+	miRNA	chr22	47158513	47571342	TBC1D22A	+	protein_coding	73	same	12966_ID	chr22	47243803	47243875	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
2942	ENST00000408812.1	ENST00000584709.5_3	chr17	46233788	46233873	MIR1203	-	miRNA	chr17	46210806	46507637	SKAP1	-	nonsense_mediated_decay	85	same	7978_ID	chr17	46233789	46233873	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
2947	ENST00000408819.1	ENST00000371839.6_6	chr1	50447886	50447967	AL645730.1	+	miRNA	chr1	48998525	50489626	AGBL4	-	protein_coding	81	opposite	5863_ID	chr1	50447887	50447967	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
2968	ENST00000408866.1	ENST00000505156.2_3	chr8	117148997	117149139	AC103863.1	+	miRNA	chr8	116962735	117337297	LINC00536	-	lncRNA	142	opposite	3487_ID	chr8	117148998	117149139	142	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
2987	ENST00000409448.1_3	ENST00000424491.5_1	chr2	99900719	99921205	LYG1	-	protein_coding	chr2	99757947	99939196	AC079447.1	+	nonsense_mediated_decay	20505	opposite	7890_ID	chr2	99900720	99921205	20486	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
3007	ENST00000410125.1	ENST00000314583.8_4	chr3	121374321	121374451	RNU4-62P	-	snRNA	chr3	121350245	121379750	HCLS1	-	protein_coding	130	same	10700_ID	chr3	121374322	121374451	130	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
3100	ENST00000410482.1	ENST00000393441.8_3	chr10	103124601	103124792	RNU2-59P	-	snRNA	chr10	103113789	103317076	BTRC	+	protein_coding	191	opposite	10647_ID	chr10	103124602	103124792	191	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
3109	ENST00000410533.1	ENST00000377182.5_2	chr9	72803486	72803666	RNU2-5P	-	snRNA	chr9	72658763	72841888	MAMDC2	+	protein_coding	180	opposite	10648_ID	chr9	72803487	72803666	180	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
3113	ENST00000410562.1	ENST00000315392.9_5	chr17	37237317	37237440	AC091178.1	+	miRNA	chr17	37219565	37307890	PLXDC1	-	protein_coding	123	opposite	2990_ID	chr17	37237318	37237440	123	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	13
3142	ENST00000410704.1	ENST00000306151.9_2	chr7	100701579	100701848	RN7SKP54	+	misc_RNA	chr7	100663361	100702140	MUC17	+	protein_coding	269	same	9905_ID	chr7	100701580	100701848	269	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	13	13
3183	ENST00000410929.1	ENST00000658130.1_1	chr4	130781576	130781655	RNY5P4	-	misc_RNA	chr4	130692750	130896484	LINC02465	+	lncRNA	79	opposite	11869_ID	chr4	130781577	130781655	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
3227	ENST00000411159.1	ENST00000447079.6_4	chr17	37638738	37638843	RNU6-981P	-	snRNA	chr17	37617738	37690797	CDK12	+	protein_coding	105	opposite	11651_ID	chr17	37638739	37638843	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
3305	ENST00000412085.1_1	ENST00000375110.6_3	chr10	32635426	32636107	AL391839.2	+	lncRNA	chr10	32556678	32667726	EPC1	-	protein_coding	681	opposite	5587_ID	chr10	32635427	32636107	681	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
3356	ENST00000413315.1_3	ENST00000295095.11_2	chr2	144398336	144413748	ARHGAP15-AS1	-	lncRNA	chr2	143886987	144525921	ARHGAP15	+	protein_coding	27047	opposite	6331_ID	chr2	144398337	144413748	15412	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
3361	ENST00000413451.1	ENST00000438032.6_3	chr1	21069479	21070455	RP5-930J4.4	+	antisense	chr1	21066758	21113800	HP1BP3	-	protein_coding	976	opposite	11946_ID	chr1	21069480	21070455	976	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	13	13
3380	ENST00000414085.1_3	ENST00000357410.7_1	chr20	45529781	45530365	AL354766.2	-	lncRNA	chr20	45523262	45817492	EYA2	+	protein_coding	584	opposite	5284_ID	chr20	45529782	45530365	584	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
3417	ENST00000414896.1_3	ENST00000391973.6_1	chr2	242290754	242292519	AC005104.1	-	lncRNA	chr2	242254514	242293439	SEPTIN2	+	protein_coding	1765	opposite	238_ID	chr2	242290755	242292519	1765	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	13	13
3437	ENST00000415237.1_3	ENST00000335693.9_2	chr7	40577725	40586527	SUGCT-AS1	-	lncRNA	chr7	40174603	40900362	SUGCT	+	protein_coding	8802	opposite	12578_ID	chr7	40577726	40586527	8802	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
3484	ENST00000416432.1_3	ENST00000405315.9_5	chr19	49414186	49422148	NUCB1-AS1	-	lncRNA	chr19	49403568	49426629	NUCB1	+	protein_coding	7962	opposite	9315_ID	chr19	49414187	49422148	7962	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	13
3490	ENST00000416554.1_3	ENST00000378295.9_4	chr1	3628763	3630862	TP73-AS2	-	lncRNA	chr1	3569079	3652765	TP73	+	protein_coding	2099	opposite	12766_ID	chr1	3628764	3630862	2099	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
3502	ENST00000417120.1_4	ENST00000336199.9_4	chr1	243956506	243957702	AKT3-IT1	-	lncRNA	chr1	243651534	244006538	AKT3	-	protein_coding	1196	same	4428_ID	chr1	243956507	243957702	1196	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
3516	ENST00000417447.1_1	ENST00000375110.6_3	chr10	32636324	32663416	AL391839.1	+	lncRNA	chr10	32556678	32667726	EPC1	-	protein_coding	27625	opposite	5586_ID	chr10	32636325	32663416	27092	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
3532	ENST00000417987.1_3	ENST00000643584.1_3	chr13	48399464	48410091	AL138962.1	-	lncRNA	chr13	48319870	48575427	SUCLA2	-	nonsense_mediated_decay	10627	same	4990_ID	chr13	48399465	48410091	10627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	13
3575	ENST00000419034.1_3	ENST00000645284.1_3	chr1	6503093	6507066	AL031848.1	-	lncRNA	chr1	6484835	6521004	ESPN	+	protein_coding	3973	opposite	4565_ID	chr1	6503094	6507066	3973	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	13
3585	ENST00000419441.1_1	ENST00000375110.6_3	chr10	32570613	32571757	AL158834.1	+	lncRNA	chr10	32556678	32667726	EPC1	-	protein_coding	1144	opposite	5118_ID	chr10	32570614	32571757	1144	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
3599	ENST00000419832.1_1	ENST00000324698.11_4	chr7	123096682	123099910	AC073323.1	+	lncRNA	chr7	123092246	123174649	IQUB	-	protein_coding	3228	opposite	2520_ID	chr7	123096683	123099910	3228	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	13
3614	ENST00000420071.1_1	ENST00000371839.6_6	chr1	49723082	49734957	AGBL4-AS1	+	lncRNA	chr1	48998525	50489626	AGBL4	-	protein_coding	11875	opposite	4413_ID	chr1	49723083	49734957	11875	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
3631	ENST00000420664.1_3	ENST00000393446.6_6	chr7	116605899	116607526	AC106873.1	-	lncRNA	chr7	116593291	116870150	ST7	+	protein_coding	1627	opposite	3668_ID	chr7	116605900	116607526	1627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
3668	ENST00000421610.2_1	ENST00000584709.5_3	chr17	46371708	46385191	THRA1/BTR	+	lncRNA	chr17	46210806	46507637	SKAP1	-	nonsense_mediated_decay	14428	opposite	12682_ID	chr17	46371709	46385191	13483	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
3673	ENST00000421657.1_3	ENST00000281141.9_2	chr10	12287626	12289844	AL512770.1	-	lncRNA	chr10	12238186	12292588	CDC123	+	protein_coding	3095	opposite	5697_ID	chr10	12287627	12289844	2218	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	13
3698	ENST00000422198.1_3	ENST00000634502.1_1	chr1	59520068	59521721	AL592431.2	-	lncRNA	chr1	59399314	59569492	LINC01358	+	lncRNA	1653	opposite	5815_ID	chr1	59520069	59521721	1653	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
3702	ENST00000422250.1_3	ENST00000535699.5_3	chr1	197407105	197416599	AL136322.1	-	lncRNA	chr1	197237333	197447584	CRB1	+	protein_coding	9494	opposite	4902_ID	chr1	197407106	197416599	9494	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	13
3712	ENST00000422537.6_5	ENST00000424491.5_1	chr2	99778409	99797390	MITD1	-	protein_coding	chr2	99757947	99939196	AC079447.1	+	nonsense_mediated_decay	19632	opposite	9141_ID	chr2	99778410	99797390	18981	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
3848	ENST00000426315.1_3	ENST00000454872.6_3	chr3	175490932	175494121	NAALADL2-AS1	-	lncRNA	chr3	174577123	175528336	NAALADL2	+	protein_coding	3189	opposite	9218_ID	chr3	175490933	175494121	3189	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	13
3873	ENST00000427492.1_1	ENST00000372921.10_5	chr10	75141190	75143254	AL512656.1	+	lncRNA	chr10	75134858	75173816	ANXA7	-	protein_coding	2064	opposite	5695_ID	chr10	75141191	75143254	2064	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	13
3888	ENST00000428201.1_1	ENST00000358763.7_3	chr22	32979285	32980190	SYN3-AS1	+	lncRNA	chr22	32903806	33454367	SYN3	-	protein_coding	905	opposite	12586_ID	chr22	32979286	32980190	905	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
3943	ENST00000429567.2_1	ENST00000265381.7_4	chr9	72087381	72109429	AL353693.1	+	lncRNA	chr9	72042447	72287287	APBA1	-	protein_coding	22048	opposite	5253_ID	chr9	72087382	72109429	22048	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	13
4001	ENST00000430988.1_3	ENST00000486442.6_2	chr2	23729912	23747214	AC011239.1	-	lncRNA	chr2	23608049	23931476	KLHL29	+	protein_coding	17302	opposite	1180_ID	chr2	23729913	23747214	17302	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
4045	ENST00000432405.1_1	ENST00000335693.9_2	chr7	40815156	40824816	AC005160.1	+	lncRNA	chr7	40174603	40900362	SUGCT	+	protein_coding	9660	same	245_ID	chr7	40815157	40824816	9660	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	13
4057	ENST00000432703.1_1	ENST00000431992.5_4	chr1	33815952	33828846	PHC2-AS1	+	lncRNA	chr1	33789223	33841194	PHC2	-	protein_coding	12894	opposite	9549_ID	chr1	33815953	33828846	12894	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	13
4091	ENST00000433526.1_3	ENST00000324631.13_3	chr10	18820777	18822265	AL450384.1	-	lncRNA	chr10	18429352	18832486	CACNB2	+	protein_coding	1488	opposite	5657_ID	chr10	18820778	18822265	1488	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
4179	ENST00000436206.1_3	ENST00000354567.7_2	chr1	77811730	77815270	AC095030.1	-	lncRNA	chr1	77747703	78025651	AK5	+	protein_coding	45483	opposite	3262_ID	chr1	77811731	77815270	3540	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
4260	ENST00000438553.1_1	ENST00000381213.7_4	chr5	56237133	56242979	AC016644.1	+	lncRNA	chr5	56215429	56247952	MIER3	-	protein_coding	5846	opposite	1547_ID	chr5	56237134	56242979	5846	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	13
4377	ENST00000441613.1_1	ENST00000292211.5_4	chr1	154526084	154527493	UBE2Q1-AS1	+	lncRNA	chr1	154521052	154531138	UBE2Q1	-	protein_coding	1409	opposite	12841_ID	chr1	154526085	154527493	1409	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	13
4394	ENST00000442146.1_3	ENST00000261461.7_3	chr1	212472836	212505055	AL360091.3	-	lncRNA	chr1	212458751	212535195	PPP2R5A	+	protein_coding	32219	opposite	5515_ID	chr1	212472837	212505055	32219	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	13
4432	ENST00000443034.1_3	ENST00000378295.9_4	chr1	3575501	3585336	TP73-AS3	-	lncRNA	chr1	3569079	3652765	TP73	+	protein_coding	9835	opposite	12767_ID	chr1	3575502	3585336	9835	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
4484	ENST00000444982.1_1	ENST00000358763.7_3	chr22	33179162	33180968	Z73495.1	+	lncRNA	chr22	32903806	33454367	SYN3	-	protein_coding	1806	opposite	12935_ID	chr22	33179163	33180968	1806	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
4509	ENST00000445733.1_1	ENST00000611875.5_5	chr16	175735	177218	Z69666.1	+	lncRNA	chr16	135384	188672	NPRL3	-	protein_coding	1483	opposite	12932_ID	chr16	175736	177218	1483	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
4516	ENST00000445938.1_1	ENST00000448521.6_4	chr7	44104506	44105678	AC017116.1	+	lncRNA	chr7	44084300	44109055	DBNL	+	protein_coding	1172	same	1611_ID	chr7	44104507	44105678	1172	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	13	13
4552	ENST00000446786.2_3	ENST00000371532.5_2	chr1	53346887	53347402	AC099677.3	-	lncRNA	chr1	53308182	53360670	ZYG11A	+	protein_coding	515	opposite	3386_ID	chr1	53346888	53347402	515	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	13
4603	ENST00000448346.1	ENST00000371839.6_6	chr1	50459989	50461874	AL645730.2	+	protein_coding	chr1	48998525	50489626	AGBL4	-	protein_coding	1885	opposite	5864_ID	chr1	50459990	50461874	1885	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
4717	ENST00000451584.1_3	ENST00000377252.5_2	chr10	20359733	20380713	AC069549.1	-	lncRNA	chr10	20105360	20578785	PLXDC2	+	protein_coding	20980	opposite	2494_ID	chr10	20359734	20380713	20980	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
4746	ENST00000452097.1_3	ENST00000419967.5_1	chr19	54622890	54628722	AC245052.4	-	lncRNA	chr19	54618789	54635150	PRPF31	+	protein_coding	5832	opposite	4304_ID	chr19	54622891	54628722	5832	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	13
4790	ENST00000453370.1_1	ENST00000306376.10_4	chr3	185796958	185798736	ETV5-AS1	+	lncRNA	chr3	185764102	185826878	ETV5	-	protein_coding	1778	opposite	6940_ID	chr3	185796959	185798736	1778	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	13
4796	ENST00000453572.1_3	ENST00000336199.9_4	chr1	243866158	243904123	AL662889.1	-	lncRNA	chr1	243651534	244006538	AKT3	-	protein_coding	37965	same	5877_ID	chr1	243866159	243904123	37965	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
4925	ENST00000457061.1_3	ENST00000371839.6_6	chr1	49839872	49937757	AGBL4-IT1	-	lncRNA	chr1	48998525	50489626	AGBL4	-	protein_coding	97885	same	4414_ID	chr1	49839873	49937757	97885	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
4927	ENST00000457097.1_1	ENST00000409636.5_3	chr2	38828739	38829320	AC011247.1	+	lncRNA	chr2	38789119	38830171	HNRNPLL	-	protein_coding	581	opposite	1182_ID	chr2	38828740	38829320	581	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
4935	ENST00000457162.2_3	ENST00000540844.5_3	chr21	30430393	30432416	AF129075.1	-	lncRNA	chr21	30428642	30446118	CCT8	-	protein_coding	2023	same	4388_ID	chr21	30430394	30432416	2023	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	13
4942	ENST00000457326.3_2	ENST00000262134.10_2	chr16	55600595	55601599	CAPNS2	+	protein_coding	chr16	55542983	55620578	LPCAT2	+	protein_coding	1004	same	6550_ID	chr16	55600596	55601599	1004	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
4943	ENST00000457328.1_3	ENST00000265381.7_4	chr9	72043163	72043637	AL355140.1	-	lncRNA	chr9	72042447	72287287	APBA1	-	protein_coding	474	same	5322_ID	chr9	72043164	72043637	474	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	13	13
4948	ENST00000457436.2_2	ENST00000019103.8_4	chr2	120234003	120244906	SCTR-AS1	+	lncRNA	chr2	120197418	120282059	SCTR	-	protein_coding	10919	opposite	12015_ID	chr2	120234004	120244906	10903	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	13
4992	ENST00000458790.1	ENST00000507810.5_3	chr5	111497181	111497314	SNORA13	+	snoRNA	chr5	111478137	111564475	EPB41L4A	-	processed_transcript	133	opposite	12156_ID	chr5	111497182	111497314	133	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
4995	ENST00000458792.1	ENST00000404824.2_3	chr2	10955610	10955672	RNU7-176P	-	snRNA	chr2	10923986	10978103	PDIA6	-	protein_coding	62	same	11746_ID	chr2	10955611	10955672	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
5009	ENST00000458841.1	ENST00000280346.11_2	chr11	111903222	111903322	RNU6-893P	-	snRNA	chr11	111896131	111935128	DLAT	+	protein_coding	100	opposite	11588_ID	chr11	111903223	111903322	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
5025	ENST00000458892.1	ENST00000355765.11_2	chr14	45580085	45580171	SNORD127	+	snoRNA	chr14	45553318	45585485	PRPF39	+	protein_coding	86	same	12368_ID	chr14	45580086	45580171	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
5078	ENST00000459261.1	ENST00000635992.1_1	chr3	29052732	29052827	AC097361.1	+	miRNA	chr3	28390668	29809028	AC098650.1	+	nonsense_mediated_decay	95	same	3306_ID	chr3	29052733	29052827	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
5120	ENST00000459479.1	ENST00000272238.9_4	chr2	10884311	10884375	RNU7-138P	+	snRNA	chr2	10861755	10925236	ATP6V1C2	+	protein_coding	64	same	11722_ID	chr2	10884312	10884375	64	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
5122	ENST00000459501.1	ENST00000394934.4_4	chr10	73604491	73604551	RNU7-38P	-	snRNA	chr10	73576055	73611082	PSAP	-	protein_coding	60	same	11777_ID	chr10	73604492	73604551	60	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
5140	ENST00000459597.1	ENST00000519951.2_3	chr8	43158518	43158625	RNU6-104P	+	snRNA	chr8	43147625	43218661	POTEA	+	polymorphic_pseudogene	107	same	10795_ID	chr8	43158519	43158625	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
5152	ENST00000460535.2	ENST00000314583.8_4	chr3	121372842	121373143	RN7SL172P	-	misc_RNA	chr3	121350245	121379750	HCLS1	-	protein_coding	301	same	9993_ID	chr3	121372843	121373143	301	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
5168	ENST00000461853.2	ENST00000367097.8_2	chr6	158858828	158859118	RN7SL173P	+	misc_RNA	chr6	158733496	158932860	TULP4	+	protein_coding	290	same	9994_ID	chr6	158858829	158859118	290	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
5183	ENST00000462468.2	ENST00000417570.6_3	chr19	14694906	14695204	RN7SL337P	+	misc_RNA	chr19	14693895	14722847	CLEC17A	+	protein_coding	298	same	10114_ID	chr19	14694907	14695204	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
5199	ENST00000463588.2	ENST00000283233.10_7	chr2	159303675	159303973	RN7SL393P	-	misc_RNA	chr2	159027584	159313265	CCDC148	-	protein_coding	298	same	10152_ID	chr2	159303676	159303973	298	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
5219	ENST00000464937.2	ENST00000284073.7_3	chr17	55695468	55695759	RN7SL449P	+	misc_RNA	chr17	55333883	55762050	MSI2	+	protein_coding	291	same	10190_ID	chr17	55695469	55695759	291	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	13
5222	ENST00000465067.2	ENST00000510784.8_4	chr6	25031242	25031510	RN7SL334P	-	misc_RNA	chr6	24839586	25042246	RIPOR2	-	protein_coding	268	same	10113_ID	chr6	25031243	25031510	268	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
5244	ENST00000466775.1_1	ENST00000392811.6_5	chr7	150946410	150951476	AC005486.1	+	lncRNA	chr7	150936058	150974538	SMARCD3	-	protein_coding	5066	opposite	297_ID	chr7	150946411	150951476	5066	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
5313	ENST00000471110.5_1	ENST00000393446.6_6	chr7	116594516	116738860	ST7-OT4	+	lncRNA	chr7	116593291	116870150	ST7	+	protein_coding	144908	same	12561_ID	chr7	116594517	116738860	144344	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
5352	ENST00000473426.1_2	ENST00000295095.11_2	chr2	144359085	144366328	AC092652.2	+	lncRNA	chr2	143886987	144525921	ARHGAP15	+	protein_coding	7243	same	3115_ID	chr2	144359086	144366328	7243	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
5385	ENST00000475661.2	ENST00000301335.10_6	chr17	1507669	1507966	RN7SL105P	-	misc_RNA	chr17	1472561	1532128	SLC43A2	-	protein_coding	297	same	9942_ID	chr17	1507670	1507966	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
5395	ENST00000476316.2	ENST00000336812.5_4	chr4	24564817	24565084	RN7SL16P	-	misc_RNA	chr4	24529097	24586177	DHX15	-	protein_coding	267	same	9991_ID	chr4	24564818	24565084	267	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
5408	ENST00000477246.5_1	ENST00000338458.8_3	chr3	56974067	56994882	ARHGEF3-AS1	+	lncRNA	chr3	56761445	57113336	ARHGEF3	-	protein_coding	20815	opposite	6337_ID	chr3	56974068	56994882	20815	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	13
5409	ENST00000477493.2	ENST00000347132.10_3	chr1	41270517	41270811	RN7SL326P	+	misc_RNA	chr1	41249458	41306124	KCNQ4	+	protein_coding	294	same	10106_ID	chr1	41270518	41270811	294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
5410	ENST00000477654.2	ENST00000417570.6_3	chr19	14699168	14699465	RN7SL842P	+	misc_RNA	chr19	14693895	14722847	CLEC17A	+	protein_coding	297	same	10473_ID	chr19	14699169	14699465	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
5491	ENST00000483066.2	ENST00000229812.8_4	chr6	36489967	36490275	RN7SL748P	+	misc_RNA	chr6	36461668	36515256	STK38	-	protein_coding	308	opposite	10403_ID	chr6	36489968	36490275	308	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
5584	ENST00000490061.2	ENST00000530562.5_3	chr11	74556954	74557251	RN7SL239P	+	misc_RNA	chr11	74518783	74660225	XRRA1	-	nonsense_mediated_decay	297	opposite	10044_ID	chr11	74556955	74557251	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
5769	ENST00000502589.1_3	ENST00000322285.7_1	chr5	75581366	75607287	AC113404.1	-	lncRNA	chr5	75379238	75649764	SV2C	+	protein_coding	25921	opposite	3854_ID	chr5	75581367	75607287	25921	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	13
5786	ENST00000503493.1_1	ENST00000506583.5_3	chr4	10008105	10011349	SLC2A9-AS1	+	lncRNA	chr4	9827847	10056499	SLC2A9	-	protein_coding	3244	opposite	12087_ID	chr4	10008106	10011349	3244	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
5810	ENST00000504249.1_1	ENST00000506583.5_3	chr4	9924437	9925770	AC108199.1	+	lncRNA	chr4	9827847	10056499	SLC2A9	-	protein_coding	1333	opposite	3729_ID	chr4	9924438	9925770	1333	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
5826	ENST00000504748.1_1	ENST00000511216.6_5	chr4	1350368	1351863	AC078852.2	+	lncRNA	chr4	1341053	1389777	UVSSA	+	protein_coding	1495	same	2594_ID	chr4	1350369	1351863	1495	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
6014	ENST00000510632.1_1	ENST00000290974.7_5	chr4	2297310	2320816	AL158068.2	+	lncRNA	chr4	2271323	2420372	ZFYVE28	-	protein_coding	23506	opposite	5094_ID	chr4	2297311	2320816	23506	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	13
6071	ENST00000512262.1_1	ENST00000420470.3_5	chr4	106482747	106491395	ARHGEF38-IT1	+	lncRNA	chr4	106473776	106602071	ARHGEF38	+	protein_coding	8648	same	6338_ID	chr4	106482748	106491395	8648	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
6190	ENST00000515842.1_1	ENST00000511216.6_5	chr4	1352266	1353249	AC078852.1	+	lncRNA	chr4	1341053	1389777	UVSSA	+	protein_coding	983	same	2593_ID	chr4	1352267	1353249	983	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
6205	ENST00000515911.1	ENST00000371088.5_2	chr1	64002381	64002441	RNU7-123P	-	snRNA	chr1	63989195	64038364	EFCAB7	+	protein_coding	60	opposite	11709_ID	chr1	64002382	64002441	60	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
6227	ENST00000515958.1	ENST00000354567.7_2	chr1	77886009	77886071	RNU7-8P	+	snRNA	chr1	77747703	78025651	AK5	+	protein_coding	62	same	11816_ID	chr1	77886010	77886071	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
6296	ENST00000516172.1	ENST00000636041.1_1	chr17	60460464	60460527	RNU7-52P	+	snRNA	chr17	60433224	60493837	EFCAB3	+	processed_transcript	63	same	11790_ID	chr17	60460465	60460527	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
6304	ENST00000516201.1	ENST00000347464.9_1	chr2	234184372	234184648	SCARNA5	+	snoRNA	chr2	234160216	234204319	ATG16L1	+	protein_coding	276	same	11997_ID	chr2	234184373	234184648	276	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
6307	ENST00000516209.1	ENST00000294353.7_2	chr1	53219993	53220134	RNU2-30P	+	snRNA	chr1	53192124	53293008	ZYG11B	+	protein_coding	141	same	10628_ID	chr1	53219994	53220134	141	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
6318	ENST00000516227.1	ENST00000369519.4_2	chr10	112516213	112516481	RN7SKP288	+	misc_RNA	chr10	112404093	112599226	RBM20	+	protein_coding	268	same	9880_ID	chr10	112516214	112516481	268	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
6378	ENST00000516413.1	ENST00000367511.4_4	chr1	184790561	184790623	RNU7-13P	-	snRNA	chr1	184760165	184943640	NIBAN1	-	protein_coding	62	same	11723_ID	chr1	184790562	184790623	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
6387	ENST00000516446.1	ENST00000428830.6_4	chr11	125519640	125519782	RNU2-35P	+	snRNA	chr11	125495868	125546150	CHEK1	+	protein_coding	142	same	10632_ID	chr11	125519641	125519782	142	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
6404	ENST00000516500.1	ENST00000369705.4_4	chr6	84077424	84077510	AL391416.1	+	miRNA	chr6	83920120	84140770	ME1	-	protein_coding	86	opposite	5577_ID	chr6	84077425	84077510	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
6458	ENST00000516654.1	ENST00000337537.8_5	chr14	63944491	63944557	RNU6-852P	+	snRNA	chr14	63838081	64010095	PPP2R5E	-	protein_coding	66	opposite	11557_ID	chr14	63944492	63944557	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
6459	ENST00000516655.1	ENST00000520878.5_3	chr5	178046728	178046999	RN7SKP70	-	misc_RNA	chr5	178029664	178054089	CLK4	-	retained_intron	271	same	9914_ID	chr5	178046729	178046999	271	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	13
6460	ENST00000516656.1	ENST00000348849.8_4	chr2	161253339	161253479	RMRPP3	-	misc_RNA	chr2	161128661	161350318	RBMS1	-	protein_coding	140	same	9757_ID	chr2	161253340	161253479	140	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
6607	ENST00000517070.1	ENST00000542077.5_1	chr1	212272862	212273018	RN7SKP98	-	misc_RNA	chr1	212208894	212278348	DTL	+	protein_coding	156	opposite	9940_ID	chr1	212272863	212273018	156	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
6640	ENST00000517157.1	ENST00000011619.6_4	chr6	13680311	13680373	RNU7-91P	+	snRNA	chr6	13621729	13712067	RANBP9	-	protein_coding	62	opposite	11818_ID	chr6	13680312	13680373	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
6661	ENST00000517210.1	ENST00000435205.6_3	chr4	152497917	152498068	RN7SKP35	+	misc_RNA	chr4	152330327	152591655	FAM160A1	+	protein_coding	151	same	9891_ID	chr4	152497918	152498068	151	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
6715	ENST00000517454.1_1	ENST00000381869.5_5	chr8	17561496	17563696	AC124069.1	+	lncRNA	chr8	17501303	17658426	MTUS1	-	protein_coding	2200	opposite	4001_ID	chr8	17561497	17563696	2200	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
6727	ENST00000517884.1_3	ENST00000417640.7_2	chr8	91818701	91871468	AC103770.1	-	lncRNA	chr8	91804002	91971621	NECAB1	+	protein_coding	52767	opposite	3468_ID	chr8	91818702	91871468	52767	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	13
6804	ENST00000520037.1_1	ENST00000677409.1_1	chr8	109238428	109239773	AC087620.1	+	lncRNA	chr8	109213436	109455704	EIF3E	-	protein_coding	1345	opposite	2836_ID	chr8	109238429	109239773	1345	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
6828	ENST00000520863.1_3	ENST00000617275.5_2	chr8	38827878	38830530	AC108863.1	-	lncRNA	chr8	38758863	38831431	PLEKHA2	+	protein_coding	2652	opposite	3749_ID	chr8	38827879	38830530	2652	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	13	13
6998	ENST00000526976.1_1	ENST00000281038.10_4	chr11	78244221	78269611	AP003110.1	+	lncRNA	chr11	78147013	78285909	NARS2	-	protein_coding	25390	opposite	6239_ID	chr11	78244222	78269611	25390	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
7259	ENST00000537730.1_3	ENST00000267260.5_2	chr12	119468843	119554766	AC084361.1	-	lncRNA	chr12	119419345	119600856	SRRM4	+	protein_coding	85923	opposite	2745_ID	chr12	119468844	119554766	85923	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	13
7306	ENST00000540226.1_3	ENST00000538872.6_3	chr12	215689	221016	AC026369.3	-	lncRNA	chr12	175932	287621	IQSEC3	+	protein_coding	5327	opposite	2142_ID	chr12	215690	221016	5327	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
7308	ENST00000540307.1_1	ENST00000398868.8_5	chr11	63405148	63426434	AP000753.2	+	lncRNA	chr11	63391558	63438848	ATL3	-	protein_coding	21286	opposite	6018_ID	chr11	63405149	63426434	21286	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	13
7316	ENST00000540906.1_3	ENST00000539008.6_6	chr11	61306987	61309731	AP003559.1	-	lncRNA	chr11	61281185	61348548	SYT7	-	protein_coding	2744	same	6268_ID	chr11	61306988	61309731	2744	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	13
7460	ENST00000548347.2_4	ENST00000548446.6_4	chr12	53907674	53911392	AC023509.2	+	lncRNA	chr12	53901639	54020154	ATF7	-	protein_coding	3718	opposite	1956_ID	chr12	53907675	53911392	3718	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	12	13
7491	ENST00000549448.1_1	ENST00000392876.8_4	chr12	104213387	104215863	AC012555.2	+	lncRNA	chr12	104166087	104235012	NT5DC3	-	protein_coding	2476	opposite	1406_ID	chr12	104213388	104215863	2476	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
7501	ENST00000549878.1_3	ENST00000295095.11_2	chr2	143919646	143929741	AC013437.1	-	lncRNA	chr2	143886987	144525921	ARHGAP15	+	protein_coding	10095	opposite	1441_ID	chr2	143919647	143929741	10095	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
7512	ENST00000550665.1	ENST00000675579.1_1	chr16	29496010	29517141	RP11-231C14.4	-	protein_coding	chr16	29454237	29625038	AC133555.6	-	lncRNA	22311	same	11885_ID	chr16	29496011	29517141	21131	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
7606	ENST00000554245.1_3	ENST00000402714.6_3	chr14	100519139	100541215	AL157912.1	-	lncRNA	chr14	100437785	100610573	EVL	+	protein_coding	22076	opposite	5086_ID	chr14	100519140	100541215	22076	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
7620	ENST00000554749.1_1	ENST00000473429.5_1	chr1	110600961	110605177	AL160006.1	+	lncRNA	chr1	110583792	110617263	STRIP1	+	retained_intron	4216	same	5129_ID	chr1	110600962	110605177	4216	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
7688	ENST00000556796.1_3	ENST00000298912.9_4	chr14	95651453	95652191	AL356017.1	-	lncRNA	chr14	95648276	95786245	CLMN	-	protein_coding	738	same	5367_ID	chr14	95651454	95652191	738	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	13	13
7693	ENST00000556978.1_3	ENST00000402714.6_3	chr14	100443451	100444435	AL133368.2	-	lncRNA	chr14	100437785	100610573	EVL	+	protein_coding	984	opposite	4847_ID	chr14	100443452	100444435	984	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
7707	ENST00000557371.1_3	ENST00000280979.9_4	chr14	32842542	32887169	AL136298.1	-	lncRNA	chr14	32798503	33306890	AKAP6	+	protein_coding	44638	opposite	4899_ID	chr14	32842543	32887169	44627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
7722	ENST00000557898.1_1	ENST00000261837.12_4	chr15	52416757	52431232	AC023906.4	+	lncRNA	chr15	52407296	52483589	GNB5	-	protein_coding	15686	opposite	1986_ID	chr15	52416758	52431232	14475	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	13
7727	ENST00000558010.1_3	ENST00000646247.2_2	chr15	69857062	69858129	AC100826.1	-	lncRNA	chr15	69755331	69988044	DRAIC	+	lncRNA	1067	opposite	3426_ID	chr15	69857063	69858129	1067	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	13
7795	ENST00000559509.1_1	ENST00000338564.9_4	chr15	37391539	37392374	AC078909.1	+	lncRNA	chr15	37181404	37393406	MEIS2	-	protein_coding	835	opposite	2602_ID	chr15	37391540	37392374	835	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	13
7811	ENST00000559825.1_1	ENST00000261837.12_4	chr15	52408770	52414328	AC023906.3	+	lncRNA	chr15	52407296	52483589	GNB5	-	protein_coding	5558	opposite	1985_ID	chr15	52408771	52414328	5558	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	13	13
7878	ENST00000561471.1_3	ENST00000395461.7_3	chr16	29000460	29002099	AC109460.4	-	lncRNA	chr16	28996146	29002104	LAT	+	protein_coding	1639	opposite	3764_ID	chr16	29000461	29002099	1639	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	13
7891	ENST00000561764.1_1	ENST00000261584.9_6	chr16	23617161	23635428	AC008870.4	+	lncRNA	chr16	23614485	23652631	PALB2	-	protein_coding	18267	opposite	821_ID	chr16	23617162	23635428	18267	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	13
7912	ENST00000562232.1_3	ENST00000342085.9_4	chr16	2619043	2621937	AC093525.4	-	lncRNA	chr16	2588021	2653189	PDPK1	+	protein_coding	2894	opposite	3216_ID	chr16	2619044	2621937	2894	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
7932	ENST00000562565.1_3	ENST00000567109.6_3	chr16	83416620	83431775	AC009142.1	-	lncRNA	chr16	82660573	83834245	CDH13	+	protein_coding	17609	opposite	906_ID	chr16	83416621	83431775	15155	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
7941	ENST00000562782.1_1	ENST00000649953.1_1	chr16	89179582	89181687	AC135782.3	-	lncRNA	chr16	89167069	89230529	ACSF3	+	nonsense_mediated_decay	2105	opposite	4143_ID	chr16	89179583	89181687	2105	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	13
7978	ENST00000563251.1_3	ENST00000568909.5_2	chr16	57655945	57665559	AC018552.3	-	lncRNA	chr16	57653909	57699492	ADGRG1	+	protein_coding	9614	opposite	1632_ID	chr16	57655946	57665559	9614	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
7980	ENST00000563342.1_1	ENST00000567109.6_3	chr16	83759280	83759982	AC009063.1	-	lncRNA	chr16	82660573	83834245	CDH13	+	protein_coding	702	opposite	851_ID	chr16	83759281	83759982	702	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
7985	ENST00000563416.3_3	ENST00000470044.5_3	chr16	1928285	1934232	LINC00254	-	lncRNA	chr16	1883987	1934295	MEIOB	-	protein_coding	5949	same	7535_ID	chr16	1928286	1934232	5947	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	13
7986	ENST00000563449.2_1	ENST00000342085.9_4	chr16	2604060	2606061	AC093525.6	-	lncRNA	chr16	2588021	2653189	PDPK1	+	protein_coding	2001	opposite	3218_ID	chr16	2604061	2606061	2001	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
7988	ENST00000563471.1_3	ENST00000300061.3_2	chr16	23206198	23224425	AC099482.1	-	lncRNA	chr16	23194065	23228204	SCNN1G	+	protein_coding	18227	opposite	3359_ID	chr16	23206199	23224425	18227	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	13
8006	ENST00000563780.1_3	ENST00000488350.6_3	chr3	49721912	49722416	AC099668.1	-	retained_intron	chr3	49721408	49726926	MST1	-	retained_intron	504	same	3385_ID	chr3	49721913	49722416	504	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	13
8029	ENST00000564401.1_1	ENST00000537232.5_3	chr15	56686518	56688983	AC084782.1	-	lncRNA	chr15	56657635	56738195	TEX9	+	protein_coding	2465	opposite	2759_ID	chr15	56686519	56688983	2465	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	13
8057	ENST00000564950.5_1	ENST00000675579.1_1	chr16	29466477	29476284	SLX1B-SULT1A4	+	retained_intron	chr16	29454237	29625038	AC133555.6	-	lncRNA	9859	opposite	12118_ID	chr16	29466478	29476284	9807	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
8070	ENST00000565238.1_3	ENST00000567109.6_3	chr16	82986834	83023903	AC125793.1	-	lncRNA	chr16	82660573	83834245	CDH13	+	protein_coding	37069	opposite	4020_ID	chr16	82986835	83023903	37069	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
8105	ENST00000565904.1	ENST00000567109.6_3	chr16	83743783	83751503	RP11-298D21.3	-	antisense	chr16	82660573	83834245	CDH13	+	protein_coding	7720	opposite	11889_ID	chr16	83743784	83751503	7720	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
8129	ENST00000566385.2_1	ENST00000643584.1_3	chr13	48504287	48506757	LINC00562	-	lncRNA	chr13	48319870	48575427	SUCLA2	-	nonsense_mediated_decay	2470	same	7563_ID	chr13	48504288	48506757	2470	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
8169	ENST00000567180.3_2	ENST00000377412.4	chr8	145321355	145323384	SCX	+	protein_coding	chr8	145317002	145331153	KM-PA-2	-	protein_coding	2029	opposite	12018_ID	chr8	145321356	145323384	2029	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
8180	ENST00000567359.1_1	ENST00000567109.6_3	chr16	82806923	82863243	AC099506.1	+	lncRNA	chr16	82660573	83834245	CDH13	+	protein_coding	68882	same	3367_ID	chr16	82806924	82863243	56320	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
8206	ENST00000568040.1_4	ENST00000342085.9_4	chr16	2621570	2622354	AC093525.3	-	lncRNA	chr16	2588021	2653189	PDPK1	+	protein_coding	784	opposite	3215_ID	chr16	2621571	2622354	784	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
8252	ENST00000569037.5_3	ENST00000570308.5_1	chr16	55461469	55496209	MMP2-AS1	-	lncRNA	chr16	55423611	55540149	MMP2	+	protein_coding	35501	opposite	9149_ID	chr16	55461470	55496209	34740	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
8261	ENST00000569218.1_1	ENST00000396573.6_3	chr16	10127540	10131154	AC133565.1	+	lncRNA	chr16	9847260	10276611	GRIN2A	-	protein_coding	3614	opposite	4115_ID	chr16	10127541	10131154	3614	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
8262	ENST00000569220.1_1	ENST00000342085.9_4	chr16	2604975	2606106	AC093525.5	+	lncRNA	chr16	2588021	2653189	PDPK1	+	protein_coding	1131	same	3217_ID	chr16	2604976	2606106	1131	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
8264	ENST00000569274.1_1	ENST00000258198.7_4	chr16	66754799	66765688	AC018557.1	+	lncRNA	chr16	66754795	66785512	DYNC1LI2	-	protein_coding	10889	opposite	1633_ID	chr16	66754800	66765688	10889	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	13
8293	ENST00000570247.1_3	ENST00000470044.5_3	chr16	1891020	1893548	AL031722.1	-	lncRNA	chr16	1883987	1934295	MEIOB	-	protein_coding	2528	same	4554_ID	chr16	1891021	1893548	2528	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	13
8301	ENST00000570413.1_1	ENST00000326724.9_5	chr17	79109570	79110056	AC115099.1	+	lncRNA	chr17	79091094	79140021	AATK	-	protein_coding	486	opposite	3884_ID	chr17	79109571	79110056	486	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
8335	ENST00000572195.3_3	ENST00000674200.2_2	chr17	1945315	1946719	OVCA2	+	protein_coding	chr17	1933430	1947192	DPH1	+	protein_coding	1404	same	9483_ID	chr17	1945316	1946719	1404	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	13	13
8337	ENST00000572404.1_3	ENST00000674200.2_2	chr17	1946193	1946719	AC090617.3	-	lncRNA	chr17	1933430	1947192	DPH1	+	protein_coding	526	opposite	2924_ID	chr17	1946194	1946719	526	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	13	13
8418	ENST00000576365.1_1	ENST00000262134.10_2	chr16	55572111	55575939	AC007336.1	+	lncRNA	chr16	55542983	55620578	LPCAT2	+	protein_coding	3828	same	545_ID	chr16	55572112	55575939	3828	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
8439	ENST00000577189.1_3	ENST00000284073.7_3	chr17	55599608	55600958	AC007431.2	-	lncRNA	chr17	55333883	55762050	MSI2	+	protein_coding	1350	opposite	574_ID	chr17	55599609	55600958	1350	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
8449	ENST00000577243.1	ENST00000542077.5_1	chr1	212250954	212251027	MIR3122	+	miRNA	chr1	212208894	212278348	DTL	+	protein_coding	73	same	8246_ID	chr1	212250955	212251027	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
8493	ENST00000577469.1	ENST00000454872.6_3	chr3	175087328	175087410	MIR4789	+	miRNA	chr3	174577123	175528336	NAALADL2	+	protein_coding	82	same	8775_ID	chr3	175087329	175087410	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
8512	ENST00000577587.1	ENST00000284073.7_3	chr17	55489271	55489562	RN7SL437P	-	misc_RNA	chr17	55333883	55762050	MSI2	+	protein_coding	291	opposite	10181_ID	chr17	55489272	55489562	291	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
8520	ENST00000577608.1	ENST00000635647.1_1	chr19	804939	805001	MIR4745	+	miRNA	chr19	797074	812327	PTBP1	+	protein_coding	62	same	8732_ID	chr19	804940	805001	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
8524	ENST00000577649.1_2	ENST00000315677.8_7	chr18	3878179	3897069	DLGAP1-AS3	+	lncRNA	chr18	3496029	4455307	DLGAP1	-	protein_coding	19012	opposite	6815_ID	chr18	3878180	3897069	18890	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	13
8587	ENST00000577933.1	ENST00000280979.9_4	chr14	32911546	32911843	RN7SL660P	+	misc_RNA	chr14	32798503	33306890	AKAP6	+	protein_coding	297	same	10346_ID	chr14	32911547	32911843	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
8598	ENST00000577980.1	ENST00000406470.6_4	chr7	8194565	8194652	AC007009.2	-	miRNA	chr7	8152816	8302242	ICA1	-	protein_coding	87	same	494_ID	chr7	8194566	8194652	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
8635	ENST00000578247.1	ENST00000675579.1_1	chr16	29610499	29610586	MIR3680-2	-	miRNA	chr16	29454237	29625038	AC133555.6	-	lncRNA	87	same	8384_ID	chr16	29610500	29610586	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
8665	ENST00000578422.1	ENST00000337537.8_5	chr14	63929723	63930021	RN7SL540P	+	misc_RNA	chr14	63838081	64010095	PPP2R5E	-	protein_coding	298	opposite	10262_ID	chr14	63929724	63930021	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
8682	ENST00000578538.1	ENST00000530562.5_3	chr11	74657025	74657123	AP001992.1	-	miRNA	chr11	74518783	74660225	XRRA1	-	nonsense_mediated_decay	98	same	6174_ID	chr11	74657026	74657123	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
8701	ENST00000578662.1_3	ENST00000284073.7_3	chr17	55678216	55685773	AC007431.1	-	lncRNA	chr17	55333883	55762050	MSI2	+	protein_coding	7557	opposite	573_ID	chr17	55678217	55685773	7557	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
8762	ENST00000579033.1_3	ENST00000584709.5_3	chr17	46454623	46457732	AC036222.2	-	lncRNA	chr17	46210806	46507637	SKAP1	-	nonsense_mediated_decay	3109	same	2275_ID	chr17	46454624	46457732	3109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
8764	ENST00000579044.1	ENST00000496930.5_1	chr17	44397044	44397325	RN7SL656P	+	misc_RNA	chr17	44370098	44415158	LRRC37A	+	protein_coding	281	same	10343_ID	chr17	44397045	44397325	281	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
8781	ENST00000579132.1	ENST00000505156.2_3	chr8	117299587	117299698	AF130343.1	+	miRNA	chr8	116962735	117337297	LINC00536	-	lncRNA	111	opposite	4391_ID	chr8	117299588	117299698	111	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
8873	ENST00000579680.1	ENST00000642319.1_3	chr1	180407448	180407525	MIR3121	-	miRNA	chr1	180238787	180472089	ACBD6	-	protein_coding	77	same	8245_ID	chr1	180407449	180407525	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
8880	ENST00000579713.1_3	ENST00000304621.10_2	chr18	21574176	21595303	TTC39C-AS1	-	lncRNA	chr18	21572736	21712991	TTC39C	+	protein_coding	21127	opposite	12812_ID	chr18	21574177	21595303	21127	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
8883	ENST00000579756.1	ENST00000567109.6_3	chr16	82878059	82878358	RN7SL134P	+	misc_RNA	chr16	82660573	83834245	CDH13	+	protein_coding	299	same	9970_ID	chr16	82878060	82878358	299	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
8904	ENST00000579844.1	ENST00000621282.4_3	chr13	50570550	50570637	MIR3613	-	miRNA	chr13	50556687	50699677	DLEU2	-	lncRNA	87	same	8346_ID	chr13	50570551	50570637	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
8942	ENST00000580062.5_1	ENST00000400100.5_1	chr15	25200150	25222997	SNURF	+	nonsense_mediated_decay	chr15	25068793	25223729	SNRPN	+	protein_coding	22865	same	12480_ID	chr15	25200151	25222997	22847	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	5	13
8983	ENST00000580330.1	ENST00000383024.6_1	chr22	20073268	20073356	MIR3618	+	miRNA	chr22	20067754	20099398	DGCR8	+	protein_coding	88	same	8353_ID	chr22	20073269	20073356	88	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	2	13
9015	ENST00000580502.1	ENST00000448507.5_2	chr4	6955015	6955101	AC092463.1	+	miRNA	chr4	6911170	7034845	TBC1D14	+	protein_coding	86	same	3097_ID	chr4	6955016	6955101	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
9033	ENST00000580587.1_3	ENST00000374825.9_3	chr6	32939841	32940630	AL645941.3	-	lncRNA	chr6	32936370	32949278	BRD2	+	protein_coding	789	opposite	5868_ID	chr6	32939842	32940630	789	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	2	13
9073	ENST00000580767.1	ENST00000403222.7_2	chr22	31127543	31127628	MIR3200	+	miRNA	chr22	31090192	31303811	OSBP2	+	protein_coding	85	same	8311_ID	chr22	31127544	31127628	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
9087	ENST00000580839.1	ENST00000567109.6_3	chr16	83541950	83542013	MIR3182	+	miRNA	chr16	82660573	83834245	CDH13	+	protein_coding	63	same	8297_ID	chr16	83541951	83542013	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
9101	ENST00000580906.1	ENST00000393104.6_1	chr10	112657847	112657913	MIR4680	+	miRNA	chr10	112631552	112659763	PDCD4	+	protein_coding	66	same	8667_ID	chr10	112657848	112657913	66	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	13	13
9114	ENST00000580962.1_1	ENST00000537526.6_4	chr17	20903059	20903636	AC087393.2	+	lncRNA	chr17	20902909	20947073	USP22	-	protein_coding	577	opposite	2814_ID	chr17	20903060	20903636	577	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	13	13
9132	ENST00000581069.1	ENST00000414423.9_6	chr1	224585928	224586013	MIR4742	-	miRNA	chr1	224572847	224622499	WDR26	-	protein_coding	85	same	8729_ID	chr1	224585929	224586013	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
9216	ENST00000581633.1_1	ENST00000401766.6_5	chr17	28531335	28533486	AC104984.1	+	lncRNA	chr17	28521336	28563020	SLC6A4	-	protein_coding	2151	opposite	3578_ID	chr17	28531336	28533486	2151	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
9245	ENST00000581803.1	ENST00000219611.7_2	chr16	585315	585368	MIR5587	+	miRNA	chr16	577711	604636	CAPN15	+	protein_coding	53	same	8940_ID	chr16	585316	585368	53	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
9272	ENST00000581909.1_3	ENST00000396987.7_2	chr8	41467210	41479021	AC009630.3	-	lncRNA	chr8	41435718	41482520	GPAT4	+	protein_coding	11811	opposite	981_ID	chr8	41467211	41479021	11811	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	13
9328	ENST00000582210.1	ENST00000219611.7_2	chr16	593276	593366	MIR3176	+	miRNA	chr16	577711	604636	CAPN15	+	protein_coding	90	same	8295_ID	chr16	593277	593366	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
9406	ENST00000582643.1	ENST00000371959.8_4	chrX	112023945	112024016	MIR4329	-	miRNA	chrX	112017730	112084117	AMOT	-	protein_coding	71	same	8521_ID	chrX	112023946	112024016	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
9493	ENST00000583113.1	ENST00000229812.8_4	chr6	36478293	36478375	Z85986.1	-	miRNA	chr6	36461668	36515256	STK38	-	protein_coding	82	same	12951_ID	chr6	36478294	36478375	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
9498	ENST00000583139.1	ENST00000469902.6_5	chr3	124870308	124870396	MIR5092	-	miRNA	chr3	124801487	124931592	SLC12A8	-	protein_coding	88	same	8833_ID	chr3	124870309	124870396	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
9514	ENST00000583214.1	ENST00000431992.5_4	chr1	33797993	33798093	MIR3605	-	miRNA	chr1	33789223	33841194	PHC2	-	protein_coding	100	same	8338_ID	chr1	33797994	33798093	100	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	13
9554	ENST00000583469.1	ENST00000375436.9_4	chr1	17740126	17740190	AC004824.1	-	miRNA	chr1	17733255	17766173	RCC2	-	protein_coding	64	same	171_ID	chr1	17740127	17740190	64	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	9	13
9561	ENST00000583502.1	ENST00000359600.6_4	chr1	45499640	45499692	AL359473.1	-	miRNA	chr1	45482070	45672277	ZSWIM5	-	protein_coding	52	same	5486_ID	chr1	45499641	45499692	52	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
9596	ENST00000583685.1	ENST00000281708.10_6	chr4	153410478	153410568	MIR3140	-	miRNA	chr4	153241695	153457244	FBXW7	-	protein_coding	90	same	8266_ID	chr4	153410479	153410568	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
9665	ENST00000584070.1	ENST00000357410.7_1	chr20	45795608	45795700	MIR3616	+	miRNA	chr20	45523262	45817492	EYA2	+	protein_coding	92	same	8351_ID	chr20	45795609	45795700	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
9684	ENST00000584165.1	ENST00000381869.5_5	chr8	17539086	17539166	MIR548V	-	miRNA	chr8	17501303	17658426	MTUS1	-	protein_coding	80	same	8918_ID	chr8	17539087	17539166	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
9696	ENST00000584249.1	ENST00000402714.6_3	chr14	100575755	100575851	MIR151B	-	miRNA	chr14	100437785	100610573	EVL	+	protein_coding	96	opposite	8106_ID	chr14	100575756	100575851	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
9827	ENST00000585005.1	ENST00000348849.8_4	chr2	161264320	161264393	MIR4785	-	miRNA	chr2	161128661	161350318	RBMS1	-	protein_coding	73	same	8772_ID	chr2	161264321	161264393	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
9853	ENST00000585120.1	ENST00000519148.5_3	chr8	144397090	144397176	AC087793.1	+	miRNA	chr8	144391529	144442147	TOP1MT	-	protein_coding	86	opposite	2852_ID	chr8	144397091	144397176	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
9862	ENST00000585186.1	ENST00000371088.5_2	chr1	63995287	63995569	RN7SL488P	-	misc_RNA	chr1	63989195	64038364	EFCAB7	+	protein_coding	282	opposite	10219_ID	chr1	63995288	63995569	282	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
10013	ENST00000588766.5_1	ENST00000420428.7_6	chr18	34853668	34856535	AC090386.1	+	lncRNA	chr18	34823002	35145761	CELF4	-	protein_coding	2867	opposite	2891_ID	chr18	34853669	34856535	2867	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	13
10024	ENST00000589281.2_1	ENST00000420428.7_6	chr18	34823738	34827469	AC015961.2	+	lncRNA	chr18	34823002	35145761	CELF4	-	protein_coding	3731	opposite	1510_ID	chr18	34823739	34827469	3731	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	13	13
10032	ENST00000589673.1_3	ENST00000591806.6_2	chr19	1376771	1377519	AC005329.2	-	lncRNA	chr19	1356312	1378430	PWWP3A	+	protein_coding	748	opposite	276_ID	chr19	1376772	1377519	748	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	13	13
10042	ENST00000590069.1_1	ENST00000023064.9_4	chr19	33322200	33324074	AC008805.2	+	lncRNA	chr19	33321416	33360673	SLC7A9	-	protein_coding	1874	opposite	817_ID	chr19	33322201	33324074	1874	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	12	13
10148	ENST00000593654.1_3	ENST00000601612.5_1	chr19	50360226	50362546	PTOV1-AS2	-	lncRNA	chr19	50353991	50363997	PTOV1	+	nonsense_mediated_decay	2320	opposite	9676_ID	chr19	50360227	50362546	2320	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	13
10240	ENST00000596631.1_1	ENST00000301194.8_1	chr19	54945362	54945845	AC245884.9	+	lncRNA	chr19	54926604	54948080	TTYH1	+	protein_coding	483	same	4315_ID	chr19	54945363	54945845	483	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
10262	ENST00000597049.1_3	ENST00000593532.5_1	chr19	50869136	50872588	AC008655.2	-	lncRNA	chr19	50832948	50886236	NR1H2	+	nonsense_mediated_decay	3452	opposite	765_ID	chr19	50869137	50872588	3452	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
10317	ENST00000598616.1_3	ENST00000478046.5_1	chr19	46893771	46894109	AC007193.3	-	lncRNA	chr19	46850357	46896238	PPP5C	+	nonsense_mediated_decay	338	opposite	522_ID	chr19	46893772	46894109	338	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
10349	ENST00000599584.1_3	ENST00000394456.10_4	chr19	6386772	6390411	AC011491.2	-	lncRNA	chr19	6379582	6393175	GTF2F1	-	protein_coding	3639	same	1250_ID	chr19	6386773	6390411	3639	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	13
10352	ENST00000599645.1_3	ENST00000478046.5_1	chr19	46885748	46886426	AC007193.1	-	lncRNA	chr19	46850357	46896238	PPP5C	+	nonsense_mediated_decay	678	opposite	520_ID	chr19	46885749	46886426	678	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
10373	ENST00000600473.1_3	ENST00000388749.7_4	chr19	39335368	39336139	AC008982.2	-	lncRNA	chr19	39327034	39342987	HNRNPL	-	nonsense_mediated_decay	771	same	841_ID	chr19	39335369	39336139	771	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
10401	ENST00000601211.1_3	ENST00000601612.5_1	chr19	50356143	50358224	AC018766.1	-	lncRNA	chr19	50353991	50363997	PTOV1	+	nonsense_mediated_decay	2081	opposite	1664_ID	chr19	50356144	50358224	2081	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	13
10409	ENST00000601483.1_1	ENST00000611875.5_5	chr16	140628	141100	Z69720.1	+	lncRNA	chr16	135384	188672	NPRL3	-	protein_coding	472	opposite	12933_ID	chr16	140629	141100	472	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
10423	ENST00000602042.1_1	ENST00000301030.10_5	chr16	89334511	89339452	AC137932.3	+	lncRNA	chr16	89334037	89556969	ANKRD11	-	protein_coding	4941	opposite	4171_ID	chr16	89334512	89339452	4941	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	12	13
10449	ENST00000602411.1_1	ENST00000673677.1_3	chr3	9977389	9977942	AC018809.1	+	lncRNA	chr3	9971535	9986679	AC018809.3	+	nonsense_mediated_decay	553	same	1668_ID	chr3	9977390	9977942	553	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	13
10566	ENST00000603720.1_3	ENST00000361492.9_3	chr2	121623952	121624978	AC017033.1	-	lncRNA	chr2	121493443	121750229	GLI2	+	protein_coding	1026	opposite	1599_ID	chr2	121623953	121624978	1026	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
10613	ENST00000604965.1_1	ENST00000425248.5_4	chr7	130147500	130148123	AC007938.3	+	lncRNA	chr7	130146078	130353588	COPG2	-	protein_coding	623	opposite	670_ID	chr7	130147501	130148123	623	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	13
10745	ENST00000606813.1_1	ENST00000381213.7_4	chr5	56223700	56225400	AC008937.3	+	lncRNA	chr5	56215429	56247952	MIER3	-	protein_coding	1700	opposite	834_ID	chr5	56223701	56225400	1700	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	13
10791	ENST00000607270.1_1	ENST00000343218.10_8	chr5	146781322	146781559	AC011373.1	+	lncRNA	chr5	146770370	146889631	DPYSL3	-	protein_coding	237	opposite	1199_ID	chr5	146781323	146781559	237	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
10806	ENST00000607368.1_1	ENST00000344683.10_3	chr8	6473124	6474719	AF287957.1	-	lncRNA	chr8	6264147	6506029	MCPH1	+	protein_coding	1595	opposite	4408_ID	chr8	6473125	6474719	1595	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
10849	ENST00000607720.1_1	ENST00000378531.8_5	chr1	2257639	2258132	AL589739.1	-	lncRNA	chr1	2252691	2322993	MORN1	-	protein_coding	493	same	5734_ID	chr1	2257640	2258132	493	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
10861	ENST00000607858.1_1	ENST00000378531.8_5	chr1	2294499	2295067	AL513477.2	-	lncRNA	chr1	2252691	2322993	MORN1	-	protein_coding	568	same	5712_ID	chr1	2294500	2295067	568	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
10927	ENST00000608547.2_1	ENST00000526589.5_1	chr1	236699461	236700004	AL359921.2	-	lncRNA	chr1	236681572	236716281	LGALS8	+	protein_coding	543	opposite	5506_ID	chr1	236699462	236700004	543	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
10974	ENST00000609162.1_1	ENST00000381669.8_5	chr22	38486133	38487566	AL022322.1	+	lncRNA	chr22	38480906	38506691	BAIAP2L2	-	protein_coding	1433	opposite	4475_ID	chr22	38486134	38487566	1433	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
11061	ENST00000610007.1_1	ENST00000450518.6_2	chr3	179302058	179302198	AC090425.2	-	lncRNA	chr3	179280673	179306195	ACTL6A	+	protein_coding	140	opposite	2893_ID	chr3	179302059	179302198	140	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
11067	ENST00000610052.1_1	ENST00000372842.5_6	chr9	131193876	131194285	AL359091.4	+	lncRNA	chr9	131174044	131199630	CERCAM	+	protein_coding	409	same	5471_ID	chr9	131193877	131194285	409	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
11070	ENST00000610062.1_1	ENST00000005260.9_4	chr7	97952164	97952742	AC093799.1	+	lncRNA	chr7	97920961	98030402	BAIAP2L1	-	protein_coding	578	opposite	3246_ID	chr7	97952165	97952742	578	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
11147	ENST00000611626.1_1	ENST00000570308.5_1	chr16	55459485	55460042	AC007336.2	-	lncRNA	chr16	55423611	55540149	MMP2	+	protein_coding	557	opposite	546_ID	chr16	55459486	55460042	557	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
11412	ENST00000618027.1_1	ENST00000566157.6_2	chr16	56499553	56500074	AC092140.2	-	lncRNA	chr16	56485465	56513016	OGFOD1	+	protein_coding	521	opposite	3062_ID	chr16	56499554	56500074	521	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	13
11495	ENST00000620019.1_1	ENST00000279024.9_7	chr20	36861652	36862201	AL031651.2	-	lncRNA	chr20	36838904	36889137	KIAA1755	-	protein_coding	549	same	4532_ID	chr20	36861653	36862201	549	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
11589	ENST00000621893.1_1	ENST00000642270.1_3	chr15	83209619	83231124	AC245033.2	+	lncRNA	chr15	83205538	83241944	AC245033.1	-	nonsense_mediated_decay	21505	opposite	4302_ID	chr15	83209620	83231124	21505	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	13
11628	ENST00000622689.1_1	ENST00000392982.8_2	chr10	116040483	116041017	AC005383.1	-	lncRNA	chr10	115999012	116054248	VWA2	+	protein_coding	534	opposite	290_ID	chr10	116040484	116041017	534	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
11647	ENST00000623440.1_1	ENST00000406477.7_1	chr22	44498658	44512112	AL033543.1	+	lncRNA	chr22	44395090	44564803	PARVB	+	protein_coding	13454	same	4580_ID	chr22	44498659	44512112	13454	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
11671	ENST00000623980.1_1	ENST00000406486.8_2	chr22	25448088	25461208	AL022323.3	-	lncRNA	chr22	25348696	25590424	KIAA1671	+	protein_coding	13120	opposite	4479_ID	chr22	25448089	25461208	13120	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
11678	ENST00000624101.1_1	ENST00000406486.8_2	chr22	25418560	25420619	AL022323.4	-	lncRNA	chr22	25348696	25590424	KIAA1671	+	protein_coding	2059	opposite	4480_ID	chr22	25418561	25420619	2059	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
11728	ENST00000625157.1_1	ENST00000438146.7_6	chr22	36388368	36396517	Z82217.1	+	lncRNA	chr22	36134782	36424872	RBFOX2	-	protein_coding	8149	opposite	12944_ID	chr22	36388369	36396517	8149	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
11735	ENST00000626127.2_4	ENST00000324631.13_3	chr10	18495055	18550121	AL390783.1	-	lncRNA	chr10	18429352	18832486	CACNB2	+	protein_coding	55378	opposite	5561_ID	chr10	18495056	18550121	55066	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
11826	ENST00000634357.1_1	ENST00000547717.1_1	chr12	53858251	53858841	PCBP2-OT1	+	lncRNA	chr12	53835524	53861312	AC023509.1	+	lncRNA	590	same	9508_ID	chr12	53858252	53858841	590	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	13
11853	ENST00000635976.1_2	ENST00000409359.7_3	chr2	131792664	131792835	SMIM39	+	protein_coding	chr2	131594486	131804826	ARHGEF4	+	protein_coding	171	same	12136_ID	chr2	131792665	131792835	171	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
11908	ENST00000640274.1_1	ENST00000380995.5_1	chr22	47309987	47311938	TBC1D22A-AS1	-	lncRNA	chr22	47158513	47571342	TBC1D22A	+	protein_coding	1951	opposite	12629_ID	chr22	47309988	47311938	1951	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	13
12016	ENST00000647563.2_5	ENST00000473429.5_1	chr1	110602491	110613294	ALX3	-	protein_coding	chr1	110583792	110617263	STRIP1	+	retained_intron	10803	opposite	5936_ID	chr1	110602492	110613294	10803	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
12103	ENST00000648881.1_1	ENST00000591834.1_3	chr12	53925535	54015002	AC023509.6	+	lncRNA	chr12	53900474	54019763	ATF7-NPFF	-	protein_coding	89467	opposite	1958_ID	chr12	53925536	54015002	89467	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	13
12135	ENST00000649470.1_1	ENST00000314144.10_4	chr17	33264324	33265623	AC022903.2	+	lncRNA	chr17	33254879	33288479	CCT6B	-	protein_coding	1299	opposite	1915_ID	chr17	33264325	33265623	1299	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
12197	ENST00000650908.1_2	ENST00000511616.5_3	chr5	9854532	9900082	LINC02221	+	lncRNA	chr5	9641426	9903938	LINC02112	-	lncRNA	45600	opposite	7749_ID	chr5	9854533	9900082	45550	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	13
12300	ENST00000652891.1_1	ENST00000315677.8_7	chr18	3962352	4014712	DLGAP1-AS4	+	lncRNA	chr18	3496029	4455307	DLGAP1	-	protein_coding	61798	opposite	6816_ID	chr18	3962353	4014712	52360	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	13
12314	ENST00000653203.1_1	ENST00000396573.6_3	chr16	9902712	9904583	AC007218.3	+	lncRNA	chr16	9847260	10276611	GRIN2A	-	protein_coding	1871	opposite	527_ID	chr16	9902713	9904583	1871	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
12375	ENST00000655053.1_4	ENST00000582328.5_2	chr17	56318524	56324746	AC004687.3	-	lncRNA	chr17	56295908	56345587	LPO	+	protein_coding	6222	opposite	155_ID	chr17	56318525	56324746	6222	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	13
12409	ENST00000655656.1_3	ENST00000358677.9_3	chr2	201255388	201342693	AC012459.1	-	lncRNA	chr2	201170708	201346986	SPATS2L	+	protein_coding	87353	opposite	1389_ID	chr2	201255389	201342693	87305	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	13
12464	ENST00000656814.1_3	ENST00000567109.6_3	chr16	82850435	82866602	AC099506.3	-	lncRNA	chr16	82660573	83834245	CDH13	+	protein_coding	16167	opposite	3368_ID	chr16	82850436	82866602	16167	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
12488	ENST00000657226.1_1	ENST00000535005.5_3	chr12	125271328	125293336	AC073593.2	+	lncRNA	chr12	125267228	125365007	SCARB1	-	processed_transcript	22008	opposite	2539_ID	chr12	125271329	125293336	22008	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	13
12502	ENST00000657577.1_1	ENST00000011619.6_4	chr6	13671951	13679140	Z93020.1	+	lncRNA	chr6	13621729	13712067	RANBP9	-	protein_coding	7189	opposite	12953_ID	chr6	13671952	13679140	7189	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
12509	ENST00000657687.1_4	ENST00000332981.10_2	chr14	62002110	62012202	AL355916.2	-	lncRNA	chr14	61788437	62017694	PRKCH	+	protein_coding	10100	opposite	5359_ID	chr14	62002111	62012202	10092	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
12678	ENST00000660920.1_1	ENST00000648217.1_3	chrX	3737964	3741939	BX842570.1	+	lncRNA	chrX	3735568	3821512	BX890604.1	-	lncRNA	3975	opposite	6459_ID	chrX	3737965	3741939	3975	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	13
12752	ENST00000662636.1_1	ENST00000261918.9_5	chr15	74721785	74723790	AC090826.3	+	lncRNA	chr15	74701629	74726299	SEMA7A	-	protein_coding	2005	opposite	2940_ID	chr15	74721786	74723790	2005	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
12762	ENST00000662823.1_3	ENST00000166345.8_2	chr5	904433	912702	AC122719.3	-	lncRNA	chr5	892998	918235	TRIP13	+	protein_coding	8269	opposite	3986_ID	chr5	904434	912702	8269	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	13
12805	ENST00000663662.1_1	ENST00000371839.6_6	chr1	49391692	49402406	AL645507.1	+	lncRNA	chr1	48998525	50489626	AGBL4	-	protein_coding	10714	opposite	5857_ID	chr1	49391693	49402406	10714	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	13
12851	ENST00000664676.1_1	ENST00000448507.5_2	chr4	6987652	6988763	AC097382.3	-	lncRNA	chr4	6911170	7034845	TBC1D14	+	protein_coding	1111	opposite	3311_ID	chr4	6987653	6988763	1111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
12871	ENST00000665042.1_4	ENST00000674237.1_2	chr12	65213958	65219735	AC025262.3	-	lncRNA	chr12	65153263	65272403	TBC1D30	+	protein_coding	5777	opposite	2067_ID	chr12	65213959	65219735	5777	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	13
12878	ENST00000665104.1_3	ENST00000284273.6_2	chr11	122550508	122552650	AP002762.3	-	lncRNA	chr11	122526429	122685181	UBASH3B	+	protein_coding	2142	opposite	6200_ID	chr11	122550509	122552650	2142	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
12879	ENST00000665127.1_3	ENST00000393446.6_6	chr7	116731731	116737316	AC002542.6	-	lncRNA	chr7	116593291	116870150	ST7	+	protein_coding	5585	opposite	61_ID	chr7	116731732	116737316	5585	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
12905	ENST00000665742.1_1	ENST00000636793.2_6	chr4	150298408	150301259	AC108168.1	+	lncRNA	chr4	150272860	150736995	IQCM	-	protein_coding	2851	opposite	3728_ID	chr4	150298409	150301259	2851	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	13
12910	ENST00000665797.1_3	ENST00000258198.7_4	chr16	66763054	66775319	AC018557.3	+	lncRNA	chr16	66754795	66785512	DYNC1LI2	-	protein_coding	12265	opposite	1636_ID	chr16	66763055	66775319	12265	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	13
12918	ENST00000666153.1_3	ENST00000272369.14_3	chr2	66668781	66671353	MEIS1-AS2	-	lncRNA	chr2	66662256	66801001	MEIS1	+	protein_coding	5134	opposite	7941_ID	chr2	66668782	66671353	2572	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	13
12933	ENST00000666473.1_1	ENST00000510784.8_4	chr6	25013212	25015924	AL160400.1	+	lncRNA	chr6	24839586	25042246	RIPOR2	-	protein_coding	2712	opposite	5142_ID	chr6	25013213	25015924	2712	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
12944	ENST00000666710.1_3	ENST00000354567.7_2	chr1	77896998	77903289	AC093575.1	-	lncRNA	chr1	77747703	78025651	AK5	+	protein_coding	6291	opposite	3221_ID	chr1	77896999	77903289	6291	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	13
12952	ENST00000666835.1_3	ENST00000454872.6_3	chr3	175191706	175195390	AC008180.3	-	lncRNA	chr3	174577123	175528336	NAALADL2	+	protein_coding	3684	opposite	713_ID	chr3	175191707	175195390	3684	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	13
12989	ENST00000667650.1_3	ENST00000377252.5_2	chr10	20384134	20388593	AC069549.2	-	lncRNA	chr10	20105360	20578785	PLXDC2	+	protein_coding	4540	opposite	2495_ID	chr10	20384135	20388593	4459	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	13
13097	ENST00000669902.1_1	ENST00000505156.2_3	chr8	117301856	117311192	AC090994.1	+	lncRNA	chr8	116962735	117337297	LINC00536	-	lncRNA	9336	opposite	2966_ID	chr8	117301857	117311192	9336	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
13100	ENST00000670012.1_3	ENST00000674200.2_2	chr17	1944246	1945226	AC090617.10	-	lncRNA	chr17	1933430	1947192	DPH1	+	protein_coding	980	opposite	2922_ID	chr17	1944247	1945226	980	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	13
13112	ENST00000670377.1_1	ENST00000367858.9_6	chr6	134617438	134625435	AL355881.1	+	lncRNA	chr6	134490383	134639196	SGK1	-	protein_coding	7997	opposite	5357_ID	chr6	134617439	134625435	7997	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
13128	ENST00000670781.1_3	ENST00000344683.10_3	chr8	6430091	6433740	AC018398.2	-	lncRNA	chr8	6264147	6506029	MCPH1	+	protein_coding	3649	opposite	1615_ID	chr8	6430092	6433740	3649	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
13162	ENST00000671401.1_3	ENST00000281708.10_6	chr4	153370273	153434940	AC023424.2	+	lncRNA	chr4	153241695	153457244	FBXW7	-	protein_coding	65514	opposite	1949_ID	chr4	153370274	153434940	64667	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	13
13172	ENST00000671560.1_1	ENST00000371839.6_6	chr1	49018662	49023778	AL391844.1	+	lncRNA	chr1	48998525	50489626	AGBL4	-	protein_coding	5116	opposite	5588_ID	chr1	49018663	49023778	5116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
13207	ENST00000675268.1_1	ENST00000675578.1_2	chr7	112090541	112090700	AC079741.2	+	protein_coding	chr7	112062941	112117211	IFRD1	+	protein_coding	159	same	2673_ID	chr7	112090542	112090700	159	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	13
13223	ENST00000678782.1_1	ENST00000323557.12_2	chr6	52930399	52930471	AL031178.2	+	protein_coding	chr6	52930201	52965671	FBXO9	+	protein_coding	72	same	4509_ID	chr6	52930400	52930471	72	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	13
54810	ENST00000329468.5_3	ENST00000652025.1_1	chr15	24920921	24928540	NPAP1	+	protein_coding	chr15	24803284	25068512	PWRN1	+	lncRNA	7619	same	9283_ID	chr15	24920922	24928540	7619	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	13
88510	ENST00000362775.1	ENST00000389156.9_4	chr5	74075133	74075238	RNU6-1330P	+	snRNA	chr5	74073398	74162791	FAM169A	-	protein_coding	105	opposite	11012_ID	chr5	74075134	74075238	105	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	13	13
14681	ENST00000370489.5_2	ENST00000649102.1_3	chr10	101419265	101470998	ENTPD7	+	protein_coding	chr10	101411351	101491869	AL133353.2	-	nonsense_mediated_decay	51733	opposite	6911_ID	chr10	101419266	101470998	51733	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	13
26831	ENST00000408175.1	ENST00000256324.15_3	chr14	91592768	91592897	SNORA11B	+	snoRNA	chr14	91580416	91691976	DGLUCY	+	protein_coding	129	same	12152_ID	chr14	91592769	91592897	129	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
51021	ENST00000459390.1	ENST00000610091.1	chr1	142653717	142653799	AL583842.1	+	miRNA	chr1	142620644	142729967	RP11-417J8.6	-	lincRNA	82	opposite	5724_ID	chr1	142653718	142653799	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
84071	ENST00000575593.1_1	ENST00000572919.1_5	chr17	3505054	3505566	AC027796.1	-	lncRNA	chr17	3488442	3539543	AC027796.3	-	nonsense_mediated_decay	512	same	2232_ID	chr17	3505055	3505566	512	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
89751	ENST00000580249.1	ENST00000610091.1	chr1	142653524	142653607	AL583842.3	+	miRNA	chr1	142620644	142729967	RP11-417J8.6	-	lincRNA	83	opposite	5728_ID	chr1	142653525	142653607	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
92551	ENST00000581818.1	ENST00000263847.6_4	chr11	59362549	59362631	MIR3162	-	miRNA	chr11	59341870	59383247	OSBP	-	protein_coding	82	same	8284_ID	chr11	59362550	59362631	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	13
93851	ENST00000582446.1	ENST00000610091.1	chr1	142656061	142656144	AL583842.2	+	miRNA	chr1	142620644	142729967	RP11-417J8.6	-	lincRNA	83	opposite	5726_ID	chr1	142656062	142656144	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
95011	ENST00000583126.1	ENST00000643029.1_7	chr9	130631693	130631774	MIR4672	-	miRNA	chr9	130630128	130668301	AL157935.2	-	nonsense_mediated_decay	81	same	8663_ID	chr9	130631694	130631774	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	13
96261	ENST00000583824.1	ENST00000256324.15_3	chr14	91614371	91614663	RN7SL506P	+	misc_RNA	chr14	91580416	91691976	DGLUCY	+	protein_coding	292	same	10238_ID	chr14	91614372	91614663	292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
96701	ENST00000584066.1	ENST00000610091.1	chr1	142667288	142667363	MIR3118-1	+	miRNA	chr1	142620644	142729967	RP11-417J8.6	-	lincRNA	75	opposite	8238_ID	chr1	142667289	142667363	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
98251	ENST00000584952.1_1	ENST00000285071.9_4	chr17	17138746	17139432	AC055811.3	-	lncRNA	chr17	17115525	17140482	FLCN	-	protein_coding	686	same	2336_ID	chr17	17138747	17139432	686	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
98291	ENST00000584986.1_3	ENST00000487527.5_1	chr17	27918720	27919259	AC104564.4	-	lncRNA	chr17	27916800	27941779	ANKRD13B	+	retained_intron	539	opposite	3556_ID	chr17	27918721	27919259	539	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
104291	ENST00000601906.2_1	ENST00000389919.8_1	chr11	58378591	58380115	AP001350.1	-	lncRNA	chr11	58346644	58392039	ZFP91-CNTF	+	nonsense_mediated_decay	1524	opposite	6120_ID	chr11	58378592	58380115	1524	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	13
105051	ENST00000602768.1_1	ENST00000426895.9_3	chr3	9854445	9854781	AC022382.1	-	lncRNA	chr3	9851671	9878038	TTLL3	+	protein_coding	336	opposite	1851_ID	chr3	9854446	9854781	336	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	13
122361	ENST00000651424.1_3	ENST00000439617.8_7	chr1	231903209	231983412	AL136171.2	-	lncRNA	chr1	231762535	232177018	DISC1	+	protein_coding	80243	opposite	4893_ID	chr1	231903210	231983412	80203	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	13
41431	ENST00000435116.1_3	ENST00000367097.8_2	chr6	158818916	158819593	AL360169.1	-	lncRNA	chr6	158733496	158932860	TULP4	+	protein_coding	677	opposite	5518_ID	chr6	158818917	158819593	677	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
112032	ENST00000612996.1_2	ENST00000430805.6_4	chr13	49106148	49106735	AL157813.1	-	lncRNA	chr13	49063105	49107392	RCBTB2	-	protein_coding	587	same	5070_ID	chr13	49106149	49106735	587	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	13
22	ENST00000218388.9_2	ENST00000295987.13_5	chrX	47441834	47446188	TIMP1	+	protein_coding	chrX	47431299	47479256	SYN1	-	protein_coding	4382	opposite	12699_ID	chrX	47441835	47446188	4354	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	12
30	ENST00000221671.8_3	ENST00000409035.1_3	chr19	16607204	16632163	C19orf44	+	protein_coding	chr19	16589877	16739015	AC008764.1	-	nonsense_mediated_decay	24959	opposite	6491_ID	chr19	16607205	16632163	24959	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	12
52	ENST00000229595.6_2	ENST00000316316.10_3	chr6	119215315	119230336	ASF1A	+	protein_coding	chr6	119134604	119256327	MCM9	-	protein_coding	15021	opposite	6355_ID	chr6	119215316	119230336	15021	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
82	ENST00000242323.8_2	ENST00000540557.1_3	chr9	37800550	37867663	DCAF10	+	protein_coding	chr9	37588409	38068684	AL138752.2	-	nonsense_mediated_decay	67113	opposite	6769_ID	chr9	37800551	37867663	67113	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	12
222	ENST00000278903.11_2	ENST00000648911.1_4	chr11	125439372	125454579	EI24	+	protein_coding	chr11	125312776	125462405	FEZ1	-	protein_coding	15404	opposite	6882_ID	chr11	125439373	125454579	15207	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	12
243	ENST00000284629.7_4	ENST00000673785.1_3	chr7	117003275	117067547	ASZ1	-	protein_coding	chr7	116927173	117188729	CFTR	+	protein_coding	64902	opposite	6360_ID	chr7	117003276	117067547	64272	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
266	ENST00000291481.8_4	ENST00000586064.3_3	chr19	19365564	19373613	HAPLN4	-	protein_coding	chr19	19365556	19384178	AC138430.1	-	retained_intron	8049	same	7215_ID	chr19	19365565	19373613	8049	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	12
277	ENST00000294117.6_2	ENST00000405837.5_3	chr11	62475147	62476673	GNG3	+	protein_coding	chr11	62457746	62476986	BSCL2	-	protein_coding	1526	opposite	7141_ID	chr11	62475148	62476673	1526	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	12
360	ENST00000306336.6_6	ENST00000459775.5_1	chr2	85832376	85839189	C2orf68	-	protein_coding	chr2	85829978	85876403	USP39	+	processed_transcript	6813	opposite	6509_ID	chr2	85832377	85839189	6813	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
441	ENST00000317114.2_2	ENST00000315677.8_7	chr18	3594100	3598350	DLGAP1-AS1	+	lncRNA	chr18	3496029	4455307	DLGAP1	-	protein_coding	4632	opposite	6813_ID	chr18	3594101	3598350	4250	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
515	ENST00000326524.7_7	ENST00000637595.1_1	chr5	37812778	37840143	GDNF	-	protein_coding	chr5	37811690	37874996	GDNF-AS1	+	lncRNA	27365	opposite	7113_ID	chr5	37812779	37840143	27365	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	12
552	ENST00000330271.6_3	ENST00000375238.8_5	chr20	32254303	32256331	ACTL10	+	protein_coding	chr20	32244892	32262269	NECAB3	-	protein_coding	2028	opposite	4342_ID	chr20	32254304	32256331	2028	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	12
585	ENST00000334325.2_2	ENST00000338458.8_3	chr3	57094691	57109460	SPATA12	+	protein_coding	chr3	56761445	57113336	ARHGEF3	-	protein_coding	14769	opposite	12507_ID	chr3	57094692	57109460	14769	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
595	ENST00000335934.8_3	ENST00000613899.4_3	chr2	24300302	24308085	TP53I3	-	protein_coding	chr2	24299751	24392507	FAM228B	+	protein_coding	8429	opposite	12762_ID	chr2	24300303	24308085	7783	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	12
706	ENST00000358065.4_1	ENST00000448413.5_3	chr3	4344987	4359251	SETMAR	+	protein_coding	chr3	3823035	4508945	SUMF1	-	nonsense_mediated_decay	14264	opposite	12044_ID	chr3	4344988	4359251	14264	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
724	ENST00000359838.3_1	ENST00000660355.1_3	chr6	147480060	147502128	LUADT1	+	lncRNA	chr6	147163049	147525691	STXBP5-AS1	-	lncRNA	22068	opposite	7881_ID	chr6	147480061	147502128	22068	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	12
758	ENST00000362134.1	ENST00000262291.9_2	chr17	57918626	57918698	MIR21	+	miRNA	chr17	57785014	57919616	VMP1	+	protein_coding	72	same	8172_ID	chr17	57918627	57918698	72	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	12	12
843	ENST00000362507.1	ENST00000458657.6_5	chr1	45187457	45187574	RNU5F-1	-	snRNA	chr1	45140384	45191263	ARMH1	+	protein_coding	117	opposite	10751_ID	chr1	45187458	45187574	117	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
847	ENST00000362541.1	ENST00000371589.9_2	chr9	139988796	139988882	SNORD62	+	snoRNA	chr9	139981436	140003635	MAN1B1	+	protein_coding	86	same	12436_ID	chr9	139988797	139988882	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
885	ENST00000362802.1	ENST00000344517.5_4	chr1	229670810	229670936	RNU4-21P	-	snRNA	chr1	229652328	229694454	ABCB10	-	protein_coding	126	same	10664_ID	chr1	229670811	229670936	126	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	12
1080	ENST00000363862.1	ENST00000368468.4_4	chr6	119648445	119648550	RNU6-194P	+	snRNA	chr6	119498369	119670926	MAN1A1	-	protein_coding	105	opposite	11061_ID	chr6	119648446	119648550	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
1087	ENST00000363909.1	ENST00000410075.5_1	chr2	71606884	71606988	RNU6-105P	-	snRNA	chr2	71503722	71622800	ZNF638	+	protein_coding	104	opposite	10806_ID	chr2	71606885	71606988	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
1093	ENST00000363929.1	ENST00000368977.9_2	chr6	108713276	108713381	RNU6-770P	+	snRNA	chr6	108616257	108847204	AFG1L	+	protein_coding	105	same	11490_ID	chr6	108713277	108713381	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	12
1180	ENST00000364419.1	ENST00000299345.10_3	chr16	61777057	61777380	RN7SKP76	-	misc_RNA	chr16	61681145	62070739	CDH8	-	protein_coding	323	same	9920_ID	chr16	61777058	61777380	323	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
1229	ENST00000364674.1	ENST00000261461.7_3	chr1	212526157	212526292	SNORA16B	+	snoRNA	chr1	212458751	212535195	PPP2R5A	+	protein_coding	135	same	12161_ID	chr1	212526158	212526292	135	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
1240	ENST00000364716.1	ENST00000531428.1_3	chr11	17137198	17137310	RNU6-593P	-	snRNA	chr11	17099276	17229467	PIK3C2A	-	processed_transcript	112	same	11363_ID	chr11	17137199	17137310	112	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
1313	ENST00000365097.1	ENST00000023064.9_4	chr19	33353705	33353998	RN7SKP22	-	misc_RNA	chr19	33321416	33360673	SLC7A9	-	protein_coding	293	same	9829_ID	chr19	33353706	33353998	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
1374	ENST00000365530.1	ENST00000461347.5_3	chr2	232325081	232325151	SNORD82	-	snoRNA	chr2	232319618	232348352	NCL	-	retained_intron	70	same	12449_ID	chr2	232325082	232325151	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	12
1404	ENST00000366153.2_3	ENST00000401408.6_4	chr2	55441522	55443262	AC012358.1	-	lncRNA	chr2	55399682	55459429	CLHC1	-	protein_coding	1740	same	1366_ID	chr2	55441523	55443262	1740	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
1412	ENST00000366425.4_2	ENST00000431044.5_2	chr22	19711061	19712294	GP1BB	+	protein_coding	chr22	19705991	19712295	AC000093.1	+	nonsense_mediated_decay	1233	same	7146_ID	chr22	19711062	19712294	1233	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	12
1566	ENST00000377765.8_2	ENST00000540557.1_3	chr9	37650950	37746901	FRMPD1	+	protein_coding	chr9	37588409	38068684	AL138752.2	-	nonsense_mediated_decay	95951	opposite	7082_ID	chr9	37650951	37746901	95951	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	12
1615	ENST00000380712.7_1	ENST00000337414.9_4	chrX	11311532	11318881	AMELX	+	protein_coding	chrX	11155663	11684040	ARHGAP6	-	protein_coding	7349	opposite	5937_ID	chrX	11311533	11318881	7349	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
1631	ENST00000381883.5_3	ENST00000485616.5_3	chr9	4662293	4665258	PLPP6	+	protein_coding	chr9	4553385	4666508	SPATA6L	-	nonsense_mediated_decay	2965	opposite	9586_ID	chr9	4662294	4665258	2965	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
1641	ENST00000383263.7_3	ENST00000675287.1_1	chr15	34260697	34359659	CHRM5	+	protein_coding	chr15	34150982	34367356	AVEN	-	processed_transcript	98962	opposite	6650_ID	chr15	34260698	34359659	98962	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	12
1654	ENST00000383877.1	ENST00000489671.6_5	chr3	141864295	141864397	RNU6-425P	+	snRNA	chr3	141663269	141868386	TFDP2	-	protein_coding	102	opposite	11227_ID	chr3	141864296	141864397	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
1736	ENST00000384091.1	ENST00000649225.1_2	chr7	79541419	79541524	RNU6-849P	-	snRNA	chr7	79397365	79847403	GNAI1	+	protein_coding	105	opposite	11553_ID	chr7	79541420	79541524	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
1794	ENST00000384264.1	ENST00000396879.8_7	chr15	43929829	43929936	RNU6-610P	-	snRNA	chr15	43920700	43941042	CATSPER2	-	protein_coding	107	same	11379_ID	chr15	43929830	43929936	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
1843	ENST00000384424.1	ENST00000313421.11_3	chr11	60752532	60752639	RNU6-933P	-	snRNA	chr11	60739151	60787849	CD6	+	protein_coding	107	opposite	11619_ID	chr11	60752533	60752639	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
1895	ENST00000384548.1	ENST00000315677.8_7	chr18	3894698	3894805	RNU6-831P	-	snRNA	chr18	3496029	4455307	DLGAP1	-	protein_coding	107	same	11538_ID	chr18	3894699	3894805	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
1899	ENST00000384550.1	ENST00000461347.5_3	chr2	232321154	232321234	SNORD20	-	snoRNA	chr2	232319618	232348352	NCL	-	retained_intron	80	same	12388_ID	chr2	232321155	232321234	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
1922	ENST00000384608.1	ENST00000324698.11_4	chr7	123098041	123098148	RNU6-296P	-	snRNA	chr7	123092246	123174649	IQUB	-	protein_coding	107	same	11136_ID	chr7	123098042	123098148	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	12
1933	ENST00000384632.1	ENST00000468709.5_4	chr10	102018327	102018434	RNU6-422P	+	snRNA	chr10	101992054	102027437	CWF19L1	-	nonsense_mediated_decay	107	opposite	11224_ID	chr10	102018328	102018434	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
2059	ENST00000384899.1	ENST00000424901.5_4	chr19	40788449	40788548	MIR641	-	miRNA	chr19	40736224	40791302	AKT2	-	protein_coding	99	same	9049_ID	chr19	40788450	40788548	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
2129	ENST00000385036.1	ENST00000675478.1_1	chr3	114035321	114035416	MIR568	-	miRNA	chr3	114033346	114866135	ZBTB20	-	protein_coding	95	same	8952_ID	chr3	114035322	114035416	95	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	12	12
2269	ENST00000386910.1	ENST00000428358.5_4	chr19	10218326	10218411	SNORD105	+	snoRNA	chr19	10216898	10225456	PPAN-P2RY11	+	protein_coding	85	same	12226_ID	chr19	10218327	10218411	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
2276	ENST00000388909.5_4	ENST00000646076.1_3	chr16	67648283	67650049	AC009095.1	-	lncRNA	chr16	67596369	67673079	CTCF	+	protein_coding	1766	opposite	874_ID	chr16	67648284	67650049	1766	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	12
2312	ENST00000390235.1	ENST00000475045.6_4	chr21	37093012	37093106	MIR802	+	miRNA	chr21	36259342	37376965	RUNX1	-	protein_coding	94	opposite	9091_ID	chr21	37093013	37093106	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	12
2329	ENST00000390712.2	ENST00000392825.8_2	chr2	155088230	155088342	AC009297.1	+	miRNA	chr2	154728434	155310491	GALNT13	+	protein_coding	112	same	940_ID	chr2	155088231	155088342	112	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
2363	ENST00000390884.1	ENST00000677148.1_1	chr17	20029700	20029801	RNU6-258P	-	snRNA	chr17	19912177	20218048	SPECC1	+	protein_coding	101	opposite	11108_ID	chr17	20029701	20029801	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
2435	ENST00000391167.1	ENST00000648772.1_3	chr17	54948530	54948637	RNU6-1158P	+	snRNA	chr17	54913747	54991441	TRIM25	-	nonsense_mediated_decay	107	opposite	10865_ID	chr17	54948531	54948637	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
2486	ENST00000394552.3_2	ENST00000335574.10_3	chr20	30135214	30135884	MCTS2P	+	protein_coding	chr20	30102212	30157370	HM13	+	protein_coding	670	same	7933_ID	chr20	30135215	30135884	670	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
2515	ENST00000397389.6_1	ENST00000542678.5_6	chr12	123459126	123464589	OGFOD2	+	protein_coding	chr12	123413546	123466196	ABCB9	-	protein_coding	5464	opposite	9327_ID	chr12	123459127	123464589	5463	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	12
2517	ENST00000397572.5_6	ENST00000622355.1_3	chr1	39328164	39339020	MYCBP	-	protein_coding	chr1	39305004	39340166	AL139260.2	-	lncRNA	10876	same	9192_ID	chr1	39328165	39339020	10856	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	12
2566	ENST00000401154.1	ENST00000345739.9_3	chr2	176032360	176032437	MIR933	-	miRNA	chr2	175936977	176032934	ATF2	-	protein_coding	77	same	9109_ID	chr2	176032361	176032437	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
2631	ENST00000405109.5_2	ENST00000648300.1_3	chr3	127634074	127706509	KBTBD12	+	protein_coding	chr3	127410974	127771033	MGLL	-	protein_coding	72440	opposite	7396_ID	chr3	127634075	127706509	72435	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
2668	ENST00000408135.1	ENST00000329276.10_2	chr20	2633422	2633488	MIR1292	+	miRNA	chr20	2633277	2639039	NOP56	+	protein_coding	66	same	8057_ID	chr20	2633423	2633488	66	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	12
2694	ENST00000408229.1	ENST00000399034.7_2	chr7	35882498	35882583	AC007551.1	+	miRNA	chr7	35840541	35946715	SEPTIN7	+	protein_coding	85	same	595_ID	chr7	35882499	35882583	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
2717	ENST00000408286.2	ENST00000372544.6_3	chrX	105883043	105883126	MIR548AN	+	miRNA	chrX	105855159	105922667	RADX	+	protein_coding	83	same	8879_ID	chrX	105883044	105883126	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
2791	ENST00000408466.1	ENST00000417496.6_1	chr7	18166842	18166932	MIR1302-6	-	miRNA	chr7	18126571	18706546	HDAC9	+	protein_coding	90	opposite	8072_ID	chr7	18166843	18166932	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
2808	ENST00000408509.1	ENST00000515518.6_3	chr5	109849529	109849616	MIR548F3	-	miRNA	chr5	109753378	110062372	TMEM232	-	processed_transcript	87	same	8896_ID	chr5	109849530	109849616	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
2829	ENST00000408549.1	ENST00000409931.7_4	chr15	78330872	78330937	MIR1827	+	miRNA	chr15	78287327	78370066	TBC1D2B	-	protein_coding	65	opposite	8128_ID	chr15	78330873	78330937	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
2928	ENST00000408778.1	ENST00000335504.9_4	chrX	51806442	51806570	SNORA11E	-	snoRNA	chrX	51804922	51812344	MAGED4B	-	protein_coding	128	same	12155_ID	chrX	51806443	51806570	128	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
3028	ENST00000410189.1	ENST00000308191.11_4	chr6	136298948	136299041	AL512290.1	-	miRNA	chr6	136172838	136516712	PDE7B	+	protein_coding	93	opposite	5679_ID	chr6	136298949	136299041	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
3033	ENST00000410237.1	ENST00000397149.4_4	chr9	33042106	33042214	AL162590.1	-	miRNA	chr9	33041762	33076672	SMU1	-	protein_coding	108	same	5211_ID	chr9	33042107	33042214	108	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	12	12
3041	ENST00000410281.1	ENST00000333677.7_2	chr5	148986199	148986304	RNU6-588P	-	snRNA	chr5	148961060	149014531	ARHGEF37	+	protein_coding	105	opposite	11359_ID	chr5	148986200	148986304	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
3072	ENST00000410416.1	ENST00000256458.5_2	chr3	10258895	10259003	RNU6-814P	+	snRNA	chr3	10206602	10285429	IRAK2	+	protein_coding	108	same	11522_ID	chr3	10258896	10259003	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
3115	ENST00000410567.1	ENST00000356539.8_2	chr3	156735130	156735485	RN7SKP177	+	misc_RNA	chr3	156544095	156763918	LEKR1	+	protein_coding	355	same	9805_ID	chr3	156735131	156735485	355	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
3178	ENST00000410912.1	ENST00000298282.14_2	chr11	125147447	125147553	RNU6-321P	+	snRNA	chr11	125034646	125303285	PKNOX2	+	protein_coding	106	same	11153_ID	chr11	125147448	125147553	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
3206	ENST00000411054.1	ENST00000602567.1_1	chr1	231806380	231806496	RNU5A-5P	+	snRNA	chr1	231664398	231954990	TSNAX-DISC1	+	nonsense_mediated_decay	116	same	10736_ID	chr1	231806381	231806496	116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	12
3213	ENST00000411098.1	ENST00000417496.6_1	chr7	18336961	18337059	AC091697.1	+	miRNA	chr7	18126571	18706546	HDAC9	+	protein_coding	98	same	3008_ID	chr7	18336962	18337059	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
3251	ENST00000411349.1	ENST00000523601.5_3	chr8	99933460	99933778	RN7SKP85	-	misc_RNA	chr8	99466922	99954799	STK3	-	protein_coding	318	same	9927_ID	chr8	99933461	99933778	318	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
3285	ENST00000411797.1_3	ENST00000417496.6_1	chr7	18468684	18470361	AC010082.1	-	lncRNA	chr7	18126571	18706546	HDAC9	+	protein_coding	1677	opposite	1019_ID	chr7	18468685	18470361	1677	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
3287	ENST00000411824.1_3	ENST00000217159.6_3	chr20	61294370	61298076	SLCO4A1-AS1	-	lncRNA	chr20	61273854	61303645	SLCO4A1	+	protein_coding	3706	opposite	12110_ID	chr20	61294371	61298076	3706	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	12
3316	ENST00000412240.1_3	ENST00000475045.6_4	chr21	37085436	37105240	AF015720.1	-	lncRNA	chr21	36259342	37376965	RUNX1	-	protein_coding	19804	same	4367_ID	chr21	37085437	37105240	19804	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	12
3365	ENST00000413504.1	ENST00000577456.1	chr22	20644407	20645991	AC011718.3	+	lincRNA	chr22	20632022	20656899	AC011718.2	-	lincRNA	1584	opposite	1284_ID	chr22	20644408	20645991	1584	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	12
3373	ENST00000413987.1_2	ENST00000398958.6_1	chr1	28832491	28837404	SNHG3	+	lncRNA	chr1	28832454	28865708	RCC1	+	protein_coding	4913	same	12148_ID	chr1	28832492	28837404	4913	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	12
3517	ENST00000417463.1_3	ENST00000451257.5_1	chr22	21532180	21534164	AP000550.2	-	lncRNA	chr22	21522046	21546445	FAM230B	+	lncRNA	1984	opposite	5998_ID	chr22	21532181	21534164	1984	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	12
3583	ENST00000419415.1_1	ENST00000368173.7_1	chr1	157995339	158000956	KIRREL1-IT1	+	lncRNA	chr1	157963062	158070051	KIRREL1	+	protein_coding	5617	same	7446_ID	chr1	157995340	158000956	5617	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
3683	ENST00000421894.1_1	ENST00000335574.10_3	chr20	30150968	30151879	HM13-IT1	+	lncRNA	chr20	30102212	30157370	HM13	+	protein_coding	911	same	7243_ID	chr20	30150969	30151879	911	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
3693	ENST00000422107.1_3	ENST00000370950.7_2	chr1	70684271	70686706	AL353771.1	-	lncRNA	chr1	70671406	70718735	SRSF11	+	protein_coding	2435	opposite	5263_ID	chr1	70684272	70686706	2435	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
3789	ENST00000424580.1_3	ENST00000313237.10_5	chr22	45396445	45399500	AL079301.1	-	lncRNA	chr22	45277041	45405886	PHF21B	-	protein_coding	3055	same	4672_ID	chr22	45396446	45399500	3055	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
3790	ENST00000424613.1_4	ENST00000644076.1_3	chr22	42377307	42378221	Z99716.1	-	lncRNA	chr22	42365478	42394225	SEPTIN3	+	protein_coding	914	opposite	12989_ID	chr22	42377308	42378221	914	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	12
3791	ENST00000424630.1_4	ENST00000430044.7_3	chr7	151817085	151818802	AC006017.1	-	lncRNA	chr7	151722758	151819425	GALNT11	+	protein_coding	1717	opposite	395_ID	chr7	151817086	151818802	1717	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	12
3816	ENST00000425189.1_3	ENST00000393056.8_3	chr9	136519707	136522435	DBH-AS1	-	lncRNA	chr9	136501484	136524451	DBH	+	protein_coding	2728	opposite	6768_ID	chr9	136519708	136522435	2728	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	12
3836	ENST00000425746.2_3	ENST00000619574.4_3	chr20	21132308	21143531	AL121759.1	-	lncRNA	chr20	21106623	21227256	KIZ	+	protein_coding	14150	opposite	4747_ID	chr20	21132309	21143531	11223	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	12
4061	ENST00000432858.1_3	ENST00000471642.6_3	chr1	155679888	155680354	AL162734.1	-	lncRNA	chr1	155657757	155708317	DAP3	+	protein_coding	466	opposite	5222_ID	chr1	155679889	155680354	466	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
4123	ENST00000434730.1_1	ENST00000447720.5_3	chr22	21667208	21669193	AP000552.2	+	lncRNA	chr22	21655278	21679331	FAM230H	-	lncRNA	1985	opposite	5999_ID	chr22	21667209	21669193	1985	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	12
4124	ENST00000434741.1_1	ENST00000608642.6_5	chr22	33560048	33562425	Z82198.2	+	lncRNA	chr22	33558211	34157463	LARGE1	-	protein_coding	2377	opposite	12940_ID	chr22	33560049	33562425	2377	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	12	12
4127	ENST00000434786.2_1	ENST00000410075.5_1	chr2	71601067	71603450	AC007878.1	+	lncRNA	chr2	71503722	71622800	ZNF638	+	protein_coding	2383	same	653_ID	chr2	71601068	71603450	2383	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
4230	ENST00000437400.2_3	ENST00000370017.9_3	chr1	109276877	109277347	AL591719.2	-	lncRNA	chr1	109255529	109285371	FNDC7	+	protein_coding	470	opposite	5796_ID	chr1	109276878	109277347	470	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
4270	ENST00000438677.2_4	ENST00000650816.1_1	chrY	8550634	8569018	TTTY18	-	lncRNA	chrY	8451494	8581866	LINC00279	+	lncRNA	18384	opposite	12815_ID	chrY	8550635	8569018	18384	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	12
4298	ENST00000439319.5_3	ENST00000539911.5_3	chr10	18290714	18299491	SLC39A12-AS1	-	lncRNA	chr10	18240767	18332221	SLC39A12	+	protein_coding	8777	opposite	12096_ID	chr10	18290715	18299491	8777	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	12
4369	ENST00000441270.6_3	ENST00000313949.11_1	chr20	57438582	57463847	AL121917.1	-	lncRNA	chr20	57414772	57486247	GNAS	+	protein_coding	25282	opposite	4772_ID	chr20	57438583	57463847	25265	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
4384	ENST00000441882.1_4	ENST00000536621.5_2	chr7	100657600	100660889	MUC12-AS1	-	lncRNA	chr7	100612903	100662230	MUC12	+	protein_coding	3289	opposite	9185_ID	chr7	100657601	100660889	3289	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	12
4421	ENST00000442785.1_1	ENST00000270172.7_4	chr21	45670695	45671403	DNMT3L-AS1	+	lncRNA	chr21	45666221	45682099	DNMT3L	-	protein_coding	708	opposite	6832_ID	chr21	45670696	45671403	708	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	12
4430	ENST00000443008.1_3	ENST00000331565.5_2	chr1	110709428	110715111	SLC6A17-AS1	-	lncRNA	chr1	110693115	110744824	SLC6A17	+	protein_coding	6542	opposite	12104_ID	chr1	110709429	110715111	5683	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	12
4494	ENST00000445240.1_1	ENST00000378933.5_5	chrX	30872437	30872824	TAB3-AS2	+	lncRNA	chrX	30845558	30993201	TAB3	-	protein_coding	387	opposite	12594_ID	chrX	30872438	30872824	387	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	7	12
4555	ENST00000446847.1_1	ENST00000261461.7_3	chr1	212470789	212472921	AL360091.2	+	lncRNA	chr1	212458751	212535195	PPP2R5A	+	protein_coding	2132	same	5514_ID	chr1	212470790	212472921	2132	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
4595	ENST00000447949.1_1	ENST00000261461.7_3	chr1	212530759	212531695	AL360091.1	+	lncRNA	chr1	212458751	212535195	PPP2R5A	+	protein_coding	936	same	5513_ID	chr1	212530760	212531695	936	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	12
4597	ENST00000448058.1_3	ENST00000602567.1_1	chr1	231727037	231747836	LINC00582	-	lncRNA	chr1	231664398	231954990	TSNAX-DISC1	+	nonsense_mediated_decay	20799	opposite	7565_ID	chr1	231727038	231747836	20799	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	12
4660	ENST00000449963.1_1	ENST00000650665.1_1	chrY	9650923	9655122	AC010891.1	+	lncRNA	chrY	9621980	9671504	TTTY22	+	lncRNA	4199	same	1156_ID	chrY	9650924	9655122	4199	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	12
4691	ENST00000451035.2_1	ENST00000323084.9_7	chr21	45926689	45936458	TSPEAR-AS1	+	lncRNA	chr21	45917775	46131487	TSPEAR	-	protein_coding	9769	opposite	12799_ID	chr21	45926690	45936458	9769	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	12
4709	ENST00000451355.2_1	ENST00000379938.7_6	chr6	7183315	7185520	AL355336.1	+	lncRNA	chr6	7108193	7252213	RREB1	+	protein_coding	2205	same	5334_ID	chr6	7183316	7185520	2205	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
4733	ENST00000451776.1_1	ENST00000612501.2_4	chr17	48212950	48223541	AC002401.1	+	lncRNA	chr17	48211100	48228038	PPP1R9B	-	protein_coding	10591	opposite	47_ID	chr17	48212951	48223541	10591	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	12
4810	ENST00000453955.1_1	ENST00000650816.1_1	chrY	8572512	8573324	TTTY19	+	lncRNA	chrY	8451494	8581866	LINC00279	+	lncRNA	812	same	12816_ID	chrY	8572513	8573324	812	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	12
4816	ENST00000454086.2_3	ENST00000527636.7_6	chr11	12942732	12944472	AC013549.1	-	lncRNA	chr11	12695967	12966284	TEAD1	+	protein_coding	1740	opposite	1450_ID	chr11	12942733	12944472	1740	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
4846	ENST00000455028.1_1	ENST00000475045.6_4	chr21	36508934	36511519	AF015262.1	+	lncRNA	chr21	36259342	37376965	RUNX1	-	protein_coding	2585	opposite	4366_ID	chr21	36508935	36511519	2585	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	12
4916	ENST00000456782.1_1	ENST00000439617.8_7	chr1	232061579	232080979	DISC1-IT1	+	lncRNA	chr1	231762535	232177018	DISC1	+	protein_coding	19400	same	6807_ID	chr1	232061580	232080979	19400	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	12
4941	ENST00000457319.1_3	ENST00000319550.9_2	chr6	116565349	116565891	AL050331.2	-	lncRNA	chr6	116422015	116570660	NT5DC1	+	protein_coding	542	opposite	4654_ID	chr6	116565350	116565891	542	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	12	12
4951	ENST00000457499.1_1	ENST00000676185.1_1	chr5	60213316	60215400	ERCC8-AS1	+	lncRNA	chr5	60162280	60240897	ERCC8	-	protein_coding	2084	opposite	6919_ID	chr5	60213317	60215400	2084	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	12
4990	ENST00000458770.1	ENST00000428358.5_4	chr19	10220432	10220511	SNORD105B	+	snoRNA	chr19	10216898	10225456	PPAN-P2RY11	+	protein_coding	79	same	12228_ID	chr19	10220433	10220511	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	12
5092	ENST00000459349.1	ENST00000341772.5_4	chr2	230470953	230471015	RNU7-9P	+	snRNA	chr2	230222344	230579271	DNER	-	protein_coding	62	opposite	11824_ID	chr2	230470954	230471015	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
5146	ENST00000459965.2_3	ENST00000519416.5_3	chr8	38702383	38703957	AC067817.2	-	lncRNA	chr8	38585703	38708311	TACC1	+	protein_coding	1574	opposite	2376_ID	chr8	38702384	38703957	1574	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	12
5181	ENST00000462264.2	ENST00000315677.8_7	chr18	3571213	3571509	RN7SL39P	-	misc_RNA	chr18	3496029	4455307	DLGAP1	-	protein_coding	296	same	10158_ID	chr18	3571214	3571509	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
5198	ENST00000463508.2	ENST00000648797.1_1	chr9	79186730	79186787	AL161626.1	+	miRNA	chr9	79074198	79266119	GCNT1	+	processed_transcript	57	same	5150_ID	chr9	79186731	79186787	57	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
5210	ENST00000464472.2	ENST00000267260.5_2	chr12	119431661	119431956	RN7SL508P	+	misc_RNA	chr12	119419345	119600856	SRRM4	+	protein_coding	295	same	10239_ID	chr12	119431662	119431956	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
5233	ENST00000465978.1_1	ENST00000323084.9_7	chr21	45937502	45945835	TSPEAR-AS2	+	lncRNA	chr21	45917775	46131487	TSPEAR	-	protein_coding	8737	opposite	12800_ID	chr21	45937503	45945835	8333	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	12
5271	ENST00000468562.2	ENST00000519728.6_3	chr8	56892800	56893096	RN7SL798P	-	misc_RNA	chr8	56792393	56926728	LYN	+	protein_coding	296	opposite	10440_ID	chr8	56892801	56893096	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
5397	ENST00000476398.2	ENST00000367771.11_6	chr1	169828896	169829193	RN7SL333P	+	misc_RNA	chr1	169818771	169863037	SCYL3	-	protein_coding	297	opposite	10112_ID	chr1	169828897	169829193	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
5461	ENST00000481268.2	ENST00000290974.7_5	chr4	2317925	2318233	RN7SL589P	-	misc_RNA	chr4	2271323	2420372	ZFYVE28	-	protein_coding	308	same	10290_ID	chr4	2317926	2318233	308	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
5576	ENST00000489557.2_1	ENST00000457245.5_3	chr2	200190032	200194085	AC016746.1	+	lncRNA	chr2	200136872	200335989	SATB2	-	protein_coding	4053	opposite	1559_ID	chr2	200190033	200194085	4053	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	12
5614	ENST00000491909.1_3	ENST00000651134.1_3	chr3	157694349	157695925	AC079943.1	-	lncRNA	chr3	157532610	157806772	AC079943.2	-	lncRNA	1576	same	2687_ID	chr3	157694350	157695925	1576	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
5642	ENST00000493405.2	ENST00000323557.12_2	chr6	52955758	52956056	RN7SL244P	+	misc_RNA	chr6	52930201	52965671	FBXO9	+	protein_coding	298	same	10052_ID	chr6	52955759	52956056	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
5679	ENST00000496760.5_3	ENST00000540557.1_3	chr9	37879396	37904350	SLC25A51	-	processed_transcript	chr9	37588409	38068684	AL138752.2	-	nonsense_mediated_decay	24954	same	12084_ID	chr9	37879397	37904350	24954	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	12
5734	ENST00000500612.1_1	ENST00000561908.1_4	chr16	71496180	71499844	AC010547.1	+	lncRNA	chr16	71481502	71523214	AC010547.4	-	nonsense_mediated_decay	3664	opposite	1107_ID	chr16	71496181	71499844	3664	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	12
5735	ENST00000500632.1_1	ENST00000343028.9_6	chr12	27124518	27132515	AC024896.1	+	lncRNA	chr12	27124511	27167317	TM7SF3	-	protein_coding	14400	opposite	2036_ID	chr12	27124519	27132515	7997	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	12
5773	ENST00000502664.6_8	ENST00000641741.2_2	chr4	144917256	144940533	GYPB	-	protein_coding	chr4	144833483	145114063	AC107223.1	+	lncRNA	23277	opposite	7203_ID	chr4	144917257	144940533	23277	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
5823	ENST00000504583.2_3	ENST00000368843.8_3	chr1	151584513	151585839	AL391335.1	-	lncRNA	chr1	151584504	151671567	SNX27	+	protein_coding	1326	opposite	5574_ID	chr1	151584514	151585839	1326	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	12
5835	ENST00000504955.1_3	ENST00000394730.7_4	chr4	106667401	106748329	GSTCD-AS1	-	lncRNA	chr4	106629940	106768882	GSTCD	+	protein_coding	80928	opposite	7192_ID	chr4	106667402	106748329	80928	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	12
6007	ENST00000510391.1_1	ENST00000264463.8_4	chr5	24554126	24613331	AC091885.2	+	lncRNA	chr5	24487208	24645087	CDH10	-	protein_coding	59205	opposite	3019_ID	chr5	24554127	24613331	59205	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	12
6040	ENST00000511484.1_1	ENST00000509193.5_4	chr5	79424183	79439706	AC010260.1	+	lncRNA	chr5	79407473	79551838	SERINC5	-	protein_coding	15523	opposite	1041_ID	chr5	79424184	79439706	15523	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	12
6130	ENST00000513958.1_1	ENST00000513104.6_4	chr5	135639444	135651788	TRPC7-AS2	+	lncRNA	chr5	135548432	135701233	TRPC7	-	protein_coding	12344	opposite	12794_ID	chr5	135639445	135651788	12344	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	12
6142	ENST00000514269.1_1	ENST00000263985.11_4	chr4	152595634	152599045	AC092611.1	+	lncRNA	chr4	152591655	152682159	GATB	-	protein_coding	3411	opposite	3108_ID	chr4	152595635	152599045	3411	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	12
6150	ENST00000514459.1_1	ENST00000513104.6_4	chr5	135549735	135557847	TRPC7-AS1	+	lncRNA	chr5	135548432	135701233	TRPC7	-	protein_coding	8112	opposite	12793_ID	chr5	135549736	135557847	8112	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	12
6220	ENST00000515942.1	ENST00000651134.1_3	chr3	157648280	157648514	RN7SKP46	-	misc_RNA	chr3	157532610	157806772	AC079943.2	-	lncRNA	234	same	9898_ID	chr3	157648281	157648514	234	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	12
6232	ENST00000515978.1	ENST00000476941.6_4	chr3	142520048	142520110	RNU7-47P	+	snRNA	chr3	142442875	142526730	TRPC1	+	protein_coding	62	same	11785_ID	chr3	142520049	142520110	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	12
6244	ENST00000516030.1	ENST00000677440.1_1	chr10	27521183	27521245	RNU7-12P	-	snRNA	chr10	27457063	27529713	ACBD5	-	protein_coding	62	same	11716_ID	chr10	27521184	27521245	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
6257	ENST00000516065.1	ENST00000340417.8_4	chr4	83924564	83924670	RNU6-615P	+	snRNA	chr4	83845755	83931976	LIN54	-	protein_coding	106	opposite	11382_ID	chr4	83924565	83924670	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
6365	ENST00000516374.1	ENST00000509841.1_4	chr4	122113951	122114058	RNU6-948P	-	snRNA	chr4	122053437	122148621	TNIP3	-	protein_coding	107	same	11629_ID	chr4	122113952	122114058	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
6385	ENST00000516435.1	ENST00000253329.3_4	chr6	149838091	149838153	RNU7-3P	+	snRNA	chr6	149825630	149867179	PPIL4	-	protein_coding	62	opposite	11778_ID	chr6	149838092	149838153	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	12
6430	ENST00000516568.1	ENST00000375772.7_4	chrX	51613801	51613905	RNU6-504P	-	snRNA	chrX	51546102	51645450	MAGED1	+	protein_coding	104	opposite	11289_ID	chrX	51613802	51613905	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
6471	ENST00000516685.1	ENST00000526737.5_3	chr11	77844465	77844568	RNU6-126P	-	snRNA	chr11	77812011	77850695	ALG8	-	nonsense_mediated_decay	103	same	10965_ID	chr11	77844466	77844568	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
6492	ENST00000516749.1	ENST00000341166.3_3	chr8	99204432	99204541	RNU6-914P	-	snRNA	chr8	99202060	99306621	NIPAL2	-	protein_coding	109	same	11608_ID	chr8	99204433	99204541	109	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	12	12
6505	ENST00000516785.1	ENST00000657416.1_1	chr8	47742671	47742778	RNU6-656P	+	snRNA	chr8	47733795	47767393	LINC00293	+	lncRNA	107	same	11412_ID	chr8	47742672	47742778	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
6521	ENST00000516830.1	ENST00000677440.1_1	chr10	27482286	27482429	RNU2-24P	-	snRNA	chr10	27457063	27529713	ACBD5	-	protein_coding	143	same	10623_ID	chr10	27482287	27482429	143	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	12
6613	ENST00000517078.1	ENST00000301030.10_5	chr16	89509725	89509832	RNU6-430P	+	snRNA	chr16	89334037	89556969	ANKRD11	-	protein_coding	107	opposite	11232_ID	chr16	89509726	89509832	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
6644	ENST00000517162.1	ENST00000677148.1_1	chr17	20193569	20193671	RNU6-1057P	+	snRNA	chr17	19912177	20218048	SPECC1	+	protein_coding	102	same	10801_ID	chr17	20193570	20193671	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	12
6713	ENST00000517397.1_1	ENST00000523601.5_3	chr8	99615480	99618568	AP003467.1	+	lncRNA	chr8	99466922	99954799	STK3	-	protein_coding	3088	opposite	6259_ID	chr8	99615481	99618568	3088	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
6756	ENST00000518535.1_1	ENST00000519416.5_3	chr8	38657160	38659814	AC067817.1	+	lncRNA	chr8	38585703	38708311	TACC1	+	protein_coding	2654	same	2375_ID	chr8	38657161	38659814	2654	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
6758	ENST00000518552.2_1	ENST00000519728.6_3	chr8	56806153	56808298	AC018607.1	+	lncRNA	chr8	56792393	56926728	LYN	+	protein_coding	15458	same	1638_ID	chr8	56806154	56808298	2145	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
6893	ENST00000522970.1_3	ENST00000522495.5_1	chr8	39775594	39778409	AC007991.4	-	lncRNA	chr8	39759893	39785945	IDO1	+	protein_coding	2815	opposite	676_ID	chr8	39775595	39778409	2815	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	12
6989	ENST00000526796.2_3	ENST00000298282.14_2	chr11	125128521	125136694	AP001007.1	-	lncRNA	chr11	125034646	125303285	PKNOX2	+	protein_coding	8173	opposite	6063_ID	chr11	125128522	125136694	8173	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
6996	ENST00000526953.1_3	ENST00000527636.7_6	chr11	12843981	12845214	AC013549.3	-	lncRNA	chr11	12695967	12966284	TEAD1	+	protein_coding	1233	opposite	1451_ID	chr11	12843982	12845214	1233	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
7014	ENST00000527398.1_3	ENST00000532063.5_1	chr11	6629896	6631366	AC091564.3	-	lncRNA	chr11	6624937	6632105	ILK	+	protein_coding	1470	opposite	3004_ID	chr11	6629897	6631366	1470	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	4	12
7024	ENST00000527799.1_1	ENST00000382409.4_4	chr11	665909	678391	AC131934.1	+	lncRNA	chr11	644232	695222	DEAF1	-	protein_coding	12482	opposite	4093_ID	chr11	665910	678391	12482	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	12
7031	ENST00000527908.1_3	ENST00000484654.1_1	chr8	144800415	144801061	AC105219.1	-	lncRNA	chr8	144798509	144804628	MAPK15	+	retained_intron	646	opposite	3603_ID	chr8	144800416	144801061	646	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	12
7055	ENST00000528792.1_1	ENST00000527636.7_6	chr11	12870341	12870980	AC013549.4	+	lncRNA	chr11	12695967	12966284	TEAD1	+	protein_coding	639	same	1452_ID	chr11	12870342	12870980	639	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
7076	ENST00000529803.1_2	ENST00000648180.1_3	chr11	76813885	76814377	OMP	+	protein_coding	chr11	76778017	76837201	CAPN5	+	protein_coding	492	same	9336_ID	chr11	76813886	76814377	492	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
7114	ENST00000530918.2_1	ENST00000455332.6_3	chr11	119243415	119252323	AP003396.3	+	lncRNA	chr11	119225924	119252421	USP2	-	protein_coding	8908	opposite	6253_ID	chr11	119243416	119252323	8908	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	12
7146	ENST00000531869.1_3	ENST00000260047.10_3	chr11	82920472	82924421	AP000873.3	-	lncRNA	chr11	82904917	82967141	ANKRD42	+	protein_coding	3949	opposite	6042_ID	chr11	82920473	82924421	3949	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	12
7179	ENST00000533218.1_3	ENST00000241014.6_5	chr11	45927491	45928012	AC068385.1	-	lncRNA	chr11	45907201	45928016	MAPK8IP1	+	protein_coding	521	opposite	2402_ID	chr11	45927492	45928012	521	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	12	12
7254	ENST00000537309.1_2	ENST00000262410.10_3	chr17	44076615	44077060	STH	+	protein_coding	chr17	43971919	44105700	MAPT	+	protein_coding	445	same	12567_ID	chr17	44076616	44077060	445	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	12
7315	ENST00000540868.1_3	ENST00000445055.6_3	chr12	362607	366465	AC007406.2	-	lncRNA	chr12	329786	372039	SLC6A13	-	protein_coding	3858	same	572_ID	chr12	362608	366465	3858	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
7407	ENST00000546361.7_6	ENST00000409035.1_3	chr19	16628704	16653248	CHERP	-	protein_coding	chr19	16589877	16739015	AC008764.1	-	nonsense_mediated_decay	24544	same	6636_ID	chr19	16628705	16653248	24544	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	7	12
7417	ENST00000546714.1_1	ENST00000228437.10_4	chr12	108130365	108153745	AC007622.2	+	lncRNA	chr12	108126647	108154914	PRDM4	-	protein_coding	23414	opposite	620_ID	chr12	108130366	108153745	23380	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	12
7564	ENST00000553105.1_3	ENST00000536681.8_2	chr12	29433350	29470781	AC009318.1	-	lncRNA	chr12	29302210	29488549	FAR2	+	protein_coding	39894	opposite	946_ID	chr12	29433351	29470781	37431	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	12
7698	ENST00000557160.1_3	ENST00000359332.7_2	chr14	50174384	50175510	AL591767.1	-	lncRNA	chr14	50159837	50219868	KLHDC1	+	protein_coding	1126	opposite	5799_ID	chr14	50174385	50175510	1126	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
7721	ENST00000557891.1_3	ENST00000220478.8_2	chr15	52000191	52007417	AC020892.2	-	lncRNA	chr15	51973699	52013223	SCG3	+	protein_coding	7226	opposite	1741_ID	chr15	52000192	52007417	7226	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	12
7729	ENST00000558050.1_1	ENST00000457488.5_5	chr15	64220472	64228152	AC015914.1	+	lncRNA	chr15	64200121	64338521	DAPK2	-	protein_coding	7680	opposite	1506_ID	chr15	64220473	64228152	7680	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	12
7770	ENST00000558822.5_3	ENST00000260264.8_2	chr11	120120467	120136641	AP001150.1	-	lncRNA	chr11	120107348	120190653	POU2F3	+	protein_coding	16174	opposite	6100_ID	chr11	120120468	120136641	16174	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
7856	ENST00000560744.1_1	ENST00000298282.14_2	chr11	125058010	125061300	AP001007.3	+	lncRNA	chr11	125034646	125303285	PKNOX2	+	protein_coding	3290	same	6064_ID	chr11	125058011	125061300	3290	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
7874	ENST00000561324.1_3	ENST00000260327.9_2	chr15	44808847	44809681	AC025430.1	-	lncRNA	chr15	44719826	44821236	CTDSPL2	+	protein_coding	834	opposite	2086_ID	chr15	44808848	44809681	834	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
7903	ENST00000561934.1_3	ENST00000537232.5_3	chr15	56700680	56702384	AC084782.2	-	lncRNA	chr15	56657635	56738195	TEX9	+	protein_coding	1704	opposite	2760_ID	chr15	56700681	56702384	1704	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	12
7917	ENST00000562349.1_1	ENST00000299345.10_3	chr16	61952224	61974601	AC012174.1	+	lncRNA	chr16	61681145	62070739	CDH8	-	protein_coding	22377	opposite	1340_ID	chr16	61952225	61974601	22377	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
7933	ENST00000562568.1_1	ENST00000299345.10_3	chr16	61725659	61727654	AC092125.1	-	lncRNA	chr16	61681145	62070739	CDH8	-	protein_coding	1995	same	3057_ID	chr16	61725660	61727654	1995	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
7961	ENST00000562995.1_1	ENST00000301030.10_5	chr16	89387540	89391518	AC137932.2	+	lncRNA	chr16	89334037	89556969	ANKRD11	-	protein_coding	3978	opposite	4170_ID	chr16	89387541	89391518	3978	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
8028	ENST00000564394.2_2	ENST00000301030.10_5	chr16	89362535	89364724	AC137932.1	+	lncRNA	chr16	89334037	89556969	ANKRD11	-	protein_coding	2190	opposite	4169_ID	chr16	89362536	89364724	2189	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
8037	ENST00000564527.1_1	ENST00000558663.5_6	chr15	99679521	99685575	AC036108.3	+	lncRNA	chr15	99677757	99791428	TTC23	-	protein_coding	6054	opposite	2270_ID	chr15	99679522	99685575	6054	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	11	12
8059	ENST00000565053.1_1	ENST00000268679.9_5	chr16	88949679	88953544	AC092384.2	+	lncRNA	chr16	88941265	89043615	CBFA2T3	-	protein_coding	6099	opposite	3089_ID	chr16	88949680	88953544	3865	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	12
8093	ENST00000565737.1_3	ENST00000345005.8_1	chr15	74905534	74907937	AC100835.1	-	lncRNA	chr15	74900712	74922542	CLK3	+	protein_coding	2403	opposite	3434_ID	chr15	74905535	74907937	2403	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
8099	ENST00000565811.1_1	ENST00000315677.8_7	chr18	4264632	4295405	DLGAP1-AS5	+	lncRNA	chr18	3496029	4455307	DLGAP1	-	protein_coding	30804	opposite	6817_ID	chr18	4264633	4295405	30773	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
8166	ENST00000567146.1	ENST00000544564.5_1	chr16	71952814	71959638	RP11-498D10.5	-	antisense	chr16	71924471	71961793	IST1	+	protein_coding	6824	opposite	11916_ID	chr16	71952815	71959638	6824	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	12
8168	ENST00000567166.1_3	ENST00000301030.10_5	chr16	89486482	89488634	AC092120.1	-	lncRNA	chr16	89334037	89556969	ANKRD11	-	protein_coding	2152	same	3054_ID	chr16	89486483	89488634	2152	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
8179	ENST00000567344.1_1	ENST00000261381.7_4	chr16	17228360	17232593	AC109446.2	+	lncRNA	chr16	17195625	17564817	XYLT1	-	protein_coding	4233	opposite	3756_ID	chr16	17228361	17232593	4233	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	12
8273	ENST00000569574.1_1	ENST00000545827.6_3	chr16	971072	984495	LMF1-AS1	+	lncRNA	chr16	903637	1031318	LMF1	-	nonsense_mediated_decay	13463	opposite	7834_ID	chr16	971073	984495	13423	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	12
8294	ENST00000570269.2_3	ENST00000675478.1_1	chr3	114033347	114048561	AC093010.2	-	lncRNA	chr3	114033346	114866135	ZBTB20	-	protein_coding	15214	same	3180_ID	chr3	114033348	114048561	15214	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	12	12
8300	ENST00000570409.1_1	ENST00000570769.5_1	chr16	3700636	3701704	AC006111.2	-	lncRNA	chr16	3661728	3708096	DNASE1	+	nonsense_mediated_decay	1068	opposite	415_ID	chr16	3700637	3701704	1068	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	12
8311	ENST00000570809.1_1	ENST00000536578.5_3	chr17	666804	668559	AC087392.3	-	lncRNA	chr17	662549	686630	GLOD4	-	protein_coding	1755	same	2811_ID	chr17	666805	668559	1755	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	12
8346	ENST00000572856.1_1	ENST00000315677.8_7	chr18	3603735	3608334	DLGAP1-AS2	+	lncRNA	chr18	3496029	4455307	DLGAP1	-	protein_coding	5337	opposite	6814_ID	chr18	3603736	3608334	4599	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
8347	ENST00000572877.1_1	ENST00000262288.8_2	chr17	55060109	55062465	AC004584.3	+	lncRNA	chr17	55055491	55084129	SCPEP1	+	protein_coding	2356	same	142_ID	chr17	55060110	55062465	2356	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
8354	ENST00000573207.1_1	ENST00000320865.3_3	chr17	80936596	80939610	AC130371.1	+	lncRNA	chr17	80901666	81009686	B3GNTL1	-	protein_coding	3214	opposite	4063_ID	chr17	80936597	80939610	3014	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	12
8376	ENST00000574252.1_3	ENST00000262410.10_3	chr17	43985035	43988145	CR936218.2	-	lncRNA	chr17	43971919	44105700	MAPT	+	protein_coding	3110	opposite	6710_ID	chr17	43985036	43988145	3110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
8384	ENST00000574641.1	ENST00000367470.8_2	chr1	186369703	186370587	OCLM	+	protein_coding	chr1	186344969	186390510	ODR4	+	protein_coding	884	same	9324_ID	chr1	186369704	186370587	884	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
8389	ENST00000574826.1_1	ENST00000648772.1_3	chr17	54966240	54969202	AC015912.1	+	lncRNA	chr17	54913747	54991441	TRIM25	-	nonsense_mediated_decay	2962	opposite	1505_ID	chr17	54966241	54969202	2962	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
8402	ENST00000575741.1_3	ENST00000046640.9_5	chr17	3558914	3561386	AC027796.4	-	lncRNA	chr17	3540053	3566397	CTNS	+	protein_coding	2472	opposite	2234_ID	chr17	3558915	3561386	2472	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	12
8403	ENST00000575922.5_1	ENST00000300714.7_5	chr17	79202506	79207783	AC027601.1	+	lncRNA	chr17	79202076	79212891	TEPSIN	-	protein_coding	5277	opposite	2216_ID	chr17	79202507	79207783	5277	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	12
8410	ENST00000576086.1_3	ENST00000355530.7_2	chr17	4385260	4389648	AC127521.1	-	lncRNA	chr17	4337234	4391499	SPNS3	+	protein_coding	4388	opposite	4039_ID	chr17	4385261	4389648	4388	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	12
8423	ENST00000576602.1	ENST00000284061.8_3	chr17	54946307	54946925	RP11-670E13.2	+	lincRNA	chr17	54911511	54946928	DGKE	+	protein_coding	618	same	11928_ID	chr17	54946308	54946925	618	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	12	12
8447	ENST00000577235.1	ENST00000356079.9_2	chr2	204124326	204124618	RN7SL670P	+	misc_RNA	chr2	204103740	204170749	CYP20A1	+	protein_coding	292	same	10355_ID	chr2	204124327	204124618	292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
8618	ENST00000578146.1	ENST00000341773.10_2	chr19	35836415	35836530	MIR5196	+	miRNA	chr19	35820071	35838258	CD22	+	protein_coding	115	same	8858_ID	chr19	35836416	35836530	115	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	12
8627	ENST00000578197.1	ENST00000601612.5_1	chr19	50357847	50357908	MIR4749	+	miRNA	chr19	50353991	50363997	PTOV1	+	nonsense_mediated_decay	61	same	8737_ID	chr19	50357848	50357908	61	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
8767	ENST00000579049.1_1	ENST00000648078.1_1	chr18	22015327	22019602	AC007922.2	+	lncRNA	chr18	22006597	22033474	IMPACT	+	protein_coding	4275	same	668_ID	chr18	22015328	22019602	4275	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	12
8871	ENST00000579668.1	ENST00000635860.1_5	chr17	54132147	54132247	AC011073.1	+	miRNA	chr17	53959661	54526547	ANKFN1	+	protein_coding	100	same	1174_ID	chr17	54132148	54132247	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
8910	ENST00000579884.1	ENST00000612372.4_3	chr7	72138046	72138146	AC091738.2	+	miRNA	chr7	72023728	72298753	TYW1B	-	protein_coding	100	opposite	3011_ID	chr7	72138047	72138146	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
8937	ENST00000580006.1	ENST00000617735.4_3	chr2	209234285	209234347	AC012362.1	-	miRNA	chr2	209224437	209358754	PTH2R	+	protein_coding	62	opposite	1367_ID	chr2	209234286	209234347	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
8950	ENST00000580117.1	ENST00000337414.9_4	chrX	11336733	11336806	MIR548AX	-	miRNA	chrX	11155663	11684040	ARHGAP6	-	protein_coding	73	same	8889_ID	chrX	11336734	11336806	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
8990	ENST00000580348.1	ENST00000226299.8_1	chr4	17596690	17596959	RN7SL315P	-	misc_RNA	chr4	17578814	17609591	LAP3	+	protein_coding	269	opposite	10099_ID	chr4	17596691	17596959	269	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
9062	ENST00000580712.1	ENST00000302874.9_2	chr4	25355591	25355693	AC108218.1	+	miRNA	chr4	25314395	25372005	ZCCHC4	+	protein_coding	102	same	3730_ID	chr4	25355592	25355693	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
9109	ENST00000580936.1	ENST00000375715.5_4	chr9	94398532	94398643	MIR3910-1	+	miRNA	chr9	94325372	94711162	ROR2	-	protein_coding	111	opposite	8415_ID	chr9	94398533	94398643	111	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	12
9135	ENST00000581077.1	ENST00000220003.13_1	chr15	75081012	75081098	MIR4513	-	miRNA	chr15	75074397	75095539	CSK	+	protein_coding	86	opposite	8591_ID	chr15	75081013	75081098	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
9164	ENST00000581261.1	ENST00000648772.1_3	chr17	54968630	54968716	MIR3614	-	miRNA	chr17	54913747	54991441	TRIM25	-	nonsense_mediated_decay	86	same	8349_ID	chr17	54968631	54968716	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
9176	ENST00000581353.1	ENST00000448276.7_4	chr17	61917342	61917644	RN7SL805P	+	misc_RNA	chr17	61909440	61920045	SMARCD2	-	protein_coding	302	opposite	10445_ID	chr17	61917343	61917644	302	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
9223	ENST00000581684.1	ENST00000358677.9_3	chr2	201251897	201251987	AC105381.1	+	miRNA	chr2	201170708	201346986	SPATS2L	+	protein_coding	90	same	3614_ID	chr2	201251898	201251987	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
9236	ENST00000581753.1	ENST00000254323.6_3	chr19	13925879	13926133	RN7SL619P	-	misc_RNA	chr19	13906273	13943044	ZSWIM4	+	protein_coding	254	opposite	10312_ID	chr19	13925880	13926133	254	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	12
9250	ENST00000581820.1	ENST00000260327.9_2	chr15	44726451	44726705	RN7SL347P	+	misc_RNA	chr15	44719826	44821236	CTDSPL2	+	protein_coding	254	same	10119_ID	chr15	44726452	44726705	254	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
9277	ENST00000581927.1	ENST00000612372.4_3	chr7	72162873	72162949	MIR4650-2	+	miRNA	chr7	72023728	72298753	TYW1B	-	protein_coding	76	opposite	8637_ID	chr7	72162874	72162949	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	12
9300	ENST00000582065.1	ENST00000261884.8_2	chr15	64692408	64692671	RN7SL595P	-	misc_RNA	chr15	64680034	64747502	TRIP4	+	protein_coding	263	opposite	10293_ID	chr15	64692409	64692671	263	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
9313	ENST00000582134.1	ENST00000552941.5_7	chr14	65511405	65511487	MIR4706	+	miRNA	chr14	65381202	65528521	CHURC1-FNTB	+	nonsense_mediated_decay	82	same	8694_ID	chr14	65511406	65511487	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
9327	ENST00000582206.1	ENST00000261884.8_2	chr15	64713400	64713698	RN7SL707P	-	misc_RNA	chr15	64680034	64747502	TRIP4	+	protein_coding	298	opposite	10377_ID	chr15	64713401	64713698	298	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	12
9444	ENST00000582827.1	ENST00000664306.2_2	chrX	7065900	7065978	MIR4767	+	miRNA	chrX	7065277	7772399	STS	+	nonsense_mediated_decay	78	same	8755_ID	chrX	7065901	7065978	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
9469	ENST00000582975.1	ENST00000392825.8_2	chr2	155002617	155002720	AC008166.1	-	miRNA	chr2	154728434	155310491	GALNT13	+	protein_coding	103	opposite	711_ID	chr2	155002618	155002720	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
9535	ENST00000583314.1_1	ENST00000584307.5_3	chr18	735745	737459	AP001020.3	+	lncRNA	chr18	721587	812547	YES1	-	protein_coding	1714	opposite	6067_ID	chr18	735746	737459	1714	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	12
9583	ENST00000583618.1	ENST00000300737.8_2	chr11	3877291	3877371	MIR4687	+	miRNA	chr11	3876931	4114439	STIM1	+	protein_coding	80	same	8673_ID	chr11	3877292	3877371	80	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	12
9598	ENST00000583702.1_3	ENST00000358821.8_4	chr18	72228615	72229335	AC009704.1	-	lncRNA	chr18	72201734	72254448	CNDP1	+	protein_coding	720	opposite	988_ID	chr18	72228616	72229335	720	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	12
9659	ENST00000584060.1_3	ENST00000315677.8_7	chr18	3770016	3771430	AP002478.2	-	lncRNA	chr18	3496029	4455307	DLGAP1	-	protein_coding	1414	same	6189_ID	chr18	3770017	3771430	1414	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	12
9675	ENST00000584126.1	ENST00000295987.13_5	chrX	47446827	47446904	MIR4769	+	miRNA	chrX	47431299	47479256	SYN1	-	protein_coding	77	opposite	8758_ID	chrX	47446828	47446904	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	12
9726	ENST00000584402.1	ENST00000475268.5_1	chr10	12172758	12172815	MIR548AK	-	miRNA	chr10	12171692	12211960	SEC61A2	+	nonsense_mediated_decay	57	opposite	8875_ID	chr10	12172759	12172815	57	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
9728	ENST00000584410.1	ENST00000450849.7_3	chr19	3920246	3920504	RN7SL202P	-	misc_RNA	chr19	3880682	3928080	ATCAY	+	protein_coding	258	opposite	10018_ID	chr19	3920247	3920504	258	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	12
9751	ENST00000584540.1_1	ENST00000649191.2_5	chr17	15554903	15557803	AC005324.4	+	lncRNA	chr17	15531279	15587625	TRIM16	-	protein_coding	2900	opposite	275_ID	chr17	15554904	15557803	2900	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	7	12
9785	ENST00000584745.1	ENST00000344773.6_1	chr2	28219233	28219316	MIR4263	+	miRNA	chr2	28113595	28561768	BABAM2	+	protein_coding	83	same	8464_ID	chr2	28219234	28219316	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
9812	ENST00000584905.1	ENST00000470044.5_3	chr16	1925657	1925735	AL499628.1	-	miRNA	chr16	1883987	1934295	MEIOB	-	protein_coding	78	same	5675_ID	chr16	1925658	1925735	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
9834	ENST00000585039.1	ENST00000612372.4_3	chr7	72293476	72293750	RN7SL377P	-	misc_RNA	chr7	72023728	72298753	TYW1B	-	protein_coding	274	same	10141_ID	chr7	72293477	72293750	274	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
9855	ENST00000585139.1	ENST00000645284.1_3	chr1	6489893	6489956	MIR4252	-	miRNA	chr1	6484835	6521004	ESPN	+	protein_coding	63	opposite	8454_ID	chr1	6489894	6489956	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
9964	ENST00000587315.1_3	ENST00000613122.5_2	chr18	77462720	77463651	AC068473.2	-	lncRNA	chr18	77439802	77514503	CTDP1	+	protein_coding	931	opposite	2413_ID	chr18	77462721	77463651	931	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
10034	ENST00000589794.1_1	ENST00000361673.4_4	chr18	56224301	56233909	AC104971.2	+	lncRNA	chr18	56148478	56296323	ALPK2	-	protein_coding	9608	opposite	3576_ID	chr18	56224302	56233909	9608	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
10039	ENST00000590024.1_1	ENST00000659121.1_1	chr2	179588183	179591773	AC010680.1	+	lncRNA	chr2	179387947	179644679	TTN-AS1	+	lncRNA	3590	same	1122_ID	chr2	179588184	179591773	3590	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
10082	ENST00000591242.1_1	ENST00000254323.6_3	chr19	13907387	13907747	AC020916.2	-	lncRNA	chr19	13906273	13943044	ZSWIM4	+	protein_coding	360	opposite	1759_ID	chr19	13907388	13907747	360	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
10097	ENST00000591771.1	ENST00000588756.5_4	chr19	55463001	55463961	CTC-550B14.8	+	antisense	chr19	55434882	55477611	NLRP7	-	protein_coding	960	opposite	6733_ID	chr19	55463002	55463961	960	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
10146	ENST00000593524.1_1	ENST00000262966.12_2	chr19	4356633	4358445	AC007292.2	-	lncRNA	chr19	4343523	4360083	MPND	+	protein_coding	1812	opposite	538_ID	chr19	4356634	4358445	1812	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	12
10156	ENST00000593830.1_1	ENST00000591812.2_7	chr19	39360798	39364403	AC011455.1	+	lncRNA	chr19	39358469	39368915	RINL	-	protein_coding	3605	opposite	1217_ID	chr19	39360799	39364403	3605	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	12
10184	ENST00000594776.1_3	ENST00000262966.12_2	chr19	4347240	4354054	AC007292.3	-	lncRNA	chr19	4343523	4360083	MPND	+	protein_coding	6814	opposite	539_ID	chr19	4347241	4354054	6814	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	12
10206	ENST00000595753.6_4	ENST00000409035.1_3	chr19	16660647	16683226	SLC35E1	-	protein_coding	chr19	16589877	16739015	AC008764.1	-	nonsense_mediated_decay	22585	same	12090_ID	chr19	16660648	16683226	22579	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	12
10235	ENST00000596488.1_1	ENST00000311227.6_4	chr19	49859408	49861026	AC010524.1	+	lncRNA	chr19	49843851	49865714	TEAD2	-	protein_coding	1618	opposite	1089_ID	chr19	49859409	49861026	1618	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	12
10287	ENST00000597817.1	ENST00000647188.2_5	chr21	38888739	38888973	AP001421.1	+	protein_coding	chr21	38739074	38898660	DYRK1A	+	protein_coding	234	same	6128_ID	chr21	38888740	38888973	234	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	12	12
10318	ENST00000598663.1	ENST00000367470.8_2	chr1	186364122	186365908	AL596220.1	-	protein_coding	chr1	186344969	186390510	ODR4	+	protein_coding	1786	opposite	5825_ID	chr1	186364123	186365908	1786	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
10354	ENST00000599809.1	ENST00000475045.6_4	chr21	37270352	37270727	FKSG68	-	protein_coding	chr21	36259342	37376965	RUNX1	-	protein_coding	375	same	7033_ID	chr21	37270353	37270727	375	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	12
10382	ENST00000600745.1	ENST00000673675.1_2	chr19	15560358	15560419	MIR1470	+	miRNA	chr19	15530788	15560767	WIZ	-	protein_coding	61	opposite	8099_ID	chr19	15560359	15560419	61	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
10434	ENST00000602304.1_1	ENST00000646677.1_1	chr16	50746754	50747500	AC007728.3	+	lncRNA	chr16	50727498	50767952	NOD2	+	nonsense_mediated_decay	746	same	641_ID	chr16	50746755	50747500	746	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
10496	ENST00000602768.1_1	ENST00000397256.5_4	chr3	9854445	9854781	AC022382.1	-	lncRNA	chr3	9834797	9877085	ARPC4-TTLL3	+	protein_coding	336	opposite	1852_ID	chr3	9854446	9854781	336	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	12
10512	ENST00000602844.1_3	ENST00000630626.2_4	chr16	67772490	67773825	AC010530.1	-	lncRNA	chr16	67757004	67840555	RANBP10	-	protein_coding	1335	same	1092_ID	chr16	67772491	67773825	1335	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
10616	ENST00000605021.1_1	ENST00000659121.1_1	chr2	179509443	179509906	AC010680.5	+	lncRNA	chr2	179387947	179644679	TTN-AS1	+	lncRNA	463	same	1130_ID	chr2	179509444	179509906	463	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
10617	ENST00000605044.1_1	ENST00000313949.11_1	chr20	57451646	57452036	AL121917.2	-	lncRNA	chr20	57414772	57486247	GNAS	+	protein_coding	390	opposite	4773_ID	chr20	57451647	57452036	390	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
10652	ENST00000605911.1_1	ENST00000520509.5_3	chr8	95896836	95897298	AC087752.4	+	lncRNA	chr8	95891997	95908906	CCNE2	-	protein_coding	462	opposite	2850_ID	chr8	95896837	95897298	462	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	12
10764	ENST00000606934.1_1	ENST00000552941.5_7	chr14	65470042	65470485	AL139022.2	-	lncRNA	chr14	65381202	65528521	CHURC1-FNTB	+	nonsense_mediated_decay	443	opposite	4999_ID	chr14	65470043	65470485	443	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
10769	ENST00000607052.1_1	ENST00000639284.1_3	chr3	3194625	3195119	AC024060.2	+	lncRNA	chr3	3186311	3221411	CRBN	-	protein_coding	494	opposite	1992_ID	chr3	3194626	3195119	494	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	12
10850	ENST00000607738.1_1	ENST00000375238.8_5	chr20	32251171	32253425	C20orf144	+	retained_intron	chr20	32244892	32262269	NECAB3	-	protein_coding	3293	opposite	6503_ID	chr20	32251172	32253425	2254	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	12
10901	ENST00000608236.1_2	ENST00000648869.1_4	chr1	153950218	153951636	AL358472.2	+	lncRNA	chr1	153948325	153958722	AL358472.6	-	nonsense_mediated_decay	1418	opposite	5456_ID	chr1	153950219	153951636	1418	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	12
10949	ENST00000608816.1_1	ENST00000263202.15_4	chr22	19444025	19444485	AC000068.2	+	lncRNA	chr22	19437433	19466716	UFD1	-	protein_coding	460	opposite	20_ID	chr22	19444026	19444485	460	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	12
10954	ENST00000608909.1_1	ENST00000418265.1_3	chr3	128842281	128842846	AC108673.2	+	lncRNA	chr3	128806417	128879879	ISY1-RAB43	-	protein_coding	565	opposite	3743_ID	chr3	128842282	128842846	565	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	12
11026	ENST00000609701.1_1	ENST00000262126.9_3	chr18	9259385	9260388	AP001033.2	+	lncRNA	chr18	9136778	9285983	ANKRD12	+	protein_coding	1003	same	6071_ID	chr18	9259386	9260388	1003	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	12
11091	ENST00000610269.1_2	ENST00000673665.1_1	chr7	107220001	107220502	AC004839.2	-	lncRNA	chr7	107204415	107263762	DUS4L-BCAP29	+	protein_coding	501	opposite	183_ID	chr7	107220002	107220502	501	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	12
11097	ENST00000610389.1_1	ENST00000361673.4_4	chr18	56178829	56179542	AC105105.3	-	lncRNA	chr18	56148478	56296323	ALPK2	-	protein_coding	713	same	3595_ID	chr18	56178830	56179542	713	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
11140	ENST00000611427.1_1	ENST00000225371.6_2	chr17	56279712	56280364	AC005962.1	-	lncRNA	chr17	56270086	56282535	EPX	+	protein_coding	652	opposite	390_ID	chr17	56279713	56280364	652	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
11157	ENST00000611898.4_3	ENST00000450451.1_1	chr1	238041163	238054222	ZP4	-	protein_coding	chr1	238025474	238091621	AL359924.1	+	lncRNA	13059	opposite	13084_ID	chr1	238041164	238054222	13059	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	12
11192	ENST00000612833.1_1	ENST00000671377.2_4	chr16	87503975	87507976	AC105429.1	-	lncRNA	chr16	87439853	87526630	ZCCHC14	-	protein_coding	4001	same	3620_ID	chr16	87503976	87507976	4001	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
11259	ENST00000614396.1_1	ENST00000335574.10_3	chr20	30123065	30123429	AL110115.1	+	lncRNA	chr20	30102212	30157370	HM13	+	protein_coding	364	same	4719_ID	chr20	30123066	30123429	364	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
11262	ENST00000614448.1_1	ENST00000428463.5_3	chrX	47915698	47925971	ZNF630-AS1	+	lncRNA	chrX	47842755	47930508	ZNF630	-	nonsense_mediated_decay	10273	opposite	13060_ID	chrX	47915699	47925971	10273	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	12
11295	ENST00000615211.1_1	ENST00000329841.10_2	chr15	101428676	101429311	AC015712.7	-	lncRNA	chr15	101420035	101456831	ALDH1A3	+	protein_coding	635	opposite	1472_ID	chr15	101428677	101429311	635	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
11320	ENST00000615889.4_2	ENST00000649556.1_3	chr16	4838397	4846492	SMIM22	+	protein_coding	chr16	4827939	4851424	AC020663.4	-	lncRNA	8095	opposite	12132_ID	chr16	4838398	4846492	8095	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	12
11336	ENST00000616177.4_3	ENST00000619574.4_3	chr20	21134663	21198903	KIZ-AS1	-	lncRNA	chr20	21106623	21227256	KIZ	+	protein_coding	64264	opposite	7450_ID	chr20	21134664	21198903	64240	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	12
11396	ENST00000617619.1_1	ENST00000310924.7_6	chr17	77926461	77926791	AC100791.3	+	lncRNA	chr17	77906141	78009671	TBC1D16	-	protein_coding	330	opposite	3415_ID	chr17	77926462	77926791	330	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	12
11397	ENST00000617667.1_1	ENST00000340811.9_4	chr12	32973075	32973501	AC087588.1	-	lncRNA	chr12	32943688	33049711	PKP2	-	protein_coding	426	same	2835_ID	chr12	32973076	32973501	426	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	12
11443	ENST00000619092.1_1	ENST00000434316.7_2	chr13	114181574	114184936	AL442125.1	+	lncRNA	chr13	114145335	114204544	TMCO3	+	protein_coding	3362	same	5610_ID	chr13	114181575	114184936	3362	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
11456	ENST00000619338.1_1	ENST00000434316.7_2	chr13	114166061	114168788	AL442125.2	+	lncRNA	chr13	114145335	114204544	TMCO3	+	protein_coding	2727	same	5611_ID	chr13	114166062	114168788	2727	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
11536	ENST00000620909.1_2	ENST00000454636.1	chr22	20337735	20341114	AC023490.2	-	lncRNA	chr22	20326327	20350457	XXbac-B33L19.3	+	antisense	4249	opposite	1953_ID	chr22	20337736	20341114	3379	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	12
11573	ENST00000621650.2_2	ENST00000637233.1_1	chr19	58790320	58814157	ZNF8	+	protein_coding	chr19	58740279	58826549	AC020915.4	+	nonsense_mediated_decay	23837	same	13075_ID	chr19	58790321	58814157	23837	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	12
11575	ENST00000621680.1_1	ENST00000396879.8_7	chr15	43934586	43935221	AC011330.2	-	lncRNA	chr15	43920700	43941042	CATSPER2	-	protein_coding	635	same	1189_ID	chr15	43934587	43935221	635	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
11584	ENST00000621847.1_1	ENST00000308330.3_2	chr12	65565041	65565697	AC026124.2	+	lncRNA	chr12	65563362	65642135	LEMD3	+	protein_coding	656	same	2117_ID	chr12	65565042	65565697	656	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
11587	ENST00000621880.1_1	ENST00000558231.5_3	chr15	58282414	58282834	AC012653.2	-	lncRNA	chr15	58247260	58571462	ALDH1A2	-	protein_coding	420	same	1422_ID	chr15	58282415	58282834	420	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
11676	ENST00000624081.1_4	ENST00000270172.7_4	chr21	45666234	45671581	FP565260.4	-	protein_coding	chr21	45666221	45682099	DNMT3L	-	protein_coding	5347	same	7073_ID	chr21	45666235	45671581	5347	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	12
11680	ENST00000624111.2_1	ENST00000262410.10_3	chr17	43973148	43976164	MAPT-IT1	+	lncRNA	chr17	43971919	44105700	MAPT	+	protein_coding	3016	same	7919_ID	chr17	43973149	43976164	3016	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
11694	ENST00000624433.1_1	ENST00000494857.6_8	chr8	17368121	17368809	AP006248.3	+	lncRNA	chr8	17354596	17428075	SLC7A2	+	protein_coding	688	same	6308_ID	chr8	17368122	17368809	688	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
11709	ENST00000624882.1_1	ENST00000404760.5_4	chr22	50199099	50200856	Z98885.3	+	lncRNA	chr22	50166930	50221160	BRD1	-	protein_coding	1757	opposite	12980_ID	chr22	50199100	50200856	1757	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
11713	ENST00000624923.1_1	ENST00000345044.10_1	chr22	24207434	24215464	AP000350.8	-	lncRNA	chr22	24198889	24228496	SLC2A11	+	protein_coding	8030	opposite	5980_ID	chr22	24207435	24215464	8030	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	12
11744	ENST00000626439.1_1	ENST00000674280.1_3	chr3	63897193	63897448	SCAANT1	-	lncRNA	chr3	63849542	63989138	ATXN7	+	protein_coding	255	opposite	11989_ID	chr3	63897194	63897448	255	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
11767	ENST00000628886.1_2	ENST00000675478.1_1	chr3	114164367	114237988	ZBTB20-AS5	+	lncRNA	chr3	114033346	114866135	ZBTB20	-	protein_coding	83932	opposite	13000_ID	chr3	114164368	114237988	73621	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	7	12
11802	ENST00000631190.1_1	ENST00000527661.5_2	chr11	33097694	33101000	LINC00294	+	lncRNA	chr11	33061117	33127488	TCP11L1	+	nonsense_mediated_decay	3306	same	7537_ID	chr11	33097695	33101000	3306	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
11835	ENST00000635110.1_1	ENST00000648100.1_2	chr12	4416928	4463715	TIGAR	+	protein_coding	chr12	4382927	4514656	AC008012.1	+	nonsense_mediated_decay	52266	same	12695_ID	chr12	4416929	4463715	46787	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	12
11976	ENST00000642132.1_1	ENST00000641749.1_3	chr1	50718240	50724666	AL592182.2	+	lncRNA	chr1	50695333	50786833	LINC02808	-	lncRNA	6426	opposite	5806_ID	chr1	50718241	50724666	6426	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	12
11983	ENST00000642778.1_3	ENST00000609590.1_1	chr6	167528444	167535015	AL121935.1	-	lncRNA	chr6	167412892	167552629	Z94721.2	+	retained_intron	6571	opposite	4782_ID	chr6	167528445	167535015	6571	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
11984	ENST00000642782.1_3	ENST00000552941.5_7	chr14	65412545	65439944	RAB15	-	retained_intron	chr14	65381202	65528521	CHURC1-FNTB	+	nonsense_mediated_decay	27413	opposite	9689_ID	chr14	65412546	65439944	27399	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
12014	ENST00000647254.1_3	ENST00000609590.1_1	chr6	167539710	167545060	AL121935.2	-	lncRNA	chr6	167412892	167552629	Z94721.2	+	retained_intron	5350	opposite	4783_ID	chr6	167539711	167545060	5350	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
12049	ENST00000648206.1_1	ENST00000536047.5_3	chr3	45883756	45908063	AC099782.1	+	lncRNA	chr3	45864811	45957216	LZTFL1	-	protein_coding	24307	opposite	3391_ID	chr3	45883757	45908063	24307	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	12
12153	ENST00000649944.1_1	ENST00000258198.7_4	chr16	66772140	66773625	AC018557.2	+	lncRNA	chr16	66754795	66785512	DYNC1LI2	-	protein_coding	1485	opposite	1634_ID	chr16	66772141	66773625	1485	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
12188	ENST00000650629.1_3	ENST00000443119.7_3	chr16	70382987	70406069	AC012184.4	-	lncRNA	chr16	70333126	70406485	AC012184.2	+	protein_coding	23082	opposite	1345_ID	chr16	70382988	70406069	23082	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	12
12205	ENST00000651029.1_1	ENST00000456265.1_3	chr20	12916909	12921550	AL133331.1	+	lncRNA	chr20	12845849	12933167	LINC01722	-	lncRNA	4641	opposite	4844_ID	chr20	12916910	12921550	4641	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	12
12218	ENST00000651189.1_3	ENST00000267260.5_2	chr12	119425814	119427399	AC087885.1	-	lncRNA	chr12	119419345	119600856	SRRM4	+	protein_coding	1585	opposite	2856_ID	chr12	119425815	119427399	1585	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
12251	ENST00000652064.1_1	ENST00000296420.9_5	chr4	101342811	101395618	AC097459.1	+	lncRNA	chr4	101316497	101439179	EMCN	-	protein_coding	52807	opposite	3314_ID	chr4	101342812	101395618	52807	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	12
12263	ENST00000652283.1_1	ENST00000641741.2_2	chr4	144931389	144933751	AC093890.2	+	lncRNA	chr4	144833483	145114063	AC107223.1	+	lncRNA	2362	same	3258_ID	chr4	144931390	144933751	2362	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
12311	ENST00000653118.1_3	ENST00000448413.5_3	chr3	4310836	4353179	AC023483.1	-	lncRNA	chr3	3823035	4508945	SUMF1	-	nonsense_mediated_decay	42343	same	1952_ID	chr3	4310837	4353179	42343	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
12320	ENST00000653429.1_3	ENST00000413764.6_3	chr1	210560000	210567456	AL034351.3	-	lncRNA	chr1	210501595	210849638	HHAT	+	protein_coding	7456	opposite	4582_ID	chr1	210560001	210567456	7456	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	12
12344	ENST00000654179.1_3	ENST00000582328.5_2	chr17	56296735	56310840	AC005962.2	+	lncRNA	chr17	56295908	56345587	LPO	+	protein_coding	14105	same	391_ID	chr17	56296736	56310840	14105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
12372	ENST00000655005.1_3	ENST00000308191.11_4	chr6	136175190	136202080	AL360178.1	-	lncRNA	chr6	136172838	136516712	PDE7B	+	protein_coding	60795	opposite	5523_ID	chr6	136175191	136202080	26890	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
12383	ENST00000655147.2_3	ENST00000554335.6_4	chr14	55151470	55154636	AL133444.1	-	lncRNA	chr14	55033845	55260030	SAMD4A	+	protein_coding	3179	opposite	4857_ID	chr14	55151471	55154636	3166	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
12423	ENST00000655960.1_3	ENST00000664495.1_1	chr1	61378462	61522557	NFIA-AS2	-	lncRNA	chr1	61331003	61923683	NFIA	+	nonsense_mediated_decay	144211	opposite	9258_ID	chr1	61378463	61522557	144095	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	12
12482	ENST00000657156.1_1	ENST00000301030.10_5	chr16	89497395	89520086	AC092120.3	+	lncRNA	chr16	89334037	89556969	ANKRD11	-	protein_coding	22691	opposite	3055_ID	chr16	89497396	89520086	22691	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
12493	ENST00000657342.1_1	ENST00000503687.2_3	chr7	66119564	66135400	AC006001.2	+	lncRNA	chr7	66093944	66276176	AC027644.4	+	nonsense_mediated_decay	16986	same	393_ID	chr7	66119565	66135400	15836	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
12549	ENST00000658407.1_1	ENST00000323084.9_7	chr21	45950054	45953028	AP001066.1	+	lncRNA	chr21	45917775	46131487	TSPEAR	-	protein_coding	2974	opposite	6090_ID	chr21	45950055	45953028	2974	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	12
12561	ENST00000658561.1_3	ENST00000373491.3_2	chr6	37268985	37272952	AL096712.2	-	lncRNA	chr6	37225547	37300746	TBC1D22B	+	protein_coding	3967	opposite	4688_ID	chr6	37268986	37272952	3967	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
12573	ENST00000658743.1_1	ENST00000274897.9_2	chr6	54055003	54055507	AL359380.1	+	lncRNA	chr6	53883713	54131078	MLIP	+	protein_coding	504	same	5483_ID	chr6	54055004	54055507	504	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	12
12586	ENST00000658948.1_1	ENST00000341772.5_4	chr2	230272073	230273044	AC008273.1	+	lncRNA	chr2	230222344	230579271	DNER	-	protein_coding	971	opposite	718_ID	chr2	230272074	230273044	971	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	12
12597	ENST00000659141.1_3	ENST00000602312.2_1	chr16	22181629	22186845	AC009019.2	-	lncRNA	chr16	22176903	22203075	SDR42E2	+	protein_coding	5216	opposite	844_ID	chr16	22181630	22186845	5216	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	12
12612	ENST00000659395.1_1	ENST00000675478.1_1	chr3	114070617	114107818	ZBTB20-AS1	+	lncRNA	chr3	114033346	114866135	ZBTB20	-	protein_coding	37208	opposite	12996_ID	chr3	114070618	114107818	37201	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	9	12
12637	ENST00000660046.1_1	ENST00000557943.6_4	chr15	76555537	76567728	AC027243.3	+	lncRNA	chr15	76507693	76603810	ETFA	-	protein_coding	12191	opposite	2199_ID	chr15	76555538	76567728	12191	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	12
12687	ENST00000661097.1_1	ENST00000448413.5_3	chr3	3960392	4088392	AC023480.1	+	lncRNA	chr3	3823035	4508945	SUMF1	-	nonsense_mediated_decay	128014	opposite	1950_ID	chr3	3960393	4088392	128000	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	12
12694	ENST00000661207.1_1	ENST00000660355.1_3	chr6	147176118	147184217	AL138916.1	+	lncRNA	chr6	147163049	147525691	STXBP5-AS1	-	lncRNA	8478	opposite	4982_ID	chr6	147176119	147184217	8099	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	12
12706	ENST00000661521.1_3	ENST00000344773.6_1	chr2	28529929	28533427	AC093690.1	-	lncRNA	chr2	28113595	28561768	BABAM2	+	protein_coding	3498	opposite	3237_ID	chr2	28529930	28533427	3498	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	12
12708	ENST00000661670.1_1	ENST00000648300.1_3	chr3	127556278	127564342	AC117480.1	+	lncRNA	chr3	127410974	127771033	MGLL	-	protein_coding	8064	opposite	3933_ID	chr3	127556279	127564342	8064	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
12973	ENST00000667297.1_2	ENST00000673785.1_3	chr7	116972814	116990150	AC002465.1	-	lncRNA	chr7	116927173	117188729	CFTR	+	protein_coding	17336	opposite	55_ID	chr7	116972815	116990150	17336	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
13019	ENST00000668204.1_1	ENST00000315677.8_7	chr18	3653029	3656269	AP002478.1	+	lncRNA	chr18	3496029	4455307	DLGAP1	-	protein_coding	3253	opposite	6188_ID	chr18	3653030	3656269	3240	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
13023	ENST00000668291.1_3	ENST00000308191.11_4	chr6	136203917	136209271	AL360178.2	-	lncRNA	chr6	136172838	136516712	PDE7B	+	protein_coding	5354	opposite	5524_ID	chr6	136203918	136209271	5354	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
13025	ENST00000668389.1_1	ENST00000262178.7_5	chr7	158900451	158901907	AC007269.1	+	lncRNA	chr7	158820865	158937559	VIPR2	-	protein_coding	1456	opposite	532_ID	chr7	158900452	158901907	1456	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
13030	ENST00000668717.1_4	ENST00000359926.7_3	chr20	58199958	58203350	PHACTR3-AS1	-	lncRNA	chr20	58152563	58422766	PHACTR3	+	protein_coding	3392	opposite	9547_ID	chr20	58199959	58203350	3392	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
13089	ENST00000669717.1_3	ENST00000511616.5_3	chr5	9789406	9812776	AC091838.1	-	lncRNA	chr5	9641426	9903938	LINC02112	-	lncRNA	23370	same	3016_ID	chr5	9789407	9812776	23370	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	12
13101	ENST00000670026.1_3	ENST00000413764.6_3	chr1	210536204	210540292	AL034351.4	-	lncRNA	chr1	210501595	210849638	HHAT	+	protein_coding	4088	opposite	4583_ID	chr1	210536205	210540292	4088	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	12
13177	ENST00000671634.1_3	ENST00000372470.9_3	chr1	43813958	43814515	AL139289.2	-	lncRNA	chr1	43803488	43820137	MPL	+	protein_coding	557	opposite	5031_ID	chr1	43813959	43814515	557	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	12
13220	ENST00000678095.1_1	ENST00000540557.1_3	chr9	37759230	37832114	EXOSC3	-	nonsense_mediated_decay	chr9	37588409	38068684	AL138752.2	-	nonsense_mediated_decay	72884	same	6946_ID	chr9	37759231	37832114	72884	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	12
128310	ENST00000364915.1	ENST00000376185.5_3	chr6	31504150	31504226	SNORD117	-	snoRNA	chr6	31497995	31514359	ATP6V1G2-DDX39B	-	nonsense_mediated_decay	76	same	12356_ID	chr6	31504151	31504226	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
13241	ENST00000365155.1	ENST00000445192.7_5	chr1	186280956	186281060	RNU6-1240P	-	snRNA	chr1	186265410	186283699	PRG4	+	protein_coding	104	opposite	10940_ID	chr1	186280957	186281060	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	12
19391	ENST00000384648.1	ENST00000523601.5_3	chr8	99475171	99475278	RNU6-748P	-	snRNA	chr8	99466922	99954799	STK3	-	protein_coding	107	same	11471_ID	chr8	99475172	99475278	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	12
29881	ENST00000409439.6_1	ENST00000409527.6_3	chr16	618836	625903	Z98883.1	+	lncRNA	chr16	617008	633035	PIGQ	+	protein_coding	7421	same	12977_ID	chr16	618837	625903	7067	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	12
32081	ENST00000411054.1	ENST00000439617.8_7	chr1	231806380	231806496	RNU5A-5P	+	snRNA	chr1	231762535	232177018	DISC1	+	protein_coding	116	same	10737_ID	chr1	231806381	231806496	116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
34681	ENST00000415917.2_3	ENST00000580790.1_3	chr10	75463492	75473267	AC022400.4	-	lncRNA	chr10	75458908	75490245	BMS1P4	-	lncRNA	9847	same	1857_ID	chr10	75463493	75473267	9775	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	12
36331	ENST00000420520.1_1	ENST00000376185.5_3	chr6	31510080	31510904	DDX39B-AS1	+	lncRNA	chr6	31497995	31514359	ATP6V1G2-DDX39B	-	nonsense_mediated_decay	835	opposite	6783_ID	chr6	31510081	31510904	824	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
56631	ENST00000494856.2	ENST00000342820.10_3	chr4	79820008	79820306	RN7SL127P	+	misc_RNA	chr4	79808280	79860548	PAQR3	-	nonsense_mediated_decay	298	opposite	9961_ID	chr4	79820009	79820306	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	12
71031	ENST00000530479.1_1	ENST00000525967.5_1	chr20	57285850	57286689	AL139349.1	+	lncRNA	chr20	57264186	57290689	NPEPL1	+	protein_coding	839	same	5041_ID	chr20	57285851	57286689	839	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
84311	ENST00000576602.1	ENST00000648772.1_3	chr17	54946307	54946925	RP11-670E13.2	+	lincRNA	chr17	54913747	54991441	TRIM25	-	nonsense_mediated_decay	618	opposite	11927_ID	chr17	54946308	54946925	618	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	12
97081	ENST00000584275.1	ENST00000376185.5_3	chr6	31508877	31508955	SNORD84	-	snoRNA	chr6	31497995	31514359	ATP6V1G2-DDX39B	-	nonsense_mediated_decay	78	same	12454_ID	chr6	31508878	31508955	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
99221	ENST00000585877.1_1	ENST00000590143.5_3	chr18	12670424	12671144	AP005482.2	-	lncRNA	chr18	12661831	12702638	CEP76	-	nonsense_mediated_decay	720	same	6303_ID	chr18	12670425	12671144	720	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	12
100961	ENST00000591432.1_3	ENST00000221462.9_2	chr19	45639250	45640235	AC005757.1	-	lncRNA	chr19	45596436	45650543	PPP1R37	+	protein_coding	985	opposite	354_ID	chr19	45639251	45640235	985	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
104041	ENST00000601161.1_2	ENST00000440558.2	chr19	54728394	54728753	AC245052.7	+	lncRNA	chr19	54720736	54746649	LILRA6	-	protein_coding	359	opposite	4306_ID	chr19	54728395	54728753	359	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	12
108821	ENST00000607978.1_2	ENST00000503687.2_3	chr7	66204815	66205372	AC027644.3	-	lncRNA	chr7	66093944	66276176	AC027644.4	+	nonsense_mediated_decay	557	opposite	2223_ID	chr7	66204816	66205372	557	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	12
111951	ENST00000612794.1_3	ENST00000552941.5_7	chr14	65405870	65409623	GPX2	-	protein_coding	chr14	65381202	65528521	CHURC1-FNTB	+	nonsense_mediated_decay	3754	opposite	7176_ID	chr14	65405871	65409623	3753	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
120851	ENST00000648546.2_2	ENST00000400100.5_1	chr15	25093501	25097400	AC090983.1	+	lncRNA	chr15	25068793	25223729	SNRPN	+	protein_coding	3899	same	2965_ID	chr15	25093502	25097400	3899	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
121981	ENST00000650629.1_3	ENST00000569771.5_1	chr16	70382987	70406069	AC012184.4	-	lncRNA	chr16	70380785	70407284	DDX19A	+	nonsense_mediated_decay	23082	opposite	1346_ID	chr16	70382988	70406069	23082	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	12
124891	ENST00000657099.1_3	ENST00000607772.6_5	chr6	154799115	154800727	AL357075.2	+	lncRNA	chr6	154708648	154831819	CNKSR3	-	protein_coding	1612	opposite	5414_ID	chr6	154799116	154800727	1612	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
20011	ENST00000384830.1	ENST00000262139.10_4	chr17	66420591	66420689	MIR635	-	miRNA	chr17	66417421	66453637	WIPI1	-	protein_coding	98	same	9039_ID	chr17	66420592	66420689	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	12	12
80851	ENST00000565581.1_1	ENST00000648336.2_6	chr15	25590779	25592382	AC100774.1	-	lncRNA	chr15	25578874	25684171	UBE3A	-	protein_coding	1603	same	3406_ID	chr15	25590780	25592382	1603	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	12
120951	ENST00000648694.1_5	ENST00000629319.2_3	chr19	57321444	57352094	PEG3	-	protein_coding	chr19	57285929	57352097	ZIM2	-	protein_coding	30652	same	9535_ID	chr19	57321445	57352094	30650	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	12
38	ENST00000223321.9_4	ENST00000676779.1_1	chr7	42956459	42971773	PSMA2	-	protein_coding	chr7	42948909	42971801	AC010132.3	-	nonsense_mediated_decay	15358	same	9666_ID	chr7	42956460	42971773	15314	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	11
69	ENST00000237837.2_4	ENST00000648100.1_2	chr12	4477392	4488878	FGF23	-	protein_coding	chr12	4382927	4514656	AC008012.1	+	nonsense_mediated_decay	11486	opposite	7024_ID	chr12	4477393	4488878	11486	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
117	ENST00000253407.4_4	ENST00000678938.1_1	chr17	43037060	43045671	C1QL1	-	protein_coding	chr17	43035359	43186357	NMT1	+	protein_coding	8611	opposite	6497_ID	chr17	43037061	43045671	8611	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
211	ENST00000276770.8_1	ENST00000651733.1_3	chrY	6317508	6325947	TTTY7	+	lncRNA	chrY	6279510	6330132	TTTY2B	-	lncRNA	8439	opposite	12820_ID	chrY	6317509	6325947	8439	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
223	ENST00000278980.11_4	ENST00000645058.1_3	chr20	31290500	31331273	COMMD7	-	protein_coding	chr20	31219984	31331373	FO393400.1	-	nonsense_mediated_decay	40773	same	6691_ID	chr20	31290501	31331273	40773	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	11
307	ENST00000297994.4_2	ENST00000540557.1_3	chr9	37753801	37778969	TRMT10B	+	protein_coding	chr9	37588409	38068684	AL138752.2	-	nonsense_mediated_decay	25170	opposite	12788_ID	chr9	37753802	37778969	25168	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
348	ENST00000304355.9_1	ENST00000428463.5_3	chrX	47863733	47869042	SPACA5	+	protein_coding	chrX	47842755	47930508	ZNF630	-	nonsense_mediated_decay	5393	opposite	12501_ID	chrX	47863734	47869042	5309	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
362	ENST00000306494.10_3	ENST00000525620.1_1	chr11	62931247	62997124	SLC22A25	-	protein_coding	chr11	62905338	63137190	SLC22A10	+	processed_transcript	65877	opposite	12079_ID	chr11	62931248	62997124	65877	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
390	ENST00000310604.8_5	ENST00000678938.1_1	chr17	43100713	43138477	DCAKD	-	protein_coding	chr17	43035359	43186357	NMT1	+	protein_coding	37770	opposite	6771_ID	chr17	43100714	43138477	37764	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
425	ENST00000314315.7_3	ENST00000255641.13_2	chr19	1952529	1954548	CSNK1G2-AS1	-	lncRNA	chr19	1941170	1981337	CSNK1G2	+	protein_coding	2056	opposite	6720_ID	chr19	1952530	1954548	2019	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
430	ENST00000315170.13_6	ENST00000460241.2_4	chr3	46753606	46759359	PRSS50	-	protein_coding	chr3	46753604	46854064	AC109583.1	-	protein_coding	5753	same	9660_ID	chr3	46753607	46759359	5753	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	6	11
450	ENST00000318631.8_4	ENST00000639401.1_3	chr3	183533709	183543365	MAP6D1	-	protein_coding	chr3	183533355	183602677	AC131160.1	-	protein_coding	9673	same	7915_ID	chr3	183533710	183543365	9656	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	11
586	ENST00000334662.2_2	ENST00000323084.9_7	chr21	46031995	46032871	KRTAP10-8	+	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	876	opposite	7488_ID	chr21	46031996	46032871	876	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
588	ENST00000334670.9_2	ENST00000323084.9_7	chr21	46066330	46067567	KRTAP10-11	+	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	1237	opposite	7476_ID	chr21	46066331	46067567	1237	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
692	ENST00000355983.3_1	ENST00000536047.5_3	chr3	45927995	45944667	CCR9	+	protein_coding	chr3	45864811	45957216	LZTFL1	-	protein_coding	16672	opposite	6591_ID	chr3	45927996	45944667	16672	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
698	ENST00000357052.8_2	ENST00000600729.2_2	chr19	41284151	41302847	RAB4B	+	protein_coding	chr19	41277552	41302848	MIA-RAB4B	+	nonsense_mediated_decay	18727	same	9691_ID	chr19	41284152	41302847	18696	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	11
733	ENST00000360770.3_3	ENST00000323084.9_7	chr21	46086105	46086844	KRTAP12-2	-	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	739	same	7492_ID	chr21	46086106	46086844	739	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
751	ENST00000362113.1	ENST00000381375.7_5	chr5	54466359	54466450	MIR449A	-	miRNA	chr5	54408798	54469005	CDC20B	-	protein_coding	91	same	8580_ID	chr5	54466360	54466450	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
768	ENST00000362162.1	ENST00000313778.9_6	chr3	49057580	49057667	MIR425	-	miRNA	chr3	49052925	49058684	DALRD3	-	protein_coding	87	same	8453_ID	chr3	49057581	49057667	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
773	ENST00000362177.1	ENST00000309241.10_3	chr5	149112387	149112453	MIR378A	+	miRNA	chr5	149109872	149234585	PPARGC1B	+	protein_coding	66	same	8401_ID	chr5	149112388	149112453	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
834	ENST00000362436.1	ENST00000265239.11_4	chr3	197621377	197621484	RNU6-858P	+	snRNA	chr3	197615947	197686862	IQCG	-	protein_coding	107	opposite	11564_ID	chr3	197621378	197621484	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
876	ENST00000362752.1	ENST00000361306.6_3	chrX	13614354	13614667	RN7SKP20	+	misc_RNA	chrX	13587719	13651694	EGFL6	+	protein_coding	313	same	9819_ID	chrX	13614355	13614667	313	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
950	ENST00000363217.1	ENST00000398958.6_1	chr1	28835070	28835274	SNORA73B	+	snoRNA	chr1	28832454	28865708	RCC1	+	protein_coding	204	same	12205_ID	chr1	28835071	28835274	204	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
955	ENST00000363227.1	ENST00000374706.5_1	chr10	35539886	35539980	RNU6-1167P	-	snRNA	chr10	35535952	35860852	CCNY	+	protein_coding	94	opposite	10873_ID	chr10	35539887	35539980	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
992	ENST00000363411.1	ENST00000392056.8_5	chr2	229034458	229034565	RNU6-624P	+	snRNA	chr2	228844670	229046403	SPHKAP	-	protein_coding	107	opposite	11388_ID	chr2	229034459	229034565	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
999	ENST00000363475.2	ENST00000541775.5_1	chr12	7271380	7271487	RNU6-485P	+	snRNA	chr12	7260903	7274447	C1RL-AS1	+	lncRNA	107	same	11275_ID	chr12	7271381	7271487	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
1074	ENST00000363831.1	ENST00000282111.4_2	chr2	85432048	85432155	RNU6-674P	+	snRNA	chr2	85360514	85537510	TCF7L1	+	protein_coding	107	same	11425_ID	chr2	85432049	85432155	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
1117	ENST00000364047.1	ENST00000341695.10_4	chr4	106328153	106328249	RNU6-553P	+	snRNA	chr4	106290233	106395219	PPA2	-	protein_coding	96	opposite	11333_ID	chr4	106328154	106328249	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
1129	ENST00000364102.1	ENST00000413764.6_3	chr1	210547497	210547611	RNU5A-8P	-	snRNA	chr1	210501595	210849638	HHAT	+	protein_coding	114	opposite	10739_ID	chr1	210547498	210547611	114	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
1168	ENST00000364353.1	ENST00000676559.1_1	chr5	36155220	36155324	RNU6-1305P	+	snRNA	chr5	36152212	36196951	SKP2	+	nonsense_mediated_decay	104	same	10995_ID	chr5	36155221	36155324	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
1179	ENST00000364417.1	ENST00000540557.1_3	chr9	37661743	37662046	RN7SKP171	-	misc_RNA	chr9	37588409	38068684	AL138752.2	-	nonsense_mediated_decay	303	same	9803_ID	chr9	37661744	37662046	303	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
1196	ENST00000364488.1	ENST00000635379.1_3	chr14	50535285	50535591	RN7SKP193	+	misc_RNA	chr14	50427261	50555921	LINC01588	-	lncRNA	306	opposite	9813_ID	chr14	50535286	50535591	306	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
1197	ENST00000364494.1	ENST00000376980.8_4	chr10	22222071	22222367	RN7SKP37	+	misc_RNA	chr10	22045476	22292659	DNAJC1	-	protein_coding	296	opposite	9892_ID	chr10	22222072	22222367	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
1222	ENST00000364626.1	ENST00000282908.10_2	chr4	5460307	5460608	RN7SKP275	-	misc_RNA	chr4	5053206	5502716	STK32B	+	protein_coding	301	opposite	9873_ID	chr4	5460308	5460608	301	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
1233	ENST00000364694.1	ENST00000318950.11_2	chr11	9702470	9702785	RN7SKP50	+	misc_RNA	chr11	9685623	9774540	SWAP70	+	protein_coding	315	same	9901_ID	chr11	9702471	9702785	315	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
1344	ENST00000365314.1	ENST00000490107.6_4	chr1	246352315	246352420	RNU6-1283P	-	snRNA	chr1	245912648	246670581	SMYD3	-	protein_coding	105	same	10978_ID	chr1	246352316	246352420	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
1366	ENST00000365444.1	ENST00000323981.6_3	chr11	93464667	93464740	SNORD6	-	snoRNA	chr11	93463113	93474660	TAF1D	-	nonsense_mediated_decay	73	same	12435_ID	chr11	93464668	93464740	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
1375	ENST00000365536.1	ENST00000361822.8_2	chr7	111928677	111929007	RN7SKP187	+	misc_RNA	chr7	111846749	111983989	ZNF277	+	protein_coding	330	same	9811_ID	chr7	111928678	111929007	330	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
1395	ENST00000365643.1	ENST00000398761.8_3	chr10	74151721	74151827	RNU6-805P	+	snRNA	chr10	74127084	74385949	MICU1	-	protein_coding	106	opposite	11513_ID	chr10	74151722	74151827	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
1569	ENST00000378347.2_1	ENST00000268679.9_5	chr16	89006196	89017932	AC092384.1	+	lncRNA	chr16	88941265	89043615	CBFA2T3	-	protein_coding	11736	opposite	3088_ID	chr16	89006197	89017932	11736	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
1593	ENST00000380095.2_2	ENST00000323084.9_7	chr21	46057272	46058372	KRTAP10-10	+	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	1100	opposite	7475_ID	chr21	46057273	46058372	1100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
1624	ENST00000381365.4_3	ENST00000649830.1_3	chr17	4802830	4806229	C17orf107	+	protein_coding	chr17	4801379	4837733	CHRNE	-	protein_coding	3517	opposite	6483_ID	chr17	4802831	4806229	3399	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
1671	ENST00000383906.1	ENST00000234111.9_4	chr2	10586839	10586975	SNORA80B	-	snoRNA	chr2	10580093	10588453	ODC1	-	protein_coding	136	same	12214_ID	chr2	10586840	10586975	136	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
1672	ENST00000383908.1	ENST00000368843.8_3	chr1	151601799	151601906	RNU6-1062P	+	snRNA	chr1	151584504	151671567	SNX27	+	protein_coding	107	same	10808_ID	chr1	151601800	151601906	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
1686	ENST00000383960.1	ENST00000584307.5_3	chr18	797989	798136	RNU1-109P	-	snRNA	chr18	721587	812547	YES1	-	protein_coding	147	same	10555_ID	chr18	797990	798136	147	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
1695	ENST00000383973.1	ENST00000396199.7_3	chr1	48809880	48809987	RNU6-723P	+	snRNA	chr1	48761045	48937880	SPATA6	-	protein_coding	107	opposite	11453_ID	chr1	48809881	48809987	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
1724	ENST00000384042.1	ENST00000262717.9_2	chr18	59058827	59058936	RNU6-116P	+	snRNA	chr18	59000662	59223012	CDH20	+	protein_coding	109	same	10875_ID	chr18	59058828	59058936	109	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
1737	ENST00000384092.1	ENST00000523094.5_4	chr5	157236105	157236212	RNU6-260P	+	snRNA	chr5	157212750	157286153	CLINT1	-	protein_coding	107	opposite	11110_ID	chr5	157236106	157236212	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
1763	ENST00000384183.1	ENST00000321394.12_4	chr6	160206625	160206765	SNORA29	-	snoRNA	chr6	160199529	160210634	TCP1	-	protein_coding	140	same	12165_ID	chr6	160206626	160206765	140	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
1769	ENST00000384193.1	ENST00000298125.7_2	chr13	52160559	52160668	RNY1P6	-	misc_RNA	chr13	52158597	52341845	WDFY2	+	protein_coding	109	opposite	11835_ID	chr13	52160560	52160668	109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
1773	ENST00000384197.1	ENST00000380968.6_4	chr14	75487463	75487570	RNU6-689P	+	snRNA	chr14	75480471	75518235	MLH3	-	protein_coding	107	opposite	11432_ID	chr14	75487464	75487570	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
1779	ENST00000384209.1	ENST00000356463.7_7	chrX	48939685	48939823	RNU4-52P	+	snRNA	chrX	48932298	48958059	WDR45	-	protein_coding	138	opposite	10691_ID	chrX	48939686	48939823	138	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
1791	ENST00000384242.1	ENST00000392745.8_5	chr14	103332192	103332300	RNU6-1316P	+	snRNA	chr14	103243785	103377837	TRAF3	+	protein_coding	108	same	11001_ID	chr14	103332193	103332300	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
1810	ENST00000384296.1	ENST00000498286.6_4	chr6	74173795	74173900	RNU6-975P	+	snRNA	chr6	74171459	74218959	MTO1	+	protein_coding	105	same	11647_ID	chr6	74173796	74173900	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
1811	ENST00000384302.1	ENST00000369902.8_2	chr10	104351280	104351387	RNU6-43P	+	snRNA	chr10	104263728	104393292	SUFU	+	protein_coding	107	same	11244_ID	chr10	104351281	104351387	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
1907	ENST00000384580.1	ENST00000264245.9_4	chr3	119060680	119060787	RNU6-1127P	-	snRNA	chr3	119013229	119139561	ARHGAP31	+	protein_coding	107	opposite	10843_ID	chr3	119060681	119060787	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
1920	ENST00000384603.1	ENST00000428202.7_6	chr5	75005319	75005424	RNU6-680P	-	snRNA	chr5	74969948	75013262	POC5	-	protein_coding	105	same	11429_ID	chr5	75005320	75005424	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
1982	ENST00000384787.1	ENST00000382374.9_4	chr13	22125442	22125549	RNU6-59P	-	snRNA	chr13	22066829	22178309	MICU2	-	protein_coding	107	same	11367_ID	chr13	22125443	22125549	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
2100	ENST00000384995.1	ENST00000381375.7_5	chr5	54466473	54466570	MIR449B	-	miRNA	chr5	54408798	54469005	CDC20B	-	protein_coding	97	same	8581_ID	chr5	54466474	54466570	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
2127	ENST00000385035.1	ENST00000475057.5_4	chr6	45165410	45165507	MIR586	-	miRNA	chr6	44777053	45345690	SUPT3H	-	nonsense_mediated_decay	97	same	8990_ID	chr6	45165411	45165507	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
2161	ENST00000385086.1	ENST00000360315.7_2	chr19	19545871	19545967	MIR640	+	miRNA	chr19	19496641	19619740	GATAD2A	+	protein_coding	96	same	9048_ID	chr19	19545872	19545967	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
2203	ENST00000385216.1	ENST00000409830.6_3	chr2	189162218	189162315	MIR561	+	miRNA	chr2	189156600	189460653	GULP1	+	protein_coding	97	same	8946_ID	chr2	189162219	189162315	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
2347	ENST00000390793.2	ENST00000618015.4_3	chr5	35034256	35034347	AC010368.1	-	miRNA	chr5	34998205	35048240	AGXT2	-	protein_coding	91	same	1071_ID	chr5	35034257	35034347	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
2440	ENST00000391196.1	ENST00000329276.10_2	chr20	2636742	2636828	SNORD86	+	snoRNA	chr20	2633277	2639039	NOP56	+	protein_coding	86	same	12456_ID	chr20	2636743	2636828	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
2449	ENST00000391233.1	ENST00000436874.6_2	chr12	95684467	95684575	RNU6-808P	+	snRNA	chr12	95611582	95696575	VEZT	+	protein_coding	108	same	11516_ID	chr12	95684468	95684575	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
2451	ENST00000391262.1	ENST00000634644.1_3	chr21	16986601	16986708	RNU6-1326P	+	snRNA	chr21	16742818	16999577	AJ009632.2	-	lncRNA	107	opposite	11009_ID	chr21	16986602	16986708	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
2463	ENST00000391617.1_3	ENST00000323084.9_7	chr21	46101490	46102078	KRTAP12-1	-	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	588	same	7491_ID	chr21	46101491	46102078	588	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
2464	ENST00000391618.1_3	ENST00000323084.9_7	chr21	46074129	46074576	KRTAP12-4	-	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	447	same	7494_ID	chr21	46074130	46074576	447	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
2465	ENST00000391620.2_3	ENST00000323084.9_7	chr21	45977672	45978678	KRTAP10-3	-	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	1006	same	7479_ID	chr21	45977673	45978678	1006	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
2466	ENST00000391621.1_3	ENST00000323084.9_7	chr21	45970239	45971388	KRTAP10-2	-	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	1149	same	7478_ID	chr21	45970240	45971388	1149	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
2523	ENST00000397907.1_3	ENST00000323084.9_7	chr21	46077848	46078258	KRTAP12-3	+	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	410	opposite	7493_ID	chr21	46077849	46078258	410	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
2524	ENST00000397911.5_3	ENST00000323084.9_7	chr21	46047009	46048295	KRTAP10-9	+	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	1286	opposite	7490_ID	chr21	46047010	46048295	1286	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
2544	ENST00000400365.3_3	ENST00000323084.9_7	chr21	46117086	46117959	KRTAP10-12	+	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	873	opposite	7477_ID	chr21	46117087	46117959	873	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
2545	ENST00000400368.1_5	ENST00000323084.9_7	chr21	46011148	46012386	KRTAP10-6	-	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	1238	same	7484_ID	chr21	46011149	46012386	1238	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
2547	ENST00000400372.1_3	ENST00000323084.9_7	chr21	45999331	46000481	KRTAP10-5	-	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	1150	same	7482_ID	chr21	45999332	46000481	1150	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
2549	ENST00000400375.1_3	ENST00000323084.9_7	chr21	45958863	45960078	KRTAP10-1	-	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	1215	same	7474_ID	chr21	45958864	45960078	1215	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
2600	ENST00000401290.1	ENST00000327247.9_3	chr1	155206539	155206628	AL713999.1	-	miRNA	chr1	155204242	155214461	GBA	-	protein_coding	89	same	5892_ID	chr1	155206540	155206628	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
2651	ENST00000408094.1	ENST00000366898.6_5	chr6	162036097	162036191	AL035697.1	+	miRNA	chr6	161768448	163148798	PRKN	-	protein_coding	94	opposite	4616_ID	chr6	162036098	162036191	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
2685	ENST00000408189.1	ENST00000329276.10_2	chr20	2634857	2634932	SNORD110	+	snoRNA	chr20	2633277	2639039	NOP56	+	protein_coding	75	same	12232_ID	chr20	2634858	2634932	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
2699	ENST00000408243.1	ENST00000323981.6_3	chr11	93466839	93466930	MIR1304	-	miRNA	chr11	93463113	93474660	TAF1D	-	nonsense_mediated_decay	91	same	8076_ID	chr11	93466840	93466930	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
2754	ENST00000408369.2	ENST00000265000.9_2	chr4	174189310	174189384	MIR548T	+	miRNA	chr4	174089961	174245118	GALNT7	+	protein_coding	74	same	8916_ID	chr4	174189311	174189384	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
2804	ENST00000408503.1	ENST00000297107.11_2	chr5	153726665	153726807	MIR1294	+	miRNA	chr5	153570292	153800544	GALNT10	+	protein_coding	142	same	8061_ID	chr5	153726666	153726807	142	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
2831	ENST00000408554.2	ENST00000378392.6_2	chr20	10036967	10037063	AL109754.1	+	miRNA	chr20	10015634	10038951	ANKEF1	+	protein_coding	96	same	4701_ID	chr20	10036968	10037063	96	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	11
2876	ENST00000408652.1	ENST00000282111.4_2	chr2	85526156	85526241	AC093162.1	+	miRNA	chr2	85360514	85537510	TCF7L1	+	protein_coding	85	same	3186_ID	chr2	85526157	85526241	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
2879	ENST00000408663.1	ENST00000409682.8_2	chr2	162206727	162206871	AC009299.1	-	miRNA	chr2	162164935	162268228	PSMD14	+	protein_coding	144	opposite	941_ID	chr2	162206728	162206871	144	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
2992	ENST00000409729.1_1	ENST00000426480.2_4	chr2	198364863	198368020	HSPE1	+	protein_coding	chr2	198351309	198381461	HSPD1	-	protein_coding	3310	opposite	7313_ID	chr2	198364864	198368020	3157	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
3055	ENST00000410365.1	ENST00000648911.1_4	chr11	125444614	125444714	RNU6-1156P	+	snRNA	chr11	125312776	125462405	FEZ1	-	protein_coding	100	opposite	10862_ID	chr11	125444615	125444714	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
3085	ENST00000410442.1	ENST00000441595.2_5	chr10	28599781	28599888	AC022021.1	+	miRNA	chr10	28343071	28623415	MPP7	-	protein_coding	107	opposite	1813_ID	chr10	28599782	28599888	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
3123	ENST00000410611.1	ENST00000650135.1_1	chr10	25682485	25682773	RN7SKP220	-	misc_RNA	chr10	25463730	25891149	GPR158	+	protein_coding	288	opposite	9830_ID	chr10	25682486	25682773	288	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
3149	ENST00000410747.1	ENST00000261714.11_4	chr17	28615088	28615195	RNU6-1267P	-	snRNA	chr17	28575220	28618962	BLMH	-	protein_coding	107	same	10959_ID	chr17	28615089	28615195	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
3176	ENST00000410878.1	ENST00000647613.1_3	chrX	71596828	71597019	RNU2-68P	-	snRNA	chrX	71521540	71792693	AL133500.1	-	nonsense_mediated_decay	191	same	10653_ID	chrX	71596829	71597019	191	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
3192	ENST00000410983.1	ENST00000615189.5_3	chr22	30817033	30817137	RNU6-564P	+	snRNA	chr22	30793006	30821291	SEC14L2	+	protein_coding	104	same	11340_ID	chr22	30817034	30817137	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
3221	ENST00000411131.1	ENST00000536438.5_3	chr6	35668779	35668915	AL157823.1	-	miRNA	chr6	35541361	35696360	FKBP5	-	protein_coding	136	same	5075_ID	chr6	35668780	35668915	136	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
3229	ENST00000411175.1	ENST00000357917.4_3	chr10	62672522	62672685	RNU2-72P	-	snRNA	chr10	62629195	62761198	RHOBTB1	-	protein_coding	163	same	10657_ID	chr10	62672523	62672685	163	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
3231	ENST00000411185.1	ENST00000317757.7_2	chr3	190359951	190360292	RN7SKP296	+	misc_RNA	chr3	190231890	190377539	IL1RAP	+	protein_coding	341	same	9887_ID	chr3	190359952	190360292	341	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
3236	ENST00000411243.1	ENST00000396199.7_3	chr1	48913607	48913714	RNU4-61P	+	snRNA	chr1	48761045	48937880	SPATA6	-	protein_coding	107	opposite	10699_ID	chr1	48913608	48913714	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
3273	ENST00000411442.1_1	ENST00000369208.8_4	chr6	100874993	100885360	SIM1-AS1	+	lncRNA	chr6	100832884	100912797	SIM1	-	protein_coding	10367	opposite	12065_ID	chr6	100874994	100885360	10367	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
3314	ENST00000412181.1_1	ENST00000303407.12_8	chr9	136919411	136923927	AL445931.1	+	lncRNA	chr9	136895426	136933148	BRD3	-	protein_coding	4516	opposite	5636_ID	chr9	136919412	136923927	4516	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
3377	ENST00000414042.1_3	ENST00000491935.5_3	chr20	60880487	60881381	AL354836.1	-	lncRNA	chr20	60877148	60883918	ADRM1	+	protein_coding	894	opposite	5291_ID	chr20	60880488	60881381	894	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	11
3463	ENST00000415765.1_3	ENST00000366933.5_2	chr1	217954539	217958462	SPATA17-AS1	-	lncRNA	chr1	217804685	218045038	SPATA17	+	protein_coding	3923	opposite	12511_ID	chr1	217954540	217958462	3923	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	11
3551	ENST00000418500.1_8	ENST00000319550.9_2	chr6	116446501	116479910	COL10A1	-	protein_coding	chr6	116422015	116570660	NT5DC1	+	protein_coding	39839	opposite	6685_ID	chr6	116446502	116479910	33409	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
3554	ENST00000418554.1_1	ENST00000330387.11_4	chr7	137638093	137642712	CREB3L2-AS1	+	lncRNA	chr7	137559724	137686832	CREB3L2	-	protein_coding	4619	opposite	6712_ID	chr7	137638094	137642712	4619	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
3649	ENST00000421114.1_3	ENST00000426428.5_3	chr1	20738796	20739746	AL139254.1	-	lncRNA	chr1	20687071	20755275	LINC01141	-	lncRNA	950	same	5025_ID	chr1	20738797	20739746	950	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
3658	ENST00000421353.2_2	ENST00000651733.1_3	chrY	6311474	6318726	TTTY21B	+	lncRNA	chrY	6279510	6330132	TTTY2B	-	lncRNA	7252	opposite	12817_ID	chrY	6311475	6318726	7252	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
3689	ENST00000422014.1	ENST00000343518.6	chr22	16274559	16278602	POTEH-AS1	+	antisense	chr22	16256440	16287937	POTEH	-	protein_coding	4043	opposite	9600_ID	chr22	16274560	16278602	4043	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	11
3696	ENST00000422153.1_1	ENST00000452671.7_5	chr1	151313123	151314442	AL391069.1	+	lncRNA	chr1	151313115	151319728	RFX5	-	protein_coding	1319	opposite	5568_ID	chr1	151313124	151314442	1319	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
3718	ENST00000422675.1_1	ENST00000376603.6_1	chr10	22650100	22701996	AL513128.1	+	lncRNA	chr10	22634373	22706525	SPAG6	+	protein_coding	51896	same	5701_ID	chr10	22650101	22701996	51896	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	11
3827	ENST00000425454.1_3	ENST00000433971.5_1	chr3	188956474	188958383	TPRG1-AS2	-	lncRNA	chr3	188665002	189038850	TPRG1	+	protein_coding	1909	opposite	12771_ID	chr3	188956475	188958383	1909	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	11
3839	ENST00000425820.1_1	ENST00000370966.9_4	chr1	68944811	68949222	AL138789.1	+	lncRNA	chr1	68939834	68962904	DEPDC1	-	protein_coding	4411	opposite	4974_ID	chr1	68944812	68949222	4411	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	11
3849	ENST00000426386.2_1	ENST00000490107.6_4	chr1	246189198	246198905	AC118555.1	+	lncRNA	chr1	245912648	246670581	SMYD3	-	protein_coding	9707	opposite	3946_ID	chr1	246189199	246198905	9707	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
3859	ENST00000426929.1_3	ENST00000490107.6_4	chr1	246484964	246485740	SMYD3-IT1	-	lncRNA	chr1	245912648	246670581	SMYD3	-	protein_coding	776	same	12140_ID	chr1	246484965	246485740	776	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
3889	ENST00000428263.1_1	ENST00000378933.5_5	chrX	30852739	30853417	TAB3-AS1	+	lncRNA	chrX	30845558	30993201	TAB3	-	protein_coding	678	opposite	12593_ID	chrX	30852740	30853417	678	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
3917	ENST00000428872.6_1	ENST00000396556.6_4	chr3	31745704	31763072	OSBPL10-AS1	+	lncRNA	chr3	31699381	32022794	OSBPL10	-	protein_coding	17595	opposite	9479_ID	chr3	31745705	31763072	17368	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
3948	ENST00000429700.1_3	ENST00000375835.9_5	chr9	91703801	91724849	AL353150.1	-	lncRNA	chr9	91620685	91793733	SHC3	-	protein_coding	21331	same	5235_ID	chr9	91703802	91724849	21048	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
3952	ENST00000429872.1_1	ENST00000537384.6_5	chr7	642821	648119	PRKAR1B-AS1	+	lncRNA	chr7	588834	766918	PRKAR1B	-	protein_coding	5298	opposite	9633_ID	chr7	642822	648119	5298	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	11
4018	ENST00000431638.1_1	ENST00000398761.8_3	chr10	74261503	74262714	AL513185.1	+	lncRNA	chr10	74127084	74385949	MICU1	-	protein_coding	75050	opposite	5702_ID	chr10	74261504	74262714	1211	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
4035	ENST00000432081.1_1	ENST00000472647.5_6	chr1	169279902	169291717	Z99758.1	+	lncRNA	chr1	169101768	169337184	NME7	-	protein_coding	11815	opposite	12990_ID	chr1	169279903	169291717	11815	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
4063	ENST00000432901.4_2	ENST00000677174.1_1	chr20	18118506	18123813	PET117	+	protein_coding	chr20	18117871	18168995	KAT14	+	protein_coding	5307	same	9536_ID	chr20	18118507	18123813	5307	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
4093	ENST00000433581.1_1	ENST00000282111.4_2	chr2	85413531	85414376	TCF7L1-IT1	+	lncRNA	chr2	85360514	85537510	TCF7L1	+	protein_coding	845	same	12645_ID	chr2	85413532	85414376	845	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
4094	ENST00000433588.1_3	ENST00000634644.1_3	chr21	16866250	16868443	AJ009632.1	-	lncRNA	chr21	16742818	16999577	AJ009632.2	-	lncRNA	2193	same	4421_ID	chr21	16866251	16868443	2193	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
4104	ENST00000434195.1_3	ENST00000336648.8_3	chr21	38176284	38178585	HLCS-IT1	-	lncRNA	chr21	38123188	38362536	HLCS	-	protein_coding	2301	same	7240_ID	chr21	38176285	38178585	2301	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
4125	ENST00000434772.8_2	ENST00000591793.1_1	chr19	44556188	44572152	ZNF223	+	protein_coding	chr19	44529505	44591471	AC067968.1	+	nonsense_mediated_decay	16633	same	13030_ID	chr19	44556189	44572152	15964	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
4199	ENST00000436582.1_1	ENST00000264260.6_2	chr2	103050416	103051800	AC007278.2	+	lncRNA	chr2	103035148	103069025	IL18RAP	+	protein_coding	1384	same	534_ID	chr2	103050417	103051800	1384	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
4210	ENST00000436942.1_1	ENST00000368642.4_4	chr10	132893480	132894040	TCERG1L-AS1	+	lncRNA	chr10	132890653	133109984	TCERG1L	-	protein_coding	560	opposite	12642_ID	chr10	132893481	132894040	560	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
4212	ENST00000436991.1_3	ENST00000374332.8_2	chr1	25971034	25985602	AL031280.1	-	lncRNA	chr1	25943958	26112698	MAN1C1	+	protein_coding	14568	opposite	4512_ID	chr1	25971035	25985602	14568	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
4265	ENST00000438597.1_3	ENST00000367007.5_4	chr1	211305929	211306716	KCNH1-IT1	-	lncRNA	chr1	210850164	211307471	KCNH1	-	protein_coding	787	same	7414_ID	chr1	211305930	211306716	787	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
4279	ENST00000438919.1_3	ENST00000374001.6_3	chr10	52582451	52584285	AL512366.1	-	lncRNA	chr10	52559168	52645435	A1CF	-	protein_coding	1834	same	5683_ID	chr10	52582452	52584285	1834	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
4309	ENST00000439621.1_1	ENST00000371494.9_5	chr1	53580247	53584281	AL445183.2	+	lncRNA	chr1	53552854	53608310	SLC1A7	-	protein_coding	4034	opposite	5613_ID	chr1	53580248	53584281	4034	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
4348	ENST00000440688.1_3	ENST00000331565.5_2	chr1	110720264	110721341	AL355990.1	-	lncRNA	chr1	110693115	110744824	SLC6A17	+	protein_coding	1077	opposite	5365_ID	chr1	110720265	110721341	1077	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
4368	ENST00000441266.5_3	ENST00000392027.3_3	chr2	233244344	233246384	AC068134.1	-	lncRNA	chr2	233243460	233247599	ALPP	+	protein_coding	2040	opposite	2392_ID	chr2	233244345	233246384	2040	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
4390	ENST00000442027.5_3	ENST00000664495.1_1	chr1	61714616	61719182	NFIA-AS1	-	lncRNA	chr1	61331003	61923683	NFIA	+	nonsense_mediated_decay	4566	opposite	9257_ID	chr1	61714617	61719182	4566	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
4397	ENST00000442179.1_1	ENST00000621426.6_4	chr20	31037557	31041410	AL034550.1	+	lncRNA	chr20	31030864	31172692	NOL4L	-	protein_coding	3853	opposite	4591_ID	chr20	31037558	31041410	3853	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	11
4403	ENST00000442359.3_5	ENST00000460241.2_4	chr3	46783839	46792381	PRSS45P	-	protein_coding	chr3	46753604	46854064	AC109583.1	-	protein_coding	8800	same	9658_ID	chr3	46783840	46792381	8542	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
4404	ENST00000442384.1_3	ENST00000296452.5_2	chr3	49677915	49679202	BSN-AS1	-	lncRNA	chr3	49591909	49708982	BSN	+	protein_coding	1287	opposite	6434_ID	chr3	49677916	49679202	1287	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
4420	ENST00000442757.1_3	ENST00000330889.8_5	chr17	29283297	29283979	AC138207.1	-	lncRNA	chr17	29248962	29286340	ADAP2	+	protein_coding	682	opposite	4179_ID	chr17	29283298	29283979	682	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	11
4448	ENST00000443763.1_2	ENST00000490107.6_4	chr1	246271927	246277168	SMYD3-AS1	+	lncRNA	chr1	245912648	246670581	SMYD3	-	protein_coding	5241	opposite	12139_ID	chr1	246271928	246277168	5241	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
4452	ENST00000443935.5_3	ENST00000327451.11_2	chr22	18062922	18071958	AC007666.1	-	lncRNA	chr22	18043197	18073761	SLC25A18	+	protein_coding	9036	opposite	629_ID	chr22	18062923	18071958	9036	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
4471	ENST00000444610.7_4	ENST00000642706.1_3	chr13	52342130	52378298	DHRS12	-	protein_coding	chr13	52338086	52419295	AL162377.3	-	nonsense_mediated_decay	36170	same	6793_ID	chr13	52342131	52378298	36168	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	4	11
4488	ENST00000445107.1_3	ENST00000381163.7_2	chrX	2770780	2771801	GYG2-AS1	-	lncRNA	chrX	2746862	2800859	GYG2	+	protein_coding	1021	opposite	7201_ID	chrX	2770781	2771801	1021	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
4624	ENST00000448857.1_1	ENST00000375263.8_5	chr9	99008743	99012675	HSD17B3-AS1	+	lncRNA	chr9	98997587	99064458	HSD17B3	-	protein_coding	3932	opposite	7306_ID	chr9	99008744	99012675	3932	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	11
4678	ENST00000450575.1_3	ENST00000367584.8_2	chr6	143875461	143883168	PHACTR2-AS1	-	lncRNA	chr6	143857981	144145301	PHACTR2	+	protein_coding	7707	opposite	9546_ID	chr6	143875462	143883168	7707	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
4683	ENST00000450893.1_1	ENST00000264260.6_2	chr2	103055172	103056935	AC007278.1	+	lncRNA	chr2	103035148	103069025	IL18RAP	+	protein_coding	1763	same	533_ID	chr2	103055173	103056935	1763	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
4707	ENST00000451318.2_3	ENST00000476719.1_3	chr9	135644351	135645599	AL445645.1	-	lncRNA	chr9	135600964	135754164	AK8	-	processed_transcript	1248	same	5632_ID	chr9	135644352	135645599	1248	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
4708	ENST00000451340.2_1	ENST00000381971.8_6	chr9	3898641	3901248	GLIS3-AS1	+	lncRNA	chr9	3824126	4300068	GLIS3	-	protein_coding	2607	opposite	7134_ID	chr9	3898642	3901248	2607	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	11
4760	ENST00000452481.1_3	ENST00000619550.4_1	chr20	43006382	43024346	HNF4A-AS1	-	lncRNA	chr20	42984440	43061483	HNF4A	+	protein_coding	22961	opposite	7248_ID	chr20	43006383	43024346	17964	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
4781	ENST00000453128.1_3	ENST00000369503.9_2	chr1	116556433	116560326	AL365318.1	-	lncRNA	chr1	116519133	116612675	SLC22A15	+	protein_coding	3893	opposite	5541_ID	chr1	116556434	116560326	3893	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
4814	ENST00000454037.1_3	ENST00000362003.9_1	chr4	758274	758862	AC139887.1	-	lncRNA	chr4	699553	764428	PCGF3	+	protein_coding	588	opposite	4215_ID	chr4	758275	758862	588	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	11
4872	ENST00000455642.1_4	ENST00000619550.4_1	chr20	43018263	43020177	AL117382.2	-	lncRNA	chr20	42984440	43061483	HNF4A	+	protein_coding	1914	opposite	4733_ID	chr20	43018264	43020177	1914	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
4910	ENST00000456688.2_1	ENST00000642706.1_3	chr13	52378432	52387968	AL162377.1	+	lncRNA	chr13	52338086	52419295	AL162377.3	-	nonsense_mediated_decay	9995	opposite	5189_ID	chr13	52378433	52387968	9536	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	11
4966	ENST00000458154.1_3	ENST00000454636.1	chr22	20330725	20331888	AC007731.2	-	lncRNA	chr22	20326327	20350457	XXbac-B33L19.3	+	antisense	1163	opposite	643_ID	chr22	20330726	20331888	1163	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
4968	ENST00000458171.1_1	ENST00000376215.10_2	chr10	27006563	27007707	AL390961.2	+	lncRNA	chr10	26986629	27035727	PDSS1	+	protein_coding	1144	same	5565_ID	chr10	27006564	27007707	1144	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
5020	ENST00000458881.1	ENST00000369483.5_4	chr1	117134727	117134821	AL355794.1	-	miRNA	chr1	117117020	117210377	IGSF3	-	protein_coding	94	same	5351_ID	chr1	117134728	117134821	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
5066	ENST00000459204.1	ENST00000647319.1_1	chr15	70023078	70023161	AC009677.1	-	miRNA	chr15	69921122	70133167	DRAIC	+	lncRNA	83	opposite	984_ID	chr15	70023079	70023161	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
5145	ENST00000459853.2	ENST00000216484.7_3	chr14	78013910	78014212	RN7SL587P	-	misc_RNA	chr14	77972339	78082980	SPTLC2	-	protein_coding	302	same	10287_ID	chr14	78013911	78014212	302	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
5147	ENST00000460079.2	ENST00000488612.5_2	chr14	68616336	68616625	RN7SL706P	-	misc_RNA	chr14	68286545	69196935	RAD51B	+	protein_coding	289	opposite	10376_ID	chr14	68616337	68616625	289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
5163	ENST00000461517.2	ENST00000267845.8_4	chr15	50536827	50537128	RN7SL494P	-	misc_RNA	chr15	50534143	50557923	HDC	-	protein_coding	301	same	10225_ID	chr15	50536828	50537128	301	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
5237	ENST00000466292.1_3	ENST00000264245.9_4	chr3	119033139	119041607	ARHGAP31-AS1	-	lncRNA	chr3	119013229	119139561	ARHGAP31	+	protein_coding	8468	opposite	6335_ID	chr3	119033140	119041607	8468	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
5286	ENST00000469747.2_3	ENST00000295851.10_6	chr2	204193181	204193949	AC080075.1	-	lncRNA	chr2	204193116	204312451	ABI2	+	protein_coding	768	opposite	2701_ID	chr2	204193182	204193949	768	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	11
5324	ENST00000471800.2	ENST00000490638.5_3	chr9	35671772	35672039	RN7SL22P	+	misc_RNA	chr9	35658871	35675863	ARHGEF39	-	nonsense_mediated_decay	267	opposite	10037_ID	chr9	35671773	35672039	267	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
5331	ENST00000472323.1_1	ENST00000675478.1_1	chr3	114819269	114821908	ZBTB20-AS4	+	lncRNA	chr3	114033346	114866135	ZBTB20	-	protein_coding	2639	opposite	12999_ID	chr3	114819270	114821908	2639	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
5332	ENST00000472338.2	ENST00000409035.1_3	chr19	16650498	16650795	RN7SL146P	-	misc_RNA	chr19	16589877	16739015	AC008764.1	-	nonsense_mediated_decay	297	same	9976_ID	chr19	16650499	16650795	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
5420	ENST00000478301.1_1	ENST00000675478.1_1	chr3	114403426	114406456	ZBTB20-AS2	+	lncRNA	chr3	114033346	114866135	ZBTB20	-	protein_coding	3030	opposite	12997_ID	chr3	114403427	114406456	3030	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
5441	ENST00000479299.2_3	ENST00000324432.9_2	chr7	76103903	76108173	AC005522.1	-	lncRNA	chr7	76091017	76135308	DTX2	+	protein_coding	4270	opposite	307_ID	chr7	76103904	76108173	4270	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
5474	ENST00000481903.2	ENST00000488612.5_2	chr14	68702961	68703256	RN7SL108P	-	misc_RNA	chr14	68286545	69196935	RAD51B	+	protein_coding	295	opposite	9943_ID	chr14	68702962	68703256	295	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
5485	ENST00000482700.2	ENST00000298125.7_2	chr13	52168056	52168351	RN7SL413P	-	misc_RNA	chr13	52158597	52341845	WDFY2	+	protein_coding	295	opposite	10166_ID	chr13	52168057	52168351	295	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
5492	ENST00000483160.2	ENST00000369902.8_2	chr10	104285721	104286001	RN7SL21P	+	misc_RNA	chr10	104263728	104393292	SUFU	+	protein_coding	280	same	10029_ID	chr10	104285722	104286001	280	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
5540	ENST00000486087.2	ENST00000297107.11_2	chr5	153728987	153729283	RN7SL655P	+	misc_RNA	chr5	153570292	153800544	GALNT10	+	protein_coding	296	same	10341_ID	chr5	153728988	153729283	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
5602	ENST00000491172.2	ENST00000345044.10_1	chr22	24221681	24221977	RN7SL268P	-	misc_RNA	chr22	24198889	24228496	SLC2A11	+	protein_coding	296	opposite	10066_ID	chr22	24221682	24221977	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
5678	ENST00000496638.1_3	ENST00000340258.10_2	chr10	45466428	45474238	DEPP1	-	processed_transcript	chr10	45455249	45491339	RASSF4	+	protein_coding	7829	opposite	6789_ID	chr10	45466429	45474238	7810	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
5682	ENST00000496876.1_3	ENST00000479558.5_3	chr2	182537814	182545274	NEUROD1	-	processed_transcript	chr2	182409454	182545392	CERKL	-	processed_transcript	7460	same	9253_ID	chr2	182537815	182545274	7460	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	11
5696	ENST00000497900.2	ENST00000490508.5_1	chr2	85595404	85595701	RN7SL113P	+	misc_RNA	chr2	85581848	85618875	ELMOD3	+	processed_transcript	297	same	9948_ID	chr2	85595405	85595701	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
5706	ENST00000498630.1_1	ENST00000675478.1_1	chr3	114591960	114595361	ZBTB20-AS3	+	lncRNA	chr3	114033346	114866135	ZBTB20	-	protein_coding	3401	opposite	12998_ID	chr3	114591961	114595361	3401	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
5752	ENST00000501794.2_1	ENST00000381937.9_4	chr5	36221156	36222004	NADK2-AS1	+	lncRNA	chr5	36192690	36242027	NADK2	-	protein_coding	848	opposite	9221_ID	chr5	36221157	36222004	848	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
5794	ENST00000503787.6_2	ENST00000381375.7_5	chr5	54455998	54463125	GPX8	+	protein_coding	chr5	54408798	54469005	CDC20B	-	protein_coding	7131	opposite	7177_ID	chr5	54455999	54463125	7127	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
5890	ENST00000506592.1_2	ENST00000646290.1_3	chr5	135148355	135162271	AC114296.1	+	lncRNA	chr5	134914891	135225459	SLC25A48	+	protein_coding	23042	same	3860_ID	chr5	135148356	135162271	13916	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
5892	ENST00000506601.1_1	ENST00000534099.5_3	chr11	8081584	8090920	TUB-AS1	+	lncRNA	chr11	8040790	8123327	TUB	+	protein_coding	9336	same	12821_ID	chr11	8081585	8090920	9336	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
5952	ENST00000508440.1_2	ENST00000402114.6_3	chr2	48896935	48960287	GTF2A1L	+	protein_coding	chr2	48757063	49003656	STON1-GTF2A1L	+	protein_coding	115351	same	7198_ID	chr2	48896936	48960287	63352	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	11
6003	ENST00000510225.1_1	ENST00000284637.14_4	chr4	170122944	170141500	AC096741.1	+	lncRNA	chr4	170015409	170192107	SH3RF1	-	protein_coding	18556	opposite	3294_ID	chr4	170122945	170141500	18556	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
6065	ENST00000511989.5_1	ENST00000263925.8_4	chr4	54368030	54415745	LNX1-AS1	+	lncRNA	chr4	54325467	54457653	LNX1	-	protein_coding	53179	opposite	7844_ID	chr4	54368031	54415745	47715	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
6087	ENST00000512514.1_3	ENST00000305572.12_1	chr4	106848218	106853879	AC109361.2	-	lncRNA	chr4	106816607	106892827	NPNT	+	protein_coding	5663	opposite	3754_ID	chr4	106848219	106853879	5661	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
6168	ENST00000515186.1_3	ENST00000389737.5_5	chr4	8455136	8456669	AC105345.2	-	lncRNA	chr4	8442503	8478282	TRMT44	+	protein_coding	1533	opposite	3613_ID	chr4	8455137	8456669	1533	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	11
6209	ENST00000515914.1	ENST00000476719.1_3	chr9	135729204	135729269	RNU6-357P	+	snRNA	chr9	135600964	135754164	AK8	-	processed_transcript	65	opposite	11178_ID	chr9	135729205	135729269	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
6211	ENST00000515916.1	ENST00000395965.8_7	chr5	92956401	92956494	MIR2277	-	miRNA	chr5	92953430	93447368	FAM172A	-	protein_coding	93	same	8197_ID	chr5	92956402	92956494	93	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
6217	ENST00000515936.1	ENST00000540557.1_3	chr9	37936703	37936765	RNU7-124P	-	snRNA	chr9	37588409	38068684	AL138752.2	-	nonsense_mediated_decay	62	same	11711_ID	chr9	37936704	37936765	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
6243	ENST00000516025.1	ENST00000467062.5_1	chr9	15431896	15432004	RNU6-319P	-	snRNA	chr9	15422731	15465951	SNAPC3	+	nonsense_mediated_decay	108	opposite	11152_ID	chr9	15431897	15432004	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
6248	ENST00000516047.1	ENST00000381375.7_5	chr5	54468089	54468181	MIR449C	-	miRNA	chr5	54408798	54469005	CDC20B	-	protein_coding	92	same	8582_ID	chr5	54468090	54468181	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
6256	ENST00000516063.1	ENST00000652107.1_2	chr2	48008517	48008604	RNU6-688P	+	snRNA	chr2	47922957	48037202	MSH6	+	protein_coding	87	same	11431_ID	chr2	48008518	48008604	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
6314	ENST00000516221.1	ENST00000676423.1_1	chr4	154186813	154186907	RNU6-1196P	-	snRNA	chr4	154073314	154260463	TRIM2	+	protein_coding	94	opposite	10900_ID	chr4	154186814	154186907	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
6339	ENST00000516295.1	ENST00000507440.5_4	chr4	65263411	65263505	RNU6-191P	-	snRNA	chr4	65140974	65275186	TECRL	-	protein_coding	94	same	11060_ID	chr4	65263412	65263505	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
6377	ENST00000516411.1	ENST00000321196.8_2	chr12	83415668	83415771	RNU6-977P	+	snRNA	chr12	83080684	83528645	TMTC2	+	protein_coding	103	same	11648_ID	chr12	83415669	83415771	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
6465	ENST00000516669.1	ENST00000490508.5_1	chr2	85600576	85600637	RNU7-162P	-	snRNA	chr2	85581848	85618875	ELMOD3	+	processed_transcript	61	opposite	11734_ID	chr2	85600577	85600637	61	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
6466	ENST00000516671.1	ENST00000340510.8_1	chr7	39807939	39808043	RNU6-719P	+	snRNA	chr7	39773230	39832691	LINC00265	+	lncRNA	104	same	11448_ID	chr7	39807940	39808043	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
6519	ENST00000516825.1	ENST00000376980.8_4	chr10	22074220	22074516	RN7SKP219	+	misc_RNA	chr10	22045476	22292659	DNAJC1	-	protein_coding	296	opposite	9828_ID	chr10	22074221	22074516	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
6665	ENST00000517213.1	ENST00000377705.6_4	chr1	6600913	6601024	RNU6-731P	+	snRNA	chr1	6581406	6614573	NOL9	-	protein_coding	111	opposite	11460_ID	chr1	6600914	6601024	111	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
6670	ENST00000517223.1	ENST00000341048.9_4	chr5	55421497	55421597	RNU6-299P	+	snRNA	chr5	55395506	55529157	ANKRD55	-	protein_coding	100	opposite	11140_ID	chr5	55421498	55421597	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
6809	ENST00000520185.1_1	ENST00000522495.5_1	chr8	39771747	39773240	AC007991.2	+	lncRNA	chr8	39759893	39785945	IDO1	+	protein_coding	1493	same	675_ID	chr8	39771748	39773240	1493	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
6894	ENST00000522980.1_1	ENST00000615601.4_4	chr8	92988135	92989646	AF181450.1	+	lncRNA	chr8	92967194	93115454	RUNX1T1	-	protein_coding	1511	opposite	4400_ID	chr8	92988136	92989646	1511	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	11
6951	ENST00000525233.1_1	ENST00000354817.8_2	chr11	13690873	13691696	FAR1-IT1	+	lncRNA	chr11	13690214	13753893	FAR1	+	protein_coding	823	same	7001_ID	chr11	13690874	13691696	823	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
6952	ENST00000525330.1_3	ENST00000409195.6_5	chr2	167980413	167997465	XIRP2-AS1	-	lncRNA	chr2	167744989	168116263	XIRP2	+	protein_coding	17052	opposite	12922_ID	chr2	167980414	167997465	17052	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
6962	ENST00000525716.2_1	ENST00000265909.9_4	chr11	130736148	130740142	AP003486.1	-	lncRNA	chr11	130736144	130786374	SNX19	-	protein_coding	3994	same	6264_ID	chr11	130736149	130740142	3994	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
6963	ENST00000525893.1_3	ENST00000308020.6_2	chr11	462929	463899	AC138230.1	-	lncRNA	chr11	450278	491399	PTDSS2	+	protein_coding	970	opposite	4182_ID	chr11	462930	463899	970	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
6983	ENST00000526646.1_3	ENST00000534099.5_3	chr11	8056992	8061265	AC116456.1	-	lncRNA	chr11	8040790	8123327	TUB	+	protein_coding	4273	opposite	3910_ID	chr11	8056993	8061265	4273	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
6999	ENST00000526991.3_2	ENST00000334049.11_2	chr18	11851411	11854443	CHMP1B	+	protein_coding	chr18	11689262	11885684	GNAL	+	protein_coding	3032	same	6641_ID	chr18	11851412	11854443	3032	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
7026	ENST00000527818.1_1	ENST00000648911.1_4	chr11	125365109	125369424	AP000708.1	+	lncRNA	chr11	125312776	125462405	FEZ1	-	protein_coding	4315	opposite	6014_ID	chr11	125365110	125369424	4315	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
7084	ENST00000530028.3_3	ENST00000332408.9_4	chr15	49170330	49172370	EID1	+	protein_coding	chr15	49115937	49256116	SHC4	-	protein_coding	2040	opposite	6883_ID	chr15	49170331	49172370	2040	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
7090	ENST00000530190.1_3	ENST00000532485.6_2	chr11	76666460	76689663	AP002498.1	-	lncRNA	chr11	76571961	76737841	ACER3	+	protein_coding	100388	opposite	6191_ID	chr11	76666461	76689663	23203	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
7211	ENST00000534543.1_3	ENST00000263160.4_2	chr11	22382758	22383840	AC040936.1	-	lncRNA	chr11	22359926	22401049	SLC17A6	+	protein_coding	1082	opposite	2295_ID	chr11	22382759	22383840	1082	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
7246	ENST00000536986.5_3	ENST00000268624.7_3	chr16	84226163	84230659	AC009123.1	-	lncRNA	chr16	84224743	84230772	ADAD2	+	protein_coding	4496	opposite	892_ID	chr16	84226164	84230659	4496	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	11
7350	ENST00000543500.3_3	ENST00000371242.6_1	chr20	55933502	55934554	MTRNR2L3	-	protein_coding	chr20	55926278	55954267	RAE1	+	protein_coding	1052	opposite	9181_ID	chr20	55933503	55934554	1052	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
7376	ENST00000544674.1_3	ENST00000064780.7_2	chr11	73106603	73107481	AP000763.4	-	lncRNA	chr11	73087443	73108519	RELT	+	protein_coding	878	opposite	6024_ID	chr11	73106604	73107481	878	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
7388	ENST00000545410.1_1	ENST00000261192.12_5	chr12	24983354	24989492	AC023796.2	+	lncRNA	chr12	24962957	25102035	BCAT1	-	protein_coding	6138	opposite	1971_ID	chr12	24983355	24989492	6138	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	11
7414	ENST00000546615.1_3	ENST00000551631.7_3	chr15	25272882	25277194	AC124312.2	-	lncRNA	chr15	25224703	25281637	SNHG14	+	lncRNA	4312	opposite	4007_ID	chr15	25272883	25277194	4312	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	11	11
7419	ENST00000546770.1_1	ENST00000663261.1_3	chr12	74300719	74313117	AC136188.1	+	lncRNA	chr12	74214094	74796315	LINC02882	-	lncRNA	19468	opposite	4145_ID	chr12	74300720	74313117	12398	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
7426	ENST00000547009.1_3	ENST00000546604.5_3	chr12	56155333	56156412	AC073487.1	-	lncRNA	chr12	56146246	56211508	SARNP	-	nonsense_mediated_decay	1079	same	2527_ID	chr12	56155334	56156412	1079	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
7462	ENST00000548384.1_3	ENST00000261205.9_2	chr12	79354037	79439424	AC090709.1	-	lncRNA	chr12	79258553	79845788	SYT1	+	protein_coding	85387	opposite	2931_ID	chr12	79354038	79439424	85387	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
7472	ENST00000548738.1_3	ENST00000652555.1_1	chr12	117415246	117425142	AC127164.1	-	lncRNA	chr12	117348754	117468953	FBXW8	+	protein_coding	9896	opposite	4034_ID	chr12	117415247	117425142	9896	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	11
7482	ENST00000549140.2_3	ENST00000663261.1_3	chr12	74432803	74442643	LINC02394	+	lncRNA	chr12	74214094	74796315	LINC02882	-	lncRNA	10958	opposite	7769_ID	chr12	74432804	74442643	9840	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
7525	ENST00000551284.1_1	ENST00000341247.8_3	chr12	50613386	50623767	AC008147.1	+	lncRNA	chr12	50569570	50677329	LIMA1	-	protein_coding	10381	opposite	707_ID	chr12	50613387	50623767	10381	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
7535	ENST00000552046.1_3	ENST00000663261.1_3	chr12	74642416	74677449	AC090502.2	-	lncRNA	chr12	74214094	74796315	LINC02882	-	lncRNA	35033	same	2895_ID	chr12	74642417	74677449	35033	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
7544	ENST00000552441.1_3	ENST00000423955.7_2	chr12	52700399	52702155	AC121757.1	-	lncRNA	chr12	52668428	52702947	KRT86	+	protein_coding	1756	opposite	3977_ID	chr12	52700400	52702155	1756	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	11
7565	ENST00000553141.1_3	ENST00000258149.10_4	chr12	69235067	69237017	AC025423.4	-	lncRNA	chr12	69201956	69244466	MDM2	+	protein_coding	1950	opposite	2084_ID	chr12	69235068	69237017	1950	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
7619	ENST00000554679.1_3	ENST00000488612.5_2	chr14	68591720	68596913	AL133370.1	-	lncRNA	chr14	68286545	69196935	RAD51B	+	protein_coding	5193	opposite	4848_ID	chr14	68591721	68596913	5193	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
7629	ENST00000555108.1_3	ENST00000475087.5_1	chr14	31345384	31359014	AL049830.3	-	lncRNA	chr14	31343777	31364271	COCH	+	protein_coding	13630	opposite	4641_ID	chr14	31345385	31359014	13630	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
7671	ENST00000556301.1_3	ENST00000488612.5_2	chr14	69093882	69095162	AL121820.2	-	lncRNA	chr14	68286545	69196935	RAD51B	+	protein_coding	1280	opposite	4755_ID	chr14	69093883	69095162	1280	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
7690	ENST00000556919.1_3	ENST00000488612.5_2	chr14	69150127	69152282	AL121820.1	-	lncRNA	chr14	68286545	69196935	RAD51B	+	protein_coding	2155	opposite	4754_ID	chr14	69150128	69152282	2155	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
7702	ENST00000557322.1_1	ENST00000216455.9_2	chr14	58731379	58736399	AL132989.1	+	lncRNA	chr14	58711560	58738722	PSMA3	+	protein_coding	5020	same	4819_ID	chr14	58731380	58736399	5020	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	11
7753	ENST00000558424.1_3	ENST00000561302.5_1	chr15	76467231	76473827	AC091100.1	-	lncRNA	chr15	76352325	76521462	TMEM266	+	nonsense_mediated_decay	6596	opposite	2976_ID	chr15	76467232	76473827	6596	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	11
7792	ENST00000559435.1_6	ENST00000441369.6_4	chr15	40510700	40557091	BUB1B-PAK6	+	nonsense_mediated_decay	chr15	40509649	40568597	PAK6	+	protein_coding	46391	same	6441_ID	chr15	40510701	40557091	46391	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	11
7802	ENST00000559620.1_1	ENST00000332408.9_4	chr15	49230432	49240228	AC091073.1	+	lncRNA	chr15	49115937	49256116	SHC4	-	protein_coding	9796	opposite	2974_ID	chr15	49230433	49240228	9796	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
7823	ENST00000560057.1_1	ENST00000267973.7_6	chr15	78585627	78588391	AC090607.1	+	lncRNA	chr15	78575576	78591951	WDR61	-	protein_coding	2764	opposite	2918_ID	chr15	78585628	78588391	2764	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
7832	ENST00000560280.1_1	ENST00000335670.11_5	chr15	60822171	60837358	AC107241.1	+	lncRNA	chr15	60780482	61521501	RORA	-	protein_coding	15187	opposite	3687_ID	chr15	60822172	60837358	15187	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
7865	ENST00000561111.2_1	ENST00000271688.10_3	chr1	150937724	150938732	AL590133.2	+	lncRNA	chr1	150937648	150947479	CERS2	-	protein_coding	1012	opposite	5753_ID	chr1	150937725	150938732	1008	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
7913	ENST00000562280.1_3	ENST00000380962.9_1	chr16	25151897	25160353	LCMT1-AS2	-	lncRNA	chr16	25123051	25189552	LCMT1	+	nonsense_mediated_decay	8456	opposite	7516_ID	chr16	25151898	25160353	8456	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
8033	ENST00000564460.2_3	ENST00000545827.6_3	chr16	948966	955224	AL008727.1	-	lncRNA	chr16	903637	1031318	LMF1	-	nonsense_mediated_decay	6258	same	4432_ID	chr16	948967	955224	6258	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
8041	ENST00000564646.1_1	ENST00000268679.9_5	chr16	89003186	89006059	AC092384.3	-	lncRNA	chr16	88941265	89043615	CBFA2T3	-	protein_coding	2873	same	3090_ID	chr16	89003187	89006059	2873	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
8074	ENST00000565366.1_3	ENST00000566621.6_5	chr15	36933386	36961298	AC013640.1	-	lncRNA	chr15	36871826	37102445	CDIN1	+	protein_coding	27912	opposite	1456_ID	chr15	36933387	36961298	27912	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
8094	ENST00000565748.1_1	ENST00000325110.11_4	chr5	43287702	43289827	AC114947.2	+	lncRNA	chr5	43287571	43313514	HMGCS1	-	protein_coding	3239	opposite	3880_ID	chr5	43287703	43289827	2125	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
8189	ENST00000567544.1_3	ENST00000331006.12_1	chr16	89749027	89752977	LINC02166	-	lncRNA	chr16	89747144	89762761	CDK10	+	protein_coding	3950	opposite	7744_ID	chr16	89749028	89752977	3950	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
8247	ENST00000568809.1	ENST00000373004.5_3	chrX	99928326	99928978	RP11-524D16__A.3	+	antisense	chrX	99899195	99930785	SRPX2	+	protein_coding	652	same	11918_ID	chrX	99928327	99928978	652	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
8255	ENST00000569106.1_1	ENST00000545827.6_3	chr16	933779	935090	AL031716.1	+	lncRNA	chr16	903637	1031318	LMF1	-	nonsense_mediated_decay	1311	opposite	4551_ID	chr16	933780	935090	1311	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
8308	ENST00000570663.1_3	ENST00000311895.8_2	chr16	14024533	14029492	AC010401.1	-	lncRNA	chr16	14014010	14046205	ERCC4	+	protein_coding	4959	opposite	1072_ID	chr16	14024534	14029492	4959	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	11
8397	ENST00000575159.1	ENST00000393354.7_4	chr17	47249256	47250608	RP11-708H21.4	+	lincRNA	chr17	47210130	47254202	B4GALNT2	+	protein_coding	1352	same	11932_ID	chr17	47249257	47250608	1352	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
8398	ENST00000575404.1_1	ENST00000310924.7_6	chr17	77997692	77999906	AC116025.1	+	lncRNA	chr17	77906141	78009671	TBC1D16	-	protein_coding	2214	opposite	3891_ID	chr17	77997693	77999906	2214	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
8415	ENST00000576271.1_3	ENST00000317370.13_2	chr17	7186265	7187390	AC003688.2	-	lncRNA	chr17	7185036	7191576	SLC2A4	+	protein_coding	1125	opposite	87_ID	chr17	7186266	7187390	1125	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
8417	ENST00000576336.1_1	ENST00000543774.6_2	chr16	31129398	31130068	AC135050.5	+	lncRNA	chr16	31127074	31142714	KAT8	+	protein_coding	670	same	4134_ID	chr16	31129399	31130068	670	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
8427	ENST00000576632.1_3	ENST00000310924.7_6	chr17	77965742	77966640	AC116025.2	-	lncRNA	chr17	77906141	78009671	TBC1D16	-	protein_coding	898	same	3892_ID	chr17	77965743	77966640	898	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
8430	ENST00000576784.1_1	ENST00000575069.5_3	chr17	79801040	79801834	AC145207.3	+	lncRNA	chr17	79801036	79818442	P4HB	-	nonsense_mediated_decay	794	opposite	4232_ID	chr17	79801041	79801834	794	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
8436	ENST00000577173.1_1	ENST00000302451.9_4	chr16	20397278	20402486	AC106796.1	+	lncRNA	chr16	20370496	20416059	PDILT	-	protein_coding	5208	opposite	3650_ID	chr16	20397279	20402486	5208	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
8482	ENST00000577400.1	ENST00000417874.6_4	chr3	25810150	25810202	AC092798.1	-	miRNA	chr3	25760901	25831530	NGLY1	-	protein_coding	52	same	3149_ID	chr3	25810151	25810202	52	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
8527	ENST00000577655.1	ENST00000349320.7_3	chr1	25732721	25732780	AL031284.1	+	miRNA	chr1	25688802	25756683	RHCE	-	protein_coding	59	opposite	4515_ID	chr1	25732722	25732780	59	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
8530	ENST00000577670.1	ENST00000630790.1_1	chr15	93447628	93447705	MIR3175	+	miRNA	chr15	93429432	93492460	AC013394.1	+	retained_intron	77	same	8293_ID	chr15	93447629	93447705	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
8552	ENST00000577758.1	ENST00000643447.1_3	chr2	112528637	112528711	MIR4771-1	-	miRNA	chr2	112369215	112541920	ANAPC1	-	nonsense_mediated_decay	74	same	8759_ID	chr2	112528638	112528711	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
8572	ENST00000577845.1	ENST00000663261.1_3	chr12	74411554	74411636	AC090015.1	-	miRNA	chr12	74214094	74796315	LINC02882	-	lncRNA	82	same	2863_ID	chr12	74411555	74411636	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
8578	ENST00000577874.1	ENST00000395961.7_5	chr20	52684946	52685024	MIR4756	-	miRNA	chr20	52560079	52687133	BCAS1	-	protein_coding	78	same	8744_ID	chr20	52684947	52685024	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
8692	ENST00000578598.1	ENST00000398246.8_4	chr8	12584740	12584813	MIR3926-2	-	miRNA	chr8	12579414	12613035	LONRF1	-	protein_coding	73	same	8429_ID	chr8	12584741	12584813	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
8796	ENST00000579223.1	ENST00000402774.8_2	chr2	207647957	207648032	MIR3130-1	+	miRNA	chr2	207630329	207660913	FASTKD2	+	protein_coding	75	same	8253_ID	chr2	207647958	207648032	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
8815	ENST00000579352.1_3	ENST00000399134.5_2	chr17	18283168	18292298	AL353997.2	-	lncRNA	chr17	18281091	18292961	EVPLL	+	protein_coding	9130	opposite	5273_ID	chr17	18283169	18292298	9130	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	11
8819	ENST00000579394.1	ENST00000427177.6_4	chr17	75393065	75393136	MIR4316	-	miRNA	chr17	75277580	75496675	SEPTIN9	+	protein_coding	71	opposite	8509_ID	chr17	75393066	75393136	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
8852	ENST00000579551.1	ENST00000380615.8_4	chr13	30780752	30780836	AL356750.1	-	miRNA	chr13	30776766	30881688	KATNAL1	-	protein_coding	84	same	5398_ID	chr13	30780753	30780836	84	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
8860	ENST00000579595.1_1	ENST00000584307.5_3	chr18	738057	739444	AP001020.1	+	lncRNA	chr18	721587	812547	YES1	-	protein_coding	1387	opposite	6065_ID	chr18	738058	739444	1387	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
8918	ENST00000579914.1_1	ENST00000587182.2_1	chr17	10482356	10515888	AC005323.1	+	lncRNA	chr17	10286460	10527203	MYHAS	+	lncRNA	43997	same	274_ID	chr17	10482357	10515888	33532	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
8980	ENST00000580325.1	ENST00000641498.1_3	chr2	10332739	10332797	MIR4261	-	miRNA	chr2	10262865	10339414	RRM2	+	nonsense_mediated_decay	58	opposite	8462_ID	chr2	10332740	10332797	58	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
9006	ENST00000580431.1	ENST00000505143.5_1	chr5	96030234	96030335	AC020900.2	+	miRNA	chr5	95865524	96075822	CAST	+	protein_coding	101	same	1743_ID	chr5	96030235	96030335	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
9042	ENST00000580608.1	ENST00000498286.6_4	chr6	74186780	74186865	AL603910.1	+	miRNA	chr6	74171459	74218959	MTO1	+	protein_coding	85	same	5834_ID	chr6	74186781	74186865	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
9057	ENST00000580666.6_5	ENST00000448504.6_1	chr17	66263166	66287268	SLC16A6	-	protein_coding	chr17	66255322	66418872	ARSG	+	protein_coding	24242	opposite	12075_ID	chr17	66263167	66287268	24102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
9065	ENST00000580722.1	ENST00000568479.2_3	chrX	24535356	24535457	AC004656.1	-	miRNA	chrX	24483402	24568583	PDK3	+	protein_coding	101	opposite	149_ID	chrX	24535357	24535457	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
9068	ENST00000580742.1	ENST00000675478.1_1	chr3	114462291	114462372	MIR4796	-	miRNA	chr3	114033346	114866135	ZBTB20	-	protein_coding	81	same	8780_ID	chr3	114462292	114462372	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
9168	ENST00000581311.1	ENST00000569423.5_2	chr15	76187380	76187639	RN7SL510P	+	misc_RNA	chr15	76135647	76193385	UBE2Q2	+	protein_coding	259	same	10240_ID	chr15	76187381	76187639	259	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
9192	ENST00000581455.1	ENST00000648994.2_3	chr16	81418622	81418698	MIR4720	+	miRNA	chr16	81348566	81424414	GAN	+	protein_coding	76	same	8707_ID	chr16	81418623	81418698	76	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
9197	ENST00000581495.1	ENST00000264260.6_2	chr2	103048748	103048826	MIR4772	+	miRNA	chr2	103035148	103069025	IL18RAP	+	protein_coding	78	same	8760_ID	chr2	103048749	103048826	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
9226	ENST00000581712.1_1	ENST00000584307.5_3	chr18	738057	739662	AP001020.2	-	lncRNA	chr18	721587	812547	YES1	-	protein_coding	1605	same	6066_ID	chr18	738058	739662	1605	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
9279	ENST00000581942.1	ENST00000619387.5_2	chr17	35391041	35391110	MIR2909	+	miRNA	chr17	35306253	35414171	AATF	+	protein_coding	69	same	8213_ID	chr17	35391042	35391110	69	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
9291	ENST00000581987.1_1	ENST00000397968.4_3	chr18	63532497	63533633	AC023394.2	+	lncRNA	chr18	63418247	63557573	CDH7	+	protein_coding	1136	same	1947_ID	chr18	63532498	63533633	1136	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
9326	ENST00000582203.1	ENST00000519273.6_1	chr20	61918159	61918218	MIR4326	+	miRNA	chr20	61904136	61921141	ARFGAP1	+	protein_coding	59	same	8520_ID	chr20	61918160	61918218	59	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
9336	ENST00000582238.1	ENST00000394071.6_6	chr14	74225449	74225522	MIR4505	+	miRNA	chr14	74181824	74253961	MIDEAS	-	protein_coding	73	opposite	8586_ID	chr14	74225450	74225522	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
9372	ENST00000582405.1	ENST00000284268.8_5	chr5	14826037	14826121	MIR4637	-	miRNA	chr5	14704908	14871887	ANKH	-	protein_coding	84	same	8623_ID	chr5	14826038	14826121	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
9389	ENST00000582572.1	ENST00000368990.7_3	chr10	124176480	124176583	MIR3941	+	miRNA	chr10	124134211	124202118	PLEKHA1	+	protein_coding	103	same	8438_ID	chr10	124176481	124176583	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
9457	ENST00000582895.1_1	ENST00000602730.1_1	chr17	16707940	16709021	AC022596.1	+	lncRNA	chr17	16691370	16719854	AC098850.4	+	lncRNA	1081	same	1892_ID	chr17	16707941	16709021	1081	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	7	11
9608	ENST00000583739.1	ENST00000536438.5_3	chr6	35632493	35632566	MIR5690	-	miRNA	chr6	35541361	35696360	FKBP5	-	protein_coding	73	same	8962_ID	chr6	35632494	35632566	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
9712	ENST00000584315.1	ENST00000664495.1_1	chr1	61549126	61549202	AC096534.1	-	miRNA	chr1	61331003	61923683	NFIA	+	nonsense_mediated_decay	76	opposite	3268_ID	chr1	61549127	61549202	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
9717	ENST00000584344.1	ENST00000316937.8_4	chr7	99754227	99754292	MIR4658	-	miRNA	chr7	99752045	99756346	MAP11	-	protein_coding	65	same	8648_ID	chr7	99754228	99754292	65	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	11
9735	ENST00000584466.1	ENST00000368099.9_4	chr1	159869768	159869869	hsa-mir-4259	-	miRNA	chr1	159842153	159869955	CFAP45	-	protein_coding	101	same	7299_ID	chr1	159869769	159869869	101	*	-	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
9760	ENST00000584576.1	ENST00000256413.8_5	chr18	46196970	46197039	MIR4743	+	miRNA	chr18	46065401	46389588	CTIF	+	protein_coding	69	same	8730_ID	chr18	46196971	46197039	69	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
9800	ENST00000584846.1	ENST00000335875.9_5	chr19	49812053	49812125	MIR4324	-	miRNA	chr19	49792894	49828448	SLC6A16	-	protein_coding	72	same	8519_ID	chr19	49812054	49812125	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
9819	ENST00000584952.1_1	ENST00000427497.3_3	chr17	17138746	17139432	AC055811.3	-	lncRNA	chr17	17105962	17140499	AC055811.2	-	nonsense_mediated_decay	686	same	2337_ID	chr17	17138747	17139432	686	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
9877	ENST00000585238.1	ENST00000382451.6_3	chr4	10080234	10080316	MIR3138	-	miRNA	chr4	10075963	10118573	WDR1	-	protein_coding	82	same	8263_ID	chr4	10080235	10080316	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
9895	ENST00000585369.1_1	ENST00000427177.6_4	chr17	75465149	75467127	AC111170.2	+	lncRNA	chr17	75277580	75496675	SEPTIN9	+	protein_coding	1978	same	3807_ID	chr17	75465150	75467127	1978	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
9904	ENST00000585537.1_3	ENST00000590474.7_3	chr17	67473279	67497896	AC002546.1	-	lncRNA	chr17	67410837	67550006	MAP2K6	+	protein_coding	24617	opposite	65_ID	chr17	67473280	67497896	24617	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
9938	ENST00000586453.1_3	ENST00000334049.11_2	chr18	11810404	11811483	AP005137.1	-	lncRNA	chr18	11689262	11885684	GNAL	+	protein_coding	1079	opposite	6292_ID	chr18	11810405	11811483	1079	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
9940	ENST00000586474.1_3	ENST00000334049.11_2	chr18	11851412	11852750	CHMP1B-AS1	-	lncRNA	chr18	11689262	11885684	GNAL	+	protein_coding	1338	opposite	6643_ID	chr18	11851413	11852750	1338	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
9942	ENST00000586503.1_1	ENST00000316757.4_4	chr19	3753837	3756515	AC005954.2	+	lncRNA	chr19	3750769	3761690	APBA3	-	protein_coding	2678	opposite	389_ID	chr19	3753838	3756515	2678	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
9950	ENST00000586841.1_1	ENST00000649564.1_4	chr18	57230940	57235847	AC090213.1	+	lncRNA	chr18	57098170	57364894	CCBE1	-	protein_coding	4907	opposite	2882_ID	chr18	57230941	57235847	4907	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
9994	ENST00000588192.1_1	ENST00000252674.9_5	chr19	6259167	6259810	AC011471.2	+	lncRNA	chr19	6210391	6279986	MLLT1	-	protein_coding	643	opposite	1233_ID	chr19	6259168	6259810	643	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
9998	ENST00000588298.1_1	ENST00000649564.1_4	chr18	57353051	57355632	AC010776.1	+	lncRNA	chr18	57098170	57364894	CCBE1	-	protein_coding	2581	opposite	1147_ID	chr18	57353052	57355632	2581	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
10009	ENST00000588687.5_3	ENST00000472403.5_3	chr17	42750436	42767093	CCDC43	-	protein_coding	chr17	42745589	42767676	MEIOC	+	nonsense_mediated_decay	16711	opposite	6575_ID	chr17	42750437	42767093	16657	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	11
10011	ENST00000588701.1_1	ENST00000427177.6_4	chr17	75369899	75373318	AC111182.1	-	lncRNA	chr17	75277580	75496675	SEPTIN9	+	protein_coding	3419	opposite	3808_ID	chr17	75369900	75373318	3419	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
10014	ENST00000588798.1_1	ENST00000301281.11_5	chr19	4447300	4448214	AC011498.2	+	lncRNA	chr19	4445002	4457791	UBXN6	-	protein_coding	914	opposite	1254_ID	chr19	4447301	4448214	914	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	11
10022	ENST00000589242.1_1	ENST00000649564.1_4	chr18	57126303	57132914	AC016229.1	+	lncRNA	chr18	57098170	57364894	CCBE1	-	protein_coding	6611	opposite	1523_ID	chr18	57126304	57132914	6611	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
10035	ENST00000589818.1_3	ENST00000256413.8_5	chr18	46199945	46214790	AC048380.1	-	lncRNA	chr18	46065401	46389588	CTIF	+	protein_coding	14845	opposite	2312_ID	chr18	46199946	46214790	14845	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
10066	ENST00000590649.1_3	ENST00000256413.8_5	chr18	46352421	46361141	AC093567.1	-	lncRNA	chr18	46065401	46389588	CTIF	+	protein_coding	8720	opposite	3220_ID	chr18	46352422	46361141	8720	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
10068	ENST00000590850.1_1	ENST00000262291.9_2	chr17	57862173	57862396	AC040904.1	+	lncRNA	chr17	57785014	57919616	VMP1	+	protein_coding	223	same	2293_ID	chr17	57862174	57862396	223	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
10074	ENST00000591091.1_3	ENST00000591613.2_1	chr19	36238125	36244316	AD000671.3	-	lncRNA	chr19	36236578	36245420	AD000671.1	+	nonsense_mediated_decay	6359	opposite	4345_ID	chr19	36238126	36244316	6191	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	11
10079	ENST00000591110.1_3	ENST00000427177.6_4	chr17	75465243	75468852	AC111170.1	-	lncRNA	chr17	75277580	75496675	SEPTIN9	+	protein_coding	3609	opposite	3806_ID	chr17	75465244	75468852	3609	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
10093	ENST00000591628.1_1	ENST00000472403.5_3	chr17	42751056	42753625	AC091152.2	-	lncRNA	chr17	42745589	42767676	MEIOC	+	nonsense_mediated_decay	2569	opposite	2985_ID	chr17	42751057	42753625	2569	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
10105	ENST00000592034.1_1	ENST00000301281.11_5	chr19	4454010	4455283	AC011498.6	+	lncRNA	chr19	4445002	4457791	UBXN6	-	protein_coding	1273	opposite	1256_ID	chr19	4454011	4455283	1273	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
10106	ENST00000592252.1_1	ENST00000450554.6_2	chr19	56181997	56183435	AC008735.1	+	lncRNA	chr19	56165511	56186081	U2AF2	+	protein_coding	1438	same	787_ID	chr19	56181998	56183435	1438	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
10115	ENST00000592465.1_3	ENST00000649556.1_3	chr16	4845265	4846533	AC020663.2	-	lncRNA	chr16	4827939	4851424	AC020663.4	-	lncRNA	1268	same	1727_ID	chr16	4845266	4846533	1268	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
10130	ENST00000592929.1_3	ENST00000360315.7_2	chr19	19512787	19513412	AC092067.1	-	lncRNA	chr19	19496641	19619740	GATAD2A	+	protein_coding	625	opposite	3035_ID	chr19	19512788	19513412	625	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
10140	ENST00000593177.1_1	ENST00000678938.1_1	chr17	43059881	43060140	AC015936.2	+	lncRNA	chr17	43035359	43186357	NMT1	+	protein_coding	259	same	1509_ID	chr17	43059882	43060140	259	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
10153	ENST00000593779.1_1	ENST00000409035.1_3	chr19	16697715	16698796	AC008764.7	-	lncRNA	chr19	16589877	16739015	AC008764.1	-	nonsense_mediated_decay	1081	same	812_ID	chr19	16697716	16698796	1081	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
10192	ENST00000595201.2_4	ENST00000517510.5_3	chr19	48707327	48718008	AC011466.1	+	lncRNA	chr19	48706888	48759155	CARD8	-	nonsense_mediated_decay	10681	opposite	1226_ID	chr19	48707328	48718008	10681	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	11
10195	ENST00000595301.1_1	ENST00000637233.1_1	chr19	58778000	58779051	AC020915.1	+	lncRNA	chr19	58740279	58826549	AC020915.4	+	nonsense_mediated_decay	44368	same	1757_ID	chr19	58778001	58779051	1051	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
10197	ENST00000595468.1	ENST00000356577.10_7	chr21	34947430	34947645	AP000304.1	-	protein_coding	chr21	34915343	34949787	SON	+	protein_coding	215	opposite	5973_ID	chr21	34947431	34947645	215	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
10202	ENST00000595655.1_3	ENST00000397981.7_1	chr19	7977532	7978403	AC010336.4	-	lncRNA	chr19	7968727	7979363	MAP2K7	+	protein_coding	871	opposite	1068_ID	chr19	7977533	7978403	871	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
10220	ENST00000596131.1	ENST00000373710.5_2	chr1	31902191	31902614	AC114494.1	-	protein_coding	chr1	31882411	31907524	SERINC2	+	protein_coding	423	opposite	3866_ID	chr1	31902192	31902614	423	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	11
10234	ENST00000596487.1	ENST00000409035.1_3	chr19	16653433	16655625	CTD-3222D19.7	-	lincRNA	chr19	16589877	16739015	AC008764.1	-	nonsense_mediated_decay	2192	same	6740_ID	chr19	16653434	16655625	2192	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
10243	ENST00000596731.7_6	ENST00000418543.8_2	chr19	12778886	12780229	WDR83OS	-	protein_coding	chr19	12777620	12786646	WDR83	+	protein_coding	1343	opposite	12909_ID	chr19	12778887	12780229	1343	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	11
10255	ENST00000596964.1_3	ENST00000638827.1_3	chr19	52343023	52344198	AC006272.1	-	lncRNA	chr19	52308068	52391227	ZNF577	-	nonsense_mediated_decay	1175	same	449_ID	chr19	52343024	52344198	1175	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	11
10263	ENST00000597110.1_1	ENST00000341773.10_2	chr19	35821745	35822823	U62631.1	+	lncRNA	chr19	35820071	35838258	CD22	+	protein_coding	1078	same	12832_ID	chr19	35821746	35822823	1078	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
10269	ENST00000597230.2_3	ENST00000637233.1_1	chr19	58768635	58790174	AC020915.2	-	lncRNA	chr19	58740279	58826549	AC020915.4	+	nonsense_mediated_decay	21539	opposite	1758_ID	chr19	58768636	58790174	21539	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
10274	ENST00000597357.1_1	ENST00000409035.1_3	chr19	16662583	16663139	AC008764.3	+	lncRNA	chr19	16589877	16739015	AC008764.1	-	nonsense_mediated_decay	556	opposite	808_ID	chr19	16662584	16663139	556	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
10288	ENST00000597851.1_1	ENST00000409035.1_3	chr19	16676361	16677141	AC008764.5	+	lncRNA	chr19	16589877	16739015	AC008764.1	-	nonsense_mediated_decay	780	opposite	809_ID	chr19	16676362	16677141	780	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
10324	ENST00000598893.1_1	ENST00000448593.6_3	chr19	17162803	17165897	AC020908.1	+	lncRNA	chr19	17160570	17186435	HAUS8	-	protein_coding	3094	opposite	1746_ID	chr19	17162804	17165897	3094	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	11
10359	ENST00000599952.1_1	ENST00000599109.5_3	chr19	58869364	58870969	AC012313.2	+	lncRNA	chr19	58859831	58874117	AC012313.3	-	lncRNA	1605	opposite	1360_ID	chr19	58869365	58870969	1605	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
10377	ENST00000600669.1_1	ENST00000313777.9_5	chr19	50312189	50312995	AC006942.1	+	lncRNA	chr19	50310122	50316549	FUZ	-	protein_coding	806	opposite	488_ID	chr19	50312190	50312995	806	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	11
10379	ENST00000600694.1_4	ENST00000418543.8_2	chr19	12780892	12781837	AC010422.7	-	lncRNA	chr19	12777620	12786646	WDR83	+	protein_coding	945	opposite	1077_ID	chr19	12780893	12781837	945	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	11
10410	ENST00000601484.2_1	ENST00000294168.8_2	chr11	62553494	62554257	AP001160.3	-	lncRNA	chr11	62538867	62554814	TAF6L	+	protein_coding	763	opposite	6102_ID	chr11	62553495	62554257	763	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	11
10420	ENST00000601906.2_1	ENST00000316059.7_2	chr11	58378591	58380115	AP001350.1	-	lncRNA	chr11	58346535	58389023	ZFP91	+	protein_coding	1524	opposite	6121_ID	chr11	58378592	58380115	1524	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	11
10445	ENST00000602369.3_3	ENST00000402114.6_3	chr2	48859429	48982863	AC073082.1	-	nonsense_mediated_decay	chr2	48757063	49003656	STON1-GTF2A1L	+	protein_coding	123434	opposite	2502_ID	chr2	48859430	48982863	123434	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	11
10494	ENST00000602749.1_1	ENST00000264220.6_4	chr4	57262477	57263037	AC068620.2	+	lncRNA	chr4	57259527	57301781	PPAT	-	protein_coding	560	opposite	2426_ID	chr4	57262478	57263037	560	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	11
10508	ENST00000602835.1_1	ENST00000446859.7_5	chr3	169512749	169514001	AC078795.2	+	lncRNA	chr3	169510790	169530692	LRRC34	-	protein_coding	1252	opposite	2586_ID	chr3	169512750	169514001	1252	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	11
10521	ENST00000602913.1_1	ENST00000446859.7_5	chr3	169511282	169511754	AC078795.3	+	lncRNA	chr3	169510790	169530692	LRRC34	-	protein_coding	472	opposite	2587_ID	chr3	169511283	169511754	472	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	11
10588	ENST00000604228.1_3	ENST00000628018.2_2	chr19	36634982	36639250	AD001527.1	-	lncRNA	chr19	36630916	36641255	CAPNS1	+	protein_coding	4268	opposite	4346_ID	chr19	36634983	36639250	4268	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	11
10602	ENST00000604666.1_1	ENST00000427521.6_2	chr7	130135634	130138268	AC007938.2	-	lncRNA	chr7	130126176	130146306	MEST	+	protein_coding	2634	opposite	669_ID	chr7	130135635	130138268	2634	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
10630	ENST00000605385.1_3	ENST00000398761.8_3	chr10	74227506	74233062	AC091769.1	-	lncRNA	chr10	74127084	74385949	MICU1	-	protein_coding	5556	same	3012_ID	chr10	74227507	74233062	5556	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
10632	ENST00000605499.1_3	ENST00000374706.5_1	chr10	35604259	35625329	AL117336.2	-	lncRNA	chr10	35535952	35860852	CCNY	+	protein_coding	21850	opposite	4725_ID	chr10	35604260	35625329	21070	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
10657	ENST00000605980.1_3	ENST00000558331.5_2	chr19	8287036	8304532	AC022146.2	-	lncRNA	chr19	8274196	8327305	CERS4	+	protein_coding	17496	opposite	1828_ID	chr19	8287037	8304532	17496	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
10723	ENST00000606593.1_1	ENST00000379957.9_3	chr8	38265565	38266260	AC087623.3	-	lncRNA	chr8	38243993	38267045	LETM2	+	protein_coding	695	opposite	2838_ID	chr8	38265566	38266260	695	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	11
10733	ENST00000606686.1_3	ENST00000660355.1_3	chr6	147269663	147272295	AL138916.2	-	lncRNA	chr6	147163049	147525691	STXBP5-AS1	-	lncRNA	2632	same	4983_ID	chr6	147269664	147272295	2632	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
10739	ENST00000606769.1	ENST00000216554.8_2	chr14	103804185	103804311	SNORA28	+	snoRNA	chr14	103800573	103811362	EIF5	+	protein_coding	126	same	12164_ID	chr14	103804186	103804311	126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
10778	ENST00000607145.1_2	ENST00000400897.8_4	chr1	11089715	11090585	AL109811.2	+	lncRNA	chr1	11086579	11107296	MASP2	-	protein_coding	870	opposite	4707_ID	chr1	11089716	11090585	870	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	11
10828	ENST00000607549.1_1	ENST00000382824.5_3	chr8	400713	401343	AC083964.1	-	lncRNA	chr8	356954	427967	FBXO25	+	protein_coding	630	opposite	2726_ID	chr8	400714	401343	630	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	11
10853	ENST00000607783.1_1	ENST00000288167.8_2	chr3	53893020	53895603	AC012467.2	-	lncRNA	chr3	53880594	53899821	IL17RB	+	protein_coding	2583	opposite	1392_ID	chr3	53893021	53895603	2583	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	11
10867	ENST00000607934.1_1	ENST00000263202.15_4	chr22	19441701	19442128	AC000068.3	+	lncRNA	chr22	19437433	19466716	UFD1	-	protein_coding	427	opposite	21_ID	chr22	19441702	19442128	427	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
10934	ENST00000608677.1_1	ENST00000615189.5_3	chr22	30816500	30816901	AC004832.5	+	lncRNA	chr22	30793006	30821291	SEC14L2	+	protein_coding	401	same	179_ID	chr22	30816501	30816901	401	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
10959	ENST00000608952.1_1	ENST00000615189.5_3	chr22	30817194	30817525	AC004832.4	-	lncRNA	chr22	30793006	30821291	SEC14L2	+	protein_coding	331	opposite	177_ID	chr22	30817195	30817525	331	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
10985	ENST00000609238.1_2	ENST00000334049.11_2	chr18	11857153	11857553	AP005137.2	-	lncRNA	chr18	11689262	11885684	GNAL	+	protein_coding	400	opposite	6293_ID	chr18	11857154	11857553	400	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
11020	ENST00000609664.2_4	ENST00000323084.9_7	chr21	46020496	46022091	KRTAP10-7	+	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	1595	opposite	7486_ID	chr21	46020497	46022091	1595	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
11074	ENST00000610120.1_3	ENST00000397195.10_2	chr17	2586598	2588382	AC005696.2	-	lncRNA	chr17	2496947	2588909	PAFAH1B1	+	protein_coding	1784	opposite	331_ID	chr17	2586599	2588382	1784	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	11	11
11076	ENST00000610137.1_1	ENST00000490508.5_1	chr2	85614196	85614269	AC062037.2	-	lncRNA	chr2	85581848	85618875	ELMOD3	+	processed_transcript	73	opposite	2348_ID	chr2	85614197	85614269	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
11113	ENST00000610701.1_1	ENST00000593068.7_5	chr19	1010219	1010906	AC004528.2	+	lncRNA	chr19	1009646	1021178	TMEM259	-	nonsense_mediated_decay	687	opposite	136_ID	chr19	1010220	1010906	687	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	11
11117	ENST00000610813.1_1	ENST00000543774.6_2	chr16	31133555	31135274	AC135050.6	+	lncRNA	chr16	31127074	31142714	KAT8	+	protein_coding	1830	same	4135_ID	chr16	31133556	31135274	1719	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
11119	ENST00000610917.1_1	ENST00000536681.8_2	chr12	29485665	29486316	AC009318.2	-	lncRNA	chr12	29302210	29488549	FAR2	+	protein_coding	651	opposite	947_ID	chr12	29485666	29486316	651	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
11208	ENST00000613236.1_1	ENST00000454402.7_2	chr12	118462621	118463323	AC131159.2	-	lncRNA	chr12	118454507	118470039	RFC5	+	protein_coding	702	opposite	4084_ID	chr12	118462622	118463323	702	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	11
11213	ENST00000613270.1_1	ENST00000619387.5_2	chr17	35337465	35337721	AC243773.2	+	lncRNA	chr17	35306253	35414171	AATF	+	protein_coding	256	same	4284_ID	chr17	35337466	35337721	256	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
11230	ENST00000613686.1_1	ENST00000537259.5_5	chr15	65947957	65948423	AC011939.3	-	lncRNA	chr15	65903742	65953333	SLC24A1	+	protein_coding	466	opposite	1314_ID	chr15	65947958	65948423	466	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
11293	ENST00000615146.1_1	ENST00000262032.9_2	chr12	56403874	56404358	AC034102.8	-	lncRNA	chr12	56401442	56432219	IKZF4	+	protein_coding	484	opposite	2248_ID	chr12	56403875	56404358	484	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
11300	ENST00000615419.1_1	ENST00000619387.5_2	chr17	35391964	35400550	AC244093.3	+	lncRNA	chr17	35306253	35414171	AATF	+	protein_coding	8586	same	4285_ID	chr17	35391965	35400550	8586	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
11369	ENST00000616916.1_1	ENST00000536681.8_2	chr12	29484366	29484869	AC009318.3	-	lncRNA	chr12	29302210	29488549	FAR2	+	protein_coding	503	opposite	948_ID	chr12	29484367	29484869	503	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
11373	ENST00000617058.1_2	ENST00000337195.9_3	chr10	126684632	126690060	AL731571.1	+	lncRNA	chr10	126672885	126849082	CTBP2	-	protein_coding	5428	opposite	5899_ID	chr10	126684633	126690060	5428	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	11
11398	ENST00000617703.1_1	ENST00000217159.6_3	chr20	61280312	61282119	AL357033.4	-	lncRNA	chr20	61273854	61303645	SLCO4A1	+	protein_coding	1807	opposite	5408_ID	chr20	61280313	61282119	1807	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
11401	ENST00000617795.1_1	ENST00000652555.1_1	chr12	117386542	117389227	AC083806.2	-	lncRNA	chr12	117348754	117468953	FBXW8	+	protein_coding	2685	opposite	2711_ID	chr12	117386543	117389227	2685	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
11417	ENST00000618290.1_1	ENST00000261381.7_4	chr16	17539681	17540237	AC009152.1	-	lncRNA	chr16	17195625	17564817	XYLT1	-	protein_coding	556	same	910_ID	chr16	17539682	17540237	556	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
11427	ENST00000618739.1_1	ENST00000324262.9_2	chr18	72172000	72172483	AC009704.2	+	lncRNA	chr18	72163597	72190689	CNDP2	+	protein_coding	483	same	989_ID	chr18	72172001	72172483	483	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
11464	ENST00000619568.1_1	ENST00000367070.8_2	chr1	207300354	207300831	AL445493.3	-	lncRNA	chr1	207277577	207318317	C4BPA	+	protein_coding	477	opposite	5629_ID	chr1	207300355	207300831	477	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
11467	ENST00000619606.2_4	ENST00000619387.5_2	chr17	35402525	35410190	AC244093.5	-	lncRNA	chr17	35306253	35414171	AATF	+	protein_coding	7665	opposite	4287_ID	chr17	35402526	35410190	7665	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
11497	ENST00000620075.1_1	ENST00000545827.6_3	chr16	1018374	1019012	AC009041.3	-	lncRNA	chr16	903637	1031318	LMF1	-	nonsense_mediated_decay	638	same	847_ID	chr16	1018375	1019012	638	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
11501	ENST00000620143.1_3	ENST00000217159.6_3	chr20	61282623	61283538	AL357033.3	-	lncRNA	chr20	61273854	61303645	SLCO4A1	+	protein_coding	915	opposite	5407_ID	chr20	61282624	61283538	915	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
11518	ENST00000620490.1_1	ENST00000369023.8_4	chr10	123725278	123727215	AL731566.2	+	lncRNA	chr10	123716605	123734732	NSMCE4A	-	protein_coding	1937	opposite	5897_ID	chr10	123725279	123727215	1937	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
11519	ENST00000620496.1_1	ENST00000536681.8_2	chr12	29430329	29430815	AC009318.4	-	lncRNA	chr12	29302210	29488549	FAR2	+	protein_coding	486	opposite	949_ID	chr12	29430330	29430815	486	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
11524	ENST00000620523.1_1	ENST00000621426.6_4	chr20	31097761	31108088	AL034550.2	+	lncRNA	chr20	31030864	31172692	NOL4L	-	protein_coding	10327	opposite	4592_ID	chr20	31097762	31108088	10327	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
11527	ENST00000620689.1_1	ENST00000619387.5_2	chr17	35355896	35357333	AC244093.4	+	lncRNA	chr17	35306253	35414171	AATF	+	protein_coding	1437	same	4286_ID	chr17	35355897	35357333	1437	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
11542	ENST00000621019.2_1	ENST00000360689.9_1	chr14	65877887	65879408	FUT8-AS1	-	lncRNA	chr14	65877309	66210839	FUT8	+	protein_coding	1521	opposite	7091_ID	chr14	65877888	65879408	1521	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	11
11552	ENST00000621300.1_1	ENST00000536681.8_2	chr12	29309380	29309924	AC012150.2	-	lncRNA	chr12	29302210	29488549	FAR2	+	protein_coding	544	opposite	1336_ID	chr12	29309381	29309924	544	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
11576	ENST00000621705.1_2	ENST00000547848.5_4	chr14	20006912	20010958	AL512624.2	+	lncRNA	chr14	19988415	20020272	POTEG	-	protein_coding	4046	opposite	5688_ID	chr14	20006913	20010958	4046	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	11
11592	ENST00000621925.1_1	ENST00000675287.1_1	chr15	34264259	34264716	AC009268.2	-	lncRNA	chr15	34150982	34367356	AVEN	-	processed_transcript	457	same	931_ID	chr15	34264260	34264716	457	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
11612	ENST00000622352.3_4	ENST00000323084.9_7	chr21	45993600	46058201	KRTAP10-4	+	protein_coding	chr21	45917775	46131487	TSPEAR	-	protein_coding	64601	opposite	7480_ID	chr21	45993601	46058201	64601	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
11616	ENST00000622395.4_3	ENST00000495483.5_2	chr1	161141100	161147758	B4GALT3	-	protein_coding	chr1	161136269	161147803	PPOX	+	nonsense_mediated_decay	6659	opposite	6390_ID	chr1	161141101	161147758	6658	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	11
11634	ENST00000622881.1_1	ENST00000602402.6_2	chr13	96396979	96398019	AL138955.1	+	lncRNA	chr13	96329392	96447242	DNAJC3	+	protein_coding	1040	same	4988_ID	chr13	96396980	96398019	1040	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
11708	ENST00000624879.1_1	ENST00000376980.8_4	chr10	22154263	22154850	AL359697.1	-	lncRNA	chr10	22045476	22292659	DNAJC1	-	protein_coding	587	same	5495_ID	chr10	22154264	22154850	587	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
11719	ENST00000624980.1_1	ENST00000337014.10_4	chr17	80383373	80385186	HEXD-IT1	+	lncRNA	chr17	80376193	80400521	HEXD	+	protein_coding	1813	same	7229_ID	chr17	80383374	80385186	1813	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
11754	ENST00000627539.2_7	ENST00000265717.5_2	chr7	106708983	106774109	PRKAR2B-AS1	-	lncRNA	chr7	106685149	106802256	PRKAR2B	+	protein_coding	67143	opposite	9635_ID	chr7	106708984	106774109	65126	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
11824	ENST00000634334.1_1	ENST00000441595.2_5	chr10	28592228	28596587	MPP7-DT	+	lncRNA	chr10	28343071	28623415	MPP7	-	protein_coding	4359	opposite	9155_ID	chr10	28592229	28596587	4359	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
11874	ENST00000637427.1_3	ENST00000278353.10_4	chr11	43877462	43877954	AC087521.4	-	lncRNA	chr11	43702287	43878165	HSD17B12	+	protein_coding	492	opposite	2832_ID	chr11	43877463	43877954	492	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	11
11887	ENST00000637940.2_2	ENST00000336648.8_3	chr21	38338784	38347464	AP000704.1	+	lncRNA	chr21	38123188	38362536	HLCS	-	protein_coding	8704	opposite	6013_ID	chr21	38338785	38347464	8680	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
11909	ENST00000640310.2_3	ENST00000311604.8_4	chr11	1909307	1913125	PRR33	-	protein_coding	chr11	1874313	1913493	LSP1	+	protein_coding	3818	opposite	9654_ID	chr11	1909308	1913125	3818	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	11
11926	ENST00000641183.1_4	ENST00000460241.2_4	chr3	46783581	46854048	AC109583.4	-	lncRNA	chr3	46753604	46854064	AC109583.1	-	protein_coding	70467	same	3773_ID	chr3	46783582	46854048	70467	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	11
12003	ENST00000646129.1_3	ENST00000508064.7_2	chr1	207882368	207884853	AL137789.2	-	lncRNA	chr1	207818477	207897048	CR1L	+	protein_coding	2485	opposite	4957_ID	chr1	207882369	207884853	2485	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
12012	ENST00000647248.2_3	ENST00000265239.11_4	chr3	197677060	197683481	RPL35A	+	protein_coding	chr3	197615947	197686862	IQCG	-	protein_coding	6421	opposite	11954_ID	chr3	197677061	197683481	6421	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
12038	ENST00000648074.1_1	ENST00000261381.7_4	chr16	17547326	17550093	AC009152.3	+	lncRNA	chr16	17195625	17564817	XYLT1	-	protein_coding	2767	opposite	911_ID	chr16	17547327	17550093	2767	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
12052	ENST00000648249.1_3	ENST00000641815.1_1	chr11	59520050	59522191	AP000640.1	-	lncRNA	chr11	59480928	59570181	STX3	+	protein_coding	2398	opposite	6005_ID	chr11	59520051	59522191	2141	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
12097	ENST00000648749.1_1	ENST00000646266.1_2	chr1	56333926	56415791	LINC01755	+	lncRNA	chr1	56289488	56536186	AL603840.1	+	lncRNA	81866	same	7673_ID	chr1	56333927	56415791	81865	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
12175	ENST00000650343.1_3	ENST00000647319.1_1	chr15	70113094	70127450	AC021818.1	-	lncRNA	chr15	69921122	70133167	DRAIC	+	lncRNA	49697	opposite	1806_ID	chr15	70113095	70127450	14356	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
12196	ENST00000650890.1_3	ENST00000409707.5_1	chr2	74061548	74084092	AC073046.3	-	lncRNA	chr2	74056088	74100760	STAMBP	+	protein_coding	22544	opposite	2500_ID	chr2	74061549	74084092	22544	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
12220	ENST00000651205.1_1	ENST00000267257.11_4	chr12	120655872	120660471	AC004263.2	+	lncRNA	chr12	120648241	120703574	PXN	-	protein_coding	4599	opposite	123_ID	chr12	120655873	120660471	4599	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	11
12228	ENST00000651426.1_3	ENST00000456265.1_3	chr20	12915524	12917745	AL078623.1	-	lncRNA	chr20	12845849	12933167	LINC01722	-	lncRNA	2221	same	4670_ID	chr20	12915525	12917745	2221	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
12238	ENST00000651729.1_3	ENST00000650700.1_1	chr4	53578879	53588544	AC104066.4	-	lncRNA	chr4	53578560	53732988	LINC01618	+	lncRNA	9665	opposite	3505_ID	chr4	53578880	53588544	9665	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
12241	ENST00000651757.1_3	ENST00000561912.3_3	chr6	22287478	22303038	PRL	-	protein_coding	chr6	22147100	22368579	CASC15	+	lncRNA	15583	opposite	9641_ID	chr6	22287479	22303038	15560	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	11
12254	ENST00000652130.1_1	ENST00000314830.13_5	chr9	130516812	130522839	AL162586.2	+	lncRNA	chr9	130500595	130540945	SH2D3C	-	protein_coding	6027	opposite	5210_ID	chr9	130516813	130522839	6027	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
12369	ENST00000654896.1_1	ENST00000284268.8_5	chr5	14728695	14734367	AC010491.2	+	lncRNA	chr5	14704908	14871887	ANKH	-	protein_coding	5672	opposite	1084_ID	chr5	14728696	14734367	5672	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
12419	ENST00000655882.1_1	ENST00000240617.10_4	chr12	14683057	14696509	AC008114.1	+	lncRNA	chr12	14656594	14720817	PLBD1	-	protein_coding	13452	opposite	700_ID	chr12	14683058	14696509	13452	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
12427	ENST00000656002.1_3	ENST00000380448.5_2	chr10	5257370	5258977	AL355303.2	-	lncRNA	chr10	5237425	5260912	AKR1C4	+	protein_coding	1607	opposite	5325_ID	chr10	5257371	5258977	1607	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	11
12511	ENST00000657704.1_1	ENST00000297107.11_2	chr5	153725601	153727394	AC008625.1	+	lncRNA	chr5	153570292	153800544	GALNT10	+	protein_coding	7803	same	757_ID	chr5	153725602	153727394	1793	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
12566	ENST00000658616.1_1	ENST00000583600.5_6	chr17	60866469	60869126	AC005821.2	+	lncRNA	chr17	60778675	60885705	MARCHF10	-	protein_coding	2657	opposite	360_ID	chr17	60866470	60869126	2657	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
12592	ENST00000659071.1_3	ENST00000374706.5_1	chr10	35732338	35733497	AL603824.1	-	lncRNA	chr10	35535952	35860852	CCNY	+	protein_coding	1159	opposite	5830_ID	chr10	35732339	35733497	1159	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
12624	ENST00000659695.1_1	ENST00000536438.5_3	chr6	35618773	35620633	AL033519.5	+	lncRNA	chr6	35541361	35696360	FKBP5	-	protein_coding	1860	opposite	4578_ID	chr6	35618774	35620633	1860	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
12638	ENST00000660049.1_3	ENST00000366898.6_5	chr6	161774710	161776382	AL132982.1	+	lncRNA	chr6	161768448	163148798	PRKN	-	protein_coding	1672	opposite	4818_ID	chr6	161774711	161776382	1672	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
12649	ENST00000660258.1_3	ENST00000361226.8_2	chr9	35491129	35491966	AL133476.1	-	lncRNA	chr9	35490107	35561892	RUSC2	+	protein_coding	837	opposite	4860_ID	chr9	35491130	35491966	837	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
12670	ENST00000660824.1_1	ENST00000339582.7_4	chr7	126173718	126177349	AC002057.1	+	lncRNA	chr7	126078651	126892995	GRM8	-	protein_coding	3631	opposite	29_ID	chr7	126173719	126177349	3631	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	11
12719	ENST00000661878.1_1	ENST00000287713.7_4	chr1	183221397	183228103	AL354953.1	+	lncRNA	chr1	183217371	183387515	NMNAT2	-	protein_coding	6706	opposite	5302_ID	chr1	183221398	183228103	6706	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	11	11
12723	ENST00000661958.1_3	ENST00000488612.5_2	chr14	69072112	69078449	AL121820.3	-	lncRNA	chr14	68286545	69196935	RAD51B	+	protein_coding	6337	opposite	4756_ID	chr14	69072113	69078449	6337	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
12745	ENST00000662479.1_3	ENST00000366898.6_5	chr6	161856129	161867048	AL138716.1	+	lncRNA	chr6	161768448	163148798	PRKN	-	protein_coding	10919	opposite	4970_ID	chr6	161856130	161867048	10919	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
12800	ENST00000663599.1_1	ENST00000441595.2_5	chr10	28552631	28554104	AL355501.1	+	lncRNA	chr10	28343071	28623415	MPP7	-	protein_coding	1473	opposite	5344_ID	chr10	28552632	28554104	1473	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
12803	ENST00000663643.1_3	ENST00000488612.5_2	chr14	69160372	69162451	AL133313.1	-	lncRNA	chr14	68286545	69196935	RAD51B	+	protein_coding	2079	opposite	4839_ID	chr14	69160373	69162451	2079	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	11
12915	ENST00000666089.1_3	ENST00000443119.7_3	chr16	70349344	70380709	AC012184.3	-	lncRNA	chr16	70333126	70406485	AC012184.2	+	protein_coding	31365	opposite	1344_ID	chr16	70349345	70380709	31365	*	-	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
12928	ENST00000666417.1_3	ENST00000334049.11_2	chr18	11758975	11786180	AP001120.5	-	lncRNA	chr18	11689262	11885684	GNAL	+	protein_coding	27205	opposite	6097_ID	chr18	11758976	11786180	27205	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
12955	ENST00000666883.1_1	ENST00000261381.7_4	chr16	17499534	17501930	AC009152.6	+	lncRNA	chr16	17195625	17564817	XYLT1	-	protein_coding	2396	opposite	912_ID	chr16	17499535	17501930	2396	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
13005	ENST00000667928.1_3	ENST00000540035.5_1	chr18	623742	626492	AP001178.4	-	lncRNA	chr18	597022	650334	CLUL1	+	protein_coding	2750	opposite	6108_ID	chr18	623743	626492	2750	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	11
13080	ENST00000669593.1_3	ENST00000427177.6_4	chr17	75382982	75384628	AC111182.2	-	lncRNA	chr17	75277580	75496675	SEPTIN9	+	protein_coding	1646	opposite	3809_ID	chr17	75382983	75384628	1646	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
13138	ENST00000670947.1_1	ENST00000675287.1_1	chr15	34277606	34280469	AC009268.3	+	lncRNA	chr15	34150982	34367356	AVEN	-	processed_transcript	2863	opposite	933_ID	chr15	34277607	34280469	2863	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
13175	ENST00000671610.1_3	ENST00000646266.1_2	chr1	56381276	56410653	LINC01753	-	lncRNA	chr1	56289488	56536186	AL603840.1	+	lncRNA	29378	opposite	7672_ID	chr1	56381277	56410653	29377	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
13194	ENST00000674075.1_1	ENST00000372348.7_4	chr9	133589012	133589111	AL359092.3	+	protein_coding	chr9	133588402	133761070	ABL1	+	protein_coding	99	same	5472_ID	chr9	133589013	133589111	99	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	11
13209	ENST00000675347.1_1	ENST00000234739.8_3	chr1	147083388	147083595	AC242628.1	+	protein_coding	chr1	147013270	147098017	BCL9	+	protein_coding	207	same	4274_ID	chr1	147083389	147083595	207	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	4	11
13221	ENST00000678483.1_1	ENST00000264235.13_7	chr3	119687890	119787051	AC092910.4	-	lncRNA	chr3	119540167	119813294	GSK3B	-	protein_coding	99161	same	3171_ID	chr3	119687891	119787051	99161	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
26010	ENST00000290155.8_4	ENST00000674123.1_2	chr21	33971663	33984687	CFAP298	-	protein_coding	chr21	33904722	33984920	CFAP298-TCP10L	-	nonsense_mediated_decay	20525	same	6626_ID	chr21	33971664	33984687	13024	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	11
20411	ENST00000384873.1	ENST00000313778.9_6	chr3	49058050	49058142	MIR191	-	miRNA	chr3	49052925	49058684	DALRD3	-	protein_coding	92	same	8139_ID	chr3	49058051	49058142	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
22711	ENST00000386910.1	ENST00000253107.12_5	chr19	10218326	10218411	SNORD105	+	snoRNA	chr19	10217037	10222688	PPAN	+	protein_coding	85	same	12225_ID	chr19	10218327	10218411	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
23621	ENST00000390851.1	ENST00000397541.6_2	chr7	141427783	141427948	RNU1-82P	+	snRNA	chr7	141408152	141431071	WEE2	+	protein_coding	165	same	10604_ID	chr7	141427784	141427948	165	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	11
26301	ENST00000403437.2_4	ENST00000587182.2_1	chr17	10293638	10325267	MYH8	-	protein_coding	chr17	10286460	10527203	MYHAS	+	lncRNA	31629	opposite	9203_ID	chr17	10293639	10325267	31629	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	11
27161	ENST00000408276.1	ENST00000354777.6_3	chr1	68649200	68649293	MIR1262	-	miRNA	chr1	68564155	68698228	WLS	-	protein_coding	93	same	8020_ID	chr1	68649201	68649293	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
31701	ENST00000410828.1	ENST00000396594.8_4	chr9	36267779	36267919	RNU4-53P	+	snRNA	chr9	36214437	36276975	GNE	-	protein_coding	140	opposite	10692_ID	chr9	36267780	36267919	140	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
49941	ENST00000458770.1	ENST00000253107.12_5	chr19	10220432	10220511	SNORD105B	+	snoRNA	chr19	10217037	10222688	PPAN	+	protein_coding	79	same	12227_ID	chr19	10220433	10220511	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	11
66111	ENST00000517068.1	ENST00000605970.1	chr10	47222340	47222456	RNA5SP312	+	rRNA	chr10	47207804	47243471	RP11-144G6.12	-	processed_transcript	116	opposite	10513_ID	chr10	47222341	47222456	116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
70391	ENST00000527922.1	ENST00000645242.1_2	chr8	11410732	11411716	RP11-148O21.3	-	antisense	chr8	11344402	11422107	BLK	+	protein_coding	984	opposite	11880_ID	chr8	11410733	11411716	984	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
7087	ENST00000529983.3_3	ENST00000313546.8_4	chr12	89913188	89918573	GALNT4	-	protein_coding	chr12	89813494	89919824	POC1B	-	protein_coding	5385	same	7102_ID	chr12	89913189	89918573	5385	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	11
75731	ENST00000553319.1	ENST00000263334.9_3	chr2	113998306	113998987	RP11-65I12.1	+	antisense	chr2	113973573	114036498	PAX8	-	protein_coding	681	opposite	11925_ID	chr2	113998307	113998987	681	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
93111	ENST00000582088.1	ENST00000251871.9_3	chr11	93533648	93533916	RN7SL195P	+	misc_RNA	chr11	93517447	93548129	MED17	+	protein_coding	268	same	10010_ID	chr11	93533649	93533916	268	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	11
98531	ENST00000585079.1	ENST00000396559.5_1	chr16	10499799	10500074	RN7SL99P	+	misc_RNA	chr16	10479911	10577495	ATF7IP2	+	protein_coding	275	same	10504_ID	chr16	10499800	10500074	275	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
108381	ENST00000607571.1_1	ENST00000607635.2_3	chr6	43486917	43487462	AL355802.3	-	lncRNA	chr6	43484826	43530156	POLR1C	+	protein_coding	545	opposite	5352_ID	chr6	43486918	43487462	545	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
51381	ENST00000459579.1	ENST00000581621.1_1	chr17	7480128	7480270	SNORD10	+	snoRNA	chr17	7476143	7485342	AC016876.2	+	lncRNA	142	same	12216_ID	chr17	7480129	7480270	142	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	11
93141	ENST00000582134.1	ENST00000246166.3_2	chr14	65511405	65511487	MIR4706	+	miRNA	chr14	65453612	65529368	FNTB	+	protein_coding	82	same	8693_ID	chr14	65511406	65511487	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	11
105201	ENST00000602874.1_1	ENST00000555044.6_4	chr14	74371969	74372339	AC005520.3	+	lncRNA	chr14	74353561	74399224	ZNF410	+	protein_coding	370	same	304_ID	chr14	74371970	74372339	370	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	11
107661	ENST00000606934.1_1	ENST00000246166.3_2	chr14	65470042	65470485	AL139022.2	-	lncRNA	chr14	65453612	65529368	FNTB	+	protein_coding	443	opposite	4998_ID	chr14	65470043	65470485	443	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	11
15	ENST00000209668.3_4	ENST00000500358.6_1	chr4	100197525	100212142	ADH1A	-	protein_coding	chr4	100010007	100222513	AP002026.1	+	lncRNA	14635	opposite	4356_ID	chr4	100197526	100212142	14617	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
51	ENST00000229402.4_4	ENST00000641304.1_1	chr12	9747146	9760512	KLRB1	-	protein_coding	chr12	9601093	9810988	AC092821.3	+	lncRNA	13366	opposite	7459_ID	chr12	9747147	9760512	13366	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	10
66	ENST00000237275.9_2	ENST00000454207.2_1	chr6	144185610	144259480	ZC2HC1B	+	protein_coding	chr6	144178454	144259608	AL049844.3	+	nonsense_mediated_decay	73908	same	13004_ID	chr6	144185611	144259480	73870	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	10
98	ENST00000246841.3_1	ENST00000255681.7_4	chr11	63870659	63886645	FLRT1	+	protein_coding	chr11	63766029	63933585	MACROD1	-	protein_coding	15986	opposite	7044_ID	chr11	63870660	63886645	15986	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
275	ENST00000293978.12_1	ENST00000431515.6_4	chr16	3019270	3023483	PAQR4	+	protein_coding	chr16	3018102	3030417	PKMYT1	-	protein_coding	4215	opposite	9500_ID	chr16	3019271	3023483	4213	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	10
282	ENST00000294954.12_5	ENST00000402114.6_3	chr2	48913912	48982863	LHCGR	-	protein_coding	chr2	48757063	49003656	STON1-GTF2A1L	+	protein_coding	68957	opposite	7521_ID	chr2	48913913	48982863	68951	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
339	ENST00000303204.9_2	ENST00000503473.5_3	chr5	176730799	176733950	PRELID1	+	protein_coding	chr5	176728461	176738871	MXD3	-	retained_intron	3151	opposite	9626_ID	chr5	176730800	176733950	3151	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
356	ENST00000305579.7_4	ENST00000497452.5_3	chr3	159706621	159713806	IL12A	+	protein_coding	chr3	159631188	159924879	IL12A-AS1	-	lncRNA	7185	opposite	7346_ID	chr3	159706622	159713806	7185	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	10
416	ENST00000313213.5_4	ENST00000613899.4_3	chr2	24337678	24346204	PFN4	-	protein_coding	chr2	24299751	24392507	FAM228B	+	protein_coding	8656	opposite	9539_ID	chr2	24337679	24346204	8526	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
560	ENST00000332303.6_4	ENST00000261275.4_4	chr15	29557192	29562026	NSMCE3	-	protein_coding	chr15	29412456	29862927	FAM189A1	-	protein_coding	4834	same	9309_ID	chr15	29557193	29562026	4834	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
600	ENST00000337318.8_5	ENST00000494792.1_4	chr10	126307860	126432947	FAM53B	-	protein_coding	chr10	126305648	126480296	AC068896.1	-	nonsense_mediated_decay	125087	same	6991_ID	chr10	126307861	126432947	125087	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	10
654	ENST00000343959.5_2	ENST00000444180.3_1	chr10	88780050	88784487	FAM25A	+	protein_coding	chr10	88753188	88784489	AL136982.6	+	lncRNA	4437	same	6986_ID	chr10	88780051	88784487	4437	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	10
656	ENST00000344320.8_2	ENST00000220496.9_4	chr15	41062177	41064647	C15orf62	+	protein_coding	chr15	41057358	41099671	DNAJC17	-	protein_coding	2470	opposite	6477_ID	chr15	41062178	41064647	2470	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
658	ENST00000345034.1_1	ENST00000480945.6_2	chr1	15986363	15988217	RSC1A1	+	protein_coding	chr1	15943952	15995539	DDI2	+	protein_coding	1854	same	11970_ID	chr1	15986364	15988217	1854	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	10	10
687	ENST00000355083.11_4	ENST00000504329.1_6	chr3	52870748	52931564	STIMATE	-	protein_coding	chr3	52867165	52931578	STIMATE-MUSTN1	-	protein_coding	61330	same	12569_ID	chr3	52870749	52931564	60816	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	10
766	ENST00000362160.1	ENST00000653129.1_1	chr21	17912142	17912236	MIRLET7C	+	miRNA	chr21	17300748	17994669	MIR99AHG	+	lncRNA	94	same	9131_ID	chr21	17912143	17912236	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
771	ENST00000362173.1	ENST00000427521.6_2	chr7	130135951	130136045	MIR335	+	miRNA	chr7	130126176	130146306	MEST	+	protein_coding	94	same	8326_ID	chr7	130135952	130136045	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
841	ENST00000362478.1	ENST00000392687.4_3	chr2	169462899	169463006	RNU6-766P	-	snRNA	chr2	169312758	169631644	CERS6	+	protein_coding	107	opposite	11485_ID	chr2	169462900	169463006	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
859	ENST00000362644.1	ENST00000448498.5_2	chr3	38345263	38345370	RNU6-235P	-	snRNA	chr3	38323788	38359740	SLC22A14	+	protein_coding	107	opposite	11090_ID	chr3	38345264	38345370	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
867	ENST00000362704.1	ENST00000568588.5_3	chr15	66793587	66793656	SNORD18C	-	snoRNA	chr15	66791660	66816870	RPL4	-	protein_coding	69	same	12384_ID	chr15	66793588	66793656	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
886	ENST00000362803.1	ENST00000568588.5_3	chr15	66795149	66795248	SNORD16	-	snoRNA	chr15	66791660	66816870	RPL4	-	protein_coding	99	same	12379_ID	chr15	66795150	66795248	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
930	ENST00000363070.1	ENST00000333538.10_2	chr7	71150436	71150732	RN7SKP75	-	misc_RNA	chr7	70597129	71178584	GALNT17	+	protein_coding	296	opposite	9919_ID	chr7	71150437	71150732	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
1057	ENST00000363753.1	ENST00000568588.5_3	chr15	66795580	66795652	SNORD18A	-	snoRNA	chr15	66791660	66816870	RPL4	-	protein_coding	72	same	12382_ID	chr15	66795581	66795652	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
1104	ENST00000363960.1	ENST00000240617.10_4	chr12	14706635	14706904	RN7SKP134	-	misc_RNA	chr12	14656594	14720817	PLBD1	-	protein_coding	269	same	9783_ID	chr12	14706636	14706904	269	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
1142	ENST00000364206.1	ENST00000295025.12_2	chr2	61138437	61138577	RNU4-51P	+	snRNA	chr2	61108655	61158745	REL	+	protein_coding	140	same	10690_ID	chr2	61138438	61138577	140	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
1201	ENST00000364512.1	ENST00000407967.7_1	chr12	117219909	117220013	RNU6-558P	+	snRNA	chr12	117176095	117291436	RNFT2	+	protein_coding	104	same	11336_ID	chr12	117219910	117220013	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
1281	ENST00000364915.1	ENST00000458640.5_3	chr6	31504150	31504226	SNORD117	-	snoRNA	chr6	31497995	31510225	DDX39B	-	protein_coding	76	same	12357_ID	chr6	31504151	31504226	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
1326	ENST00000365188.1	ENST00000477564.5_1	chr22	42961053	42961336	RN7SKP80	-	misc_RNA	chr22	42949864	42970387	SERHL2	+	nonsense_mediated_decay	283	opposite	9925_ID	chr22	42961054	42961336	283	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
1352	ENST00000365359.1	ENST00000316902.12_4	chr14	23625517	23625623	RNU6-1138P	-	snRNA	chr14	23594503	23652869	SLC7A8	-	protein_coding	106	same	10849_ID	chr14	23625518	23625623	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
1396	ENST00000365659.1	ENST00000568588.5_3	chr15	66794357	66794429	SNORD18B	-	snoRNA	chr15	66791660	66816870	RPL4	-	protein_coding	72	same	12383_ID	chr15	66794358	66794429	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
1476	ENST00000371124.4_2	ENST00000660383.1_3	chrX	127184940	127186377	ACTRT1	-	protein_coding	chrX	127161300	128262384	AL008633.1	-	lncRNA	1437	same	4344_ID	chrX	127184941	127186377	1437	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
1530	ENST00000375495.8_5	ENST00000473204.5_2	chr9	95606463	95640320	ZNF484	-	protein_coding	chr9	95571669	95650975	AL136981.4	+	lncRNA	33857	opposite	13050_ID	chr9	95606464	95640320	33857	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
1552	ENST00000376617.3_1	ENST00000328957.8	chr12	132852029	132854915	AC148477.3	+	lncRNA	chr12	132681053	132905789	GALNT9	-	protein_coding	2939	opposite	4244_ID	chr12	132852030	132854915	2886	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
1588	ENST00000379928.4_1	ENST00000474597.5_4	chr6	7276263	7299105	AL139095.4	+	lncRNA	chr6	7268538	7313440	SSR1	-	protein_coding	22842	opposite	5005_ID	chr6	7276264	7299105	22842	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
1590	ENST00000379963.1_3	ENST00000268459.6_3	chr16	50639986	50647595	AC007608.1	-	lncRNA	chr16	50582306	50683160	NKD1	+	protein_coding	7609	opposite	615_ID	chr16	50639987	50647595	7609	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	10
1614	ENST00000380601.2_1	ENST00000395324.6_5	chr12	48276431	48295308	AC121338.1	+	lncRNA	chr12	48235319	48336831	VDR	-	protein_coding	18877	opposite	3974_ID	chr12	48276432	48295308	18877	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	10
1630	ENST00000381852.4_4	ENST00000536668.2_4	chr12	11090006	11324172	TAS2R14	-	processed_transcript	chr12	10998447	11324197	AC018630.4	-	nonsense_mediated_decay	234166	same	12601_ID	chr12	11090007	11324172	234166	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	10
1674	ENST00000383917.1	ENST00000296328.9_4	chr3	196120580	196120683	RNU6-1279P	-	snRNA	chr3	196074532	196159298	UBXN7	-	protein_coding	103	same	10971_ID	chr3	196120581	196120683	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
1718	ENST00000384032.1	ENST00000676754.1_1	chr3	66343537	66343644	RNU6-787P	-	snRNA	chr3	66119284	66428506	SLC25A26	+	protein_coding	107	opposite	11499_ID	chr3	66343538	66343644	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
1754	ENST00000384137.1	ENST00000372582.6_2	chrX	104920063	104920170	RNU6-207P	-	snRNA	chrX	103810879	105011822	IL1RAPL2	+	protein_coding	107	opposite	11073_ID	chrX	104920064	104920170	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
1832	ENST00000384382.1	ENST00000651587.1_1	chr8	129011376	129011540	RNU1-106P	+	snRNA	chr8	128806786	129199347	PVT1	+	lncRNA	164	same	10552_ID	chr8	129011377	129011540	164	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
1875	ENST00000384508.1	ENST00000374282.8_4	chr1	26290687	26290791	RNU6-110P	+	snRNA	chr1	26286257	26324554	PAFAH2	-	protein_coding	104	opposite	10835_ID	chr1	26290688	26290791	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
1893	ENST00000384546.1	ENST00000375263.8_5	chr9	99018497	99018601	RNU6-1160P	-	snRNA	chr9	98997587	99064458	HSD17B3	-	protein_coding	104	same	10869_ID	chr9	99018498	99018601	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
1906	ENST00000384577.1	ENST00000296043.7_2	chr4	77453374	77453480	RNU6-145P	-	snRNA	chr4	77356381	77704406	SHROOM3	+	protein_coding	106	opposite	11031_ID	chr4	77453375	77453480	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
1927	ENST00000384622.1	ENST00000231524.14_4	chr5	64900487	64900588	RNU6-540P	-	snRNA	chr5	64885516	64920160	TRIM23	-	protein_coding	101	same	11323_ID	chr5	64900488	64900588	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
1944	ENST00000384681.1	ENST00000281081.12_2	chr14	32155897	32156004	RNU6-455P	-	snRNA	chr14	32030609	32330430	NUBPL	+	protein_coding	107	opposite	11258_ID	chr14	32155898	32156004	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
1948	ENST00000384691.1	ENST00000239374.8_2	chr6	151936907	151937014	RNU6-813P	-	snRNA	chr6	151815151	151942328	CCDC170	+	protein_coding	107	opposite	11521_ID	chr6	151936908	151937014	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
1955	ENST00000384718.1	ENST00000261875.10_2	chr15	65845418	65845525	RNU6-19P	-	snRNA	chr15	65822800	65870687	HACD3	+	protein_coding	107	opposite	11068_ID	chr15	65845419	65845525	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
1969	ENST00000384745.1	ENST00000299443.5_2	chr21	14993897	14994004	RNU6-286P	+	snRNA	chr21	14982497	15013906	POTED	+	protein_coding	107	same	11128_ID	chr21	14993898	14994004	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
2040	ENST00000384874.1	ENST00000392712.7_3	chr1	151518271	151518367	MIR554	+	miRNA	chr1	151512780	151556059	TUFT1	+	protein_coding	96	same	8928_ID	chr1	151518272	151518367	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
2064	ENST00000384906.1	ENST00000653129.1_1	chr21	17911408	17911489	MIR99A	+	miRNA	chr21	17300748	17994669	MIR99AHG	+	lncRNA	81	same	9124_ID	chr21	17911409	17911489	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
2071	ENST00000384918.1	ENST00000618621.4_3	chr3	188406568	188406654	MIR28	+	miRNA	chr3	187930720	188608460	LPP	+	protein_coding	86	same	8212_ID	chr3	188406569	188406654	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
2078	ENST00000384959.1	ENST00000339582.7_4	chr7	126698141	126698238	MIR592	-	miRNA	chr7	126078651	126892995	GRM8	-	protein_coding	97	same	8995_ID	chr7	126698142	126698238	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
2114	ENST00000385017.1	ENST00000370128.9_2	chr1	100746796	100746864	MIR553	+	miRNA	chr1	100731771	100758325	RTCA	+	protein_coding	68	same	8927_ID	chr1	100746797	100746864	68	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
2138	ENST00000385047.1	ENST00000360689.9_1	chr14	65937819	65937904	MIR625	+	miRNA	chr14	65877309	66210839	FUT8	+	protein_coding	85	same	9028_ID	chr14	65937820	65937904	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
2166	ENST00000385128.1	ENST00000653129.1_1	chr21	17962556	17962645	MIR125B2	+	miRNA	chr21	17300748	17994669	MIR99AHG	+	lncRNA	89	same	8014_ID	chr21	17962557	17962645	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
2177	ENST00000385188.1	ENST00000456133.5_1	chr2	47604813	47604909	MIR559	+	miRNA	chr2	47572301	47614740	EPCAM	+	nonsense_mediated_decay	96	same	8941_ID	chr2	47604814	47604909	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
2287	ENST00000390145.1	ENST00000270460.11_5	chr19	56196137	56196282	AC010525.2	+	miRNA	chr19	56186591	56220899	EPN1	+	protein_coding	145	same	1091_ID	chr19	56196138	56196282	145	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
2306	ENST00000390223.1	ENST00000360156.11_3	chrX	118780700	118780811	MIR766	-	miRNA	chrX	118749686	118827333	SEPTIN6	-	protein_coding	111	same	9085_ID	chrX	118780701	118780811	111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
2373	ENST00000390914.1	ENST00000343518.6	chr22	16276397	16276504	RNU6-816P	-	snRNA	chr22	16256440	16287937	POTEH	-	protein_coding	107	same	11524_ID	chr22	16276398	16276504	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
2415	ENST00000391087.1	ENST00000535787.5_1	chr2	148634990	148635097	RNU6-1275P	+	snRNA	chr2	148602085	148688395	ACVR2A	+	protein_coding	107	same	10967_ID	chr2	148634991	148635097	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
2439	ENST00000391194.1	ENST00000341247.8_3	chr12	50650020	50650127	RNU6-1093P	-	snRNA	chr12	50569570	50677329	LIMA1	-	protein_coding	107	same	10825_ID	chr12	50650021	50650127	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
2442	ENST00000391214.1	ENST00000547848.5_4	chr14	20008752	20008859	RNU6-1268P	-	snRNA	chr14	19988415	20020272	POTEG	-	protein_coding	107	same	10961_ID	chr14	20008753	20008859	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
2488	ENST00000394705.3_4	ENST00000406625.6_5	chr2	54080048	54087104	GPR75	-	protein_coding	chr2	53897429	54087297	ASB3	-	protein_coding	7056	same	7166_ID	chr2	54080049	54087104	7056	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	10
2492	ENST00000394899.6_5	ENST00000500358.6_1	chr4	100123795	100140403	ADH6	-	protein_coding	chr4	100010007	100222513	AP002026.1	+	lncRNA	16900	opposite	4359_ID	chr4	100123796	100140403	16608	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	10
2533	ENST00000398884.7_1	ENST00000456057.5_3	chr6	41755399	41757636	TOMM6	+	protein_coding	chr6	41748086	41757879	AL365205.1	+	nonsense_mediated_decay	2237	same	12759_ID	chr6	41755400	41757636	2237	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	10
2541	ENST00000399635.4_2	ENST00000252137.11_4	chr22	19118820	19120135	TSSK2	+	protein_coding	chr22	19117791	19132164	ESS2	-	protein_coding	1315	opposite	12806_ID	chr22	19118821	19120135	1315	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	10	10
2605	ENST00000401306.2	ENST00000296591.10_6	chr5	83269614	83269705	AC109496.1	-	miRNA	chr5	83236372	83680698	EDIL3	-	protein_coding	91	same	3771_ID	chr5	83269615	83269705	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
2686	ENST00000408191.1	ENST00000296043.7_2	chr4	77414399	77414539	AC112249.1	-	miRNA	chr4	77356381	77704406	SHROOM3	+	protein_coding	140	opposite	3820_ID	chr4	77414400	77414539	140	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
2700	ENST00000408249.1	ENST00000651587.1_1	chr8	129061397	129061484	MIR1207	+	miRNA	chr8	128806786	129199347	PVT1	+	lncRNA	87	same	7980_ID	chr8	129061398	129061484	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
2734	ENST00000408334.1	ENST00000651587.1_1	chr8	129162361	129162434	MIR1208	+	miRNA	chr8	128806786	129199347	PVT1	+	lncRNA	73	same	7981_ID	chr8	129162362	129162434	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
2740	ENST00000408340.1	ENST00000375429.8_4	chr6	31924615	31924717	MIR1236	-	miRNA	chr6	31919863	31926748	NELFE	-	protein_coding	102	same	7994_ID	chr6	31924616	31924717	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
2766	ENST00000408404.1	ENST00000619168.5_4	chr10	12767252	12767352	MIR548Q	-	miRNA	chr10	12391545	12877545	CAMK1D	+	protein_coding	100	opposite	8914_ID	chr10	12767253	12767352	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
2781	ENST00000408446.1	ENST00000261942.7_2	chr5	175878762	175878873	AC010297.1	+	miRNA	chr5	175875385	175937075	FAF2	+	protein_coding	111	same	1050_ID	chr5	175878763	175878873	111	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
2889	ENST00000408677.1	ENST00000341247.8_3	chr12	50627924	50627995	MIR1293	-	miRNA	chr12	50569570	50677329	LIMA1	-	protein_coding	71	same	8058_ID	chr12	50627925	50627995	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
2913	ENST00000408733.1	ENST00000297770.10_5	chr8	68623866	68623958	AC022861.1	+	miRNA	chr8	68334272	68658595	CPA6	-	protein_coding	92	opposite	1909_ID	chr8	68623867	68623958	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
2936	ENST00000408797.1	ENST00000619531.4_2	chr3	108039238	108039325	AC078855.1	+	miRNA	chr3	108015336	108097127	HHLA2	+	protein_coding	87	same	2595_ID	chr3	108039239	108039325	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
2938	ENST00000408806.1	ENST00000637002.1_1	chr1	67705122	67705210	AL109843.1	-	miRNA	chr1	67604589	67724850	IL23R	+	protein_coding	88	opposite	4709_ID	chr1	67705123	67705210	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
2945	ENST00000408816.1	ENST00000373766.9_1	chr6	36108274	36108365	Z95152.1	-	miRNA	chr6	36098260	36112301	MAPK13	+	protein_coding	91	opposite	12958_ID	chr6	36108275	36108365	91	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	10	10
2956	ENST00000408844.1	ENST00000651587.1_1	chr8	128972878	128972941	MIR1205	+	miRNA	chr8	128806786	129199347	PVT1	+	lncRNA	63	same	7979_ID	chr8	128972879	128972941	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
2963	ENST00000408861.1	ENST00000261205.9_2	chr12	79813036	79813101	MIR1252	+	miRNA	chr12	79258553	79845788	SYT1	+	protein_coding	65	same	8004_ID	chr12	79813037	79813101	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
2977	ENST00000408886.4_2	ENST00000536122.7_1	chr16	90095315	90096309	GAS8-AS1	-	lncRNA	chr16	90086050	90109880	GAS8	+	protein_coding	994	opposite	7106_ID	chr16	90095316	90096309	994	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
3040	ENST00000410270.1	ENST00000380338.9_5	chr9	20418318	20418425	RNU4-26P	+	snRNA	chr9	20341666	20622498	MLLT3	-	protein_coding	107	opposite	10670_ID	chr9	20418319	20418425	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
3054	ENST00000410365.1	ENST00000278903.11_2	chr11	125444614	125444714	RNU6-1156P	+	snRNA	chr11	125439372	125454579	EI24	+	protein_coding	100	same	10863_ID	chr11	125444615	125444714	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
3116	ENST00000410569.1	ENST00000651587.1_1	chr8	129022627	129022857	RNU4-25P	-	snRNA	chr8	128806786	129199347	PVT1	+	lncRNA	230	opposite	10669_ID	chr8	129022628	129022857	230	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
3151	ENST00000410753.1	ENST00000456133.5_1	chr2	47586643	47586916	RN7SKP119	-	misc_RNA	chr2	47572301	47614740	EPCAM	+	nonsense_mediated_decay	273	opposite	9773_ID	chr2	47586644	47586916	273	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
3155	ENST00000410774.1	ENST00000512097.9_6	chr5	113589209	113589451	RN7SKP89	+	misc_RNA	chr5	113391765	113832197	KCNN2	+	protein_coding	242	same	9932_ID	chr5	113589210	113589451	242	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
3209	ENST00000411067.1	ENST00000256925.11_1	chr18	20716398	20716476	AC105247.1	-	miRNA	chr18	20715726	20840431	CABLES1	+	protein_coding	78	opposite	3607_ID	chr18	20716399	20716476	78	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	10
3226	ENST00000411155.1	ENST00000281081.12_2	chr14	32131243	32131349	RNU6-602P	-	snRNA	chr14	32030609	32330430	NUBPL	+	protein_coding	106	opposite	11370_ID	chr14	32131244	32131349	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
3282	ENST00000411710.1_3	ENST00000544547.5_2	chr2	109293250	109295057	LIMS1-AS1	-	lncRNA	chr2	109150810	109303694	LIMS1	+	protein_coding	1807	opposite	7526_ID	chr2	109293251	109295057	1807	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	10
3341	ENST00000412822.1_1	ENST00000481247.6_4	chr6	38449467	38450307	BTBD9-AS1	+	lncRNA	chr6	38136226	38607705	BTBD9	-	protein_coding	840	opposite	6439_ID	chr6	38449468	38450307	840	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
3378	ENST00000414053.1_1	ENST00000381154.6_4	chrX	2822944	2824122	ARSD-AS1	+	lncRNA	chrX	2822012	2847380	ARSD	-	protein_coding	1178	opposite	6348_ID	chrX	2822945	2824122	1178	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	10	10
3408	ENST00000414656.1_3	ENST00000415992.5_1	chr9	139698378	139703300	CCDC183-AS1	-	lncRNA	chr9	139693674	139704487	AL355987.4	+	retained_intron	4922	opposite	6571_ID	chr9	139698379	139703300	4922	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
3426	ENST00000415011.6_3	ENST00000309955.8_3	chr2	202005011	202022546	CFLAR-AS1	-	lncRNA	chr2	201980886	202041410	CFLAR	+	protein_coding	17546	opposite	6631_ID	chr2	202005012	202022546	17535	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
3520	ENST00000417513.1_3	ENST00000542645.5_7	chr13	21951115	21952013	ZDHHC20-IT1	-	lncRNA	chr13	21946711	22033509	ZDHHC20	-	protein_coding	898	same	13009_ID	chr13	21951116	21952013	898	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
3525	ENST00000417591.1_3	ENST00000372236.9_4	chr6	43555966	43559099	POLH-AS1	-	lncRNA	chr6	43543921	43588260	POLH	+	protein_coding	3133	opposite	9594_ID	chr6	43555967	43559099	3133	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
3527	ENST00000417786.1_1	ENST00000366513.9_4	chr1	246769174	246771404	AL591623.1	+	lncRNA	chr1	246729757	246831897	CNST	+	protein_coding	2230	same	5792_ID	chr1	246769175	246771404	2230	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
3561	ENST00000418652.2_3	ENST00000656098.1_1	chr6	98657895	98662559	AL590727.1	-	lncRNA	chr6	97753452	98846739	AL589740.1	+	lncRNA	4664	opposite	5782_ID	chr6	98657896	98662559	4664	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
3662	ENST00000421465.2_3	ENST00000259782.9_2	chr6	54230132	54234769	TINAG-AS1	-	lncRNA	chr6	54173238	54254940	TINAG	+	protein_coding	4637	opposite	12702_ID	chr6	54230133	54234769	4637	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
3686	ENST00000421931.1_3	ENST00000452901.5_1	chr1	83439611	83451891	LINC01361	-	lncRNA	chr1	83368865	83632498	LINC01362	+	lncRNA	15389	opposite	7639_ID	chr1	83439612	83451891	12280	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
3695	ENST00000422150.1_1	ENST00000381971.8_6	chr9	3875583	3878809	AL137071.1	+	lncRNA	chr9	3824126	4300068	GLIS3	-	protein_coding	3226	opposite	4939_ID	chr9	3875584	3878809	3226	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
3762	ENST00000423869.1_1	ENST00000646804.1_3	chr13	48575524	48576688	SUCLA2-AS1	+	lncRNA	chr13	48516823	48612078	SUCLA2	-	protein_coding	1164	opposite	12576_ID	chr13	48575525	48576688	1164	*	+	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
3775	ENST00000424251.1_1	ENST00000378993.6_2	chrX	28960166	28960685	AC003659.1	+	lncRNA	chrX	28605562	29974835	IL1RAPL1	+	protein_coding	519	same	83_ID	chrX	28960167	28960685	519	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
3821	ENST00000425296.1_3	ENST00000646209.2_4	chr3	24496626	24500925	THRB-IT1	-	lncRNA	chr3	24158643	24536341	THRB	-	protein_coding	4299	same	12683_ID	chr3	24496627	24500925	4299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
3832	ENST00000425576.1_3	ENST00000397712.7_6	chr2	110352269	110363275	AC011753.2	-	lncRNA	chr2	110300375	110371543	SEPTIN10	-	protein_coding	11006	same	1291_ID	chr2	110352270	110363275	11006	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
3879	ENST00000427892.1_3	ENST00000294638.9_2	chr1	75595658	75598261	AC099786.2	-	lncRNA	chr1	75594118	75627218	LHX8	+	protein_coding	2603	opposite	3393_ID	chr1	75595659	75598261	2603	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	10
3944	ENST00000429584.3_2	ENST00000379484.10_2	chrX	21874104	21876858	YY2	+	protein_coding	chrX	21857734	21903541	MBTPS2	+	protein_coding	2754	same	12930_ID	chrX	21874105	21876858	2754	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
4002	ENST00000431019.1_3	ENST00000371621.5_2	chr20	49187511	49194578	AL133230.1	-	lncRNA	chr20	49126919	49201778	PTPN1	+	protein_coding	7067	opposite	4825_ID	chr20	49187512	49194578	7067	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
4049	ENST00000432438.1_3	ENST00000656098.1_1	chr6	98158828	98165073	AL080316.1	-	lncRNA	chr6	97753452	98846739	AL589740.1	+	lncRNA	6245	opposite	4678_ID	chr6	98158829	98165073	6245	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
4050	ENST00000432442.1_1	ENST00000651278.1_3	chrX	9217959	9243246	AC003684.1	+	lncRNA	chrX	8993117	9263722	FAM9B	-	protein_coding	25287	opposite	85_ID	chrX	9217960	9243246	25287	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
4069	ENST00000433113.1_1	ENST00000371205.5_5	chr10	97593264	97633515	AL365273.1	+	lncRNA	chr10	97515919	97637023	ENTPD1	+	protein_coding	40251	same	5538_ID	chr10	97593265	97633515	40251	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	10
4101	ENST00000434112.1_1	ENST00000392712.7_3	chr1	151512991	151534331	AL365436.2	+	lncRNA	chr1	151512780	151556059	TUFT1	+	protein_coding	21340	same	5545_ID	chr1	151512992	151534331	21340	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
4120	ENST00000434645.1_2	ENST00000309955.8_3	chr2	202031687	202032269	AC007283.1	+	lncRNA	chr2	201980886	202041410	CFLAR	+	protein_coding	582	same	535_ID	chr2	202031688	202032269	582	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	10	10
4121	ENST00000434656.1_1	ENST00000396396.6_2	chr9	71041758	71044285	AL161457.1	+	lncRNA	chr9	70971526	71145977	PGM5	+	protein_coding	2527	same	5148_ID	chr9	71041759	71044285	2527	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
4134	ENST00000434996.1_3	ENST00000618621.4_3	chr3	188280025	188286454	LPP-AS1	-	lncRNA	chr3	187930720	188608460	LPP	+	protein_coding	6429	opposite	7849_ID	chr3	188280026	188286454	6429	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
4155	ENST00000435357.2_2	ENST00000440698.1_1	chr2	52597739	52617194	LINC01867	+	lncRNA	chr2	51259738	52635055	AC007402.1	+	lncRNA	19455	same	7691_ID	chr2	52597740	52617194	19455	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
4246	ENST00000437930.4_2	ENST00000371927.7_1	chr10	90692399	90700097	ACTA2-AS1	+	lncRNA	chr10	90639490	90734910	STAMBPL1	+	protein_coding	8431	same	4339_ID	chr10	90692400	90700097	7698	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
4262	ENST00000438573.5_1	ENST00000675257.1_1	chr7	16250112	16310229	CRPPA-AS1	+	lncRNA	chr7	16131120	16542119	CRPPA	-	protein_coding	60121	opposite	6716_ID	chr7	16250113	16310229	60117	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	10
4378	ENST00000441749.1_3	ENST00000289388.4_2	chr2	219231387	219232558	CATIP-AS1	-	lncRNA	chr2	219221579	219232817	CATIP	+	protein_coding	1171	opposite	6556_ID	chr2	219231388	219232558	1171	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	10
4385	ENST00000441897.5_1	ENST00000422506.5_4	chr22	24030322	24041363	RGL4	+	nonsense_mediated_decay	chr22	23980673	24059543	GUSBP11	-	lncRNA	11041	opposite	9738_ID	chr22	24030323	24041363	11041	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	10
4500	ENST00000445458.1_4	ENST00000368693.6_2	chr10	127660756	127661695	FANK1-AS1	-	lncRNA	chr10	127585132	127698161	FANK1	+	protein_coding	939	opposite	7000_ID	chr10	127660757	127661695	939	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
4601	ENST00000448214.7_6	ENST00000673352.1_1	chr10	76265838	76289113	AC022540.1	-	lncRNA	chr10	75910997	76469684	ADK	+	protein_coding	24473	opposite	1885_ID	chr10	76265839	76289113	23275	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	10
4608	ENST00000448422.2_1	ENST00000494792.1_4	chr10	126392193	126402786	FAM53B-AS1	+	lncRNA	chr10	126305648	126480296	AC068896.1	-	nonsense_mediated_decay	10593	opposite	6993_ID	chr10	126392194	126402786	10593	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	7	10
4619	ENST00000448796.1	ENST00000373036.5_4	chr1	38292231	38293886	AL929472.1	-	protein_coding	chr1	38275245	38325264	MTF1	-	protein_coding	1655	same	5921_ID	chr1	38292232	38293886	1655	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
4639	ENST00000449248.1_1	ENST00000636615.1_3	chr11	1781577	1783716	AC068580.3	+	lncRNA	chr11	1756050	1785184	AC068580.4	-	protein_coding	2139	opposite	2421_ID	chr11	1781578	1783716	2139	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	10
4662	ENST00000450004.1_1	ENST00000420542.5_3	chr1	46512489	46514040	AL358075.1	+	lncRNA	chr1	46505813	46598708	PIK3R3	-	protein_coding	1551	opposite	5438_ID	chr1	46512490	46514040	1551	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
4668	ENST00000450154.1_1	ENST00000538962.7_4	chr9	114336471	114337707	AL135787.1	+	lncRNA	chr9	114312001	114362115	PTGR1	-	protein_coding	1236	opposite	4872_ID	chr9	114336472	114337707	1236	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	10
4688	ENST00000450944.1_1	ENST00000652561.2_4	chr2	67551758	67552436	AC023115.1	+	lncRNA	chr2	67402319	67625112	LINC01829	-	lncRNA	678	opposite	1932_ID	chr2	67551759	67552436	678	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	10
4696	ENST00000451099.1_3	ENST00000314728.9_2	chr17	19199908	19209574	EPN2-AS1	-	lncRNA	chr17	19140653	19240028	EPN2	+	protein_coding	9666	opposite	6913_ID	chr17	19199909	19209574	9666	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
4782	ENST00000453149.1_1	ENST00000537384.6_5	chr7	601594	605256	PRKAR1B-AS2	+	lncRNA	chr7	588834	766918	PRKAR1B	-	protein_coding	3662	opposite	9634_ID	chr7	601595	605256	3662	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
4898	ENST00000456355.1_3	ENST00000544301.7_3	chr10	17275323	17276832	AL133415.1	-	lncRNA	chr10	17270239	17279592	VIM	+	protein_coding	1509	opposite	4856_ID	chr10	17275324	17276832	1509	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	10
4944	ENST00000457383.1_3	ENST00000381971.8_6	chr9	4070905	4071884	AL359095.1	-	lncRNA	chr9	3824126	4300068	GLIS3	-	protein_coding	979	same	5475_ID	chr9	4070906	4071884	979	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
4985	ENST00000458694.6_5	ENST00000456057.5_3	chr6	41748519	41755190	PRICKLE4	+	protein_coding	chr6	41748086	41757879	AL365205.1	+	nonsense_mediated_decay	6671	same	9631_ID	chr6	41748520	41755190	6671	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	10
4988	ENST00000458769.1	ENST00000481247.6_4	chr6	38326923	38327005	AL031905.1	-	miRNA	chr6	38136226	38607705	BTBD9	-	protein_coding	82	same	4566_ID	chr6	38326924	38327005	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
4996	ENST00000458793.1	ENST00000352732.10_2	chr15	89664009	89664071	RNU7-195P	+	snRNA	chr15	89631686	89745586	ABHD2	+	protein_coding	62	same	11759_ID	chr15	89664010	89664071	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
5005	ENST00000458833.1	ENST00000261205.9_2	chr12	79742098	79742171	AC078917.1	+	miRNA	chr12	79258553	79845788	SYT1	+	protein_coding	73	same	2604_ID	chr12	79742099	79742171	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
5013	ENST00000458850.1	ENST00000646290.1_3	chr5	135048807	135048905	AC009009.1	-	miRNA	chr5	134914891	135225459	SLC25A48	+	protein_coding	98	opposite	843_ID	chr5	135048808	135048905	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
5034	ENST00000459007.1	ENST00000656098.1_1	chr6	98472406	98472497	MIR2113	+	miRNA	chr6	97753452	98846739	AL589740.1	+	lncRNA	91	same	8176_ID	chr6	98472407	98472497	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
5107	ENST00000459430.1	ENST00000339463.7_2	chr9	135839118	135839180	RNU7-21P	+	snRNA	chr9	135820937	135867074	GFI1B	+	protein_coding	62	same	11767_ID	chr9	135839119	135839180	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
5109	ENST00000459456.1	ENST00000261401.8_3	chr12	109062223	109062284	RNU7-169P	+	snRNA	chr12	109038884	109125294	CORO1C	-	protein_coding	61	opposite	11738_ID	chr12	109062224	109062284	61	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
5144	ENST00000459712.1_5	ENST00000485635.1_5	chr2	161114228	161128391	LINC02478	-	lncRNA	chr2	160998491	161128399	AC092153.1	-	lncRNA	14163	same	7778_ID	chr2	161114229	161128391	14163	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	10
5154	ENST00000460574.1_3	ENST00000485419.7_3	chr3	159483175	159486243	IQCJ-SCHIP1-AS1	-	lncRNA	chr3	158787052	159615147	IQCJ-SCHIP1	+	protein_coding	3226	opposite	7366_ID	chr3	159483176	159486243	3068	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
5251	ENST00000467225.1_3	ENST00000383699.8_3	chr3	85849136	85877200	CADM2-AS2	-	lncRNA	chr3	85008139	86123579	CADM2	+	protein_coding	28064	opposite	6537_ID	chr3	85849137	85877200	28064	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	10
5293	ENST00000470034.2	ENST00000450114.7_4	chr11	9602452	9602763	RN7SL56P	+	misc_RNA	chr11	9595216	9611532	WEE1	+	protein_coding	311	same	10275_ID	chr11	9602453	9602763	311	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
5294	ENST00000470060.2	ENST00000427715.2_2	chr8	118030184	118030485	RN7SL228P	+	misc_RNA	chr8	117963189	118188953	SLC30A8	+	protein_coding	301	same	10034_ID	chr8	118030185	118030485	301	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
5296	ENST00000470264.2	ENST00000296328.9_4	chr3	196126781	196127077	RN7SL738P	+	misc_RNA	chr3	196074532	196159298	UBXN7	-	protein_coding	296	opposite	10393_ID	chr3	196126782	196127077	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
5308	ENST00000470786.2	ENST00000299824.6_2	chr20	37501412	37501720	RN7SL116P	+	misc_RNA	chr20	37434339	37551667	PPP1R16B	+	protein_coding	308	same	9951_ID	chr20	37501413	37501720	308	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
5325	ENST00000471921.2_1	ENST00000497452.5_3	chr3	159733810	159749210	LINC01100	+	lncRNA	chr3	159631188	159924879	IL12A-AS1	-	lncRNA	15400	opposite	7602_ID	chr3	159733811	159749210	15400	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	10
5412	ENST00000477781.2	ENST00000381127.6_2	chrX	2976263	2976543	RN7SL578P	-	misc_RNA	chrX	2959511	3030768	ARSF	+	protein_coding	280	opposite	10281_ID	chrX	2976264	2976543	280	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
5446	ENST00000479724.2	ENST00000427715.2_2	chr8	118176206	118176492	RN7SL826P	+	misc_RNA	chr8	117963189	118188953	SLC30A8	+	protein_coding	286	same	10463_ID	chr8	118176207	118176492	286	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
5522	ENST00000485221.2	ENST00000284719.8_4	chr2	175104869	175105146	RN7SL65P	-	misc_RNA	chr2	174937174	175113260	OLA1	-	protein_coding	277	same	10345_ID	chr2	175104870	175105146	277	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
5546	ENST00000486501.2	ENST00000261413.10_4	chr5	71610225	71610515	RN7SL153P	-	misc_RNA	chr5	71515229	71616067	MRPS27	-	protein_coding	290	same	9980_ID	chr5	71610226	71610515	290	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
5558	ENST00000487928.2	ENST00000676754.1_1	chr3	66374278	66374574	RN7SL482P	+	misc_RNA	chr3	66119284	66428506	SLC25A26	+	protein_coding	296	same	10214_ID	chr3	66374279	66374574	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
5574	ENST00000489463.2	ENST00000371084.8_4	chr1	64121413	64121716	RN7SL130P	+	misc_RNA	chr1	64059081	64125916	PGM1	+	protein_coding	303	same	9966_ID	chr1	64121414	64121716	303	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
5620	ENST00000492377.2	ENST00000397195.10_2	chr17	2584241	2584528	RN7SL608P	+	misc_RNA	chr17	2496947	2588909	PAFAH1B1	+	protein_coding	287	same	10302_ID	chr17	2584242	2584528	287	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
5668	ENST00000495872.2	ENST00000296328.9_4	chr3	196124381	196124649	RN7SL434P	-	misc_RNA	chr3	196074532	196159298	UBXN7	-	protein_coding	268	same	10179_ID	chr3	196124382	196124649	268	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
5718	ENST00000498997.3_3	ENST00000221086.8_2	chr8	11173367	11182938	AF131216.1	-	lncRNA	chr8	11142324	11185655	MTMR9	+	protein_coding	9571	opposite	4398_ID	chr8	11173368	11182938	9571	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	10
5762	ENST00000502368.1_3	ENST00000509176.5_1	chr4	92240184	92246457	AC074124.1	-	lncRNA	chr4	91048735	92523064	CCSER1	+	protein_coding	6273	opposite	2570_ID	chr4	92240185	92246457	6273	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
5776	ENST00000502923.1_3	ENST00000362003.9_1	chr4	716063	717823	AC107464.1	-	lncRNA	chr4	699553	764428	PCGF3	+	protein_coding	1760	opposite	3694_ID	chr4	716064	717823	1760	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
5804	ENST00000504081.1_3	ENST00000282356.9_2	chr5	110613214	110638265	AC010275.1	-	lncRNA	chr5	110560081	110830584	CAMK4	+	protein_coding	25051	opposite	1045_ID	chr5	110613215	110638265	25051	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
5856	ENST00000505668.1_1	ENST00000395965.8_7	chr5	93196374	93199531	AC114980.1	-	lncRNA	chr5	92953430	93447368	FAM172A	-	protein_coding	3157	same	3883_ID	chr5	93196375	93199531	3157	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
5860	ENST00000505718.1_3	ENST00000460425.1_3	chr10	49718567	49719632	ARHGAP22-IT1	-	lncRNA	chr10	49654600	49864310	ARHGAP22	-	nonsense_mediated_decay	1065	same	6332_ID	chr10	49718568	49719632	1065	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
5902	ENST00000506895.1_3	ENST00000264596.4_2	chr4	178264157	178278186	AC027627.1	-	lncRNA	chr4	178231027	178284090	NEIL3	+	protein_coding	14029	opposite	2221_ID	chr4	178264158	178278186	14029	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	10
5951	ENST00000508393.5_4	ENST00000500358.6_1	chr4	100044807	100065448	ADH4	-	protein_coding	chr4	100010007	100222513	AP002026.1	+	lncRNA	34142	opposite	4358_ID	chr4	100044808	100065448	20641	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	10
5955	ENST00000508452.1_3	ENST00000646290.1_3	chr5	134984272	134989624	SLC25A48-AS1	-	lncRNA	chr5	134914891	135225459	SLC25A48	+	protein_coding	5352	opposite	12083_ID	chr5	134984273	134989624	5352	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
5992	ENST00000509911.2_1	ENST00000358127.9_4	chr9	37002693	37008037	AL161781.2	+	lncRNA	chr9	36833265	37034265	PAX5	-	protein_coding	5344	opposite	5172_ID	chr9	37002694	37008037	5344	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	10
5998	ENST00000510102.5_3	ENST00000646188.1_1	chr6	43479577	43484723	YIPF3	-	nonsense_mediated_decay	chr6	43477708	43489125	POLR1C	+	protein_coding	5154	opposite	12927_ID	chr6	43479578	43484723	5146	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	10
6038	ENST00000511361.1_3	ENST00000503176.6_2	chr17	48178067	48179284	AC002401.2	-	lncRNA	chr17	48172714	48189516	PDK2	+	protein_coding	1217	opposite	48_ID	chr17	48178068	48179284	1217	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
6064	ENST00000511981.1_3	ENST00000282356.9_2	chr5	110601506	110605787	AC010468.1	-	lncRNA	chr5	110560081	110830584	CAMK4	+	protein_coding	4281	opposite	1083_ID	chr5	110601507	110605787	4281	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
6098	ENST00000512875.2_1	ENST00000394817.7_5	chr5	138348338	138386892	AC011405.1	+	lncRNA	chr5	138282412	138534057	SIL1	-	protein_coding	38557	opposite	1206_ID	chr5	138348339	138386892	38554	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	10
6148	ENST00000514425.1_3	ENST00000460425.1_3	chr10	49832048	49833138	AC068898.2	-	lncRNA	chr10	49654600	49864310	ARHGAP22	-	nonsense_mediated_decay	1090	same	2457_ID	chr10	49832049	49833138	1090	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
6165	ENST00000515111.1_3	ENST00000509176.5_1	chr4	92029173	92033941	AC004054.1	-	lncRNA	chr4	91048735	92523064	CCSER1	+	protein_coding	4768	opposite	94_ID	chr4	92029174	92033941	4768	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
6174	ENST00000515414.1_3	ENST00000513237.5_1	chr4	106092510	106099220	TET2-AS1	-	lncRNA	chr4	106067449	106200973	TET2	+	protein_coding	6710	opposite	12651_ID	chr4	106092511	106099220	6710	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
6176	ENST00000515487.1_3	ENST00000505286.5_3	chr4	4477847	4483427	STX18-IT1	-	lncRNA	chr4	4417468	4543737	STX18	-	protein_coding	5580	same	12573_ID	chr4	4477848	4483427	5580	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
6202	ENST00000515904.1	ENST00000677174.1_1	chr20	18150548	18150633	AL050321.1	-	miRNA	chr20	18117871	18168995	KAT14	+	protein_coding	85	opposite	4652_ID	chr20	18150549	18150633	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
6229	ENST00000515965.1	ENST00000473755.5_1	chr3	12556204	12556306	RNU6-377P	+	snRNA	chr3	12526009	12581122	TSEN2	+	retained_intron	102	same	11193_ID	chr3	12556205	12556306	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
6230	ENST00000515968.1	ENST00000473755.5_1	chr3	12543121	12543203	RNU6-404P	-	snRNA	chr3	12526009	12581122	TSEN2	+	retained_intron	82	opposite	11213_ID	chr3	12543122	12543203	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
6250	ENST00000516053.2	ENST00000448838.7_1	chr11	34963383	34963467	MIR1343	+	miRNA	chr11	34937676	35017669	PDHX	+	protein_coding	84	same	8085_ID	chr11	34963384	34963467	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
6255	ENST00000516061.1	ENST00000336078.8_1	chr18	56593428	56593528	RNU2-69P	-	snRNA	chr18	56529831	56653712	ZNF532	+	protein_coding	100	opposite	10654_ID	chr18	56593429	56593528	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
6271	ENST00000516104.1	ENST00000477564.5_1	chr22	42965152	42965256	RNU6-513P	-	snRNA	chr22	42949864	42970387	SERHL2	+	nonsense_mediated_decay	104	opposite	11298_ID	chr22	42965153	42965256	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
6284	ENST00000516153.1	ENST00000625464.2_3	chrX	133537327	133537412	AL591668.1	-	miRNA	chrX	133507341	133562821	PHF6	+	protein_coding	85	opposite	5793_ID	chrX	133537328	133537412	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
6335	ENST00000516278.1	ENST00000509176.5_1	chr4	91291273	91291578	RN7SKP248	+	misc_RNA	chr4	91048735	92523064	CCSER1	+	protein_coding	305	same	9854_ID	chr4	91291274	91291578	305	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
6343	ENST00000516309.1	ENST00000619168.5_4	chr10	12498481	12498630	RNU6ATAC39P	+	snRNA	chr10	12391545	12877545	CAMK1D	+	protein_coding	149	same	11681_ID	chr10	12498482	12498630	149	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
6361	ENST00000516363.1	ENST00000344229.7_1	chr3	149635128	149635236	RNU6-720P	-	snRNA	chr3	149530556	149679909	RNF13	+	protein_coding	108	opposite	11451_ID	chr3	149635129	149635236	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
6393	ENST00000516464.1	ENST00000653129.1_1	chr21	17407732	17407829	RNU6-426P	-	snRNA	chr21	17300748	17994669	MIR99AHG	+	lncRNA	97	opposite	11228_ID	chr21	17407733	17407829	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
6410	ENST00000516515.1	ENST00000380338.9_5	chr9	20576215	20576300	AL163193.1	+	miRNA	chr9	20341666	20622498	MLLT3	-	protein_coding	85	opposite	5226_ID	chr9	20576216	20576300	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
6424	ENST00000516552.1	ENST00000294179.8_4	chr11	62583437	62583539	RNU6-118P	-	snRNA	chr11	62574331	62599523	STX5	-	protein_coding	102	same	10892_ID	chr11	62583438	62583539	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
6541	ENST00000516902.1	ENST00000371220.5_2	chr6	47683018	47683337	RN7SKP116	+	misc_RNA	chr6	47653599	47689757	ADGRF4	+	protein_coding	319	same	9769_ID	chr6	47683019	47683337	319	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
6561	ENST00000516954.1	ENST00000485419.7_3	chr3	159526204	159526359	RNU2-31P	-	snRNA	chr3	158787052	159615147	IQCJ-SCHIP1	+	protein_coding	155	opposite	10629_ID	chr3	159526205	159526359	155	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
6568	ENST00000516963.1	ENST00000473204.5_2	chr9	95583258	95583361	RNU6-714P	+	snRNA	chr9	95571669	95650975	AL136981.4	+	lncRNA	103	same	11447_ID	chr9	95583259	95583361	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
6581	ENST00000517003.1	ENST00000637523.1_3	chr13	40981258	40981577	RN7SKP2	-	misc_RNA	chr13	40870248	41055165	LINC00598	-	lncRNA	319	same	9818_ID	chr13	40981259	40981577	319	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
6585	ENST00000517012.1	ENST00000538336.5_3	chr7	33041561	33041666	RNU6-388P	-	snRNA	chr7	32997015	33046542	FKBP9	+	protein_coding	105	opposite	11201_ID	chr7	33041562	33041666	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
6599	ENST00000517052.1	ENST00000296591.10_6	chr5	83492700	83492807	RNU6-448P	+	snRNA	chr5	83236372	83680698	EDIL3	-	protein_coding	107	opposite	11254_ID	chr5	83492701	83492807	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
6603	ENST00000517059.1	ENST00000261275.4_4	chr15	29526071	29526183	snoZ278	+	snoRNA	chr15	29412456	29862927	FAM189A1	-	protein_coding	112	opposite	12477_ID	chr15	29526072	29526183	112	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
6628	ENST00000517119.1	ENST00000380615.8_4	chr13	30855901	30856006	RNU6-64P	+	snRNA	chr13	30776766	30881688	KATNAL1	-	protein_coding	105	opposite	11407_ID	chr13	30855902	30856006	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
6652	ENST00000517177.1	ENST00000537384.6_5	chr7	590369	590450	AC147651.2	+	miRNA	chr7	588834	766918	PRKAR1B	-	protein_coding	81	opposite	4242_ID	chr7	590370	590450	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
6664	ENST00000517212.1	ENST00000591793.1_1	chr19	44589365	44589456	RNU6-902P	-	snRNA	chr19	44529505	44591471	AC067968.1	+	nonsense_mediated_decay	91	opposite	11597_ID	chr19	44589366	44589456	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
6667	ENST00000517215.1	ENST00000307980.7_2	chr11	67162680	67162782	RNU6-1238P	-	snRNA	chr11	67159456	67165881	RAD9A	+	protein_coding	102	opposite	10934_ID	chr11	67162681	67162782	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
6675	ENST00000517234.1	ENST00000523288.5_3	chr8	131016773	131016847	RNU7-181P	-	snRNA	chr8	130853715	131028943	CYRIB	-	retained_intron	74	same	11749_ID	chr8	131016774	131016847	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
6694	ENST00000517265.1	ENST00000637002.1_1	chr1	67661822	67661926	RNU6-586P	+	snRNA	chr1	67604589	67724850	IL23R	+	protein_coding	104	same	11358_ID	chr1	67661823	67661926	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
6699	ENST00000517275.1	ENST00000345365.10_3	chr17	33420927	33420992	RNU6-840P	+	snRNA	chr17	33419226	33446888	RAD51D	-	protein_coding	65	opposite	11548_ID	chr17	33420928	33420992	65	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	10
6751	ENST00000518439.1_1	ENST00000427715.2_2	chr8	118140693	118142538	AC027419.2	+	lncRNA	chr8	117963189	118188953	SLC30A8	+	protein_coding	1845	same	2210_ID	chr8	118140694	118142538	1845	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
6784	ENST00000519368.1_1	ENST00000398056.6_5	chr8	17739551	17740170	AC087273.1	+	lncRNA	chr8	17721888	17767874	FGL1	-	protein_coding	619	opposite	2789_ID	chr8	17739552	17740170	619	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
6835	ENST00000521014.1_1	ENST00000523288.5_3	chr8	130902710	130914004	AC022973.4	+	lncRNA	chr8	130853715	131028943	CYRIB	-	retained_intron	11294	opposite	1925_ID	chr8	130902711	130914004	11294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
6867	ENST00000522190.1_3	ENST00000342228.7_3	chr8	42392671	42393447	AC090739.1	-	lncRNA	chr8	42273992	42397069	SLC20A2	-	protein_coding	776	same	2934_ID	chr8	42392672	42393447	776	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
6975	ENST00000526382.1_1	ENST00000297770.10_5	chr8	68644821	68647900	AC022874.1	+	lncRNA	chr8	68334272	68658595	CPA6	-	protein_coding	3079	opposite	1911_ID	chr8	68644822	68647900	3079	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
6990	ENST00000526867.1_1	ENST00000227756.5_4	chr11	11373972	11374854	AC023946.1	+	lncRNA	chr11	11292423	11643552	GALNT18	-	protein_coding	882	opposite	1989_ID	chr11	11373973	11374854	882	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
7021	ENST00000527726.1_1	ENST00000227756.5_4	chr11	11591630	11595329	AC104031.1	+	lncRNA	chr11	11292423	11643552	GALNT18	-	protein_coding	3699	opposite	3500_ID	chr11	11591631	11595329	3699	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
7057	ENST00000528848.3_3	ENST00000227756.5_4	chr11	11373488	11374797	CSNK2A3	-	protein_coding	chr11	11292423	11643552	GALNT18	-	protein_coding	1309	same	6721_ID	chr11	11373489	11374797	1309	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
7061	ENST00000528887.1_3	ENST00000279281.8_5	chr11	64878185	64879167	AP003068.1	-	lncRNA	chr11	64863685	64879334	VPS51	+	protein_coding	982	opposite	6232_ID	chr11	64878186	64879167	982	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	10
7086	ENST00000530059.2_5	ENST00000637610.1_3	chr1	54598640	54618595	CDCP2	-	protein_coding	chr1	54598358	54662106	AL357673.1	-	nonsense_mediated_decay	20803	same	6599_ID	chr1	54598641	54618595	19955	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	10
7119	ENST00000531087.1_3	ENST00000334418.6_2	chr11	118874451	118875603	AP003392.1	-	lncRNA	chr11	118868847	118886503	CENATAC	+	protein_coding	1152	opposite	6251_ID	chr11	118874452	118875603	1152	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
7162	ENST00000532473.1_1	ENST00000353836.9_3	chr19	51917551	51918219	AC008750.1	+	lncRNA	chr19	51913274	51921057	SIGLEC10	-	protein_coding	668	opposite	798_ID	chr19	51917552	51918219	668	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	10
7167	ENST00000532688.1_1	ENST00000353836.9_3	chr19	51919159	51920679	SIGLEC10-AS1	+	lncRNA	chr19	51913274	51921057	SIGLEC10	-	protein_coding	1702	opposite	12062_ID	chr19	51919160	51920679	1520	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	10
7169	ENST00000532760.1_1	ENST00000278379.9_6	chr11	35303359	35307556	SLC1A2-AS1	+	lncRNA	chr11	35272751	35441105	SLC1A2	-	protein_coding	4197	opposite	12077_ID	chr11	35303360	35307556	4197	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
7196	ENST00000533814.1_3	ENST00000227155.9_2	chr11	44626057	44626887	AC010768.1	-	lncRNA	chr11	44587212	44641908	CD82	+	protein_coding	830	opposite	1145_ID	chr11	44626058	44626887	830	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
7239	ENST00000536422.1_3	ENST00000642569.1_2	chr12	126885337	126890074	LINC02825	-	lncRNA	chr12	126675696	126918773	AC007368.1	+	lncRNA	4737	opposite	7803_ID	chr12	126885338	126890074	4737	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	10
7250	ENST00000537170.1_1	ENST00000255681.7_4	chr11	63803441	63871125	AP000721.2	+	lncRNA	chr11	63766029	63933585	MACROD1	-	protein_coding	67684	opposite	6016_ID	chr11	63803442	63871125	67684	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
7260	ENST00000537762.2_1	ENST00000328957.8	chr12	132853934	132857486	AC148477.2	+	lncRNA	chr12	132681053	132905789	GALNT9	-	protein_coding	3552	opposite	4243_ID	chr12	132853935	132857486	3552	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
7356	ENST00000543817.1_3	ENST00000255681.7_4	chr11	63885743	63886682	AP006333.1	-	lncRNA	chr11	63766029	63933585	MACROD1	-	protein_coding	939	same	6312_ID	chr11	63885744	63886682	939	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
7377	ENST00000544710.1_1	ENST00000258149.10_4	chr12	69221897	69222333	AC025423.1	+	lncRNA	chr12	69201956	69244466	MDM2	+	protein_coding	436	same	2083_ID	chr12	69221898	69222333	436	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
7381	ENST00000544948.1_1	ENST00000255681.7_4	chr11	63849161	63854647	AP006333.2	+	lncRNA	chr11	63766029	63933585	MACROD1	-	protein_coding	5486	opposite	6314_ID	chr11	63849162	63854647	5486	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
7430	ENST00000547042.1_3	ENST00000001008.6_2	chr12	2906301	2913104	AC005841.1	-	lncRNA	chr12	2904135	2914589	FKBP4	+	protein_coding	6803	opposite	372_ID	chr12	2906302	2913104	6803	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	10
7467	ENST00000548595.1_3	ENST00000552766.5_1	chr12	56498397	56507689	AC034102.4	-	lncRNA	chr12	56498320	56507691	PA2G4	+	protein_coding	9292	opposite	2244_ID	chr12	56498398	56507689	9292	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	10
7507	ENST00000550263.2_3	ENST00000676527.1_1	chr12	53692438	53694098	MYG1-AS1	-	lncRNA	chr12	53689275	53700955	AC073611.1	+	retained_intron	1660	opposite	9197_ID	chr12	53692439	53694098	1660	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
7536	ENST00000552061.1_3	ENST00000341247.8_3	chr12	50579362	50585146	AC008147.2	-	lncRNA	chr12	50569570	50677329	LIMA1	-	protein_coding	5784	same	708_ID	chr12	50579363	50585146	5784	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
7581	ENST00000553639.1_1	ENST00000267615.11_5	chr14	93533796	93538497	ITPK1-AS1	+	lncRNA	chr14	93403258	93582270	ITPK1	-	protein_coding	4701	opposite	7381_ID	chr14	93533797	93538497	4701	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
7639	ENST00000555435.1_1	ENST00000206542.9_4	chr14	20919463	20920077	AL355075.2	+	lncRNA	chr14	20914559	20922971	OSGEP	-	protein_coding	614	opposite	5314_ID	chr14	20919464	20920077	614	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
7713	ENST00000557642.1_1	ENST00000331299.6_5	chr14	37278075	37297934	AL162464.1	+	lncRNA	chr14	37147125	37641811	SLC25A21	-	protein_coding	19859	opposite	5204_ID	chr14	37278076	37297934	19859	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	10
7732	ENST00000558142.1_3	ENST00000308580.12_2	chr15	52179756	52193320	AC090971.2	-	lncRNA	chr15	52121849	52207922	TMOD3	+	protein_coding	13564	opposite	2962_ID	chr15	52179757	52193320	13564	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	10
7758	ENST00000558572.1_1	ENST00000335670.11_5	chr15	61504111	61506430	AC012404.2	+	lncRNA	chr15	60780482	61521501	RORA	-	protein_coding	2319	opposite	1374_ID	chr15	61504112	61506430	2319	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
7762	ENST00000558671.1_1	ENST00000261275.4_4	chr15	29665805	29669160	AC107980.1	-	lncRNA	chr15	29412456	29862927	FAM189A1	-	protein_coding	3355	same	3709_ID	chr15	29665806	29669160	3355	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
7787	ENST00000559302.1_3	ENST00000308580.12_2	chr15	52201098	52201839	AC090971.1	-	lncRNA	chr15	52121849	52207922	TMOD3	+	protein_coding	741	opposite	2961_ID	chr15	52201099	52201839	741	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	10	10
7803	ENST00000559666.1_1	ENST00000560079.7_2	chr15	85296352	85297733	AC012291.2	+	lncRNA	chr15	85291822	85349676	ZNF592	+	protein_coding	1381	same	1353_ID	chr15	85296353	85297733	1381	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
7828	ENST00000560199.1_1	ENST00000267859.8_4	chr15	59980715	59981617	AC092755.2	+	lncRNA	chr15	59951344	59981733	BNIP2	-	protein_coding	902	opposite	3142_ID	chr15	59980716	59981617	902	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	10
7862	ENST00000560876.1_1	ENST00000335670.11_5	chr15	61473447	61488137	AC012404.1	+	lncRNA	chr15	60780482	61521501	RORA	-	protein_coding	14690	opposite	1373_ID	chr15	61473448	61488137	14690	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
7869	ENST00000561202.1_1	ENST00000356113.10_1	chr15	58813509	58815570	AC018904.2	+	lncRNA	chr15	58702767	58861072	LIPC	+	protein_coding	2061	same	1672_ID	chr15	58813510	58815570	2061	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
7935	ENST00000562653.1_1	ENST00000649461.1_3	chr9	100505489	100507217	AL445531.1	+	lncRNA	chr9	100461906	100615362	PTCSC2	-	lncRNA	44702	opposite	5631_ID	chr9	100505490	100507217	1728	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
7977	ENST00000563243.1_3	ENST00000319555.8_2	chr16	88579367	88597461	AC116552.1	-	lncRNA	chr16	88519687	88603439	ZFPM1	+	protein_coding	18094	opposite	3913_ID	chr16	88579368	88597461	18094	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	10
8001	ENST00000563687.1_1	ENST00000261622.5_4	chr16	87870137	87871269	AC126696.2	+	lncRNA	chr16	87863628	87903113	SLC7A5	-	protein_coding	1132	opposite	4024_ID	chr16	87870138	87871269	1132	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	10
8010	ENST00000563879.2_3	ENST00000637969.1_1	chr16	54067908	54088495	AC007347.1	-	lncRNA	chr16	53738068	54187318	FTO	+	protein_coding	20587	opposite	549_ID	chr16	54067909	54088495	20587	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
8036	ENST00000564490.1_3	ENST00000320394.10_5	chr16	19772493	19777421	AC027130.1	-	lncRNA	chr16	19727777	19869789	IQCK	+	protein_coding	4928	opposite	2194_ID	chr16	19772494	19777421	4928	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	10
8050	ENST00000564801.1_3	ENST00000637969.1_1	chr16	54015140	54015824	AC007496.2	-	lncRNA	chr16	53738068	54187318	FTO	+	protein_coding	684	opposite	583_ID	chr16	54015141	54015824	684	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
8085	ENST00000565641.1_3	ENST00000637969.1_1	chr16	54032224	54033881	AC007496.1	-	lncRNA	chr16	53738068	54187318	FTO	+	protein_coding	1657	opposite	582_ID	chr16	54032225	54033881	1657	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
8115	ENST00000566036.1_1	ENST00000567134.5_3	chr15	75917133	75918031	AC105020.3	+	lncRNA	chr15	75890423	75918135	SNUPN	-	protein_coding	898	opposite	3585_ID	chr15	75917134	75918031	898	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	10
8137	ENST00000566639.1_1	ENST00000393335.7_1	chr16	81064374	81065090	AC092718.4	+	lncRNA	chr16	81040818	81066719	CENPN	+	protein_coding	716	same	3127_ID	chr16	81064375	81065090	716	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
8163	ENST00000567119.1_4	ENST00000302956.8_1	chr16	2580035	2581409	CEMP1	-	protein_coding	chr16	2570365	2581423	AMDHD2	+	protein_coding	1383	opposite	6619_ID	chr16	2580036	2581409	1374	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	10	10
8174	ENST00000567252.2_5	ENST00000642114.1_1	chr3	70243629	70361789	MDFIC2	-	protein_coding	chr3	70048996	70439010	SAMMSON	+	lncRNA	118160	opposite	7935_ID	chr3	70243630	70361789	118160	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
8208	ENST00000568093.3_1	ENST00000441369.6_4	chr15	40524282	40528310	AC020658.3	+	lncRNA	chr15	40509649	40568597	PAK6	+	protein_coding	4028	same	1718_ID	chr15	40524283	40528310	4028	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
8237	ENST00000568560.1_1	ENST00000544898.6_6	chr16	66543339	66543951	AC010542.2	+	lncRNA	chr16	66541905	66584025	TK2	-	protein_coding	612	opposite	1103_ID	chr16	66543340	66543951	612	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	10
8271	ENST00000569467.1_1	ENST00000308508.5_4	chr15	75968567	75969503	AC105020.4	+	lncRNA	chr15	75966662	76005189	CSPG4	-	protein_coding	936	opposite	3586_ID	chr15	75968568	75969503	936	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	10	10
8278	ENST00000569831.1_3	ENST00000204679.9_2	chr16	1408900	1411406	AL031709.1	-	lncRNA	chr16	1401931	1414114	GNPTG	+	protein_coding	2506	opposite	4547_ID	chr16	1408901	1411406	2506	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
8320	ENST00000571169.1_1	ENST00000294016.8_4	chr16	4082012	4082937	AC005736.1	+	lncRNA	chr16	4012653	4166443	ADCY9	-	protein_coding	925	opposite	348_ID	chr16	4082013	4082937	925	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
8321	ENST00000571197.1_1	ENST00000346183.8_3	chr16	68259871	68263048	AC020978.5	-	lncRNA	chr16	68119272	68263162	NFATC3	+	protein_coding	3177	opposite	1770_ID	chr16	68259872	68263048	3177	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	10
8332	ENST00000571975.1_1	ENST00000346183.8_3	chr16	68258615	68261637	AC020978.7	+	lncRNA	chr16	68119272	68263162	NFATC3	+	protein_coding	3022	same	1772_ID	chr16	68258616	68261637	3022	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	10
8362	ENST00000573622.1_1	ENST00000641304.1_1	chr12	9795467	9809666	AC010186.4	+	lncRNA	chr12	9601093	9810988	AC092821.3	+	lncRNA	14199	same	1033_ID	chr12	9795468	9809666	14199	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	10
8406	ENST00000576014.1_1	ENST00000337714.8_2	chr17	55169505	55173786	AC007114.2	-	lncRNA	chr17	55162606	55198705	AKAP1	+	protein_coding	4281	opposite	507_ID	chr17	55169506	55173786	4281	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
8422	ENST00000576540.1_3	ENST00000437219.6_2	chr17	1629041	1641879	AC130343.1	-	lncRNA	chr17	1619816	1641893	WDR81	+	protein_coding	12838	opposite	4059_ID	chr17	1629042	1641879	12838	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	10
8513	ENST00000577590.1	ENST00000313511.8_4	chr16	28855239	28855328	MIR4721	-	miRNA	chr16	28853731	28857669	TUFM	-	protein_coding	89	same	8708_ID	chr16	28855240	28855328	89	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	10
8532	ENST00000577678.1_3	ENST00000262293.9_4	chr17	57280037	57281190	AC099850.3	-	lncRNA	chr17	57233106	57284070	PRR11	+	protein_coding	1153	opposite	3401_ID	chr17	57280038	57281190	1153	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	10
8537	ENST00000577689.1	ENST00000294179.8_4	chr11	62584301	62584561	RN7SL119P	-	misc_RNA	chr11	62574331	62599523	STX5	-	protein_coding	260	same	9954_ID	chr11	62584302	62584561	260	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
8547	ENST00000577722.1	ENST00000524365.5_3	chr13	51922702	51922775	MIR5693	-	miRNA	chr13	51909908	51938871	SERPINE3	+	protein_coding	73	opposite	8968_ID	chr13	51922703	51922775	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
8617	ENST00000578142.1	ENST00000378993.6_2	chrX	29592394	29592475	MIR4666B	+	miRNA	chrX	28605562	29974835	IL1RAPL1	+	protein_coding	81	same	8655_ID	chrX	29592395	29592475	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
8641	ENST00000578301.1	ENST00000619550.4_1	chr20	43036759	43036843	MIR3646	+	miRNA	chr20	42984440	43061483	HNF4A	+	protein_coding	84	same	8360_ID	chr20	43036760	43036843	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
8651	ENST00000578365.1	ENST00000650700.1_1	chr4	53578848	53578914	MIR4449	+	miRNA	chr4	53578560	53732988	LINC01618	+	lncRNA	66	same	8548_ID	chr4	53578849	53578914	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
8699	ENST00000578640.1_1	ENST00000672465.1_1	chr17	19552685	19553248	AC115989.1	-	lncRNA	chr17	19551486	19589073	ALDH3A2	+	protein_coding	563	opposite	3890_ID	chr17	19552686	19553248	563	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
8750	ENST00000578948.1	ENST00000368874.8_7	chr1	151273142	151273439	RN7SL444P	-	misc_RNA	chr1	151264272	151300191	PI4KB	-	protein_coding	297	same	10187_ID	chr1	151273143	151273439	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
8758	ENST00000579017.1	ENST00000620860.4_3	chr1	45378739	45378844	AL136380.1	-	miRNA	chr1	45316193	45452394	EIF2B3	-	protein_coding	105	same	4908_ID	chr1	45378740	45378844	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
8778	ENST00000579104.1	ENST00000646290.1_3	chr5	135136917	135137003	AC011431.2	-	miRNA	chr5	134914891	135225459	SLC25A48	+	protein_coding	86	opposite	1208_ID	chr5	135136918	135137003	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
8784	ENST00000579145.1	ENST00000262995.8_1	chr4	144264612	144264688	MIR3139	+	miRNA	chr4	144257914	144395721	GAB1	+	protein_coding	76	same	8264_ID	chr4	144264613	144264688	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
8793	ENST00000579189.1	ENST00000380338.9_5	chr9	20502262	20502340	MIR4474	-	miRNA	chr9	20341666	20622498	MLLT3	-	protein_coding	78	same	8564_ID	chr9	20502263	20502340	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
8804	ENST00000579285.1_1	ENST00000577830.6_5	chr17	55989693	55999942	AC015845.1	+	lncRNA	chr17	55938603	56032773	CUEDC1	-	protein_coding	10249	opposite	1483_ID	chr17	55989694	55999942	10249	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
8816	ENST00000579369.1	ENST00000485419.7_3	chr3	159540400	159540484	AC021654.1	-	miRNA	chr3	158787052	159615147	IQCJ-SCHIP1	+	protein_coding	84	opposite	1797_ID	chr3	159540401	159540484	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
8818	ENST00000579389.1	ENST00000427229.2_1	chr10	45659461	45659536	MIR3156-1	+	miRNA	chr10	45642841	45666837	AL358394.2	+	lncRNA	75	same	8277_ID	chr10	45659462	45659536	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
8821	ENST00000579420.1	ENST00000247668.7_2	chr9	139781184	139781255	MIR4479	+	miRNA	chr9	139780967	139821059	TRAF2	+	protein_coding	71	same	8567_ID	chr9	139781185	139781255	71	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
8841	ENST00000579504.1	ENST00000618621.4_3	chr3	188348428	188348490	AC063932.1	-	miRNA	chr3	187930720	188608460	LPP	+	protein_coding	62	opposite	2350_ID	chr3	188348429	188348490	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
8872	ENST00000579673.1_1	ENST00000394908.9_5	chr17	27219486	27220360	AC024267.3	+	lncRNA	chr17	27206356	27224751	FLOT2	-	protein_coding	874	opposite	2005_ID	chr17	27219487	27220360	874	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
8874	ENST00000579686.1	ENST00000206474.11_5	chr14	23426158	23426238	MIR4707	-	miRNA	chr14	23415436	23426363	HAUS4	-	protein_coding	80	same	8695_ID	chr14	23426159	23426238	80	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	10
8890	ENST00000579779.1	ENST00000296411.11_2	chr4	99918537	99918611	MIR3684	+	miRNA	chr4	99916871	99983960	METAP1	+	protein_coding	74	same	8388_ID	chr4	99918538	99918611	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
8894	ENST00000579802.1	ENST00000301281.11_5	chr19	4445974	4446045	MIR4746	+	miRNA	chr19	4445002	4457791	UBXN6	-	protein_coding	71	opposite	8733_ID	chr19	4445975	4446045	71	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
8898	ENST00000579811.1	ENST00000650700.1_1	chr4	53617313	53617379	AC104066.1	-	miRNA	chr4	53578560	53732988	LINC01618	+	lncRNA	66	opposite	3502_ID	chr4	53617314	53617379	66	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
8923	ENST00000579929.1	ENST00000630384.2_1	chr6	170639848	170639932	MIR4644	+	miRNA	chr6	170599790	170714436	FAM120B	+	protein_coding	84	same	8629_ID	chr6	170639849	170639932	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
9092	ENST00000580856.1	ENST00000296043.7_2	chr4	77496703	77496779	MIR548AH	+	miRNA	chr4	77356381	77704406	SHROOM3	+	protein_coding	76	same	8872_ID	chr4	77496704	77496779	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
9129	ENST00000581038.1	ENST00000337195.9_3	chr10	126721351	126721439	MIR4296	-	miRNA	chr10	126672885	126849082	CTBP2	-	protein_coding	88	same	8492_ID	chr10	126721352	126721439	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
9151	ENST00000581168.1	ENST00000295414.8_4	chr2	208619530	208619605	MIR4775	+	miRNA	chr2	208576363	208620898	CCNYL1	+	protein_coding	75	same	8763_ID	chr2	208619531	208619605	75	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	10	10
9189	ENST00000581431.1	ENST00000376332.8_4	chr11	74431312	74431382	MIR4696	-	miRNA	chr11	74407473	74442471	CHRDL2	-	protein_coding	70	same	8683_ID	chr11	74431313	74431382	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
9195	ENST00000581483.1	ENST00000619550.4_1	chr20	43053691	43053781	AL132772.1	-	miRNA	chr20	42984440	43061483	HNF4A	+	protein_coding	90	opposite	4815_ID	chr20	43053692	43053781	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
9211	ENST00000581603.1	ENST00000333538.10_2	chr7	70775444	70775537	AC079398.1	-	miRNA	chr7	70597129	71178584	GALNT17	+	protein_coding	93	opposite	2660_ID	chr7	70775445	70775537	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
9212	ENST00000581622.1_1	ENST00000339474.9_3	chr17	62895883	62896834	AC103810.5	+	lncRNA	chr17	62850429	62915586	LRRC37A3	-	protein_coding	951	opposite	3473_ID	chr17	62895884	62896834	951	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
9233	ENST00000581740.1	ENST00000532489.5_1	chr19	50185327	50185411	MIR5088	+	miRNA	chr19	50179153	50191704	PRMT1	+	protein_coding	84	same	8826_ID	chr19	50185328	50185411	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
9234	ENST00000581742.1	ENST00000296438.9_3	chr3	48421323	48421620	RN7SL321P	+	misc_RNA	chr3	48413708	48436190	FBXW12	+	protein_coding	297	same	10103_ID	chr3	48421324	48421620	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
9338	ENST00000582249.1_3	ENST00000309794.16_3	chr17	80434472	80435800	NARF-AS1	-	lncRNA	chr17	80416616	80448413	NARF	+	protein_coding	1328	opposite	9227_ID	chr17	80434473	80435800	1328	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
9373	ENST00000582421.1	ENST00000339474.9_3	chr17	62867621	62867902	RN7SL404P	-	misc_RNA	chr17	62850429	62915586	LRRC37A3	-	protein_coding	281	same	10159_ID	chr17	62867622	62867902	281	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
9383	ENST00000582492.1	ENST00000619168.5_4	chr10	12620751	12620822	MIR4480	+	miRNA	chr10	12391545	12877545	CAMK1D	+	protein_coding	71	same	8569_ID	chr10	12620752	12620822	71	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
9401	ENST00000582630.1	ENST00000520099.5_1	chr8	92151488	92151751	RN7SL777P	+	misc_RNA	chr8	92114846	92231464	LRRC69	+	nonsense_mediated_decay	263	same	10425_ID	chr8	92151489	92151751	263	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
9402	ENST00000582634.1	ENST00000523288.5_3	chr8	131020579	131020699	MIR5194	-	miRNA	chr8	130853715	131028943	CYRIB	-	retained_intron	120	same	8857_ID	chr8	131020580	131020699	120	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
9423	ENST00000582720.1	ENST00000520099.5_1	chr8	92217712	92217787	MIR4661	+	miRNA	chr8	92114846	92231464	LRRC69	+	nonsense_mediated_decay	75	same	8651_ID	chr8	92217713	92217787	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
9468	ENST00000582964.1	ENST00000357166.11_4	chrX	128955797	128955898	AL359542.1	+	miRNA	chrX	128937263	128977862	ZDHHC9	-	protein_coding	101	opposite	5489_ID	chrX	128955798	128955898	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
9483	ENST00000583040.1	ENST00000583169.5_3	chr18	70520555	70520617	MIR548AV	-	miRNA	chr18	70409548	70534810	NETO1	-	protein_coding	62	same	8886_ID	chr18	70520556	70520617	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
9533	ENST00000583305.1	ENST00000392687.4_3	chr2	169439452	169439528	MIR4774	+	miRNA	chr2	169312758	169631644	CERS6	+	protein_coding	76	same	8762_ID	chr2	169439453	169439528	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
9574	ENST00000583589.1	ENST00000296043.7_2	chr4	77494720	77494785	MIR4450	+	miRNA	chr4	77356381	77704406	SHROOM3	+	protein_coding	65	same	8550_ID	chr4	77494721	77494785	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
9605	ENST00000583727.1	ENST00000579197.5_3	chr17	43547898	43548188	RN7SL730P	-	misc_RNA	chr17	43513269	43568094	PLEKHM1	-	nonsense_mediated_decay	290	same	10386_ID	chr17	43547899	43548188	290	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
9606	ENST00000583731.1	ENST00000380338.9_5	chr9	20411145	20411236	MIR4473	-	miRNA	chr9	20341666	20622498	MLLT3	-	protein_coding	91	same	8563_ID	chr9	20411146	20411236	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
9631	ENST00000583910.1_3	ENST00000584667.6_4	chr17	73675553	73676047	AC087749.2	-	lncRNA	chr17	73663417	73704139	SAP30BP	+	protein_coding	494	opposite	2848_ID	chr17	73675554	73676047	494	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
9641	ENST00000583954.1	ENST00000677057.1_1	chr2	240882431	240882511	MIR4786	-	miRNA	chr2	240832095	240964814	NDUFA10	-	retained_intron	80	same	8773_ID	chr2	240882432	240882511	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
9650	ENST00000584012.1_1	ENST00000309794.16_3	chr17	80439973	80441264	NARF-IT1	+	lncRNA	chr17	80416616	80448413	NARF	+	protein_coding	1291	same	9228_ID	chr17	80439974	80441264	1291	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
9702	ENST00000584275.1	ENST00000458640.5_3	chr6	31508877	31508955	SNORD84	-	snoRNA	chr6	31497995	31510225	DDX39B	-	protein_coding	78	same	12453_ID	chr6	31508878	31508955	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
9719	ENST00000584357.1	ENST00000333538.10_2	chr7	70772657	70772742	MIR3914-1	-	miRNA	chr7	70597129	71178584	GALNT17	+	protein_coding	85	opposite	8419_ID	chr7	70772658	70772742	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
9723	ENST00000584380.1	ENST00000311604.8_4	chr11	1880693	1880766	MIR4298	-	miRNA	chr11	1874313	1913493	LSP1	+	protein_coding	73	opposite	8494_ID	chr11	1880694	1880766	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
9747	ENST00000584520.1	ENST00000463537.5_4	chr3	49900818	49901093	RN7SL217P	-	misc_RNA	chr3	49895421	49907364	CAMKV	-	protein_coding	275	same	10027_ID	chr3	49900819	49901093	275	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
9771	ENST00000584688.1_1	ENST00000359872.6_4	chr17	31438875	31458761	AC008133.1	+	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	19886	opposite	706_ID	chr17	31438876	31458761	19886	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	10
9781	ENST00000584727.1_1	ENST00000583169.5_3	chr18	70410990	70413196	AC023301.1	-	lncRNA	chr18	70409548	70534810	NETO1	-	protein_coding	2206	same	1943_ID	chr18	70410991	70413196	2206	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
9810	ENST00000584899.1	ENST00000339463.7_2	chr9	135821093	135821158	MIR548AW	+	miRNA	chr9	135820937	135867074	GFI1B	+	protein_coding	65	same	8887_ID	chr9	135821094	135821158	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
9820	ENST00000584959.1_1	ENST00000339474.9_3	chr17	62888941	62906298	AC103810.2	+	lncRNA	chr17	62850429	62915586	LRRC37A3	-	protein_coding	17452	opposite	3471_ID	chr17	62888942	62906298	17357	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
9832	ENST00000585020.1_3	ENST00000584667.6_4	chr17	73679627	73680879	AC087749.1	-	lncRNA	chr17	73663417	73704139	SAP30BP	+	protein_coding	1257	opposite	2847_ID	chr17	73679628	73680879	1252	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
9860	ENST00000585184.1_3	ENST00000256925.11_1	chr18	20837127	20840318	AC011731.1	-	lncRNA	chr18	20715726	20840431	CABLES1	+	protein_coding	3191	opposite	1288_ID	chr18	20837128	20840318	3191	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	10
9864	ENST00000585189.1_1	ENST00000395321.6_3	chr17	26900134	26901261	AC005726.3	+	lncRNA	chr17	26900132	26903966	ALDOC	-	protein_coding	1127	opposite	343_ID	chr17	26900135	26901261	1127	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	10
9882	ENST00000585261.1	ENST00000381061.8_1	chr22	46156403	46156478	MIR4762	+	miRNA	chr22	46067677	46241184	ATXN10	+	protein_coding	75	same	8749_ID	chr22	46156404	46156478	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
9891	ENST00000585309.1	ENST00000646290.1_3	chr5	135138673	135138764	MIR5692C1	-	miRNA	chr5	134914891	135225459	SLC25A48	+	protein_coding	91	opposite	8966_ID	chr5	135138674	135138764	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
9905	ENST00000585559.1_1	ENST00000270460.11_5	chr19	56205483	56205924	AC010525.1	-	lncRNA	chr19	56186591	56220899	EPN1	+	protein_coding	441	opposite	1090_ID	chr19	56205484	56205924	441	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
9926	ENST00000586106.1_3	ENST00000592611.5_1	chr18	34481908	34503777	AC016493.1	-	lncRNA	chr18	34409068	34811481	KIAA1328	+	nonsense_mediated_decay	21869	opposite	1530_ID	chr18	34481909	34503777	21869	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
9937	ENST00000586418.5_3	ENST00000335327.6_3	chr13	27180680	27215501	WASF3-AS1	-	lncRNA	chr13	27131819	27263085	WASF3	+	protein_coding	35250	opposite	12903_ID	chr13	27180681	27215501	34821	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	10
9943	ENST00000586630.1_3	ENST00000592199.6_5	chr19	13124475	13125325	AC138474.1	-	lncRNA	chr19	13106288	13209610	NFIX	+	protein_coding	850	opposite	4186_ID	chr19	13124476	13125325	850	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
9984	ENST00000587850.1_1	ENST00000651179.1_1	chr19	29383837	29386856	AC008991.1	+	lncRNA	chr19	29374534	29461776	LINC00906	+	lncRNA	3019	same	842_ID	chr19	29383838	29386856	3019	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
9992	ENST00000588095.2_1	ENST00000592199.6_5	chr19	13180605	13182188	AC007787.1	-	lncRNA	chr19	13106288	13209610	NFIX	+	protein_coding	1583	opposite	648_ID	chr19	13180606	13182188	1583	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
10021	ENST00000589198.1_3	ENST00000651179.1_1	chr19	29451412	29455850	AC011524.2	-	lncRNA	chr19	29374534	29461776	LINC00906	+	lncRNA	4438	opposite	1265_ID	chr19	29451413	29455850	4438	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
10036	ENST00000589826.1_1	ENST00000592554.2_4	chr17	66553656	66578718	AC079210.1	+	lncRNA	chr17	66531256	66597508	FAM20A	-	protein_coding	25062	opposite	2630_ID	chr17	66553657	66578718	25062	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
10046	ENST00000590167.1_3	ENST00000651179.1_1	chr19	29440343	29441107	AC011524.1	-	lncRNA	chr19	29374534	29461776	LINC00906	+	lncRNA	764	opposite	1264_ID	chr19	29440344	29441107	764	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
10061	ENST00000590492.1_1	ENST00000253188.8_4	chr19	33708722	33712076	AC008738.4	+	lncRNA	chr19	33699569	33716756	SLC7A10	-	protein_coding	4539	opposite	792_ID	chr19	33708723	33712076	3354	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
10103	ENST00000591962.1_3	ENST00000316757.4_4	chr19	3754617	3756657	AC005954.1	-	lncRNA	chr19	3750769	3761690	APBA3	-	protein_coding	2040	same	388_ID	chr19	3754618	3756657	2040	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
10134	ENST00000593065.5_4	ENST00000592347.5_4	chr19	28927966	29026184	AC005381.1	-	lncRNA	chr19	28926294	29218587	AC005394.2	-	lncRNA	98218	same	289_ID	chr19	28927967	29026184	98218	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	10
10159	ENST00000594006.1_1	ENST00000601372.6_4	chr19	8932176	8934786	AC008734.1	+	lncRNA	chr19	8916845	8942980	ZNF558	-	protein_coding	2610	opposite	784_ID	chr19	8932177	8934786	2610	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	10
10163	ENST00000594114.1_3	ENST00000270593.2_2	chr19	51295941	51296841	AC010325.2	-	lncRNA	chr19	51293671	51298476	ACP4	+	protein_coding	900	opposite	1061_ID	chr19	51295942	51296841	900	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
10174	ENST00000594444.1_1	ENST00000269886.7_4	chr19	4363785	4364637	AC007292.1	+	lncRNA	chr19	4360366	4400544	SH3GL1	-	protein_coding	852	opposite	537_ID	chr19	4363786	4364637	852	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
10225	ENST00000596207.2_2	ENST00000348831.9_2	chr21	46520401	46521009	AL133499.1	-	lncRNA	chr21	46494494	46646475	ADARB1	+	protein_coding	608	opposite	4867_ID	chr21	46520402	46521009	608	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
10256	ENST00000596971.1_1	ENST00000294179.8_4	chr11	62575153	62575535	AP001160.4	-	lncRNA	chr11	62574331	62599523	STX5	-	protein_coding	382	same	6103_ID	chr11	62575154	62575535	382	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
10346	ENST00000599498.1	ENST00000262160.11_9	chr18	45404665	45408815	RP11-380M21.4	-	sense_intronic	chr18	45335327	45457030	SMAD2	-	protein_coding	4150	same	11897_ID	chr18	45404666	45408815	4150	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
10375	ENST00000600539.1_1	ENST00000232564.8_4	chr3	179114748	179116979	AC007620.2	+	lncRNA	chr3	179113875	179169258	GNB4	-	protein_coding	2231	opposite	618_ID	chr3	179114749	179116979	2231	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	10	10
10390	ENST00000600991.6_4	ENST00000372582.6_2	chrX	104463610	104465378	TEX13A	-	protein_coding	chrX	103810879	105011822	IL1RAPL2	+	protein_coding	1768	opposite	12654_ID	chrX	104463611	104465378	1768	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
10438	ENST00000602325.1_1	ENST00000362012.7_6	chr9	125134883	125135104	AL162424.1	+	lncRNA	chr9	125133302	125157982	PTGS1	+	protein_coding	221	same	5197_ID	chr9	125134884	125135104	221	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
10458	ENST00000602454.1_3	ENST00000653129.1_1	chr21	17789458	17791400	AP001172.2	-	lncRNA	chr21	17300748	17994669	MIR99AHG	+	lncRNA	1942	opposite	6105_ID	chr21	17789459	17791400	1942	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
10480	ENST00000602654.1_3	ENST00000653129.1_1	chr21	17947037	17954957	AP000962.1	-	lncRNA	chr21	17300748	17994669	MIR99AHG	+	lncRNA	7920	opposite	6061_ID	chr21	17947038	17954957	7920	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
10484	ENST00000602684.1	ENST00000563110.6_3	chr15	30940999	30941732	RP11-932O9.10	+	lincRNA	chr15	30918402	30977809	AC091057.5	+	nonsense_mediated_decay	733	same	11939_ID	chr15	30941000	30941732	733	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
10558	ENST00000603529.1_1	ENST00000630384.2_1	chr6	170606963	170607463	AL078605.1	-	lncRNA	chr6	170599790	170714436	FAM120B	+	protein_coding	500	opposite	4668_ID	chr6	170606964	170607463	500	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
10647	ENST00000605885.1_1	ENST00000436639.6_5	chr6	109319684	109320328	AL390208.1	+	lncRNA	chr6	109307639	109416022	SESN1	-	protein_coding	644	opposite	5549_ID	chr6	109319685	109320328	644	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
10678	ENST00000606183.4_4	ENST00000395965.8_7	chr5	93068925	93077306	POU5F2	-	protein_coding	chr5	92953430	93447368	FAM172A	-	protein_coding	8381	same	9605_ID	chr5	93068926	93077306	8381	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
10689	ENST00000606238.1	ENST00000257555.11_3	chr12	121438288	121439071	RP11-216P16.2	-	antisense	chr12	121416345	121440315	HNF1A	+	protein_coding	783	opposite	11883_ID	chr12	121438289	121439071	783	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	10
10706	ENST00000606441.1_1	ENST00000678874.1_1	chr6	3068278	3069128	AL031963.3	-	lncRNA	chr6	3064067	3115384	RIPK1	+	nonsense_mediated_decay	850	opposite	4568_ID	chr6	3068279	3069128	850	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
10716	ENST00000606528.1_1	ENST00000395965.8_7	chr5	93077345	93079206	AC108102.1	+	lncRNA	chr5	92953430	93447368	FAM172A	-	protein_coding	1861	opposite	3722_ID	chr5	93077346	93079206	1861	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
10725	ENST00000606601.1	ENST00000396355.5_2	chr16	15737150	15737229	MIR484	+	miRNA	chr16	15737123	15820210	NDE1	+	protein_coding	79	same	8791_ID	chr16	15737151	15737229	79	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	10
10864	ENST00000607877.1_1	ENST00000362003.9_1	chr4	750809	751528	AC139887.4	-	lncRNA	chr4	699553	764428	PCGF3	+	protein_coding	719	opposite	4216_ID	chr4	750810	751528	719	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
10875	ENST00000607978.1_2	ENST00000607882.5_1	chr7	66204815	66205372	AC027644.3	-	lncRNA	chr7	66147150	66274649	RABGEF1	+	nonsense_mediated_decay	557	opposite	2222_ID	chr7	66204816	66205372	557	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	10
10904	ENST00000608266.1_2	ENST00000541170.7_1	chr7	139043777	139044312	AC083880.1	-	lncRNA	chr7	139025104	139107257	LUC7L2	+	protein_coding	535	opposite	2721_ID	chr7	139043778	139044312	535	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
10971	ENST00000609129.2_2	ENST00000480336.1_1	chr1	32930672	32962287	ZBTB8B	+	protein_coding	chr1	32930657	33066393	AL033529.1	+	nonsense_mediated_decay	31615	same	13003_ID	chr1	32930673	32962287	31615	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	10
10973	ENST00000609146.1_1	ENST00000295414.8_4	chr2	208618595	208619159	AC096772.1	-	lncRNA	chr2	208576363	208620898	CCNYL1	+	protein_coding	564	opposite	3298_ID	chr2	208618596	208619159	564	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	10	10
10984	ENST00000609218.1_3	ENST00000538132.1_3	chr20	32869437	32874272	AL356299.2	-	lncRNA	chr20	32868075	32899608	AHCY	-	protein_coding	4835	same	5382_ID	chr20	32869438	32874272	4835	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	10
11016	ENST00000609581.1_1	ENST00000462832.5_1	chr2	29033146	29033572	AC097724.1	-	lncRNA	chr2	29005382	29063667	SPDYA	+	processed_transcript	426	opposite	3335_ID	chr2	29033147	29033572	426	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
11022	ENST00000609669.1_1	ENST00000271469.7_5	chr1	162562892	162563544	AL596325.2	+	lncRNA	chr1	162531295	162569632	UAP1	+	protein_coding	652	same	5827_ID	chr1	162562893	162563544	652	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
11085	ENST00000610245.1_1	ENST00000330817.11_4	chr22	50295875	50298224	AL671710.1	+	lncRNA	chr22	50293876	50312086	ALG12	-	protein_coding	2349	opposite	5881_ID	chr22	50295876	50298224	2349	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	10
11103	ENST00000610459.1_1	ENST00000293826.4_1	chr17	7461136	7461562	AC016876.3	-	lncRNA	chr17	7452415	7464918	TNFSF12-TNFSF13	+	protein_coding	426	opposite	1568_ID	chr17	7461137	7461562	426	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
11219	ENST00000613430.1_1	ENST00000328957.8	chr12	132859399	132861192	AC148477.4	+	lncRNA	chr12	132681053	132905789	GALNT9	-	protein_coding	1793	opposite	4245_ID	chr12	132859400	132861192	1793	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
11231	ENST00000613737.1_1	ENST00000356113.10_1	chr15	58746525	58747181	AC084781.1	+	lncRNA	chr15	58702767	58861072	LIPC	+	protein_coding	656	same	2753_ID	chr15	58746526	58747181	656	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
11244	ENST00000613987.1_1	ENST00000441369.6_4	chr15	40518586	40519270	AC020658.4	+	lncRNA	chr15	40509649	40568597	PAK6	+	protein_coding	684	same	1720_ID	chr15	40518587	40519270	684	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
11249	ENST00000614016.1_1	ENST00000407967.7_1	chr12	117238827	117239282	AC083806.3	+	lncRNA	chr12	117176095	117291436	RNFT2	+	protein_coding	455	same	2712_ID	chr12	117238828	117239282	455	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
11284	ENST00000614934.1_1	ENST00000652555.1_1	chr12	117440267	117440957	AC026368.1	+	lncRNA	chr12	117348754	117468953	FBXW8	+	protein_coding	690	same	2140_ID	chr12	117440268	117440957	690	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
11303	ENST00000615568.1_1	ENST00000356113.10_1	chr15	58748386	58748547	AC084781.2	+	lncRNA	chr15	58702767	58861072	LIPC	+	protein_coding	161	same	2758_ID	chr15	58748387	58748547	161	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
11360	ENST00000616822.1_1	ENST00000335670.11_5	chr15	61139955	61141267	AC022898.2	-	lncRNA	chr15	60780482	61521501	RORA	-	protein_coding	1312	same	1914_ID	chr15	61139956	61141267	1312	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
11380	ENST00000617183.1_2	ENST00000267257.11_4	chr12	120662546	120663224	AC004263.1	+	lncRNA	chr12	120648241	120703574	PXN	-	protein_coding	678	opposite	122_ID	chr12	120662547	120663224	678	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
11453	ENST00000619318.1_1	ENST00000263093.7_7	chr19	59011871	59012504	AC012313.9	+	lncRNA	chr19	59009699	59023359	SLC27A5	-	protein_coding	633	opposite	1362_ID	chr19	59011872	59012504	633	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
11496	ENST00000620020.1_1	ENST00000503176.6_2	chr17	48175823	48176263	AC002401.3	-	lncRNA	chr17	48172714	48189516	PDK2	+	protein_coding	440	opposite	49_ID	chr17	48175824	48176263	440	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
11509	ENST00000620274.1_1	ENST00000636728.1_3	chr12	51595466	51596364	AC139768.1	-	lncRNA	chr12	51580718	51611477	POU6F1	-	nonsense_mediated_decay	898	same	4212_ID	chr12	51595467	51596364	898	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
11617	ENST00000622438.1_1	ENST00000419474.5_4	chr14	23999890	24001576	AL135999.2	+	lncRNA	chr14	23990065	24020974	ZFHX2	-	protein_coding	1686	opposite	4885_ID	chr14	23999891	24001576	1686	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	10
11644	ENST00000623360.1_3	ENST00000441369.6_4	chr15	40542864	40545111	C15orf56	-	lncRNA	chr15	40509649	40568597	PAK6	+	protein_coding	2306	opposite	6475_ID	chr15	40542865	40545111	2247	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
11658	ENST00000623663.2_2	ENST00000637610.1_3	chr1	54603418	54608653	AL357673.2	+	lncRNA	chr1	54598358	54662106	AL357673.1	-	nonsense_mediated_decay	5235	opposite	5430_ID	chr1	54603419	54608653	5235	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	10
11661	ENST00000623760.1_1	ENST00000651403.1_1	chr22	48312476	48322013	FP325330.3	+	lncRNA	chr22	48027459	48418772	AL117329.1	+	lncRNA	9537	same	7071_ID	chr22	48312477	48322013	9537	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
11689	ENST00000624314.1_1	ENST00000651587.1_1	chr8	128958804	128960969	TMEM75	-	lncRNA	chr8	128806786	129199347	PVT1	+	lncRNA	2165	opposite	12739_ID	chr8	128958805	128960969	2165	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
11849	ENST00000635763.2_3	ENST00000262839.2_3	chrX	111119408	111147218	TRPC5OS	+	protein_coding	chrX	111017542	111326004	TRPC5	-	protein_coding	27940	opposite	12792_ID	chrX	111119409	111147218	27810	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
11860	ENST00000636421.1_3	ENST00000359872.6_4	chr17	32262455	32483019	AC004147.4	-	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	220564	same	104_ID	chr17	32262456	32483019	220564	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	10
12035	ENST00000648032.1_3	ENST00000361897.10_5	chr1	162116498	162144650	AL450163.1	-	lncRNA	chr1	162039480	162340265	NOS1AP	+	protein_coding	28535	opposite	5649_ID	chr1	162116499	162144650	28152	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	10
12045	ENST00000648183.1_1	ENST00000379325.7_3	chr1	1032964	1039978	AL390719.3	+	lncRNA	chr1	1017202	1051475	C1orf159	-	nonsense_mediated_decay	7014	opposite	5556_ID	chr1	1032965	1039978	7014	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
12058	ENST00000648345.1_3	ENST00000555661.5_1	chr14	74340391	74352138	AC005520.5	-	lncRNA	chr14	74318548	74353530	PTGR2	+	protein_coding	11867	opposite	305_ID	chr14	74340392	74352138	11747	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	10
12084	ENST00000648611.1_3	ENST00000640961.2_5	chr11	31639670	31789470	AC131571.1	-	lncRNA	chr11	31531313	31811872	ELP4	+	protein_coding	149831	opposite	4091_ID	chr11	31639671	31789470	149800	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	10
12088	ENST00000648650.1_1	ENST00000619168.5_4	chr10	12605149	12609350	AL731559.1	+	lncRNA	chr10	12391545	12877545	CAMK1D	+	protein_coding	4201	same	5894_ID	chr10	12605150	12609350	4201	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
12115	ENST00000649058.1_3	ENST00000589376.1_1	chr18	61848548	61927229	LINC01538	-	lncRNA	chr18	61771324	62090836	LINC01924	+	lncRNA	78742	opposite	7649_ID	chr18	61848549	61927229	78681	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	10
12157	ENST00000650019.1_1	ENST00000380815.5_6	chr6	2228036	2230495	AL035693.1	+	lncRNA	chr6	1624040	2245839	GMDS	-	protein_coding	2459	opposite	4614_ID	chr6	2228037	2230495	2459	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
12174	ENST00000650335.1_1	ENST00000556509.5_3	chr14	73168469	73170988	AL392024.1	+	lncRNA	chr14	73086003	73360796	DPF3	-	protein_coding	2519	opposite	5597_ID	chr14	73168470	73170988	2519	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
12192	ENST00000650724.1_1	ENST00000316273.11_5	chr19	49310577	49313974	AC026803.3	+	lncRNA	chr19	49298320	49314286	BCAT2	-	protein_coding	3397	opposite	2175_ID	chr19	49310578	49313974	3397	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
12236	ENST00000651685.1_3	ENST00000253506.9_2	chr18	77220377	77225843	AC018445.5	-	lncRNA	chr18	77155855	77289325	NFATC1	+	protein_coding	5466	opposite	1620_ID	chr18	77220378	77225843	5466	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	10
12289	ENST00000652633.1_4	ENST00000653129.1_1	chr21	17663399	17682703	AP001172.1	-	lncRNA	chr21	17300748	17994669	MIR99AHG	+	lncRNA	19304	opposite	6104_ID	chr21	17663400	17682703	19304	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
12293	ENST00000652780.1_3	ENST00000648066.1_1	chr14	53830863	53858766	AL365295.2	-	lncRNA	chr14	53684672	54252824	AL365295.1	+	lncRNA	27903	opposite	5540_ID	chr14	53830864	53858766	27903	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	10
12338	ENST00000653928.1_1	ENST00000334133.9_4	chr3	16402854	16411905	AC090948.4	+	lncRNA	chr3	16357351	16555206	RFTN1	-	protein_coding	9051	opposite	2956_ID	chr3	16402855	16411905	9051	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	10
12351	ENST00000654339.1_1	ENST00000523288.5_3	chr8	130965974	130976880	AC131568.1	+	lncRNA	chr8	130853715	131028943	CYRIB	-	retained_intron	10906	opposite	4090_ID	chr8	130965975	130976880	10906	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
12439	ENST00000656161.1_1	ENST00000442448.5_3	chr21	39875485	39915260	AP001037.1	+	lncRNA	chr21	39751951	40033704	ERG	-	protein_coding	39775	opposite	6073_ID	chr21	39875486	39915260	39775	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
12444	ENST00000656270.1_1	ENST00000287713.7_4	chr1	183342004	183343691	AL449223.1	+	lncRNA	chr1	183217371	183387515	NMNAT2	-	protein_coding	1687	opposite	5642_ID	chr1	183342005	183343691	1687	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
12450	ENST00000656562.1_3	ENST00000361507.5_4	chr11	77934860	77936955	AP002985.1	+	lncRNA	chr11	77926338	78128866	GAB2	-	protein_coding	2095	opposite	6223_ID	chr11	77934861	77936955	2095	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
12466	ENST00000656848.1_1	ENST00000395965.8_7	chr5	92957388	93010787	AC106818.2	+	lncRNA	chr5	92953430	93447368	FAM172A	-	protein_coding	53399	opposite	3653_ID	chr5	92957389	93010787	53399	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
12477	ENST00000657073.1_4	ENST00000551634.6_6	chr14	34146565	34152092	AL161851.2	-	lncRNA	chr14	33403601	34270309	NPAS3	+	protein_coding	5527	opposite	5177_ID	chr14	34146566	34152092	5527	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
12486	ENST00000657197.1_1	ENST00000489099.5_3	chr1	63953627	63973875	BX004807.1	+	lncRNA	chr1	63906443	63989173	ITGB3BP	-	nonsense_mediated_decay	20248	opposite	6442_ID	chr1	63953628	63973875	20248	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	10
12496	ENST00000657464.1_1	ENST00000610543.4_3	chr9	34568009	34583070	CNTFR-AS1	+	lncRNA	chr9	34551431	34590138	CNTFR	-	protein_coding	15061	opposite	6680_ID	chr9	34568010	34583070	15061	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	10
12497	ENST00000657493.1_1	ENST00000339582.7_4	chr7	126135365	126171390	AC002057.2	+	lncRNA	chr7	126078651	126892995	GRM8	-	protein_coding	36025	opposite	30_ID	chr7	126135366	126171390	36025	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
12524	ENST00000657954.1_1	ENST00000353224.10_4	chr20	9543587	9551904	AL353612.2	+	lncRNA	chr20	9518016	9819724	PAK5	-	protein_coding	8317	opposite	5244_ID	chr20	9543588	9551904	8317	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
12530	ENST00000658044.1_4	ENST00000369301.3_2	chr10	115625569	115629373	AL592546.3	-	lncRNA	chr10	115614419	115676953	NHLRC2	+	protein_coding	3804	opposite	5819_ID	chr10	115625570	115629373	3804	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
12547	ENST00000658390.1_3	ENST00000376896.8_2	chr9	77245709	77256674	AL137018.1	-	lncRNA	chr9	77112250	77308093	RORB	+	protein_coding	10965	opposite	4935_ID	chr9	77245710	77256674	10965	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	10
12562	ENST00000658571.1_3	ENST00000392837.9_6	chr12	107260954	107265283	AC007695.1	-	lncRNA	chr12	107168459	107283094	RIC8B	+	protein_coding	4329	opposite	640_ID	chr12	107260955	107265283	4329	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	10
12575	ENST00000658797.1_1	ENST00000555019.6_5	chr14	94405842	94410540	AL132642.1	+	lncRNA	chr14	94400511	94442916	ASB2	-	protein_coding	4698	opposite	4807_ID	chr14	94405843	94410540	4698	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	10
12596	ENST00000659131.1_1	ENST00000440698.1_1	chr2	51669096	51683051	AC007402.2	+	lncRNA	chr2	51259738	52635055	AC007402.1	+	lncRNA	13955	same	567_ID	chr2	51669097	51683051	13955	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
12625	ENST00000659704.1_1	ENST00000335670.11_5	chr15	60926701	60933114	AC009560.3	+	lncRNA	chr15	60780482	61521501	RORA	-	protein_coding	6413	opposite	978_ID	chr15	60926702	60933114	6413	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
12705	ENST00000661484.1_3	ENST00000653129.1_1	chr21	17877874	17880236	AP000962.3	-	lncRNA	chr21	17300748	17994669	MIR99AHG	+	lncRNA	2362	opposite	6062_ID	chr21	17877875	17880236	2362	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
12758	ENST00000662751.1_1	ENST00000604258.5_3	chr9	102121617	102134169	AL137067.3	+	lncRNA	chr9	102117691	102137509	NAMA	-	lncRNA	12552	opposite	4938_ID	chr9	102121618	102134169	12552	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	10
12787	ENST00000663260.1_1	ENST00000306999.7_4	chr7	16643440	16655920	AC005014.4	+	lncRNA	chr7	16639403	16685379	ANKMY2	-	protein_coding	12480	opposite	215_ID	chr7	16643441	16655920	12480	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	10
12794	ENST00000663342.1_1	ENST00000335670.11_5	chr15	60973762	60979447	RORA-AS2	+	lncRNA	chr15	60780482	61521501	RORA	-	protein_coding	5685	opposite	11873_ID	chr15	60973763	60979447	5685	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
12799	ENST00000663568.1_3	ENST00000440698.1_1	chr2	52204924	52249573	AC079304.1	-	lncRNA	chr2	51259738	52635055	AC007402.1	+	lncRNA	44649	opposite	2639_ID	chr2	52204925	52249573	44649	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	10
12813	ENST00000663900.1_2	ENST00000275300.3_2	chr6	160790231	160807966	AL591069.1	-	lncRNA	chr6	160769409	160873609	SLC22A3	+	protein_coding	17735	opposite	5789_ID	chr6	160790232	160807966	17735	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
12861	ENST00000664871.1_1	ENST00000621426.6_4	chr20	31072951	31074822	AL034550.3	+	lncRNA	chr20	31030864	31172692	NOL4L	-	protein_coding	1871	opposite	4593_ID	chr20	31072952	31074822	1871	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
12890	ENST00000665335.1_4	ENST00000551634.6_6	chr14	34066262	34070195	AL161851.1	-	lncRNA	chr14	33403601	34270309	NPAS3	+	protein_coding	3933	opposite	5176_ID	chr14	34066263	34070195	3933	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
12892	ENST00000665358.1_1	ENST00000523288.5_3	chr8	130952101	130963302	AC022973.3	+	lncRNA	chr8	130853715	131028943	CYRIB	-	retained_intron	11213	opposite	1924_ID	chr8	130952102	130963302	11201	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
12908	ENST00000665762.1_1	ENST00000251089.8_6	chr14	77256609	77260150	AF111169.4	+	lncRNA	chr14	77252351	77279225	ANGEL1	-	protein_coding	3541	opposite	4382_ID	chr14	77256610	77260150	3541	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	10
12941	ENST00000666597.1_3	ENST00000262995.8_1	chr4	144272667	144276947	AC097658.3	-	lncRNA	chr4	144257914	144395721	GAB1	+	protein_coding	4280	opposite	3334_ID	chr4	144272668	144276947	4280	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
12986	ENST00000667616.1_1	ENST00000339582.7_4	chr7	126855180	126869981	GRM8-AS1	+	lncRNA	chr7	126078651	126892995	GRM8	-	protein_coding	14801	opposite	7186_ID	chr7	126855181	126869981	14801	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
13000	ENST00000667845.1_1	ENST00000335670.11_5	chr15	60934252	60951990	AC009560.4	+	lncRNA	chr15	60780482	61521501	RORA	-	protein_coding	17738	opposite	979_ID	chr15	60934253	60951990	17738	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
13072	ENST00000669299.1_1	ENST00000298355.7_3	chr14	51489684	51497750	AL358334.4	+	lncRNA	chr14	51441979	51562779	TRIM9	-	protein_coding	8066	opposite	5452_ID	chr14	51489685	51497750	8066	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	10
13144	ENST00000671114.1_1	ENST00000258538.7_3	chr12	105252615	105265543	AC089985.1	+	lncRNA	chr12	105196330	105322433	SLC41A2	-	protein_coding	12928	opposite	2860_ID	chr12	105252616	105265543	12928	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	10
13147	ENST00000671167.1_1	ENST00000395965.8_7	chr5	93126210	93137026	AC099501.1	+	lncRNA	chr5	92953430	93447368	FAM172A	-	protein_coding	10816	opposite	3366_ID	chr5	93126211	93137026	10816	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	10
13151	ENST00000671250.1_1	ENST00000335670.11_5	chr15	61055791	61057516	AC022898.1	+	lncRNA	chr15	60780482	61521501	RORA	-	protein_coding	2033	opposite	1913_ID	chr15	61055792	61057516	1725	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
13198	ENST00000674444.1_3	ENST00000291572.13_2	chr21	45359799	45379554	AP001054.1	+	protein_coding	chr21	45285103	45407473	AGPAT3	+	protein_coding	19755	same	6079_ID	chr21	45359800	45379554	19755	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	10
13226	ENST00000679337.1_1	ENST00000264235.13_7	chr3	119696999	119708994	AC078856.1	-	lncRNA	chr3	119540167	119813294	GSK3B	-	protein_coding	11995	same	2596_ID	chr3	119697000	119708994	11995	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
42100	ENST00000226207.6_4	ENST00000587182.2_1	chr17	10395623	10421859	MYH1	-	protein_coding	chr17	10286460	10527203	MYHAS	+	lncRNA	26236	opposite	9198_ID	chr17	10395624	10421859	26236	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
89100	ENST00000244571.5_4	ENST00000505802.1_3	chr6	44266467	44281084	AARS2	-	protein_coding	chr6	44240930	44346694	AL353588.1	+	nonsense_mediated_decay	14617	opposite	5_ID	chr6	44266468	44281084	14617	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	10
13310	ENST00000255381.2_4	ENST00000587182.2_1	chr17	10346606	10372876	MYH4	-	protein_coding	chr17	10286460	10527203	MYHAS	+	lncRNA	26270	opposite	9201_ID	chr17	10346607	10372876	26270	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
78910	ENST00000362207.1	ENST00000532864.6_3	chr11	43602943	43603033	MIR129-2	+	miRNA	chr11	43600438	43861580	AC068205.2	+	lncRNA	90	same	8053_ID	chr11	43602944	43603033	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
109310	ENST00000363920.1	ENST00000439682.2_4	chr15	22071733	22071840	RNU6-631P	-	snRNA	chr15	22051852	22083259	POTEB	-	protein_coding	107	same	11395_ID	chr15	22071734	22071840	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
111710	ENST00000364023.1	ENST00000300005.7_4	chr16	20795830	20795937	RNU6-944P	+	snRNA	chr16	20791514	20817795	ERI2	-	protein_coding	107	opposite	11627_ID	chr16	20795831	20795937	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
16941	ENST00000383968.1	ENST00000651667.1_3	chr8	126913194	126913298	RNU6-442P	+	snRNA	chr8	126871964	126963394	LINC00861	-	lncRNA	104	opposite	11247_ID	chr8	126913195	126913298	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
25671	ENST00000401153.1	ENST00000284690.4_4	chr10	127531512	127531598	AL360176.1	+	miRNA	chr10	127524905	127569861	DHX32	-	protein_coding	86	opposite	5521_ID	chr10	127531513	127531598	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
30601	ENST00000410369.1	ENST00000257336.6_2	chr13	103472342	103472419	RNY5P8	+	misc_RNA	chr13	103451468	103493883	BIVM	+	protein_coding	77	same	11871_ID	chr13	103472343	103472419	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
37181	ENST00000422652.5_4	ENST00000534647.2_2	chr11	57510989	57519253	BTBD18	-	protein_coding	chr11	57509250	57572243	AP001931.1	+	retained_intron	8268	opposite	6437_ID	chr11	57510990	57519253	8264	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
49141	ENST00000456683.2_1	ENST00000632897.1_3	chr2	111206818	111208641	AC112229.2	+	lncRNA	chr2	111204315	111230618	LIMS4	-	protein_coding	1823	opposite	3816_ID	chr2	111206819	111208641	1823	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	10
49701	ENST00000458128.3_3	ENST00000644362.1_1	chrX	77223445	77225135	PGAM4	-	protein_coding	chrX	77166235	77382446	PGK1	+	protein_coding	1690	opposite	9541_ID	chrX	77223446	77225135	1690	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
50941	ENST00000459332.1	ENST00000551631.7_3	chr15	25232071	25232142	SNORD108	+	snoRNA	chr15	25224703	25281637	SNHG14	+	lncRNA	71	same	12229_ID	chr15	25232072	25232142	71	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
51391	ENST00000459579.1	ENST00000293831.13_2	chr17	7480128	7480270	SNORD10	+	snoRNA	chr17	7476142	7482324	EIF4A1	+	protein_coding	142	same	12218_ID	chr17	7480129	7480270	142	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
76741	ENST00000556212.1_1	ENST00000355338.6_3	chr14	100806168	100806891	AL157871.2	+	lncRNA	chr14	100800154	100843142	WARS1	-	protein_coding	723	opposite	5080_ID	chr14	100806169	100806891	723	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	10
77221	ENST00000557733.1_1	ENST00000555049.5_2	chr14	99978837	99979913	AL110504.1	+	lncRNA	chr14	99947760	100001381	CCNK	+	protein_coding	1076	same	4722_ID	chr14	99978838	99979913	1076	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
77781	ENST00000558905.1_3	ENST00000357980.9_3	chr15	63362223	63364110	AC079328.2	-	lncRNA	chr15	63334945	63364114	TPM1	+	protein_coding	1887	opposite	2643_ID	chr15	63362224	63364110	1887	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	10	10
81991	ENST00000567731.1_3	ENST00000322610.12_4	chr16	28873486	28874661	AC133550.3	-	lncRNA	chr16	28858009	28885526	SH2B1	+	protein_coding	1175	opposite	4113_ID	chr16	28873487	28874661	1175	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
84761	ENST00000577360.1_3	ENST00000610773.4_1	chr17	18762666	18764779	AC107982.2	-	lncRNA	chr17	18759611	18834600	PRPSAP2	+	protein_coding	2113	opposite	3710_ID	chr17	18762667	18764779	2113	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
93691	ENST00000582367.1_1	ENST00000345068.9_5	chr17	27948634	27949272	AC104564.2	-	lncRNA	chr17	27941779	27949917	CORO6	-	protein_coding	638	same	3552_ID	chr17	27948635	27949272	638	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
95351	ENST00000583286.1	ENST00000485419.7_3	chr3	159000434	159000523	MIR3919	+	miRNA	chr3	158787052	159615147	IQCJ-SCHIP1	+	protein_coding	89	same	8423_ID	chr3	159000435	159000523	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
98181	ENST00000584899.1	ENST00000643362.1_5	chr9	135821093	135821158	MIR548AW	+	miRNA	chr9	135782130	135822261	TSC1	-	protein_coding	65	opposite	8888_ID	chr9	135821094	135821158	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
106021	ENST00000604451.1	ENST00000551631.7_3	chr15	25236632	25236900	RP11-701H24.7	+	sense_intronic	chr15	25224703	25281637	SNHG14	+	lncRNA	268	same	11931_ID	chr15	25236633	25236900	268	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
107881	ENST00000607148.1_1	ENST00000454909.6_5	chr3	18450171	18451127	AC144521.1	-	lncRNA	chr3	18389431	18480265	SATB1	-	protein_coding	956	same	4225_ID	chr3	18450172	18451127	956	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	10
109131	ENST00000608266.1_2	ENST00000541515.3_1	chr7	139043777	139044312	AC083880.1	-	lncRNA	chr7	139026105	139107345	FMC1-LUC7L2	+	protein_coding	535	opposite	2722_ID	chr7	139043778	139044312	535	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
112251	ENST00000613401.1_1	ENST00000490623.3_4	chr20	62361423	62361729	AL121845.4	-	lncRNA	chr20	62340215	62370456	AL121845.3	+	nonsense_mediated_decay	306	opposite	4764_ID	chr20	62361424	62361729	306	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
116321	ENST00000622564.4_3	ENST00000587182.2_1	chr17	10424472	10453017	MYH2	-	protein_coding	chr17	10286460	10527203	MYHAS	+	lncRNA	28553	opposite	9200_ID	chr17	10424473	10453017	28545	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
124881	ENST00000657094.1_3	ENST00000485419.7_3	chr3	159429640	159449435	AC092943.2	-	lncRNA	chr3	158787052	159615147	IQCJ-SCHIP1	+	protein_coding	19795	opposite	3175_ID	chr3	159429641	159449435	19795	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	10
83761	ENST00000574212.1_1	ENST00000674995.1_1	chr16	15820530	15826850	AF001548.2	+	lncRNA	chr16	15744119	15828548	NDE1	+	protein_coding	6320	same	4364_ID	chr16	15820531	15826850	6320	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	10
87121	ENST00000578710.1_3	ENST00000602730.1_1	chr17	16691561	16692548	AC098850.1	-	lncRNA	chr17	16691370	16719854	AC098850.4	+	lncRNA	987	opposite	3345_ID	chr17	16691562	16692548	987	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
9333	ENST00000582212.2_3	ENST00000602730.1_1	chr17	16692192	16693815	FAM106C	+	lncRNA	chr17	16691370	16719854	AC098850.4	+	lncRNA	1623	same	6958_ID	chr17	16692193	16693815	1623	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
9	ENST00000053243.6_4	ENST00000673243.1_3	chr16	12059066	12061925	TNFRSF17	+	protein_coding	chr16	12021115	12070495	NPIPB2	-	protein_coding	2859	opposite	12751_ID	chr16	12059067	12061925	2859	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
13	ENST00000185150.9_5	ENST00000406625.6_5	chr2	54014180	54045933	ERLEC1	+	protein_coding	chr2	53897429	54087297	ASB3	-	protein_coding	31776	opposite	6927_ID	chr2	54014181	54045933	31753	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
99	ENST00000247452.4_4	ENST00000664519.1_1	chrX	141290127	141293076	MAGEC2	-	protein_coding	chrX	141022281	141828367	AL031073.2	+	lncRNA	2949	opposite	7905_ID	chrX	141290128	141293076	2949	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
148	ENST00000258412.8_4	ENST00000273077.9_3	chr2	219138919	219157226	TMBIM1	-	protein_coding	chr2	219135241	219211516	PNKD	+	protein_coding	18390	opposite	12705_ID	chr2	219138920	219157226	18307	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
152	ENST00000259357.3_3	ENST00000431442.2_2	chr9	125239236	125240205	OR1J1	-	protein_coding	chr9	125168923	125401957	AL359636.2	+	lncRNA	969	opposite	9364_ID	chr9	125239237	125240205	969	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
257	ENST00000290122.8_2	ENST00000650360.1_1	chr1	22328149	22339035	CELA3A	+	protein_coding	chr1	22310098	22357110	AL590556.3	+	lncRNA	10886	same	6615_ID	chr1	22328150	22339035	10886	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	4	9
285	ENST00000295304.5_2	ENST00000406625.6_5	chr2	53994940	54002333	CHAC2	+	protein_coding	chr2	53897429	54087297	ASB3	-	protein_coding	7393	opposite	6634_ID	chr2	53994941	54002333	7393	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
306	ENST00000297913.3_2	ENST00000431442.2_2	chr9	125377016	125377961	OR1Q1	+	protein_coding	chr9	125168923	125401957	AL359636.2	+	lncRNA	945	same	9372_ID	chr9	125377017	125377961	945	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
364	ENST00000306602.3_4	ENST00000341029.9_1	chr4	76942270	76944650	CXCL10	-	protein_coding	chr4	76932352	77033955	ART3	+	protein_coding	2380	opposite	6743_ID	chr4	76942271	76944650	2380	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
369	ENST00000307221.5_3	ENST00000357137.9_2	chr22	41255552	41258117	DNAJB7	-	protein_coding	chr22	41253151	41328819	XPNPEP3	+	protein_coding	2565	opposite	6826_ID	chr22	41255553	41258117	2565	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
458	ENST00000319560.7_2	ENST00000674243.1_2	chrX	102965836	102968960	TMEM31	+	protein_coding	chrX	102957137	102983552	GLRA4	-	processed_transcript	3124	opposite	12733_ID	chrX	102965837	102968960	3124	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	9
475	ENST00000321830.5	ENST00000263697.6_4	chr1	28527012	28527152	AL353354.1	-	protein_coding	chr1	28526788	28559540	DNAJC8	-	protein_coding	140	same	5236_ID	chr1	28527013	28527152	140	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
509	ENST00000325844.9_2	ENST00000649547.1_4	chr15	89010938	89024007	MRPS11	+	protein_coding	chr15	89002731	89089816	AC013489.1	-	protein_coding	13324	opposite	9167_ID	chr15	89010939	89024007	13069	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
543	ENST00000329447.5_3	ENST00000495075.5_3	chr3	138737872	138739768	PRR23B	-	protein_coding	chr3	138724647	139075888	MRPS22	+	protein_coding	1896	opposite	9651_ID	chr3	138737873	138739768	1896	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
571	ENST00000332884.11_2	ENST00000656249.1_3	chr4	108852704	108874617	CYP2U1	+	protein_coding	chr4	108784823	108899955	CYP2U1-AS1	-	lncRNA	21913	opposite	6756_ID	chr4	108852705	108874617	21913	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
592	ENST00000335302.5_1	ENST00000431442.2_2	chr9	125273080	125274022	OR1J2	+	protein_coding	chr9	125168923	125401957	AL359636.2	+	lncRNA	942	same	9365_ID	chr9	125273081	125274022	942	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
624	ENST00000339917.10_4	ENST00000530611.1_6	chr14	24674901	24677454	TSSK4	+	protein_coding	chr14	24658362	24682679	AL136295.1	-	protein_coding	2667	opposite	12807_ID	chr14	24674902	24677454	2553	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
634	ENST00000340750.1_2	ENST00000431442.2_2	chr9	125281419	125282361	OR1J4	+	protein_coding	chr9	125168923	125401957	AL359636.2	+	lncRNA	942	same	9366_ID	chr9	125281420	125282361	942	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
668	ENST00000348433.10_1	ENST00000564349.5_4	chr16	20817842	20860987	REXO5	+	protein_coding	chr16	20807661	20911671	ERI2	-	protein_coding	43237	opposite	9735_ID	chr16	20817843	20860987	43145	*	+	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
681	ENST00000354552.7_5	ENST00000421999.8_3	chr3	99551987	99833357	FILIP1L	-	protein_coding	chr3	99536705	99900576	CMSS1	+	protein_coding	284373	opposite	7028_ID	chr3	99551988	99833357	281370	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
709	ENST00000358438.6_3	ENST00000476151.5_3	chr7	102305814	102312076	POLR2J2	-	protein_coding	chr7	102277495	102312088	AC105052.3	-	nonsense_mediated_decay	6262	same	9597_ID	chr7	102305815	102312076	6262	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	9
727	ENST00000360295.13_3	ENST00000580241.5_1	chr17	27281918	27333163	SEZ6	-	protein_coding	chr17	27277530	27383701	PIPOX	+	processed_transcript	51540	opposite	12045_ID	chr17	27281919	27333163	51245	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
737	ENST00000361010.7_3	ENST00000523376.5_1	chr11	14988214	14993832	CALCA	-	protein_coding	chr11	14926542	15100182	CALCB	+	protein_coding	5684	opposite	6538_ID	chr11	14988215	14993832	5618	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
748	ENST00000362104.1	ENST00000447388.7_2	chr1	41220026	41220118	MIR30E	+	miRNA	chr1	41157380	41237275	NFYC	+	protein_coding	92	same	8231_ID	chr1	41220027	41220118	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
811	ENST00000362291.1	ENST00000371699.5_3	chr9	139565053	139565138	MIR126	+	miRNA	chr9	139553307	139567130	EGFL7	+	protein_coding	85	same	8015_ID	chr9	139565054	139565138	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
872	ENST00000362728.1	ENST00000291572.13_2	chr21	45339675	45339782	RNU6-859P	-	snRNA	chr21	45285103	45407473	AGPAT3	+	protein_coding	107	opposite	11565_ID	chr21	45339676	45339782	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
925	ENST00000363016.1	ENST00000549190.5_1	chr12	42792351	42792453	RNU6-249P	+	snRNA	chr12	42632248	42835749	PPHLN1	+	protein_coding	102	same	11097_ID	chr12	42792352	42792453	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
932	ENST00000363074.1	ENST00000436639.6_5	chr6	109380711	109380817	RNU6-653P	-	snRNA	chr6	109307639	109416022	SESN1	-	protein_coding	106	same	11410_ID	chr6	109380712	109380817	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
964	ENST00000363262.1	ENST00000511306.5_3	chr18	14531674	14531781	RNU6-1021P	-	snRNA	chr18	14507337	14543584	POTEC	-	nonsense_mediated_decay	107	same	10772_ID	chr18	14531675	14531781	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
994	ENST00000363426.1	ENST00000228705.7_4	chr12	63244517	63244681	RNU1-83P	-	snRNA	chr12	63037773	63328930	PPM1H	-	protein_coding	164	same	10605_ID	chr12	63244518	63244681	164	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
1072	ENST00000363813.1	ENST00000357137.9_2	chr22	41313746	41313850	RNU6-379P	+	snRNA	chr22	41253151	41328819	XPNPEP3	+	protein_coding	104	same	11195_ID	chr22	41313747	41313850	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
1088	ENST00000363913.1	ENST00000255559.7_4	chr17	70659961	70660291	RN7SKP180	-	misc_RNA	chr17	70642087	71088832	SLC39A11	-	protein_coding	330	same	9808_ID	chr17	70659962	70660291	330	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
1110	ENST00000364001.1	ENST00000327813.9_2	chr22	29530001	29530108	RNU6-810P	+	snRNA	chr22	29469105	29564321	KREMEN1	+	protein_coding	107	same	11518_ID	chr22	29530002	29530108	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
1116	ENST00000364036.1	ENST00000618282.5_4	chrX	77092785	77092892	RNU6-854P	+	snRNA	chrX	77081243	77150932	MAGT1	-	protein_coding	107	opposite	11560_ID	chrX	77092786	77092892	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
1153	ENST00000364283.1	ENST00000371153.9_4	chr1	62763820	62763928	RNU6-371P	-	snRNA	chr1	62701836	62785105	KANK4	-	protein_coding	108	same	11188_ID	chr1	62763821	62763928	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
1227	ENST00000364662.1	ENST00000394817.7_5	chr5	138348017	138348130	RNA5SP194	+	rRNA	chr5	138282412	138534057	SIL1	-	protein_coding	113	opposite	10509_ID	chr5	138348018	138348130	113	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
1385	ENST00000365571.1	ENST00000374680.4_4	chr6	33167377	33167472	RNY4P10	+	misc_RNA	chr6	33161364	33168442	RXRB	-	protein_coding	95	opposite	11846_ID	chr6	33167378	33167472	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
1410	ENST00000366408.3_3	ENST00000650631.1_3	chr1	168873142	169056243	LINC00970	-	lncRNA	chr1	168665111	169072514	AL135926.1	-	lncRNA	183101	same	7585_ID	chr1	168873143	169056243	183101	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
1471	ENST00000370981.3_5	ENST00000420587.5_1	chr1	68511568	68517314	DIRAS3	-	protein_coding	chr1	68297985	68668670	GNG12-AS1	+	lncRNA	5746	opposite	6805_ID	chr1	68511569	68517314	5746	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
1496	ENST00000372492.9_5	ENST00000461557.2_3	chr1	43638000	43720029	CFAP57	+	protein_coding	chr1	43637280	43736607	EBNA1BP2	-	processed_transcript	82029	opposite	6629_ID	chr1	43638001	43720029	82029	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	9
1526	ENST00000375337.4_4	ENST00000647389.1_1	chr9	97321001	97356106	FBP2	-	protein_coding	chr9	97317335	97366272	PCAT7	+	lncRNA	35105	opposite	7006_ID	chr9	97321002	97356106	35105	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
1632	ENST00000382065.8_4	ENST00000382079.3_3	chr5	34017962	34043318	C1QTNF3	-	protein_coding	chr5	33987278	34124633	C1QTNF3-AMACR	-	nonsense_mediated_decay	25356	same	6498_ID	chr5	34017963	34043318	25356	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
1636	ENST00000382545.5_4	ENST00000640877.1_1	chr12	5019070	5027422	KCNA1	+	protein_coding	chr12	5019032	5135178	AC005906.2	+	lncRNA	8352	same	7400_ID	chr12	5019071	5027422	8352	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	9
1655	ENST00000383878.1	ENST00000376137.8_4	chr10	27079468	27079575	RNU6-946P	-	snRNA	chr10	27035524	27150016	ABI1	-	protein_coding	107	same	11628_ID	chr10	27079469	27079575	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
1658	ENST00000383885.1	ENST00000420613.7_4	chr12	49050430	49050565	SNORA2A	-	snoRNA	chr12	49046993	49076021	KANSL2	-	protein_coding	135	same	12166_ID	chr12	49050431	49050565	135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
1720	ENST00000384035.1	ENST00000367147.9_2	chr1	205564168	205564275	RNU6-418P	+	snRNA	chr1	205538141	205572046	MFSD4A	+	protein_coding	107	same	11220_ID	chr1	205564169	205564275	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
1812	ENST00000384304.1	ENST00000262030.8_5	chr12	57038810	57038885	SNORD59A	-	snoRNA	chr12	57031958	57039768	ATP5F1B	-	protein_coding	75	same	12434_ID	chr12	57038811	57038885	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
1830	ENST00000384371.1	ENST00000286574.9_4	chr12	65489528	65489635	RNU6-166P	+	snRNA	chr12	65444405	65515085	WIF1	-	protein_coding	107	opposite	11043_ID	chr12	65489529	65489635	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
1857	ENST00000384456.1	ENST00000264028.5_2	chr11	118464702	118464808	RNU6-1157P	+	snRNA	chr11	118443123	118473748	ARCN1	+	protein_coding	106	same	10864_ID	chr11	118464703	118464808	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
1863	ENST00000384473.1	ENST00000380787.5_3	chrX	10550856	10550959	RNU6-800P	+	snRNA	chrX	10413595	10851773	MID1	-	protein_coding	103	opposite	11511_ID	chrX	10550857	10550959	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
1909	ENST00000384583.1	ENST00000420613.7_4	chr12	49061239	49061376	SNORA2B	-	snoRNA	chr12	49046993	49076021	KANSL2	-	protein_coding	137	same	12167_ID	chr12	49061240	49061376	137	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
1919	ENST00000384602.1	ENST00000262848.6_4	chrX	3525298	3525406	RNU6-146P	-	snRNA	chrX	3522380	3631690	PRKX	-	protein_coding	108	same	11032_ID	chrX	3525299	3525406	108	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
1950	ENST00000384700.1	ENST00000441448.7_2	chr6	111329472	111329579	RNU6-906P	-	snRNA	chr6	111303240	111349466	RPF2	+	protein_coding	107	opposite	11602_ID	chr6	111329473	111329579	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
1959	ENST00000384725.1	ENST00000406053.5_6	chr2	53797510	53797617	RNU6-997P	-	snRNA	chr2	53759809	53992686	ASB3	-	protein_coding	107	same	11658_ID	chr2	53797511	53797617	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
1974	ENST00000384764.1	ENST00000545028.2_3	chr13	70377071	70377173	RNY3P10	+	misc_RNA	chr13	70274725	70682625	KLHL1	-	protein_coding	102	opposite	11838_ID	chr13	70377072	70377173	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
2030	ENST00000384863.1	ENST00000487099.7_5	chr9	127454720	127454830	MIR181A2	+	miRNA	chr9	127279553	127533590	NR6A1	-	protein_coding	110	opposite	8119_ID	chr9	127454721	127454830	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
2062	ENST00000384904.1	ENST00000355059.9_2	chr15	75645951	75646026	MIR631	-	miRNA	chr15	75639379	75649456	NEIL1	+	protein_coding	75	opposite	9035_ID	chr15	75645952	75646026	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
2090	ENST00000384976.2	ENST00000369851.7_3	chr1	110141514	110141589	MIR197	+	miRNA	chr1	110091236	110142817	GNAI3	+	protein_coding	75	same	8157_ID	chr1	110141515	110141589	75	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
2097	ENST00000384988.1	ENST00000370920.8_5	chr1	71533313	71533399	MIR186	-	miRNA	chr1	71528973	71546718	ZRANB2	-	protein_coding	86	same	8131_ID	chr1	71533314	71533399	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
2101	ENST00000384996.1	ENST00000361897.10_5	chr1	162312335	162312430	MIR556	+	miRNA	chr1	162039480	162340265	NOS1AP	+	protein_coding	95	same	8931_ID	chr1	162312336	162312430	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
2107	ENST00000385004.1	ENST00000487099.7_5	chr9	127455988	127456077	MIR181B2	+	miRNA	chr9	127279553	127533590	NR6A1	-	protein_coding	89	opposite	8123_ID	chr9	127455989	127456077	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
2158	ENST00000385083.1	ENST00000370314.9_4	chrX	151562883	151562964	MIR105-2	-	miRNA	chrX	151334705	151619787	GABRA3	-	protein_coding	81	same	7960_ID	chrX	151562884	151562964	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
2207	ENST00000385222.1	ENST00000370314.9_4	chrX	151560690	151560771	MIR105-1	-	miRNA	chrX	151334705	151619787	GABRA3	-	protein_coding	81	same	7959_ID	chrX	151560691	151560771	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
2209	ENST00000385227.1	ENST00000447388.7_2	chr1	41222955	41223044	MIR30C1	+	miRNA	chr1	41157380	41237275	NFYC	+	protein_coding	89	same	8228_ID	chr1	41222956	41223044	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
2266	ENST00000386745.1	ENST00000465618.5_3	chr22	39709823	39709916	SNORD83B	-	snoRNA	chr22	39708888	39716394	RPL3	-	processed_transcript	93	same	12452_ID	chr22	39709824	39709916	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
2267	ENST00000386747.1	ENST00000465618.5_3	chr22	39711217	39711312	SNORD83A	-	snoRNA	chr22	39708888	39716394	RPL3	-	processed_transcript	95	same	12451_ID	chr22	39711218	39711312	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
2310	ENST00000390228.1	ENST00000370314.9_4	chrX	151561892	151562001	MIR767	-	miRNA	chrX	151334705	151619787	GABRA3	-	protein_coding	109	same	9086_ID	chrX	151561893	151562001	109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
2319	ENST00000390673.2_3	ENST00000536668.2_4	chr12	11174217	11175219	TAS2R19	-	protein_coding	chr12	10998447	11324197	AC018630.4	-	nonsense_mediated_decay	1002	same	12604_ID	chr12	11174218	11175219	1002	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
2322	ENST00000390675.2_3	ENST00000536668.2_4	chr12	11182985	11184006	TAS2R31	-	protein_coding	chr12	10998447	11324197	AC018630.4	-	nonsense_mediated_decay	1021	same	12613_ID	chr12	11182986	11184006	1021	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
2324	ENST00000390677.2_3	ENST00000536668.2_4	chr12	11060524	11062161	TAS2R13	-	protein_coding	chr12	10998447	11324197	AC018630.4	-	nonsense_mediated_decay	1637	same	12600_ID	chr12	11060525	11062161	1637	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
2396	ENST00000391042.1	ENST00000464873.5_4	chr3	127860717	127860820	RNU6-823P	-	snRNA	chr3	127783627	127872757	RUVBL1	-	protein_coding	103	same	11531_ID	chr3	127860718	127860820	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
2397	ENST00000391043.1	ENST00000641304.1_1	chr12	9776717	9776824	RNU6-700P	-	snRNA	chr12	9601093	9810988	AC092821.3	+	lncRNA	107	opposite	11439_ID	chr12	9776718	9776824	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
2418	ENST00000391108.1	ENST00000605860.5_2	chr2	158842300	158842406	RNU6-932P	-	snRNA	chr2	158733213	158992666	UPP2	+	protein_coding	106	opposite	11618_ID	chr2	158842301	158842406	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
2419	ENST00000391111.1	ENST00000369847.4_6	chr10	105072192	105072325	RNU11-3P	-	snRNA	chr10	105062552	105110897	PCGF6	-	protein_coding	133	same	10614_ID	chr10	105072193	105072325	133	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
2501	ENST00000396400.4_2	ENST00000536668.2_4	chr12	11081834	11087444	PRH2	+	protein_coding	chr12	10998447	11324197	AC018630.4	-	nonsense_mediated_decay	5610	opposite	9628_ID	chr12	11081835	11087444	5610	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
2520	ENST00000397640.6_2	ENST00000567351.5_4	chr17	73975320	73996667	TEN1	+	protein_coding	chr17	73975311	74002079	TEN1-CDK3	+	retained_intron	21347	same	12650_ID	chr17	73975321	73996667	21347	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	9
2567	ENST00000401157.1	ENST00000392872.8_3	chr12	104378888	104378982	AC078819.1	+	miRNA	chr12	104359649	104382652	TDG	+	protein_coding	94	same	2589_ID	chr12	104378889	104378982	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
2660	ENST00000408115.1	ENST00000265997.5_5	chr10	93963985	93964063	CPEB3_ribozyme	-	misc_RNA	chr10	93806448	94050835	CPEB3	-	protein_coding	78	same	6699_ID	chr10	93963986	93964063	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
2714	ENST00000408276.1	ENST00000420587.5_1	chr1	68649200	68649293	MIR1262	-	miRNA	chr1	68297985	68668670	GNG12-AS1	+	lncRNA	93	opposite	8019_ID	chr1	68649201	68649293	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
2728	ENST00000408313.1	ENST00000410066.7_5	chr2	180725562	180725635	MIR1258	-	miRNA	chr2	180306708	180726339	ZNF385B	-	protein_coding	73	same	8010_ID	chr2	180725563	180725635	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
2744	ENST00000408345.2	ENST00000279873.12_5	chr10	63686694	63686777	AC067742.1	-	miRNA	chr10	63661457	63856703	ARID5B	+	protein_coding	83	opposite	2374_ID	chr10	63686695	63686777	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
2797	ENST00000408483.1	ENST00000309469.9_2	chr19	10662797	10662880	MIR1238	+	miRNA	chr19	10654579	10664094	ATG4D	+	protein_coding	83	same	7996_ID	chr19	10662798	10662880	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
2835	ENST00000408564.2	ENST00000420613.7_4	chr12	49048164	49048301	SNORA34	-	snoRNA	chr12	49046993	49076021	KANSL2	-	protein_coding	137	same	12168_ID	chr12	49048165	49048301	137	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
2842	ENST00000408583.1	ENST00000496391.5_2	chr7	102046188	102046302	MIR548O	-	miRNA	chr7	102004343	102067123	PRKRIP1	+	protein_coding	114	opposite	8911_ID	chr7	102046189	102046302	114	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
2849	ENST00000408597.1	ENST00000606978.5_1	chr2	66268383	66268524	AC074391.2	+	miRNA	chr2	65663844	66299755	AC007389.1	+	lncRNA	141	same	2580_ID	chr2	66268384	66268524	141	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
2863	ENST00000408631.2	ENST00000468877.2_1	chr7	137753287	137753375	AC024082.1	-	miRNA	chr7	137687069	137801612	AKR1D1	+	processed_transcript	88	opposite	2001_ID	chr7	137753288	137753375	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
2883	ENST00000408671.1	ENST00000336156.10_5	chr22	45596834	45596900	MIR1249	-	miRNA	chr22	45588124	45636775	KIAA0930	-	protein_coding	66	same	8000_ID	chr22	45596835	45596900	66	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
2885	ENST00000408672.1	ENST00000519104.5_1	chr6	114598548	114598642	AL136446.1	-	miRNA	chr6	114290864	114661902	HDAC2-AS2	+	lncRNA	94	opposite	4913_ID	chr6	114598549	114598642	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
2900	ENST00000408708.1	ENST00000620693.4_1	chr6	34438566	34438706	BX255972.1	-	miRNA	chr6	34433837	34502998	PACSIN1	+	protein_coding	140	opposite	6450_ID	chr6	34438567	34438706	140	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
3027	ENST00000410188.1	ENST00000536534.7_4	chr1	242297573	242297683	RNA5SP81	+	rRNA	chr1	242246287	242687999	PLD5	-	protein_coding	110	opposite	10526_ID	chr1	242297574	242297683	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
3029	ENST00000410226.1	ENST00000351513.7_4	chr8	105437586	105437666	AP003471.2	+	miRNA	chr8	105391658	105479283	DPYS	-	protein_coding	80	opposite	6261_ID	chr8	105437587	105437666	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
3059	ENST00000410371.1	ENST00000289292.11_3	chrX	50392640	50392740	RNU6-935P	+	snRNA	chrX	50334646	50557302	SHROOM4	-	protein_coding	100	opposite	11620_ID	chrX	50392641	50392740	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
3066	ENST00000410397.1	ENST00000632624.2_4	chr19	223157	223261	RNU6-1076P	-	snRNA	chr19	211251	246501	LINC01002	-	retained_intron	104	same	10812_ID	chr19	223158	223261	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
3094	ENST00000410472.1	ENST00000259056.5_2	chr2	158155318	158155670	RN7SKP281	-	misc_RNA	chr2	158114216	158175003	GALNT5	+	protein_coding	352	opposite	9875_ID	chr2	158155319	158155670	352	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
3112	ENST00000410556.1	ENST00000276603.10_2	chr8	73931179	73931279	RNU6-285P	-	snRNA	chr8	73921098	73960358	TERF1	+	protein_coding	100	opposite	11127_ID	chr8	73931180	73931279	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
3117	ENST00000410582.1	ENST00000468877.2_1	chr7	137775999	137776061	RN7SKP223	+	misc_RNA	chr7	137687069	137801612	AKR1D1	+	processed_transcript	62	same	9832_ID	chr7	137776000	137776061	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
3124	ENST00000410613.1	ENST00000255559.7_4	chr17	70710521	70710610	AC080037.1	-	miRNA	chr17	70642087	71088832	SLC39A11	-	protein_coding	89	same	2700_ID	chr17	70710522	70710610	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
3136	ENST00000410683.1	ENST00000642114.1_1	chr3	70300793	70300896	AC134025.1	-	miRNA	chr3	70048996	70439010	SAMMSON	+	lncRNA	103	opposite	4122_ID	chr3	70300794	70300896	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
3138	ENST00000410695.1	ENST00000464873.5_4	chr3	127793915	127794092	RNU2-37P	-	snRNA	chr3	127783627	127872757	RUVBL1	-	protein_coding	177	same	10634_ID	chr3	127793916	127794092	177	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
3187	ENST00000410957.1	ENST00000260126.9_5	chr8	70612458	70612730	RN7SKP29	+	misc_RNA	chr8	70579280	70747213	SLCO5A1	-	protein_coding	272	opposite	9882_ID	chr8	70612459	70612730	272	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
3351	ENST00000413199.1_3	ENST00000495075.5_3	chr3	138760943	138763734	PRR23C	-	protein_coding	chr3	138724647	139075888	MRPS22	+	protein_coding	2791	opposite	9652_ID	chr3	138760944	138763734	2791	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
3392	ENST00000414286.1_3	ENST00000378078.5_2	chr9	35752988	35756610	MSMP	-	processed_transcript	chr9	35749283	35758582	RGP1	+	protein_coding	3624	opposite	9177_ID	chr9	35752989	35756610	3622	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
3451	ENST00000415479.1_1	ENST00000445174.5_3	chr2	216582765	216584147	LINC01614	+	lncRNA	chr2	216476285	216708259	LINC00607	-	lncRNA	1382	opposite	7659_ID	chr2	216582766	216584147	1382	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
3545	ENST00000418282.2_1	ENST00000495075.5_3	chr3	138823026	138844013	BPESC1	+	lncRNA	chr3	138724647	139075888	MRPS22	+	protein_coding	20987	same	6430_ID	chr3	138823027	138844013	20987	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
3595	ENST00000419667.2_3	ENST00000251296.4_2	chr1	18493422	18505840	IGSF21-AS1	-	lncRNA	chr1	18434291	18704977	IGSF21	+	protein_coding	12418	opposite	7343_ID	chr1	18493423	18505840	12418	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
3621	ENST00000420243.2_4	ENST00000518318.7_4	chr7	39019969	39053151	POU6F2-AS2	-	lncRNA	chr7	39017508	39508200	POU6F2	+	protein_coding	33182	opposite	9607_ID	chr7	39019970	39053151	33182	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
3634	ENST00000420724.1_3	ENST00000606978.5_1	chr2	65816699	65867311	AC007389.2	-	lncRNA	chr2	65663844	66299755	AC007389.1	+	lncRNA	50612	opposite	561_ID	chr2	65816700	65867311	50612	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
3644	ENST00000420917.1_3	ENST00000374878.5_3	chrX	62890075	62891382	ARHGEF9-IT1	-	lncRNA	chrX	62854846	63005426	ARHGEF9	-	protein_coding	1307	same	6341_ID	chrX	62890076	62891382	1307	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
3674	ENST00000421697.2_2	ENST00000381312.6_4	chr10	1568831	1599179	ADARB2-AS1	+	lncRNA	chr10	1223252	1779719	ADARB2	-	protein_coding	30348	opposite	4352_ID	chr10	1568832	1599179	30348	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
3682	ENST00000421878.2_1	ENST00000536534.7_4	chr1	242366856	242374129	AL591686.1	+	lncRNA	chr1	242246287	242687999	PLD5	-	protein_coding	7273	opposite	5794_ID	chr1	242366857	242374129	7273	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
3713	ENST00000422548.1_4	ENST00000636459.1_3	chr1	168370720	168376512	AL022100.2	-	lncRNA	chr1	168370711	168464923	AL023755.1	-	lncRNA	5792	same	4471_ID	chr1	168370721	168376512	5792	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	9	9
3745	ENST00000423276.1_1	ENST00000352483.3_3	chr21	43159532	43161468	AP001615.1	+	lncRNA	chr21	43159528	43187249	RIPK4	-	protein_coding	1936	opposite	6151_ID	chr21	43159533	43161468	1936	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
3806	ENST00000424995.2_3	ENST00000371079.6_3	chr1	64570153	64636980	ROR1-AS1	-	lncRNA	chr1	64239687	64647181	ROR1	+	protein_coding	76964	opposite	11872_ID	chr1	64570154	64636980	66827	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	9
3813	ENST00000425124.1	ENST00000412204.2	chr1	143188827	143189695	RP11-782C8.3	+	lincRNA	chr1	143118704	143211070	RP11-782C8.2	-	lincRNA	868	opposite	11935_ID	chr1	143188828	143189695	868	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	9
3828	ENST00000425499.2_3	ENST00000378078.5_2	chr9	35756708	35757937	AL133410.2	-	lncRNA	chr9	35749283	35758582	RGP1	+	protein_coding	1229	opposite	4855_ID	chr9	35756709	35757937	1229	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
3831	ENST00000425559.1_6	ENST00000444294.7_3	chr1	231319843	231323373	TRIM67-AS1	-	lncRNA	chr1	231297857	231357302	TRIM67	+	protein_coding	3530	opposite	12786_ID	chr1	231319844	231323373	3530	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
3847	ENST00000426157.1_3	ENST00000373603.5_1	chr9	127021528	127023435	AL162724.2	-	lncRNA	chr9	127019884	127115586	NEK6	+	protein_coding	1907	opposite	5220_ID	chr9	127021529	127023435	1907	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
3865	ENST00000427035.1_4	ENST00000456353.5_3	chr10	80760240	80763560	AL356753.1	-	lncRNA	chr10	80703084	80827652	ZMIZ1-AS1	-	lncRNA	3320	same	5400_ID	chr10	80760241	80763560	3320	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
3866	ENST00000427046.1_1	ENST00000263702.11_6	chr1	29550444	29551328	AL590729.1	+	lncRNA	chr1	29519168	29557446	MECR	-	protein_coding	884	opposite	5783_ID	chr1	29550445	29551328	884	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
3869	ENST00000427273.1_3	ENST00000357716.9_3	chr3	7561824	7602020	GRM7-AS1	-	lncRNA	chr3	6902801	7783220	GRM7	+	protein_coding	40593	opposite	7184_ID	chr3	7561825	7602020	40196	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
3877	ENST00000427748.1_3	ENST00000357716.9_3	chr3	6934318	6935709	GRM7-AS2	-	lncRNA	chr3	6902801	7783220	GRM7	+	protein_coding	1391	opposite	7185_ID	chr3	6934319	6935709	1391	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
3904	ENST00000428573.1_1	ENST00000367268.5_4	chr1	202573395	202574421	AC104463.2	+	lncRNA	chr1	202559723	202679582	SYT2	-	protein_coding	1026	opposite	3542_ID	chr1	202573396	202574421	1026	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	9
3913	ENST00000428769.1_2	ENST00000353224.10_4	chr20	9556254	9558336	AL353612.1	+	lncRNA	chr20	9518016	9819724	PAK5	-	protein_coding	2082	opposite	5243_ID	chr20	9556255	9558336	2082	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
3926	ENST00000429139.1_1	ENST00000487099.7_5	chr9	127420745	127460910	MIR181A2HG	+	lncRNA	chr9	127279553	127533590	NR6A1	-	protein_coding	40165	opposite	8121_ID	chr9	127420746	127460910	40165	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
3964	ENST00000430143.1_3	ENST00000546109.5_3	chr1	31805913	31819646	AL451070.1	-	lncRNA	chr1	31769828	31837800	ZCCHC17	+	protein_coding	13733	opposite	5669_ID	chr1	31805914	31819646	13733	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	9
3988	ENST00000430643.1_3	ENST00000359942.8_3	chr1	46160355	46162747	AL604028.1	-	lncRNA	chr1	46159995	46216322	IPP	-	protein_coding	2392	same	5836_ID	chr1	46160356	46162747	2392	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
4024	ENST00000431827.1_3	ENST00000373960.4_2	chr2	220289792	220290906	AC053503.3	-	lncRNA	chr2	220283098	220291456	DES	+	protein_coding	1114	opposite	2321_ID	chr2	220289793	220290906	1114	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	9
4031	ENST00000432032.1_1	ENST00000326010.10_2	chr22	24912475	24914354	AP000355.1	+	lncRNA	chr22	24891299	24924358	UPB1	+	protein_coding	1879	same	5981_ID	chr22	24912476	24914354	1879	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
4034	ENST00000432047.4_4	ENST00000323460.10_2	chr3	196639516	196641450	AC016949.1	+	lncRNA	chr3	196594790	196661585	SENP5	+	protein_coding	1934	same	1574_ID	chr3	196639517	196641450	1934	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
4066	ENST00000432987.1_3	ENST00000381312.6_4	chr10	1403195	1403832	AL513304.1	-	lncRNA	chr10	1223252	1779719	ADARB2	-	protein_coding	637	same	5708_ID	chr10	1403196	1403832	637	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
4152	ENST00000435323.5_2	ENST00000673740.1_2	chr21	33784744	33887699	EVA1C	+	nonsense_mediated_decay	chr21	33774819	33976502	CFAP298-TCP10L	-	nonsense_mediated_decay	103394	opposite	6942_ID	chr21	33784745	33887699	102955	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	9
4154	ENST00000435356.2_1	ENST00000308508.5_4	chr15	75970888	75973093	AC105020.1	+	lncRNA	chr15	75966662	76005189	CSPG4	-	protein_coding	2205	opposite	3584_ID	chr15	75970889	75973093	2205	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
4175	ENST00000436028.1_1	ENST00000580241.5_1	chr17	27339882	27343530	AC024619.1	+	lncRNA	chr17	27277530	27383701	PIPOX	+	processed_transcript	3648	same	2030_ID	chr17	27339883	27343530	3648	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
4190	ENST00000436416.1_1	ENST00000369851.7_3	chr1	110138846	110140403	AL355310.1	+	lncRNA	chr1	110091236	110142817	GNAI3	+	protein_coding	1557	same	5326_ID	chr1	110138847	110140403	1557	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
4198	ENST00000436530.1_3	ENST00000648066.1_1	chr14	54066549	54080744	AL163953.1	-	lncRNA	chr14	53684672	54252824	AL365295.1	+	lncRNA	14195	opposite	5230_ID	chr14	54066550	54080744	14195	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
4217	ENST00000437097.1_1	ENST00000394063.5_4	chr9	128329857	128335302	AL162584.1	+	lncRNA	chr9	128199672	128469513	MAPKAP1	-	protein_coding	5445	opposite	5208_ID	chr9	128329858	128335302	5445	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
4227	ENST00000437213.2_1	ENST00000429490.5_3	chr10	52232573	52234006	AL117341.1	+	lncRNA	chr10	52065345	52383737	SGMS1	-	protein_coding	1433	opposite	4729_ID	chr10	52232574	52234006	1433	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
4235	ENST00000437461.1_1	ENST00000373603.5_1	chr9	127025154	127028088	AL162724.1	+	lncRNA	chr9	127019884	127115586	NEK6	+	protein_coding	2934	same	5219_ID	chr9	127025155	127028088	2934	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
4289	ENST00000439185.1_1	ENST00000605860.5_2	chr2	158984468	158990500	UPP2-IT1	+	lncRNA	chr2	158733213	158992666	UPP2	+	protein_coding	6032	same	12852_ID	chr2	158984469	158990500	6032	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
4433	ENST00000443092.2_1	ENST00000423156.2_4	chr13	23993109	24003008	SACS-AS1	+	lncRNA	chr13	23902971	24007879	SACS	-	protein_coding	9899	opposite	11986_ID	chr13	23993110	24003008	9899	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
4437	ENST00000443196.1_3	ENST00000616789.4_1	chr19	36158849	36164193	UPK1A-AS1	-	lncRNA	chr19	36157417	36169385	UPK1A	+	protein_coding	5344	opposite	12848_ID	chr19	36158850	36164193	5344	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	9
4505	ENST00000445540.1_3	ENST00000377047.9_2	chr13	94470676	94488397	GPC6-AS2	-	lncRNA	chr13	93879059	95060274	GPC6	+	protein_coding	17721	opposite	7153_ID	chr13	94470677	94488397	17721	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	9
4507	ENST00000445631.1_1	ENST00000657742.1_3	chr9	2541096	2541635	AL353614.1	+	lncRNA	chr9	2421604	2622373	VLDLR-AS1	-	lncRNA	539	opposite	5245_ID	chr9	2541097	2541635	539	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
4584	ENST00000447643.1_3	ENST00000652520.1_2	chr7	44043644	44047465	AC004951.1	-	lncRNA	chr7	44037495	44048457	SPDYE1	+	protein_coding	3821	opposite	205_ID	chr7	44043645	44047465	3821	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	9
4593	ENST00000447899.1_3	ENST00000361897.10_5	chr1	162286641	162287584	AL512785.1	-	lncRNA	chr1	162039480	162340265	NOS1AP	+	protein_coding	943	opposite	5698_ID	chr1	162286642	162287584	943	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
4635	ENST00000449140.2_1	ENST00000656229.1_3	chr1	63715590	63717442	AC096543.2	+	lncRNA	chr1	63624760	63782943	LINC00466	-	lncRNA	1852	opposite	3272_ID	chr1	63715591	63717442	1852	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
4673	ENST00000450473.1_1	ENST00000448484.5_5	chr20	52556698	52559047	AC005220.1	+	lncRNA	chr20	52553315	52645239	BCAS1	-	protein_coding	2349	opposite	252_ID	chr20	52556699	52559047	2349	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	9
4716	ENST00000451575.6_1	ENST00000380753.8_5	chr10	5037679	5039566	AL391427.1	+	lncRNA	chr10	5029591	5046215	AKR1C2	-	protein_coding	1893	opposite	5580_ID	chr10	5037680	5039566	1887	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	9
4728	ENST00000451697.1_3	ENST00000440973.5_1	chr6	152134410	152135314	AL356311.1	-	lncRNA	chr6	152011630	152424409	ESR1	+	protein_coding	904	opposite	5383_ID	chr6	152134411	152135314	904	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
4732	ENST00000451760.1_3	ENST00000444180.3_1	chr10	88769541	88775539	AL136982.2	-	lncRNA	chr10	88753188	88784489	AL136982.6	+	lncRNA	5998	opposite	4924_ID	chr10	88769542	88775539	5998	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
4735	ENST00000451816.2_3	ENST00000541819.6_3	chr15	26902176	26903910	AC011196.1	-	lncRNA	chr15	26788698	27184686	GABRB3	-	protein_coding	1734	same	1179_ID	chr15	26902177	26903910	1734	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
4738	ENST00000451856.1_1	ENST00000369747.8_4	chr6	83642319	83648396	AL355613.1	+	lncRNA	chr6	83602108	83775560	UBE3D	-	protein_coding	6077	opposite	5350_ID	chr6	83642320	83648396	6077	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
4769	ENST00000452785.2_1	ENST00000540385.2_4	chr1	46600202	46604753	AL358075.2	+	lncRNA	chr1	46509332	46642160	P3R3URF-PIK3R3	-	protein_coding	4551	opposite	5440_ID	chr1	46600203	46604753	4551	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
4805	ENST00000453870.1_3	ENST00000373068.6_7	chr9	130853247	130856736	AL360268.1	-	lncRNA	chr9	130830479	130871523	SLC25A25	+	protein_coding	3489	opposite	5530_ID	chr9	130853248	130856736	3489	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
4820	ENST00000454203.1_1	ENST00000272746.9_3	chr2	175439954	175452454	AC010894.3	+	lncRNA	chr2	175425497	175547627	WIPF1	-	protein_coding	12500	opposite	1157_ID	chr2	175439955	175452454	12500	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
4829	ENST00000454411.1_1	ENST00000367604.6_4	chr6	143109259	143115223	AL023584.2	+	lncRNA	chr6	143072614	143267502	HIVEP2	-	protein_coding	5964	opposite	4492_ID	chr6	143109260	143115223	5964	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
4843	ENST00000454977.1_3	ENST00000398659.8_4	chr2	3302111	3305236	EIPR1-IT1	-	lncRNA	chr2	3192695	3381601	EIPR1	-	protein_coding	3125	same	6891_ID	chr2	3302112	3305236	3125	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
4879	ENST00000455966.2_3	ENST00000650360.1_1	chr1	22350482	22352541	LINC01635	-	lncRNA	chr1	22310098	22357110	AL590556.3	+	lncRNA	2059	opposite	7664_ID	chr1	22350483	22352541	2059	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	8	9
4914	ENST00000456740.1_3	ENST00000327813.9_2	chr22	29495028	29507671	AL021393.1	-	lncRNA	chr22	29469105	29564321	KREMEN1	+	protein_coding	12643	opposite	4446_ID	chr22	29495029	29507671	12643	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
4928	ENST00000457106.1_1	ENST00000342310.7_4	chr1	165179863	165182327	LMX1A-AS2	+	lncRNA	chr1	165171103	165325952	LMX1A	-	protein_coding	2464	opposite	7840_ID	chr1	165179864	165182327	2464	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	9
5041	ENST00000459066.1	ENST00000397899.7_5	chr2	99457137	99457199	RNU7-46P	-	snRNA	chr2	99410308	99552688	CRACDL	-	protein_coding	62	same	11784_ID	chr2	99457138	99457199	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
5050	ENST00000459121.1	ENST00000429490.5_3	chr10	52350411	52350472	RNU7-107P	-	snRNA	chr10	52065345	52383737	SGMS1	-	protein_coding	61	same	11696_ID	chr10	52350412	52350472	61	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
5071	ENST00000459222.1	ENST00000628545.1_4	chr1	54154421	54154485	RNU7-95P	-	snRNA	chr1	53971914	54203779	GLIS1	-	protein_coding	64	same	11821_ID	chr1	54154422	54154485	64	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
5081	ENST00000459279.1	ENST00000263666.9_4	chr3	73643090	73643153	RNU7-119P	-	snRNA	chr3	73431581	73674092	PDZRN3	-	protein_coding	63	same	11704_ID	chr3	73643091	73643153	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
5110	ENST00000459460.1	ENST00000309955.8_3	chr2	202006626	202006689	RNU7-45P	+	snRNA	chr2	201980886	202041410	CFLAR	+	protein_coding	63	same	11782_ID	chr2	202006627	202006689	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
5129	ENST00000459546.1	ENST00000309469.9_2	chr19	10661708	10661768	RNU7-140P	-	snRNA	chr19	10654579	10664094	ATG4D	+	protein_coding	60	opposite	11724_ID	chr19	10661709	10661768	60	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
5289	ENST00000469842.2	ENST00000530378.5_3	chr11	16598397	16598682	RN7SL188P	+	misc_RNA	chr11	16285994	16760190	SOX6	-	nonsense_mediated_decay	285	opposite	10005_ID	chr11	16598398	16598682	285	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
5300	ENST00000470590.1	ENST00000428254.6_2	chr20	25635231	25635517	RN7SL594P	-	misc_RNA	chr20	25604792	25669668	ZNF337-AS1	+	lncRNA	286	opposite	10292_ID	chr20	25635232	25635517	286	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
5321	ENST00000471648.2	ENST00000393939.6_4	chr17	39886380	39886657	RN7SL399P	-	misc_RNA	chr17	39877064	39890896	HAP1	-	protein_coding	277	same	10157_ID	chr17	39886381	39886657	277	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
5342	ENST00000473031.2	ENST00000352241.9_3	chr3	69818639	69818928	RN7SL418P	-	misc_RNA	chr3	69788614	70017483	MITF	+	protein_coding	289	opposite	10168_ID	chr3	69818640	69818928	289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
5353	ENST00000473434.1_1	ENST00000295902.11_5	chr3	64173219	64186641	PRICKLE2-AS3	+	lncRNA	chr3	64079546	64431083	PRICKLE2	-	protein_coding	13422	opposite	9630_ID	chr3	64173220	64186641	13422	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	9
5369	ENST00000474091.2	ENST00000371621.5_2	chr20	49174220	49174535	RN7SL672P	-	misc_RNA	chr20	49126919	49201778	PTPN1	+	protein_coding	315	opposite	10356_ID	chr20	49174221	49174535	315	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
5389	ENST00000475999.2	ENST00000487099.7_5	chr9	127369437	127369735	RN7SL302P	+	misc_RNA	chr9	127279553	127533590	NR6A1	-	protein_coding	298	opposite	10090_ID	chr9	127369438	127369735	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
5390	ENST00000476021.1_3	ENST00000383699.8_3	chr3	86041332	86077157	CADM2-AS1	-	lncRNA	chr3	85008139	86123579	CADM2	+	protein_coding	35825	opposite	6536_ID	chr3	86041333	86077157	35825	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
5396	ENST00000476341.2	ENST00000314992.9_6	chr15	41484164	41484463	RN7SL497P	-	misc_RNA	chr15	41474922	41522895	EXD1	-	protein_coding	299	same	10227_ID	chr15	41484165	41484463	299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
5411	ENST00000477764.2	ENST00000619992.4_1	chr7	142995608	142995905	RN7SL481P	+	misc_RNA	chr7	142985307	143004788	CASP2	+	protein_coding	297	same	10213_ID	chr7	142995609	142995905	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
5436	ENST00000478953.1_3	ENST00000370649.3_1	chr10	99374309	99393257	MORN4	-	protein_coding	chr10	99344130	99433667	AL355315.1	+	protein_coding	18948	opposite	9154_ID	chr10	99374310	99393257	18948	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
5439	ENST00000479087.2	ENST00000619992.4_1	chr7	142987707	142988004	RN7SL535P	+	misc_RNA	chr7	142985307	143004788	CASP2	+	protein_coding	297	same	10257_ID	chr7	142987708	142988004	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
5481	ENST00000482631.2	ENST00000394235.6_5	chr4	140021530	140021810	RN7SL382P	+	misc_RNA	chr4	139978373	140098372	ELF2	-	protein_coding	280	opposite	10145_ID	chr4	140021531	140021810	280	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
5483	ENST00000482644.2	ENST00000405342.5_5	chr7	33085411	33085702	RN7SL505P	-	misc_RNA	chr7	33053725	33102409	NT5C3A	-	protein_coding	291	same	10237_ID	chr7	33085412	33085702	291	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
5521	ENST00000485218.1_1	ENST00000464873.5_4	chr3	127794652	127797899	RUVBL1-AS1	+	lncRNA	chr3	127783627	127872757	RUVBL1	-	protein_coding	3247	opposite	11982_ID	chr3	127794653	127797899	3247	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
5564	ENST00000488416.2	ENST00000394063.5_4	chr9	128275182	128275486	RN7SL30P	-	misc_RNA	chr9	128199672	128469513	MAPKAP1	-	protein_coding	304	same	10096_ID	chr9	128275183	128275486	304	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
5585	ENST00000490073.2	ENST00000549190.5_1	chr12	42636016	42636316	RN7SL10P	+	misc_RNA	chr12	42632248	42835749	PPHLN1	+	protein_coding	300	same	9945_ID	chr12	42636017	42636316	300	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
5592	ENST00000490342.2	ENST00000327171.7_3	chr15	49491098	49491391	RN7SL307P	-	misc_RNA	chr15	49447961	49624079	GALK2	+	protein_coding	293	opposite	10094_ID	chr15	49491099	49491391	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
5616	ENST00000492123.2	ENST00000606978.5_1	chr2	65772536	65772830	RN7SL635P	-	misc_RNA	chr2	65663844	66299755	AC007389.1	+	lncRNA	294	opposite	10325_ID	chr2	65772537	65772830	294	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
5677	ENST00000496499.2	ENST00000395443.7_4	chr3	49120665	49120963	RN7SL182P	+	misc_RNA	chr3	49067139	49131504	QRICH1	-	protein_coding	298	opposite	10000_ID	chr3	49120666	49120963	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
5721	ENST00000499202.2_1	ENST00000336604.8_6	chr12	6652669	6654097	AC006064.1	+	lncRNA	chr12	6648693	6665237	IFFO1	-	protein_coding	1428	opposite	410_ID	chr12	6652670	6654097	1428	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
5792	ENST00000503723.1_1	ENST00000282369.7_4	chr5	114484460	114485341	TRIM36-IT1	-	lncRNA	chr5	114460458	114515856	TRIM36	-	protein_coding	881	same	12781_ID	chr5	114484461	114485341	881	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
5795	ENST00000503815.1_3	ENST00000652661.1_1	chr4	18489684	18491131	AC093871.1	-	lncRNA	chr4	18420284	18890285	AC093898.1	+	lncRNA	1447	opposite	3253_ID	chr4	18489685	18491131	1447	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
5797	ENST00000503860.1_3	ENST00000341029.9_1	chr4	76955842	76962568	CXCL11	-	protein_coding	chr4	76932352	77033955	ART3	+	protein_coding	7734	opposite	6744_ID	chr4	76955843	76962568	6726	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
5809	ENST00000504210.1_1	ENST00000635546.1_3	chr12	54556922	54562379	AC023794.1	+	lncRNA	chr12	54515062	54582792	SMUG1	-	nonsense_mediated_decay	5457	opposite	1966_ID	chr12	54556923	54562379	5457	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	9
5866	ENST00000505921.1_3	ENST00000504198.5_4	chr5	146293769	146299069	PPP2R2B-IT1	-	lncRNA	chr5	145969073	146461054	PPP2R2B	-	protein_coding	5300	same	9619_ID	chr5	146293770	146299069	5300	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
5899	ENST00000506868.1_3	ENST00000536668.2_4	chr12	11138511	11139511	TAS2R50	-	protein_coding	chr12	10998447	11324197	AC018630.4	-	nonsense_mediated_decay	1000	same	12625_ID	chr12	11138512	11139511	1000	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
5913	ENST00000507143.1_3	ENST00000510658.5_1	chr5	121705456	121719263	AC119150.1	-	lncRNA	chr5	121647385	121799649	SNCAIP	+	nonsense_mediated_decay	13807	opposite	3949_ID	chr5	121705457	121719263	13807	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
5935	ENST00000507924.1_1	ENST00000508835.5_4	chr3	125803169	125814192	AC079848.1	+	lncRNA	chr3	125725698	125820400	SLC41A3	-	protein_coding	11691	opposite	2682_ID	chr3	125803170	125814192	11023	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
5948	ENST00000508263.1_1	ENST00000508835.5_4	chr3	125775765	125777071	AC117422.1	+	lncRNA	chr3	125725698	125820400	SLC41A3	-	protein_coding	12225	opposite	3928_ID	chr3	125775766	125777071	1306	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
6010	ENST00000510512.2_4	ENST00000651409.1_1	chr5	27406636	27436528	AC113355.1	-	lncRNA	chr5	27217820	27496511	PURPL	+	lncRNA	29892	opposite	3850_ID	chr5	27406637	27436528	29892	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	9
6024	ENST00000510967.1_3	ENST00000652009.1_3	chr4	132948329	132949589	AC096711.1	-	lncRNA	chr4	132899639	133266776	AC093916.1	-	lncRNA	1260	same	3290_ID	chr4	132948330	132949589	1260	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	9
6068	ENST00000512105.1_3	ENST00000510658.5_1	chr5	121656985	121659053	AC113349.1	-	lncRNA	chr5	121647385	121799649	SNCAIP	+	nonsense_mediated_decay	2068	opposite	3849_ID	chr5	121656986	121659053	2068	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
6083	ENST00000512428.1_3	ENST00000656249.1_3	chr4	108857186	108862411	AC096564.1	-	lncRNA	chr4	108784823	108899955	CYP2U1-AS1	-	lncRNA	5225	same	3276_ID	chr4	108857187	108862411	5225	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
6116	ENST00000513576.1_3	ENST00000264312.12_3	chr4	48854024	48862220	OCIAD1-AS1	-	lncRNA	chr4	48833104	48863832	OCIAD1	+	protein_coding	8196	opposite	9323_ID	chr4	48854025	48862220	8196	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	9
6159	ENST00000514843.1_1	ENST00000344721.8_5	chr4	149067621	149130031	AC069272.1	+	lncRNA	chr4	148999912	149365850	NR3C2	-	protein_coding	62410	opposite	2479_ID	chr4	149067622	149130031	62410	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	9
6163	ENST00000514884.1_1	ENST00000505916.5_3	chr4	186291878	186312082	AC112722.1	+	lncRNA	chr4	186288217	186317053	LRP2BP	-	protein_coding	20204	opposite	3832_ID	chr4	186291879	186312082	20204	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
6175	ENST00000515436.3_3	ENST00000655930.1_3	chr4	38619885	38621058	AC021860.1	-	lncRNA	chr4	38604058	38665852	KLF3-AS1	-	lncRNA	1173	same	1807_ID	chr4	38619886	38621058	1173	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
6186	ENST00000515683.6_5	ENST00000639454.1_3	chr4	100257653	100273903	ADH1C	-	protein_coding	chr4	100228999	100273917	ADH1B	-	protein_coding	16250	same	4357_ID	chr4	100257654	100273903	16250	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	9
6280	ENST00000516141.1	ENST00000429490.5_3	chr10	52345309	52345463	RMRPP4	-	misc_RNA	chr10	52065345	52383737	SGMS1	-	protein_coding	154	same	9758_ID	chr10	52345310	52345463	154	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
6295	ENST00000516171.1	ENST00000605860.5_2	chr2	158769283	158769397	RNU6-436P	+	snRNA	chr2	158733213	158992666	UPP2	+	protein_coding	114	same	11239_ID	chr2	158769284	158769397	114	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
6300	ENST00000516185.1	ENST00000019317.8_1	chr18	9518116	9518258	RNU2-27P	-	snRNA	chr18	9475006	9538112	RALBP1	+	protein_coding	142	opposite	10625_ID	chr18	9518117	9518258	142	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
6310	ENST00000516217.1	ENST00000618043.4_1	chr16	68318125	68318221	RNU6-1262P	-	snRNA	chr16	68298418	68335726	SLC7A6	+	protein_coding	96	opposite	10956_ID	chr16	68318126	68318221	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
6333	ENST00000516275.1	ENST00000536534.7_4	chr1	242351948	242352091	RN7SKP12	-	misc_RNA	chr1	242246287	242687999	PLD5	-	protein_coding	143	same	9774_ID	chr1	242351949	242352091	143	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
6372	ENST00000516396.1	ENST00000370314.9_4	chrX	151419043	151419148	RNU6-764P	-	snRNA	chrX	151334705	151619787	GABRA3	-	protein_coding	105	same	11484_ID	chrX	151419044	151419148	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
6388	ENST00000516448.1	ENST00000666871.1_1	chr3	181686246	181686469	RN7SKP265	+	misc_RNA	chr3	181670177	181753432	LINC01206	+	lncRNA	223	same	9864_ID	chr3	181686247	181686469	223	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
6514	ENST00000516817.1	ENST00000660862.1_3	chr3	106726414	106726517	RNU6-1308P	+	snRNA	chr3	106349315	106959510	LINC00882	-	lncRNA	103	opposite	10997_ID	chr3	106726415	106726517	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
6554	ENST00000516941.1	ENST00000263168.4_2	chr1	113177340	113177406	RNU7-70P	-	snRNA	chr1	113162453	113214238	CAPZA1	+	protein_coding	66	opposite	11800_ID	chr1	113177341	113177406	66	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
6556	ENST00000516944.1	ENST00000530725.6_4	chr8	61397740	61397799	RNU6-1202P	-	snRNA	chr8	61202486	61429354	LINC01301	-	lncRNA	59	same	10906_ID	chr8	61397741	61397799	59	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
6574	ENST00000516984.1	ENST00000394409.7_4	chr5	145965661	145965763	RNA5SP196	-	rRNA	chr5	145960708	146258205	PPP2R2B	-	protein_coding	102	same	10511_ID	chr5	145965662	145965763	102	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	9
6596	ENST00000517045.1	ENST00000595396.2_3	chr13	46824076	46824348	RN7SKP5	+	misc_RNA	chr13	46786077	46851501	LRRC63	+	protein_coding	272	same	9900_ID	chr13	46824077	46824348	272	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
6696	ENST00000517270.1	ENST00000361171.8_2	chr9	129170319	129170689	NRON	-	misc_RNA	chr9	129089107	129269319	MVB12B	+	protein_coding	370	opposite	9307_ID	chr9	129170320	129170689	370	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
6705	ENST00000517286.1	ENST00000536668.2_4	chr12	11315698	11315763	RNU6-676P	+	snRNA	chr12	10998447	11324197	AC018630.4	-	nonsense_mediated_decay	65	opposite	11426_ID	chr12	11315699	11315763	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
6725	ENST00000517735.1_1	ENST00000354914.8_4	chr8	27761997	27767827	AC069113.2	+	lncRNA	chr8	27727399	27850190	SCARA5	-	protein_coding	5830	opposite	2467_ID	chr8	27761998	27767827	5830	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	9
6755	ENST00000518520.1_1	ENST00000517878.6_3	chr8	142264663	142266916	AC011676.2	+	lncRNA	chr8	142217272	142318387	SLC45A4	-	protein_coding	2253	opposite	1279_ID	chr8	142264664	142266916	2253	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
6766	ENST00000518639.1_1	ENST00000522927.5_3	chr8	125500750	125503884	AC090198.1	+	lncRNA	chr8	125500725	125551319	TATDN1	-	nonsense_mediated_decay	3134	opposite	2879_ID	chr8	125500751	125503884	3134	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	9
6820	ENST00000520705.1_3	ENST00000517913.5_1	chr5	156131068	156166823	AC025434.1	-	lncRNA	chr5	155297353	156185066	SGCD	+	protein_coding	35755	opposite	2088_ID	chr5	156131069	156166823	35755	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
6838	ENST00000521055.1_1	ENST00000649038.1_3	chr8	16461763	16522388	AC011586.1	+	lncRNA	chr8	16456266	16550744	AC011586.2	-	lncRNA	60625	opposite	1267_ID	chr8	16461764	16522388	60625	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	9
6852	ENST00000521685.5_1	ENST00000647843.1_1	chr8	72067691	72116458	AC022858.1	+	lncRNA	chr8	71581603	72140864	AC015687.1	+	lncRNA	48770	same	1908_ID	chr8	72067692	72116458	48767	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	9
6860	ENST00000521984.1_3	ENST00000274545.10_2	chr5	161114352	161116414	AC091944.1	-	lncRNA	chr5	161112726	161129598	GABRA6	+	protein_coding	2062	opposite	3022_ID	chr5	161114353	161116414	2062	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	9
6961	ENST00000525706.1_1	ENST00000392668.8_5	chr11	128396036	128400284	ETS1-AS1	+	lncRNA	chr11	128328659	128457453	ETS1	-	protein_coding	4248	opposite	6938_ID	chr11	128396037	128400284	4248	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
6973	ENST00000526310.1_3	ENST00000282441.10_3	chr11	102100581	102101653	AP000942.2	-	lncRNA	chr11	101981177	102104155	YAP1	+	protein_coding	1072	opposite	6058_ID	chr11	102100582	102101653	1072	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
7033	ENST00000527922.1	ENST00000602626.2_4	chr8	11410732	11411716	RP11-148O21.3	-	antisense	chr8	11409996	11422203	AC022239.1	-	lncRNA	984	same	11881_ID	chr8	11410733	11411716	984	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	9
7058	ENST00000528869.1_3	ENST00000263398.11_2	chr11	35231889	35236532	CD44-AS1	-	lncRNA	chr11	35160717	35253949	CD44	+	protein_coding	4643	opposite	6595_ID	chr11	35231890	35236532	4643	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	9
7070	ENST00000529377.1_1	ENST00000276826.5_4	chr8	145809423	145811872	AC084125.3	+	lncRNA	chr8	145754562	145831201	ARHGAP39	-	protein_coding	19182	opposite	2738_ID	chr8	145809424	145811872	2449	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
7140	ENST00000531678.1_4	ENST00000536668.2_4	chr12	11243885	11244912	TAS2R43	-	protein_coding	chr12	10998447	11324197	AC018630.4	-	nonsense_mediated_decay	1027	same	12619_ID	chr12	11243886	11244912	1027	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
7163	ENST00000532524.1_3	ENST00000227155.9_2	chr11	44627719	44629651	AC010768.2	-	lncRNA	chr11	44587212	44641908	CD82	+	protein_coding	1932	opposite	1146_ID	chr11	44627720	44629651	1932	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
7182	ENST00000533344.1_1	ENST00000260126.9_5	chr8	70625624	70631957	AC091047.1	+	lncRNA	chr8	70579280	70747213	SLCO5A1	-	protein_coding	6333	opposite	2969_ID	chr8	70625625	70631957	6333	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
7186	ENST00000533467.1_3	ENST00000536668.2_4	chr12	11213963	11214893	TAS2R46	-	protein_coding	chr12	10998447	11324197	AC018630.4	-	nonsense_mediated_decay	930	same	12622_ID	chr12	11213964	11214893	930	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
7244	ENST00000536855.1_1	ENST00000064778.8_4	chr11	73116341	73121727	AP000763.3	+	lncRNA	chr11	73111531	73309234	FAM168A	-	protein_coding	5386	opposite	6023_ID	chr11	73116342	73121727	5386	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	9
7282	ENST00000538986.1_2	ENST00000536668.2_4	chr12	11149093	11150474	TAS2R20	-	protein_coding	chr12	10998447	11324197	AC018630.4	-	nonsense_mediated_decay	1381	same	12606_ID	chr12	11149094	11150474	1381	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
7286	ENST00000539313.1_3	ENST00000536719.5_4	chr11	18529154	18530367	AC027544.2	-	lncRNA	chr11	18489882	18548498	TSG101	-	protein_coding	1213	same	2214_ID	chr11	18529155	18530367	1213	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
7295	ENST00000539585.1_2	ENST00000536668.2_4	chr12	11285556	11287243	TAS2R30	-	protein_coding	chr12	10998447	11324197	AC018630.4	-	nonsense_mediated_decay	1687	same	12611_ID	chr12	11285557	11287243	1687	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
7310	ENST00000540410.1_3	ENST00000256996.9_2	chr11	47241768	47243302	AC018410.1	-	lncRNA	chr11	47236524	47260768	DDB2	+	protein_coding	1534	opposite	1616_ID	chr11	47241769	47243302	1534	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
7336	ENST00000542578.1_1	ENST00000422113.7_4	chr12	129693145	129697207	TMEM132D-AS2	+	lncRNA	chr12	129556270	130388570	TMEM132D	-	protein_coding	4062	opposite	12716_ID	chr12	129693146	129697207	4062	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	9
7339	ENST00000542821.1_3	ENST00000261653.10_4	chr12	131295365	131297167	AC073912.2	-	lncRNA	chr12	131274144	131323811	STX2	-	protein_coding	1802	same	2556_ID	chr12	131295366	131297167	1802	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
7361	ENST00000543969.1_3	ENST00000536668.2_4	chr12	11318688	11323952	AC134349.1	-	lncRNA	chr12	10998447	11324197	AC018630.4	-	nonsense_mediated_decay	5264	same	4125_ID	chr12	11318689	11323952	5264	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
7371	ENST00000544369.5_1	ENST00000410011.5_3	chr2	128403438	128410212	GPR17	+	protein_coding	chr2	128396002	128439360	LIMS2	-	protein_coding	6775	opposite	7157_ID	chr2	128403439	128410212	6774	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
7401	ENST00000546078.1_3	ENST00000452611.6_1	chr12	3571883	3572752	AC005908.2	-	lncRNA	chr12	3490514	3702348	PRMT8	+	protein_coding	869	opposite	380_ID	chr12	3571884	3572752	869	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
7405	ENST00000546264.1_1	ENST00000261653.10_4	chr12	131295150	131296983	AC073912.1	+	lncRNA	chr12	131274144	131323811	STX2	-	protein_coding	1833	opposite	2555_ID	chr12	131295151	131296983	1833	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
7416	ENST00000546686.1_3	ENST00000331817.6_2	chr12	52638831	52641232	KRT7-AS	-	lncRNA	chr12	52627026	52642705	KRT7	+	protein_coding	2401	opposite	7471_ID	chr12	52638832	52641232	2401	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	9
7435	ENST00000547168.5_3	ENST00000402685.7_2	chr12	41803268	41867312	AC090531.1	-	lncRNA	chr12	41582121	41968547	PDZRN4	+	protein_coding	64044	opposite	2906_ID	chr12	41803269	41867312	64044	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
7442	ENST00000547533.1_1	ENST00000341809.8_4	chr12	53086388	53090572	AC055716.3	+	lncRNA	chr12	53083409	53097308	KRT77	-	protein_coding	4184	opposite	2327_ID	chr12	53086389	53090572	4184	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	9
7589	ENST00000553919.1_1	ENST00000615808.5_2	chr15	27667526	27673484	AC104002.2	+	lncRNA	chr15	27216327	27787130	GABRG3	+	protein_coding	5958	same	3499_ID	chr15	27667527	27673484	5958	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
7612	ENST00000554475.1_1	ENST00000298355.7_3	chr14	51555674	51558006	AL591770.1	+	lncRNA	chr14	51441979	51562779	TRIM9	-	protein_coding	2332	opposite	5800_ID	chr14	51555675	51558006	2332	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
7616	ENST00000554595.2_3	ENST00000331299.6_5	chr14	37566266	37567768	AL079304.1	-	lncRNA	chr14	37147125	37641811	SLC25A21	-	protein_coding	1502	same	4673_ID	chr14	37566267	37567768	1502	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
7634	ENST00000555297.1_1	ENST00000667030.1_1	chr15	93800426	93803704	AC112693.1	+	lncRNA	chr15	93774910	94084434	AC091078.1	+	lncRNA	29126	same	3830_ID	chr15	93800427	93803704	3278	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
7695	ENST00000557025.1_3	ENST00000615808.5_2	chr15	27663941	27665881	AC104002.1	-	lncRNA	chr15	27216327	27787130	GABRG3	+	protein_coding	1940	opposite	3498_ID	chr15	27663942	27665881	1940	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
7699	ENST00000557174.1_1	ENST00000358127.9_4	chr9	36856551	36861372	AL450267.1	+	lncRNA	chr9	36833265	37034265	PAX5	-	protein_coding	4821	opposite	5652_ID	chr9	36856552	36861372	4821	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
7718	ENST00000557761.1_1	ENST00000331299.6_5	chr14	37257848	37276368	AL162464.2	+	lncRNA	chr14	37147125	37641811	SLC25A21	-	protein_coding	18520	opposite	5205_ID	chr14	37257849	37276368	18520	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
7744	ENST00000558292.1_1	ENST00000287701.15_4	chr8	28807192	28813472	HMBOX1-IT1	+	lncRNA	chr8	28747911	28910779	HMBOX1	+	protein_coding	6280	same	7244_ID	chr8	28807193	28813472	6280	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
7769	ENST00000558785.1_1	ENST00000335449.11_4	chr15	51659573	51661307	AC020891.1	+	lncRNA	chr15	51633851	51700197	GLDN	+	protein_coding	1734	same	1737_ID	chr15	51659574	51661307	1734	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
7781	ENST00000558994.1_1	ENST00000249700.9_2	chr15	52044681	52048672	AC026770.1	+	lncRNA	chr15	52043793	52108560	TMOD2	+	protein_coding	3991	same	2170_ID	chr15	52044682	52048672	3991	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
7783	ENST00000559034.1_3	ENST00000299957.11_2	chr15	44679517	44682649	AC090519.1	-	lncRNA	chr15	44580916	44707956	GOLM2	+	protein_coding	3132	opposite	2905_ID	chr15	44679518	44682649	3132	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
7804	ENST00000559672.2_1	ENST00000396402.6_4	chr15	51608037	51614193	AC020891.2	+	lncRNA	chr15	51500253	51630793	CYP19A1	-	protein_coding	6156	opposite	1738_ID	chr15	51608038	51614193	6156	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
7834	ENST00000560324.1_3	ENST00000674405.1_2	chr15	45333913	45350905	AC091117.2	-	lncRNA	chr15	45315365	45369370	SORD	+	nonsense_mediated_decay	16992	opposite	2978_ID	chr15	45333914	45350905	16992	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	9
7863	ENST00000560967.1_3	ENST00000674405.1_2	chr15	45365689	45366246	AC091117.1	-	lncRNA	chr15	45315365	45369370	SORD	+	nonsense_mediated_decay	557	opposite	2977_ID	chr15	45365690	45366246	557	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
7911	ENST00000562203.1_3	ENST00000563357.1_1	chr16	90171502	90172724	AC133919.1	-	lncRNA	chr16	90168678	90204401	FAM157C	+	lncRNA	1222	opposite	4119_ID	chr16	90171503	90172724	1222	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
7957	ENST00000562921.6_4	ENST00000661087.1_1	chr16	79749116	79804463	MAFTRR	-	lncRNA	chr16	79709944	79841820	LINC01229	+	lncRNA	55432	opposite	7904_ID	chr16	79749117	79804463	55347	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	9
8030	ENST00000564407.2_1	ENST00000667056.1_3	chr2	187219296	187221500	AC017071.1	-	lncRNA	chr2	186898343	187287159	LINC01473	-	lncRNA	2204	same	1605_ID	chr2	187219297	187221500	2204	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
8118	ENST00000566143.2_1	ENST00000562272.5_1	chr16	23698369	23699010	AC008870.3	-	lncRNA	chr16	23688976	23701687	PLK1	+	retained_intron	641	opposite	820_ID	chr16	23698370	23699010	641	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	9
8120	ENST00000566170.1_1	ENST00000397350.6_1	chr6	13614342	13615387	AL441883.1	-	lncRNA	chr6	13574760	13615390	SIRT5	+	protein_coding	1045	opposite	5605_ID	chr6	13614343	13615387	1045	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
8121	ENST00000566190.1_1	ENST00000360688.3_3	chr16	30118995	30121862	AC012645.2	+	lncRNA	chr16	30116130	30124858	GDPD3	-	retained_intron	2867	opposite	1419_ID	chr16	30118996	30121862	2867	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	9
8181	ENST00000567381.1_1	ENST00000262493.12_5	chr16	56226525	56228430	DKFZP434H168	-	lncRNA	chr16	56225400	56391356	GNAO1	+	protein_coding	1905	opposite	6808_ID	chr16	56226526	56228430	1905	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
8201	ENST00000567953.1_1	ENST00000615808.5_2	chr15	27607455	27611544	AC144833.1	+	lncRNA	chr15	27216327	27787130	GABRG3	+	protein_coding	4089	same	4229_ID	chr15	27607456	27611544	4089	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
8253	ENST00000569088.1_3	ENST00000346183.8_3	chr16	68246303	68255574	AC020978.3	-	lncRNA	chr16	68119272	68263162	NFATC3	+	protein_coding	9271	opposite	1768_ID	chr16	68246304	68255574	9271	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
8282	ENST00000569940.2_3	ENST00000268459.6_3	chr16	50585734	50587851	AC007608.2	-	lncRNA	chr16	50582306	50683160	NKD1	+	protein_coding	2117	opposite	616_ID	chr16	50585735	50587851	2117	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
8306	ENST00000570501.5_1	ENST00000323434.12_3	chr17	171182	172244	AC129507.4	+	lncRNA	chr17	62292	202888	RPH3AL	-	protein_coding	1062	opposite	4052_ID	chr17	171183	172244	1062	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	9
8404	ENST00000575953.1_1	ENST00000346183.8_3	chr16	68233697	68234884	AC020978.6	+	lncRNA	chr16	68119272	68263162	NFATC3	+	protein_coding	1187	same	1771_ID	chr16	68233698	68234884	1187	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
8434	ENST00000576912.1_1	ENST00000335255.10_3	chr17	80560864	80562054	AC124283.1	-	lncRNA	chr17	80477607	80562478	FOXK2	+	protein_coding	1190	opposite	4003_ID	chr17	80560865	80562054	1190	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
8461	ENST00000577308.1	ENST00000421999.8_3	chr3	99683157	99683242	MIR3921	-	miRNA	chr3	99536705	99900576	CMSS1	+	protein_coding	85	opposite	8426_ID	chr3	99683158	99683242	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
8471	ENST00000577370.1	ENST00000319555.8_2	chr16	88535325	88535439	MIR5189	+	miRNA	chr16	88519687	88603439	ZFPM1	+	protein_coding	114	same	8851_ID	chr16	88535326	88535439	114	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
8484	ENST00000577413.1	ENST00000261699.8_3	chr14	50766572	50766664	MIR4504	-	miRNA	chr14	50704280	50778886	L2HGDH	-	protein_coding	92	same	8585_ID	chr14	50766573	50766664	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
8502	ENST00000577546.1_1	ENST00000359872.6_4	chr17	32007595	32007902	AC024614.1	+	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	307	opposite	2027_ID	chr17	32007596	32007902	307	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
8508	ENST00000577581.1	ENST00000361897.10_5	chr1	162126896	162126972	MIR4654	+	miRNA	chr1	162039480	162340265	NOS1AP	+	protein_coding	76	same	8641_ID	chr1	162126897	162126972	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
8510	ENST00000577584.1_1	ENST00000359872.6_4	chr17	32015821	32016193	AC024614.2	+	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	372	opposite	2028_ID	chr17	32015822	32016193	372	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
8543	ENST00000577709.1_1	ENST00000359872.6_4	chr17	32469965	32474066	AC004147.3	+	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	4101	opposite	102_ID	chr17	32469966	32474066	4101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
8551	ENST00000577752.1	ENST00000358127.9_4	chr9	36893458	36893528	MIR4476	-	miRNA	chr9	36833265	37034265	PAX5	-	protein_coding	70	same	8566_ID	chr9	36893459	36893528	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
8568	ENST00000577826.1	ENST00000356140.10_2	chr2	135615389	135615443	MIR5590	+	miRNA	chr2	135596185	135659604	ACMSD	+	protein_coding	54	same	8942_ID	chr2	135615390	135615443	54	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
8603	ENST00000578040.1_3	ENST00000359872.6_4	chr17	31379124	31379885	AC003687.1	-	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	761	same	86_ID	chr17	31379125	31379885	761	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
8743	ENST00000578924.1	ENST00000222812.8_4	chr7	73125646	73125727	MIR4284	+	miRNA	chr7	73113539	73133999	STX1A	-	protein_coding	81	opposite	8479_ID	chr7	73125647	73125727	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
8745	ENST00000578933.1	ENST00000336395.6_2	chr9	35608090	35608156	MIR4667	+	miRNA	chr9	35605258	35610030	TESK1	+	protein_coding	66	same	8656_ID	chr9	35608091	35608156	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
8838	ENST00000579497.1	ENST00000474863.5_3	chr1	222881578	222881873	RN7SL276P	-	misc_RNA	chr1	222841354	222886079	AIDA	-	processed_transcript	295	same	10073_ID	chr1	222881579	222881873	295	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
8850	ENST00000579547.1	ENST00000351513.7_4	chr8	105447680	105447774	AP003471.3	-	miRNA	chr8	105391658	105479283	DPYS	-	protein_coding	94	same	6262_ID	chr8	105447681	105447774	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
8863	ENST00000579628.1	ENST00000327171.7_3	chr15	49461266	49461350	MIR4716	-	miRNA	chr15	49447961	49624079	GALK2	+	protein_coding	84	opposite	8704_ID	chr15	49461267	49461350	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
8881	ENST00000579745.1_3	ENST00000359872.6_4	chr17	31856805	31860779	AA06	-	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	3974	same	3_ID	chr17	31856806	31860779	3974	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
8916	ENST00000579907.1	ENST00000610213.6_5	chr3	53322888	53323142	RN7SL821P	+	misc_RNA	chr3	53317448	53381570	DCP1A	-	protein_coding	254	opposite	10461_ID	chr3	53322889	53323142	254	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
8931	ENST00000579975.1_1	ENST00000359872.6_4	chr17	31907094	31951141	AC011824.2	+	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	58359	opposite	1300_ID	chr17	31907095	31951141	44047	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9021	ENST00000580530.1	ENST00000664519.1_1	chrX	141694645	141694731	AL080272.1	-	miRNA	chrX	141022281	141828367	AL031073.2	+	lncRNA	86	opposite	4676_ID	chrX	141694646	141694731	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
9029	ENST00000580577.1	ENST00000395184.6_2	chr4	86643620	86643686	MIR4451	+	miRNA	chr4	86396302	86923819	ARHGAP24	+	protein_coding	66	same	8551_ID	chr4	86643621	86643686	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
9044	ENST00000580619.1	ENST00000383699.8_3	chr3	85434859	85434942	MIR5688	+	miRNA	chr3	85008139	86123579	CADM2	+	protein_coding	83	same	8959_ID	chr3	85434860	85434942	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9052	ENST00000580658.1_3	ENST00000359872.6_4	chr17	32407900	32409243	AC004147.1	-	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	1343	same	101_ID	chr17	32407901	32409243	1343	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9064	ENST00000580721.1	ENST00000641304.1_1	chr12	9699563	9699633	AC006432.1	+	miRNA	chr12	9601093	9810988	AC092821.3	+	lncRNA	70	same	458_ID	chr12	9699564	9699633	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
9086	ENST00000580835.1	ENST00000606911.7_2	chr1	179869396	179869697	RN7SL230P	+	misc_RNA	chr1	179851419	179889211	TOR1AIP1	+	protein_coding	301	same	10038_ID	chr1	179869397	179869697	301	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
9098	ENST00000580891.1_1	ENST00000019317.8_1	chr18	9506239	9509724	AP005432.1	+	lncRNA	chr18	9475006	9538112	RALBP1	+	protein_coding	3485	same	6301_ID	chr18	9506240	9509724	3485	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9130	ENST00000581061.1	ENST00000371410.5_5	chrX	119058423	119058513	AC002477.1	-	miRNA	chrX	119054634	119077714	NKAP	-	protein_coding	90	same	57_ID	chrX	119058424	119058513	90	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
9152	ENST00000581173.2_1	ENST00000532984.1_5	chr11	117704624	117709657	AP000757.1	+	lncRNA	chr11	117690877	117747382	FXYD6-FXYD2	-	protein_coding	5224	opposite	6021_ID	chr11	117704625	117709657	5033	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
9173	ENST00000581338.1	ENST00000406625.6_5	chr2	54076258	54076342	MIR3682	-	miRNA	chr2	53897429	54087297	ASB3	-	protein_coding	84	same	8386_ID	chr2	54076259	54076342	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9185	ENST00000581392.1	ENST00000497558.5_1	chr13	45576284	45576580	RN7SL49P	+	misc_RNA	chr13	45563754	45607737	GPALPP1	+	nonsense_mediated_decay	296	same	10230_ID	chr13	45576285	45576580	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9228	ENST00000581727.1_1	ENST00000359872.6_4	chr17	32445365	32445901	AC004147.5	-	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	536	same	106_ID	chr17	32445366	32445901	536	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9242	ENST00000581793.1	ENST00000420587.5_1	chr1	68523859	68523945	AL157407.1	+	miRNA	chr1	68297985	68668670	GNG12-AS1	+	lncRNA	86	same	5063_ID	chr1	68523860	68523945	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
9284	ENST00000581964.1_3	ENST00000580241.5_1	chr17	27336816	27338027	AC024619.2	-	lncRNA	chr17	27277530	27383701	PIPOX	+	processed_transcript	1211	opposite	2031_ID	chr17	27336817	27338027	1211	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
9310	ENST00000582120.1_3	ENST00000400256.5_5	chr18	423743	424416	AP000915.2	-	lncRNA	chr18	316736	500701	COLEC12	-	protein_coding	673	same	6052_ID	chr18	423744	424416	673	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
9314	ENST00000582152.1	ENST00000309415.8_2	chr2	109757945	109758044	MIR4265	-	miRNA	chr2	109745660	110262211	SH3RF3	+	protein_coding	99	opposite	8466_ID	chr2	109757946	109758044	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9321	ENST00000582187.1	ENST00000331299.6_5	chr14	37421513	37421596	MIR4503	-	miRNA	chr14	37147125	37641811	SLC25A21	-	protein_coding	83	same	8584_ID	chr14	37421514	37421596	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9334	ENST00000582236.1	ENST00000609943.5_3	chr20	50069441	50069514	MIR3194	-	miRNA	chr20	50005162	50179370	NFATC2	-	protein_coding	73	same	8305_ID	chr20	50069442	50069514	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
9352	ENST00000582318.1	ENST00000341029.9_1	chr4	77016560	77016661	AC112719.1	+	miRNA	chr4	76932352	77033955	ART3	+	protein_coding	101	same	3831_ID	chr4	77016561	77016661	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
9370	ENST00000582398.1	ENST00000518318.7_4	chr7	39333905	39334005	AC092174.1	-	miRNA	chr7	39017508	39508200	POU6F2	+	protein_coding	100	opposite	3069_ID	chr7	39333906	39334005	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
9412	ENST00000582685.1_1	ENST00000359872.6_4	chr17	32303549	32307870	AC024610.1	+	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	106534	opposite	2025_ID	chr17	32303550	32307870	4321	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9436	ENST00000582806.1	ENST00000618282.5_4	chrX	77140873	77141127	RN7SL460P	+	misc_RNA	chrX	77081243	77150932	MAGT1	-	protein_coding	254	opposite	10201_ID	chrX	77140874	77141127	254	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9449	ENST00000582855.1	ENST00000368797.10_5	chr10	127508308	127508391	MIR4484	+	miRNA	chr10	127477154	127511827	UROS	-	protein_coding	83	opposite	8570_ID	chr10	127508309	127508391	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9532	ENST00000583300.1	ENST00000309415.8_2	chr2	109930026	109930081	MIR4266	-	miRNA	chr2	109745660	110262211	SH3RF3	+	protein_coding	55	opposite	8467_ID	chr2	109930027	109930081	55	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9539	ENST00000583374.1	ENST00000406053.5_6	chr2	53878537	53878610	AC008064.1	-	miRNA	chr2	53759809	53992686	ASB3	-	protein_coding	73	same	689_ID	chr2	53878538	53878610	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
9556	ENST00000583479.1	ENST00000545897.5_1	chr1	161196975	161197051	MIR5187	+	miRNA	chr1	161195728	161200534	TOMM40L	+	protein_coding	76	same	8849_ID	chr1	161196976	161197051	76	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	9
9568	ENST00000583532.1	ENST00000358127.9_4	chr9	36864250	36864305	MIR4540	-	miRNA	chr9	36833265	37034265	PAX5	-	protein_coding	55	same	8616_ID	chr9	36864251	36864305	55	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
9575	ENST00000583591.1	ENST00000352241.9_3	chr3	69969275	69969361	AC099326.1	+	miRNA	chr3	69788614	70017483	MITF	+	protein_coding	86	same	3355_ID	chr3	69969276	69969361	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
9582	ENST00000583614.1	ENST00000606978.5_1	chr2	65894389	65894480	AC007389.4	+	miRNA	chr2	65663844	66299755	AC007389.1	+	lncRNA	91	same	564_ID	chr2	65894390	65894480	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
9589	ENST00000583657.1	ENST00000373603.5_1	chr9	127112734	127112810	AL137846.1	-	miRNA	chr9	127019884	127115586	NEK6	+	protein_coding	76	opposite	4959_ID	chr9	127112735	127112810	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
9627	ENST00000583870.1	ENST00000265997.5_5	chr10	93919328	93919429	AL158040.1	+	miRNA	chr10	93806448	94050835	CPEB3	-	protein_coding	101	opposite	5091_ID	chr10	93919329	93919429	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
9632	ENST00000583916.1_1	ENST00000255559.7_4	chr17	70835177	70835857	AC011120.1	+	lncRNA	chr17	70642087	71088832	SLC39A11	-	protein_coding	680	opposite	1177_ID	chr17	70835178	70835857	680	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
9643	ENST00000583959.1	ENST00000289292.11_3	chrX	50388117	50388209	AL121865.1	+	miRNA	chrX	50334646	50557302	SHROOM4	-	protein_coding	92	opposite	4765_ID	chrX	50388118	50388209	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
9683	ENST00000584158.1	ENST00000376259.7_2	chr1	12251769	12251830	MIR4632	+	miRNA	chr1	12227047	12269277	TNFRSF1B	+	protein_coding	61	same	8618_ID	chr1	12251770	12251830	61	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
9699	ENST00000584268.1	ENST00000419482.7_4	chr2	88382037	88382118	MIR4780	-	miRNA	chr2	88367343	88412903	SMYD1	+	protein_coding	81	opposite	8767_ID	chr2	88382038	88382118	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9739	ENST00000584475.1	ENST00000395184.6_2	chr4	86831630	86831696	AC098870.1	-	miRNA	chr4	86396302	86923819	ARHGAP24	+	protein_coding	66	opposite	3349_ID	chr4	86831631	86831696	66	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
9750	ENST00000584535.1	ENST00000518137.6_3	chr17	78393217	78393293	MIR4730	+	miRNA	chr17	78388966	78411886	ENDOV	+	protein_coding	76	same	8719_ID	chr17	78393218	78393293	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
9772	ENST00000584693.1	ENST00000555019.6_5	chr14	94414571	94414648	MIR4506	-	miRNA	chr14	94400511	94442916	ASB2	-	protein_coding	77	same	8587_ID	chr14	94414572	94414648	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
9801	ENST00000584863.1_1	ENST00000359872.6_4	chr17	31954045	31962076	AC011824.1	+	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	8031	opposite	1299_ID	chr17	31954046	31962076	8031	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9848	ENST00000585093.1_1	ENST00000359872.6_4	chr17	31861128	31868358	AC011824.3	+	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	7230	opposite	1301_ID	chr17	31861129	31868358	7230	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9849	ENST00000585099.1	ENST00000481739.2_5	chr9	137271256	137271318	MIR4669	+	miRNA	chr9	137218300	137332431	RXRA	+	protein_coding	62	same	8658_ID	chr9	137271257	137271318	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9897	ENST00000585394.1_3	ENST00000592347.5_4	chr19	29093285	29139210	AC079466.2	-	lncRNA	chr19	28926294	29218587	AC005394.2	-	lncRNA	45925	same	2667_ID	chr19	29093286	29139210	45925	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
9909	ENST00000585742.1_1	ENST00000587296.1_3	chr19	12799735	12800052	AC018761.4	+	lncRNA	chr19	12798866	12807433	FBXW9	-	nonsense_mediated_decay	317	opposite	1663_ID	chr19	12799736	12800052	317	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	9
9958	ENST00000587088.1_3	ENST00000253099.11_4	chr19	10369784	10370721	AC011511.3	-	lncRNA	chr19	10362889	10370731	MRPL4	+	protein_coding	937	opposite	1261_ID	chr19	10369785	10370721	937	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	9
9972	ENST00000587498.1_1	ENST00000255608.9_4	chr19	1989399	1990202	AC005306.1	+	lncRNA	chr19	1985446	2015713	BTBD2	-	protein_coding	970	opposite	273_ID	chr19	1989400	1990202	803	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	9
9973	ENST00000587520.1_1	ENST00000582581.5_3	chr19	29938944	29939287	AC011474.3	+	lncRNA	chr19	29777917	30016659	AC011474.1	-	lncRNA	343	opposite	1243_ID	chr19	29938945	29939287	343	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
9991	ENST00000587961.1_1	ENST00000592347.5_4	chr19	29097594	29106136	AC079466.1	+	lncRNA	chr19	28926294	29218587	AC005394.2	-	lncRNA	8542	opposite	2665_ID	chr19	29097595	29106136	8542	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
9993	ENST00000588104.1_1	ENST00000225276.10_4	chr17	74565873	74567322	AC015802.1	+	lncRNA	chr17	74561458	74581942	ST6GALNAC2	-	protein_coding	1449	opposite	1476_ID	chr17	74565874	74567322	1449	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	9
10018	ENST00000589084.1_3	ENST00000586569.3_3	chr18	60040126	60045363	AC100843.1	-	lncRNA	chr18	59992542	60058521	TNFRSF11A	+	protein_coding	5237	opposite	3438_ID	chr18	60040127	60045363	5237	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
10037	ENST00000589999.1_3	ENST00000592347.5_4	chr19	28982770	29123635	AC005394.1	-	lncRNA	chr19	28926294	29218587	AC005394.2	-	lncRNA	140865	same	294_ID	chr19	28982771	29123635	140865	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
10132	ENST00000592931.1_1	ENST00000592347.5_4	chr19	29000144	29009635	AC005616.1	+	lncRNA	chr19	28926294	29218587	AC005394.2	-	lncRNA	9491	opposite	321_ID	chr19	29000145	29009635	9491	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
10178	ENST00000594558.1_1	ENST00000221418.9_4	chr19	39310805	39313863	AC104534.1	+	lncRNA	chr19	39306061	39322434	ECH1	-	protein_coding	3058	opposite	3548_ID	chr19	39310806	39313863	3058	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
10219	ENST00000596102.1	ENST00000263697.6_4	chr1	28527069	28527419	AL353354.2	+	protein_coding	chr1	28526788	28559540	DNAJC8	-	protein_coding	350	opposite	5237_ID	chr1	28527070	28527419	350	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
10239	ENST00000596596.1_1	ENST00000597960.7_5	chr19	18643717	18646998	AC005387.2	+	lncRNA	chr19	18642560	18654387	FKBP8	-	protein_coding	3281	opposite	291_ID	chr19	18643718	18646998	3281	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	9
10279	ENST00000597541.6_4	ENST00000606978.5_1	chr2	65666971	65683702	AC012370.2	-	lncRNA	chr2	65663844	66299755	AC007389.1	+	lncRNA	16734	opposite	1370_ID	chr2	65666972	65683702	16731	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
10364	ENST00000600169.2_1	ENST00000429519.5_1	chr4	75022227	75024090	AC093677.2	-	lncRNA	chr4	74979890	75107927	MTHFD2L	+	nonsense_mediated_decay	1863	opposite	3236_ID	chr4	75022228	75024090	1863	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
10376	ENST00000600642.1_1	ENST00000342783.5_3	chr13	113819315	113819497	AL137002.1	-	lncRNA	chr13	113812961	113826700	PROZ	+	protein_coding	182	opposite	4933_ID	chr13	113819316	113819497	182	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	9
10394	ENST00000601123.1	ENST00000536668.2_4	chr12	11187086	11187275	AC018630.1	+	protein_coding	chr12	10998447	11324197	AC018630.4	-	nonsense_mediated_decay	189	opposite	1643_ID	chr12	11187087	11187275	189	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
10488	ENST00000602711.1	ENST00000677671.1_1	chr8	11703662	11703900	RP11-589N15.2	-	sense_intronic	chr8	11700032	11726957	CTSB	-	protein_coding	238	same	11919_ID	chr8	11703663	11703900	238	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
10523	ENST00000602919.1_1	ENST00000520515.5_3	chr5	133562100	133563518	AC104109.2	+	lncRNA	chr5	133541304	133706734	AC104109.4	-	retained_intron	1418	opposite	3509_ID	chr5	133562101	133563518	1418	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
10525	ENST00000602946.1_3	ENST00000229239.10_2	chr12	6646959	6647536	AC006064.4	-	lncRNA	chr12	6643682	6647537	GAPDH	+	protein_coding	577	opposite	413_ID	chr12	6646960	6647536	577	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	9
10589	ENST00000604239.1_1	ENST00000605860.5_2	chr2	158774223	158774883	AC091488.1	+	lncRNA	chr2	158733213	158992666	UPP2	+	protein_coding	660	same	2998_ID	chr2	158774224	158774883	660	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
10592	ENST00000604448.1_1	ENST00000512921.4_4	chr4	25222024	25222535	AC104662.1	+	lncRNA	chr4	25162284	25278928	PI4K2B	+	protein_coding	511	same	3564_ID	chr4	25222025	25222535	511	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
10659	ENST00000605985.1_1	ENST00000675257.1_1	chr7	16510808	16510998	AC005014.3	+	lncRNA	chr7	16131120	16542119	CRPPA	-	protein_coding	190	opposite	213_ID	chr7	16510809	16510998	190	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
10671	ENST00000606152.1	ENST00000527849.5_3	chr1	146647180	146649319	RP11-337C18.9	+	antisense	chr1	146646929	146714700	FMO5	-	nonsense_mediated_decay	2139	opposite	11891_ID	chr1	146647181	146649319	2139	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	9
10736	ENST00000606713.1_1	ENST00000606098.1_2	chr3	16386632	16387947	AC090948.3	+	lncRNA	chr3	16306972	16391806	OXNAD1	+	protein_coding	1315	same	2954_ID	chr3	16386633	16387947	1315	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
10781	ENST00000607214.1_1	ENST00000383714.8_5	chr3	58413981	58414542	AC135507.1	+	lncRNA	chr3	58413356	58419584	PDHB	-	protein_coding	561	opposite	4142_ID	chr3	58413982	58414542	561	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	9
10804	ENST00000607363.1_1	ENST00000606098.1_2	chr3	16380814	16381378	AC090948.2	+	lncRNA	chr3	16306972	16391806	OXNAD1	+	protein_coding	564	same	2953_ID	chr3	16380815	16381378	564	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
10817	ENST00000607464.1_1	ENST00000606098.1_2	chr3	16355945	16356494	AC090948.1	+	lncRNA	chr3	16306972	16391806	OXNAD1	+	protein_coding	549	same	2951_ID	chr3	16355946	16356494	549	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
10829	ENST00000607565.1_1	ENST00000406686.8_4	chr6	3311895	3313884	AL445309.1	+	lncRNA	chr6	3269206	3457284	SLC22A23	-	protein_coding	1989	opposite	5621_ID	chr6	3311896	3313884	1989	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
10839	ENST00000607665.1_1	ENST00000276603.10_2	chr8	73955144	73955581	AC022893.3	-	lncRNA	chr8	73921098	73960358	TERF1	+	protein_coding	437	opposite	1912_ID	chr8	73955145	73955581	437	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
10868	ENST00000607943.1_1	ENST00000380909.9_4	chr22	50630152	50630831	AL022328.3	-	lncRNA	chr22	50624341	50638024	TRABD	+	protein_coding	679	opposite	4483_ID	chr22	50630153	50630831	679	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
10880	ENST00000608016.1_3	ENST00000611222.1_2	chr22	50646889	50647971	AL022328.2	-	lncRNA	chr22	50639407	50656044	SELENOO	+	protein_coding	1082	opposite	4482_ID	chr22	50646890	50647971	1082	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	9
10892	ENST00000608131.1_1	ENST00000232564.8_4	chr3	179123235	179123732	AC007620.3	+	lncRNA	chr3	179113875	179169258	GNB4	-	protein_coding	497	opposite	619_ID	chr3	179123236	179123732	497	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
10902	ENST00000608241.1_1	ENST00000536534.7_4	chr1	242310815	242372431	AL591686.2	+	lncRNA	chr1	242246287	242687999	PLD5	-	protein_coding	61900	opposite	5795_ID	chr1	242310816	242372431	61616	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
10923	ENST00000608444.1_1	ENST00000537969.5_2	chr10	74884330	74885163	AC016394.1	-	lncRNA	chr10	74870132	74891586	NUDT13	+	protein_coding	960	opposite	1528_ID	chr10	74884331	74885163	833	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	6	9
10925	ENST00000608472.1_1	ENST00000495075.5_3	chr3	139067865	139068213	AC024933.1	-	lncRNA	chr3	138724647	139075888	MRPS22	+	protein_coding	348	opposite	2038_ID	chr3	139067866	139068213	348	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
10930	ENST00000608665.1_1	ENST00000652570.1_1	chr21	35784497	35784885	AP000322.2	+	lncRNA	chr21	35748355	35789259	SMIM11A	+	nonsense_mediated_decay	388	same	5977_ID	chr21	35784498	35784885	388	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	9
10940	ENST00000608730.1_1	ENST00000633192.1_3	chr7	95045419	95045774	AC005021.1	+	lncRNA	chr7	95034208	95064641	PON2	-	protein_coding	355	opposite	217_ID	chr7	95045420	95045774	355	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	9
11054	ENST00000609957.1_7	ENST00000395211.6_1	chr9	100275425	100280118	AL162385.1	-	lncRNA	chr9	100263461	100364023	TMOD1	+	protein_coding	5131	opposite	5191_ID	chr9	100275426	100280118	4693	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
11065	ENST00000610049.1_1	ENST00000545121.5_1	chr1	111727036	111727683	AL355816.2	-	lncRNA	chr1	111682248	111727724	CEPT1	+	protein_coding	647	opposite	5356_ID	chr1	111727037	111727683	647	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
11080	ENST00000610188.1_2	ENST00000626474.3_5	chr3	72110211	72119084	AC105265.2	+	lncRNA	chr3	72084912	72328654	LINC00877	-	lncRNA	8873	opposite	3608_ID	chr3	72110212	72119084	8873	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	9
11104	ENST00000610486.1_1	ENST00000530611.1_6	chr14	24667638	24668296	AL136295.6	+	lncRNA	chr14	24658362	24682679	AL136295.1	-	protein_coding	658	opposite	4897_ID	chr14	24667639	24668296	658	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
11111	ENST00000610691.1_1	ENST00000360688.3_3	chr16	30122215	30123276	AC012645.4	+	lncRNA	chr16	30116130	30124858	GDPD3	-	retained_intron	1061	opposite	1421_ID	chr16	30122216	30123276	1061	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	9
11133	ENST00000611264.1_1	ENST00000409939.8_4	chr16	30371145	30371657	AC106782.5	+	lncRNA	chr16	30368422	30381815	TBC1D10B	-	protein_coding	512	opposite	3647_ID	chr16	30371146	30371657	512	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	9
11142	ENST00000611460.1_1	ENST00000428254.6_2	chr20	25661416	25661882	AL031673.1	+	lncRNA	chr20	25604792	25669668	ZNF337-AS1	+	lncRNA	466	same	4544_ID	chr20	25661417	25661882	466	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
11167	ENST00000612282.1_1	ENST00000260453.4_4	chr15	56739317	56739895	AC084782.3	+	lncRNA	chr15	56720921	56757335	MNS1	-	protein_coding	578	opposite	2761_ID	chr15	56739318	56739895	578	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
11237	ENST00000613894.3_3	ENST00000652570.1_1	chr21	35771705	35773413	FAM243B	-	protein_coding	chr21	35748355	35789259	SMIM11A	+	nonsense_mediated_decay	1708	opposite	6985_ID	chr21	35771706	35773413	1708	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	4	9
11265	ENST00000614539.1_1	ENST00000652176.1_2	chr12	32505282	32507078	AC026356.2	+	lncRNA	chr12	32259780	32536567	BICD1	+	protein_coding	1796	same	2137_ID	chr12	32505283	32507078	1796	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
11349	ENST00000616512.1_1	ENST00000279101.9_4	chr20	60977291	60980991	AL121832.3	-	lncRNA	chr20	60963687	60982341	CABLES2	-	protein_coding	3700	same	4760_ID	chr20	60977292	60980991	3700	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
11359	ENST00000616791.3_6	ENST00000431442.2_2	chr9	125315502	125317452	OR1N2	+	protein_coding	chr9	125168923	125401957	AL359636.2	+	lncRNA	2062	same	9370_ID	chr9	125315503	125317452	1950	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
11366	ENST00000616896.1_1	ENST00000261647.10_5	chr17	15926636	15926967	AC002553.2	-	lncRNA	chr17	15903137	15932718	TTC19	+	protein_coding	331	opposite	71_ID	chr17	15926637	15926967	331	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
11378	ENST00000617135.1_1	ENST00000359236.10_4	chr12	118504202	118504530	AC131238.1	+	lncRNA	chr12	118501397	118541816	VSIG10	-	protein_coding	328	opposite	4088_ID	chr12	118504203	118504530	328	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	9
11452	ENST00000619226.1_1	ENST00000530611.1_6	chr14	24670817	24672017	AL136295.7	-	lncRNA	chr14	24658362	24682679	AL136295.1	-	protein_coding	1200	same	4898_ID	chr14	24670818	24672017	1200	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
11474	ENST00000619659.1_3	ENST00000431442.2_2	chr9	125288636	125289575	OR1N1	-	protein_coding	chr9	125168923	125401957	AL359636.2	+	lncRNA	939	opposite	9369_ID	chr9	125288637	125289575	939	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
11481	ENST00000619715.1_1	ENST00000534261.3_3	chr19	52142730	52143184	AC018755.4	-	lncRNA	chr19	52115179	52148798	SIGLEC5	-	protein_coding	454	same	1658_ID	chr19	52142731	52143184	454	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
11485	ENST00000619744.1_1	ENST00000652176.1_2	chr12	32262009	32262536	AC048344.4	+	lncRNA	chr12	32259780	32536567	BICD1	+	protein_coding	527	same	2310_ID	chr12	32262010	32262536	527	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
11545	ENST00000621102.1_1	ENST00000308580.12_2	chr15	52125330	52125623	AC090971.5	+	lncRNA	chr15	52121849	52207922	TMOD3	+	protein_coding	293	same	2963_ID	chr15	52125331	52125623	293	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
11551	ENST00000621254.1_1	ENST00000494792.1_4	chr10	126311921	126312648	AL513190.1	+	lncRNA	chr10	126305648	126480296	AC068896.1	-	nonsense_mediated_decay	727	opposite	5704_ID	chr10	126311922	126312648	727	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
11560	ENST00000621405.1_1	ENST00000549190.5_1	chr12	42755068	42755505	AC079684.1	+	lncRNA	chr12	42632248	42835749	PPHLN1	+	protein_coding	437	same	2671_ID	chr12	42755069	42755505	437	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
11568	ENST00000621571.1_2	ENST00000253506.9_2	chr18	77230119	77230940	AC018445.1	-	lncRNA	chr18	77155855	77289325	NFATC1	+	protein_coding	821	opposite	1619_ID	chr18	77230120	77230940	821	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
11580	ENST00000621819.1_1	ENST00000541819.6_3	chr15	26802744	26803084	AC009878.1	-	lncRNA	chr15	26788698	27184686	GABRB3	-	protein_coding	340	same	1001_ID	chr15	26802745	26803084	340	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
11600	ENST00000622091.1_1	ENST00000351513.7_4	chr8	105431739	105433728	AP003471.1	-	lncRNA	chr8	105391658	105479283	DPYS	-	protein_coding	1989	same	6260_ID	chr8	105431740	105433728	1989	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
11621	ENST00000622535.1_1	ENST00000395324.6_5	chr12	48298904	48300648	AC121338.2	+	lncRNA	chr12	48235319	48336831	VDR	-	protein_coding	1744	opposite	3975_ID	chr12	48298905	48300648	1744	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
11627	ENST00000622688.1_1	ENST00000652176.1_2	chr12	32492301	32493658	AC026356.1	+	lncRNA	chr12	32259780	32536567	BICD1	+	protein_coding	1357	same	2136_ID	chr12	32492302	32493658	1357	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
11651	ENST00000623530.1_3	ENST00000431442.2_2	chr9	125390857	125391852	OR1B1	-	protein_coding	chr9	125168923	125401957	AL359636.2	+	lncRNA	995	opposite	9361_ID	chr9	125390858	125391852	995	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
11705	ENST00000624835.2_1	ENST00000677170.1_1	chr2	74423824	74425687	AC073263.2	-	lncRNA	chr2	74413339	74442698	MTHFD2	+	protein_coding	1863	opposite	2515_ID	chr2	74423825	74425687	1863	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
11737	ENST00000626169.2_6	ENST00000606784.5_4	chr6	85397429	85419221	TBX18-AS1	+	lncRNA	chr6	85397090	85473171	TBX18	-	protein_coding	21867	opposite	12638_ID	chr6	85397430	85419221	21792	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	9
11738	ENST00000626175.1_1	ENST00000495075.5_3	chr3	138951833	138952364	PISRT1	+	lncRNA	chr3	138724647	139075888	MRPS22	+	protein_coding	531	same	9565_ID	chr3	138951834	138952364	531	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
11772	ENST00000629214.1_2	ENST00000606978.5_1	chr2	65850405	65855558	AC007389.3	+	lncRNA	chr2	65663844	66299755	AC007389.1	+	lncRNA	5153	same	563_ID	chr2	65850406	65855558	5153	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
11774	ENST00000629393.1_1	ENST00000357505.10_3	chr13	33078642	33083532	N4BP2L2-IT2	-	lncRNA	chr13	33006625	33113022	N4BP2L2	-	protein_coding	4890	same	9217_ID	chr13	33078643	33083532	4890	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	9
11810	ENST00000632982.1_1	ENST00000381312.6_4	chr10	1332212	1335197	AL392083.1	-	lncRNA	chr10	1223252	1779719	ADARB2	-	protein_coding	2985	same	5599_ID	chr10	1332213	1335197	2985	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
11831	ENST00000634873.1_1	ENST00000636471.1_4	chr2	145202414	145208017	AC009951.5	+	lncRNA	chr2	145141647	145277929	ZEB2	-	protein_coding	5603	opposite	1009_ID	chr2	145202415	145208017	5603	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
11876	ENST00000637454.1_3	ENST00000359872.6_4	chr17	32118856	32143780	AC024614.4	-	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	24924	same	2029_ID	chr17	32118857	32143780	24924	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
11915	ENST00000641027.1_4	ENST00000431442.2_2	chr9	125329395	125345663	OR1L8	-	protein_coding	chr9	125168923	125401957	AL359636.2	+	lncRNA	16268	opposite	9368_ID	chr9	125329396	125345663	16268	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
11994	ENST00000643972.1_3	ENST00000328908.9_1	chr6	4714331	4725119	AL356747.1	-	lncRNA	chr6	4706392	4955781	CDYL	+	protein_coding	10788	opposite	5397_ID	chr6	4714332	4725119	10788	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
12004	ENST00000646142.1_3	ENST00000372583.6_5	chr1	42050976	42094487	AC119676.1	-	protein_coding	chr1	41972035	42384593	HIVEP3	-	protein_coding	43511	same	3953_ID	chr1	42050977	42094487	43511	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	9
12067	ENST00000648437.1_5	ENST00000639725.1_3	chr6	34385230	34393846	RPS10	-	protein_coding	chr6	34252663	34393848	RPS10-NUDT3	-	protein_coding	8616	same	11957_ID	chr6	34385231	34393846	8616	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	9
12090	ENST00000648684.1_1	ENST00000401095.8_7	chr1	2684637	2701278	AC242022.2	+	lncRNA	chr1	2567414	2718282	TTC34	-	protein_coding	16641	opposite	4273_ID	chr1	2684638	2701278	16641	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	9
12113	ENST00000649052.1_1	ENST00000546412.2_4	chr14	26385220	26468011	AL132633.1	+	lncRNA	chr14	26116509	26612511	LINC02306	-	lncRNA	82791	opposite	4805_ID	chr14	26385221	26468011	82791	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
12143	ENST00000649580.1_1	ENST00000313005.10_3	chr11	117159168	117164191	BACE1-AS	+	retained_intron	chr11	117155922	117186972	BACE1	-	protein_coding	5119	opposite	6394_ID	chr11	117159169	117164191	5023	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	9
12162	ENST00000650129.1_1	ENST00000263063.9_4	chr10	30598731	30600955	AL353796.2	+	lncRNA	chr10	30598729	30638207	MTPAP	-	protein_coding	2224	opposite	5264_ID	chr10	30598732	30600955	2224	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	9	9
12179	ENST00000650487.1_1	ENST00000308666.4_4	chr12	40005620	40008450	AC121334.3	+	lncRNA	chr12	39943834	40013605	ABCD2	-	protein_coding	2830	opposite	3971_ID	chr12	40005621	40008450	2830	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
12259	ENST00000652216.1_4	ENST00000457658.6_2	chrY	14773239	14775405	AC244213.1	-	lncRNA	chrY	14649584	14820802	USP9Y	+	processed_transcript	2170	opposite	4290_ID	chrY	14773240	14775405	2166	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	9
12326	ENST00000653564.1_3	ENST00000518318.7_4	chr7	39444196	39446178	POU6F2-AS1	-	lncRNA	chr7	39017508	39508200	POU6F2	+	protein_coding	1990	opposite	9606_ID	chr7	39444197	39446178	1982	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
12335	ENST00000653830.1_3	ENST00000641304.1_1	chr12	9799609	9800679	AC010186.1	-	lncRNA	chr12	9601093	9810988	AC092821.3	+	lncRNA	1071	opposite	1031_ID	chr12	9799610	9800679	1070	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
12386	ENST00000655190.1_3	ENST00000492590.6_4	chr3	59794994	59797036	AC093418.1	+	lncRNA	chr3	59733002	61237126	FHIT	-	protein_coding	2042	opposite	3203_ID	chr3	59794995	59797036	2042	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
12443	ENST00000656212.1_3	ENST00000495075.5_3	chr3	139034998	139059712	AC024933.2	-	lncRNA	chr3	138724647	139075888	MRPS22	+	protein_coding	24714	opposite	2039_ID	chr3	139034999	139059712	24714	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
12460	ENST00000656733.1_3	ENST00000660862.1_3	chr3	106764872	106772013	AC117435.1	+	lncRNA	chr3	106349315	106959510	LINC00882	-	lncRNA	7141	opposite	3929_ID	chr3	106764873	106772013	7141	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
12465	ENST00000656840.1_1	ENST00000284694.11_4	chr10	128114498	128149526	AL589787.1	+	lncRNA	chr10	128113577	128210010	C10orf90	-	protein_coding	35028	opposite	5741_ID	chr10	128114499	128149526	35028	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	9
12469	ENST00000656900.1_1	ENST00000357716.9_3	chr3	7283602	7291896	AC066585.1	+	lncRNA	chr3	6902801	7783220	GRM7	+	protein_coding	8294	same	2367_ID	chr3	7283603	7291896	8294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
12487	ENST00000657209.1_1	ENST00000422113.7_4	chr12	130181143	130184667	AC117373.2	+	lncRNA	chr12	129556270	130388570	TMEM132D	-	protein_coding	3524	opposite	3924_ID	chr12	130181144	130184667	3524	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
12527	ENST00000657992.1_2	ENST00000429490.5_3	chr10	52085456	52101345	AC069547.2	+	lncRNA	chr10	52065345	52383737	SGMS1	-	protein_coding	15889	opposite	2493_ID	chr10	52085457	52101345	15889	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
12551	ENST00000658428.1_1	ENST00000371269.9_5	chr1	55340344	55349337	AC096536.3	+	lncRNA	chr1	55315299	55352868	DHCR24	-	protein_coding	8993	opposite	3270_ID	chr1	55340345	55349337	8993	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
12552	ENST00000658475.1_1	ENST00000334133.9_4	chr3	16486046	16489421	AC010727.1	+	lncRNA	chr3	16357351	16555206	RFTN1	-	protein_coding	3375	opposite	1132_ID	chr3	16486047	16489421	3375	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
12587	ENST00000658952.1_1	ENST00000654940.1_3	chr4	117675608	117842948	AC093765.2	+	lncRNA	chr4	117672628	117873855	AC093765.3	-	lncRNA	167340	opposite	3243_ID	chr4	117675609	117842948	167340	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	9
12598	ENST00000659143.1_3	ENST00000517913.5_1	chr5	155446237	155466987	AC011351.1	-	lncRNA	chr5	155297353	156185066	SGCD	+	protein_coding	20750	opposite	1192_ID	chr5	155446238	155466987	20750	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
12604	ENST00000659278.1_3	ENST00000480456.6_3	chr21	27018424	27026983	AP000224.1	-	lncRNA	chr21	27011569	27089874	JAM2	+	protein_coding	8559	opposite	5962_ID	chr21	27018425	27026983	8559	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
12621	ENST00000659672.1_3	ENST00000268058.8_3	chr15	74332530	74335673	AC013486.1	-	lncRNA	chr15	74287056	74340168	PML	+	protein_coding	3143	opposite	1448_ID	chr15	74332531	74335673	3143	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	9
12630	ENST00000659778.1_3	ENST00000589068.5_1	chr18	40229484	40237858	AC084335.1	-	lncRNA	chr18	39766667	40271387	LINC00907	+	lncRNA	8374	opposite	2744_ID	chr18	40229485	40237858	8374	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
12631	ENST00000659958.1_3	ENST00000359872.6_4	chr17	32154717	32311335	AC024610.2	-	lncRNA	chr17	31340104	32484313	ASIC2	-	protein_coding	251402	same	2026_ID	chr17	32154718	32311335	156618	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
12644	ENST00000660116.1_1	ENST00000650631.1_3	chr1	169028813	169031679	AL031726.2	+	lncRNA	chr1	168665111	169072514	AL135926.1	-	lncRNA	2866	opposite	4555_ID	chr1	169028814	169031679	2866	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
12662	ENST00000660679.1_3	ENST00000615808.5_2	chr15	27284124	27406401	GABRG3-AS1	-	lncRNA	chr15	27216327	27787130	GABRG3	+	protein_coding	122342	opposite	7098_ID	chr15	27284125	27406401	122277	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
12697	ENST00000661269.1_3	ENST00000446050.7_2	chr3	167512734	167528869	AC079822.1	-	lncRNA	chr3	167453508	167543357	SERPINI1	+	protein_coding	16135	opposite	2680_ID	chr3	167512735	167528869	16135	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	9
12743	ENST00000662450.1_3	ENST00000637265.1_2	chr1	210160677	210170437	AL022397.1	-	lncRNA	chr1	210111530	210344734	SYT14	+	protein_coding	9760	opposite	4487_ID	chr1	210160678	210170437	9760	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
12802	ENST00000663611.1_3	ENST00000636601.1_1	chr3	140969845	141003148	AC022215.2	-	lncRNA	chr3	140950625	141040564	PXYLP1	+	nonsense_mediated_decay	33303	opposite	1842_ID	chr3	140969846	141003148	33303	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
12863	ENST00000664890.1_1	ENST00000448183.6_3	chr6	11291531	11296457	AL022098.1	+	lncRNA	chr6	11183538	11382547	NEDD9	-	nonsense_mediated_decay	4926	opposite	4470_ID	chr6	11291532	11296457	4926	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	9
12867	ENST00000664978.1_3	ENST00000660862.1_3	chr3	106403234	106410167	AC080097.1	-	lncRNA	chr3	106349315	106959510	LINC00882	-	lncRNA	6933	same	2702_ID	chr3	106403235	106410167	6933	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
12894	ENST00000665427.1_1	ENST00000640003.1_3	chr9	23291541	23293921	AL357614.1	+	lncRNA	chr9	22703514	23438698	AL391117.1	-	lncRNA	2380	opposite	5429_ID	chr9	23291542	23293921	2380	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
12899	ENST00000665639.1_1	ENST00000371518.6_3	chr20	50689223	50713019	AL109984.1	+	lncRNA	chr20	50668201	50808318	ZFP64	-	protein_coding	23796	opposite	4718_ID	chr20	50689224	50713019	23796	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	9
12925	ENST00000666339.1_1	ENST00000382897.2_3	chr18	53693618	53696417	AC009271.2	+	lncRNA	chr18	53670843	53858493	AC006305.1	-	lncRNA	2799	opposite	938_ID	chr18	53693619	53696417	2799	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	9
12956	ENST00000666889.1_4	ENST00000440973.5_1	chr6	152412846	152415144	AL078582.2	-	lncRNA	chr6	152011630	152424409	ESR1	+	protein_coding	2298	opposite	4661_ID	chr6	152412847	152415144	2298	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
12993	ENST00000667767.1_1	ENST00000398056.6_5	chr8	17757992	17765520	AC087273.2	+	lncRNA	chr8	17721888	17767874	FGL1	-	protein_coding	7528	opposite	2790_ID	chr8	17757993	17765520	7528	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
12995	ENST00000667779.1_1	ENST00000456951.5_6	chr7	130353691	130354235	AC234644.2	+	lncRNA	chr7	130353487	130372268	TSGA13	-	protein_coding	544	opposite	4262_ID	chr7	130353692	130354235	544	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	9
13007	ENST00000667941.1_1	ENST00000539924.5_3	chr12	7991509	7996991	AC006517.2	+	lncRNA	chr12	7966667	8043744	SLC2A14	-	protein_coding	5482	opposite	474_ID	chr12	7991510	7996991	5482	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
13098	ENST00000669925.1_1	ENST00000607033.5_3	chr6	134142316	134194060	LINC01312	+	lncRNA	chr6	133823389	134210120	TARID	-	lncRNA	51776	opposite	7630_ID	chr6	134142317	134194060	51744	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
13120	ENST00000670564.1_1	ENST00000425150.2_4	chrX	51068641	51073514	AC233976.2	+	lncRNA	chrX	50933427	51139314	AC233976.1	-	lncRNA	4873	opposite	4258_ID	chrX	51068642	51073514	4873	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	9
13131	ENST00000670834.1_3	ENST00000432459.6_1	chr7	156447945	156452276	RNF32-AS1	-	lncRNA	chr7	156433440	156469818	RNF32	+	protein_coding	5398	opposite	10546_ID	chr7	156447946	156452276	4331	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	9
13184	ENST00000673532.1_3	ENST00000452611.6_1	chr12	3592879	3601985	THCAT155	-	lncRNA	chr12	3490514	3702348	PRMT8	+	protein_coding	9106	opposite	12676_ID	chr12	3592880	3601985	9106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
13189	ENST00000673907.1_2	ENST00000673740.1_2	chr21	33870276	33947803	TCP10L	-	processed_transcript	chr21	33774819	33976502	CFAP298-TCP10L	-	nonsense_mediated_decay	89407	same	12647_ID	chr21	33870277	33947803	77527	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	9
13217	ENST00000677315.1_1	ENST00000374878.5_3	chrX	62974364	62974544	AL451106.1	-	protein_coding	chrX	62854846	63005426	ARHGEF9	-	protein_coding	180	same	5671_ID	chrX	62974365	62974544	180	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
13225	ENST00000679269.1_1	ENST00000549190.5_1	chr12	42705903	42720059	ZCRB1	-	protein_coding	chr12	42632248	42835749	PPHLN1	+	protein_coding	14172	opposite	13008_ID	chr12	42705904	42720059	14156	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
73810	ENST00000360844.6_3	ENST00000429354.3_3	chr19	52145805	52150054	SIGLEC14	-	protein_coding	chr19	52115343	52150142	AC018755.2	-	protein_coding	4249	same	12063_ID	chr19	52145806	52150054	4249	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	9
14391	ENST00000368100.1_4	ENST00000645519.1_3	chr1	159824105	159832447	VSIG8	-	protein_coding	chr1	159804291	159842843	AL590560.2	-	nonsense_mediated_decay	8342	same	12895_ID	chr1	159824106	159832447	8342	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	9
14731	ENST00000370640.5_2	ENST00000370649.3_1	chr10	99349477	99350691	C10orf62	+	protein_coding	chr10	99344130	99433667	AL355315.1	+	protein_coding	1214	same	6465_ID	chr10	99349478	99350691	1214	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
14851	ENST00000371505.5_4	ENST00000505802.1_3	chr6	44246470	44265435	TCTE1	-	protein_coding	chr6	44240930	44346694	AL353588.1	+	nonsense_mediated_decay	18965	opposite	12648_ID	chr6	44246471	44265435	18965	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
15151	ENST00000374114.8_4	ENST00000541176.2_3	chr20	34236846	34252822	RBM12	-	protein_coding	chr20	34220261	34262466	AL109827.1	-	nonsense_mediated_decay	16032	same	9713_ID	chr20	34236847	34252822	15976	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	9
16961	ENST00000383971.1	ENST00000283109.8_4	chr5	96511653	96511817	RNU1-73P	-	snRNA	chr5	96496570	96518951	RIOK2	-	protein_coding	164	same	10598_ID	chr5	96511654	96511817	164	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
24251	ENST00000391118.1	ENST00000398333.7_6	chr15	90429716	90429823	RNU6-1111P	-	snRNA	chr15	90377539	90456114	ARPIN-AP3S2	-	protein_coding	107	same	10838_ID	chr15	90429717	90429823	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
30461	ENST00000410293.1	ENST00000624936.2_3	chr11	152998	153102	RNU6-447P	-	snRNA	chr11	150835	180404	AC240565.2	-	lncRNA	104	same	11253_ID	chr11	152999	153102	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	10
31561	ENST00000410759.1	ENST00000656249.1_3	chr4	108788962	108789066	RNU6-733P	-	snRNA	chr4	108784823	108899955	CYP2U1-AS1	-	lncRNA	104	same	11463_ID	chr4	108788963	108789066	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
32271	ENST00000411150.1	ENST00000280871.9_4	chr12	40200896	40200976	AC121336.1	-	miRNA	chr12	40148826	40499883	SLC2A13	-	protein_coding	80	same	3972_ID	chr12	40200897	40200976	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
44171	ENST00000442449.1_3	ENST00000665046.1_4	chr6	129800759	129802555	AL356124.2	-	lncRNA	chr6	129760629	129897192	AL356124.1	-	lncRNA	1796	same	5370_ID	chr6	129800760	129802555	1796	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
46181	ENST00000448570.1_1	ENST00000640003.1_3	chr9	22767173	22768315	AC017067.1	+	lncRNA	chr9	22703514	23438698	AL391117.1	-	lncRNA	1142	opposite	1603_ID	chr9	22767174	22768315	1142	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
46431	ENST00000449248.1_1	ENST00000429746.2_4	chr11	1781577	1783716	AC068580.3	+	lncRNA	chr11	1773984	1785803	CTSD	-	protein_coding	2139	opposite	2420_ID	chr11	1781578	1783716	2139	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
46681	ENST00000450004.1_1	ENST00000540385.2_4	chr1	46512489	46514040	AL358075.1	+	lncRNA	chr1	46509332	46642160	P3R3URF-PIK3R3	-	protein_coding	1551	opposite	5439_ID	chr1	46512490	46514040	1551	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
52641	ENST00000467868.2	ENST00000504198.5_4	chr5	146035965	146036258	RN7SL791P	-	misc_RNA	chr5	145969073	146461054	PPP2R2B	-	protein_coding	293	same	10434_ID	chr5	146035966	146036258	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
59541	ENST00000508358.1_1	ENST00000500179.1_1	chr4	105478116	105490034	AC004063.1	+	lncRNA	chr4	105412121	105618749	CXXC4-AS1	+	lncRNA	11918	same	95_ID	chr4	105478117	105490034	11918	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
65301	ENST00000516836.1	ENST00000398333.7_6	chr15	90440807	90440869	RNU7-111P	+	snRNA	chr15	90377539	90456114	ARPIN-AP3S2	-	protein_coding	62	opposite	11701_ID	chr15	90440808	90440869	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
69111	ENST00000523422.1_3	ENST00000649416.1_3	chr8	104495650	104513904	AC012213.1	-	lncRNA	chr8	104410885	104514123	AC012213.5	-	protein_coding	18279	same	1348_ID	chr8	104495651	104513904	18254	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
70081	ENST00000527030.1_1	ENST00000361507.5_4	chr11	78099106	78103451	AP003086.2	+	lncRNA	chr11	77926338	78128866	GAB2	-	protein_coding	4345	opposite	6237_ID	chr11	78099107	78103451	4345	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
78251	ENST00000560011.1_3	ENST00000396402.6_4	chr15	51571123	51572212	AC020891.3	-	lncRNA	chr15	51500253	51630793	CYP19A1	-	protein_coding	1089	same	1739_ID	chr15	51571124	51572212	1089	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
79751	ENST00000563151.1_1	ENST00000678015.1_1	chr16	66583182	66585092	AC010542.4	+	lncRNA	chr16	66543345	66586382	TK2	-	protein_coding	1910	opposite	1104_ID	chr16	66583183	66585092	1910	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
84261	ENST00000576454.1_1	ENST00000674888.1_1	chr16	15777146	15778427	AC026401.2	+	lncRNA	chr16	15737467	15826804	NDE1	+	nonsense_mediated_decay	1281	same	2145_ID	chr16	15777147	15778427	1281	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	9
87091	ENST00000578667.1	ENST00000504198.5_4	chr5	146114397	146114467	AC011357.1	+	miRNA	chr5	145969073	146461054	PPP2R2B	-	protein_coding	70	opposite	1195_ID	chr5	146114398	146114467	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
87241	ENST00000578736.1	ENST00000398333.7_6	chr15	90427162	90427262	MIR5009	-	miRNA	chr15	90377539	90456114	ARPIN-AP3S2	-	protein_coding	100	same	8813_ID	chr15	90427163	90427262	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
87301	ENST00000578766.1	ENST00000398333.7_6	chr15	90393868	90393953	MIR5094	-	miRNA	chr15	90377539	90456114	ARPIN-AP3S2	-	protein_coding	85	same	8836_ID	chr15	90393869	90393953	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
94231	ENST00000582691.1	ENST00000396402.6_4	chr15	51534386	51534461	MIR4713	+	miRNA	chr15	51500253	51630793	CYP19A1	-	protein_coding	75	opposite	8700_ID	chr15	51534387	51534461	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
95251	ENST00000583240.1	ENST00000444490.6_3	chr9	95290265	95290340	MIR4670	-	miRNA	chr9	95255835	95298374	ECM2	-	protein_coding	75	same	8660_ID	chr9	95290266	95290340	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
98121	ENST00000584882.1	ENST00000371582.8_4	chr20	49555182	49555269	AL034553.1	+	miRNA	chr20	49551403	49575092	DPM1	-	protein_coding	87	opposite	4595_ID	chr20	49555183	49555269	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
102531	ENST00000596781.1_3	ENST00000244289.9_4	chr19	42928535	42929223	AC011497.1	-	lncRNA	chr19	42905665	42931540	LIPE	-	protein_coding	688	same	1253_ID	chr19	42928536	42929223	688	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	9
103691	ENST00000600090.1_3	ENST00000327374.9_2	chr22	20052074	20053228	AC006547.3	-	lncRNA	chr22	20008632	20054687	TANGO2	+	protein_coding	1154	opposite	480_ID	chr22	20052075	20053228	1154	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	9	9
103751	ENST00000600242.1_1	ENST00000598165.5_4	chr19	44078789	44079770	L34079.3	+	lncRNA	chr19	44056395	44084625	XRCC1	-	protein_coding	981	opposite	7500_ID	chr19	44078790	44079770	981	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
10456	ENST00000602411.1_1	ENST00000383811.8_3	chr3	9977389	9977942	AC018809.1	+	lncRNA	chr3	9975517	9987090	CRELD1	+	protein_coding	553	same	1667_ID	chr3	9977390	9977942	553	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	9
107431	ENST00000606713.1_1	ENST00000334133.9_4	chr3	16386632	16387947	AC090948.3	+	lncRNA	chr3	16357351	16555206	RFTN1	-	protein_coding	1315	opposite	2955_ID	chr3	16386633	16387947	1315	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
108111	ENST00000607363.1_1	ENST00000334133.9_4	chr3	16380814	16381378	AC090948.2	+	lncRNA	chr3	16357351	16555206	RFTN1	-	protein_coding	564	opposite	2952_ID	chr3	16380815	16381378	564	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
109291	ENST00000608430.2_2	ENST00000645519.1_3	chr1	159824659	159837475	AL590560.3	+	lncRNA	chr1	159804291	159842843	AL590560.2	-	nonsense_mediated_decay	12816	opposite	5774_ID	chr1	159824660	159837475	12816	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	9
110671	ENST00000609998.1_1	ENST00000265857.8_3	chr7	919426	926184	AC073957.3	-	lncRNA	chr7	916190	936073	GET4	+	protein_coding	6758	opposite	2560_ID	chr7	919427	926184	6758	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	9
112781	ENST00000614652.1_1	ENST00000379480.9_4	chr13	41803315	41803812	AL354696.1	-	lncRNA	chr13	41790504	41837712	MTRF1	-	protein_coding	497	same	5275_ID	chr13	41803316	41803812	497	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
114181	ENST00000617969.1_2	ENST00000563060.6_3	chr16	30075626	30076146	AC093512.1	-	lncRNA	chr16	30075594	30081735	ALDOA	+	protein_coding	520	opposite	3211_ID	chr16	30075627	30076146	520	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	9
117101	ENST00000624682.1_1	ENST00000674888.1_1	chr16	15795093	15795975	AC026401.3	+	lncRNA	chr16	15737467	15826804	NDE1	+	nonsense_mediated_decay	882	same	2146_ID	chr16	15795094	15795975	882	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	9
125651	ENST00000658498.1_3	ENST00000381312.6_4	chr10	1247345	1254329	AL392083.2	-	lncRNA	chr10	1223252	1779719	ADARB2	-	protein_coding	6984	same	5601_ID	chr10	1247346	1254329	6984	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	9
84832	ENST00000577394.1	ENST00000520515.5_3	chr5	133561447	133561543	MIR3661	+	miRNA	chr5	133541304	133706734	AC104109.4	-	retained_intron	96	opposite	8372_ID	chr5	133561448	133561543	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	9
99791	ENST00000587645.1_3	ENST00000587817.5_3	chr19	37619580	37632542	AC012309.2	-	lncRNA	chr19	37597635	37663628	ZNF585A	-	nonsense_mediated_decay	12962	same	1357_ID	chr19	37619581	37632542	12962	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	9
6	ENST00000039007.5_2	ENST00000465127.1_1	chrX	38211856	38280699	OTC	+	protein_coding	chrX	37208582	38546928	AF241726.1	+	protein_coding	68861	same	9482_ID	chrX	38211857	38280699	68843	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
67	ENST00000237455.5_4	ENST00000604011.5_5	chr2	86830520	86850988	RNF103	-	protein_coding	chr2	86732790	86948245	RNF103-CHMP3	-	protein_coding	20469	same	10538_ID	chr2	86830521	86850988	20468	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	8
144	ENST00000257860.9_2	ENST00000553259.1_3	chr12	49688929	49692469	PRPH	+	protein_coding	chr12	49686413	49718359	AC125611.4	-	lncRNA	5435	opposite	9648_ID	chr12	49688930	49692469	3540	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	8
167	ENST00000263080.3_3	ENST00000541913.5_5	chr17	3379290	3406699	ASPA	+	protein_coding	chr17	3343315	3417146	SPATA22	-	protein_coding	31032	opposite	6357_ID	chr17	3379291	3406699	27409	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
241	ENST00000284240.10_4	ENST00000500970.5_1	chr11	119286185	119293882	THY1	-	protein_coding	chr11	119252519	119397374	USP2-AS1	+	lncRNA	9510	opposite	12691_ID	chr11	119286186	119293882	7697	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
253	ENST00000288350.7_4	ENST00000647779.1_1	chr21	40777769	40817703	LCA5L	-	protein_coding	chr21	40752257	40887433	GET1-SH3BGR	+	protein_coding	39962	opposite	7515_ID	chr21	40777770	40817703	39934	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
304	ENST00000297579.9_1	ENST00000649416.1_3	chr8	104426941	104455681	DCAF13	+	protein_coding	chr8	104410885	104514123	AC012213.5	-	protein_coding	28740	opposite	6770_ID	chr8	104426942	104455681	28740	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
305	ENST00000297875.7_4	ENST00000465127.1_1	chrX	37865805	37988069	SYTL5	+	protein_coding	chrX	37208582	38546928	AF241726.1	+	protein_coding	122267	same	12590_ID	chrX	37865806	37988069	122264	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
343	ENST00000303735.8_4	ENST00000638199.1_1	chr2	165752695	165812035	SLC38A11	-	protein_coding	chr2	165697181	165950627	AC019197.1	+	lncRNA	59340	opposite	12094_ID	chr2	165752696	165812035	59340	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	8
363	ENST00000306503.5_1	ENST00000650611.1_1	chr2	46926090	46990268	SOCS5	+	protein_coding	chr2	46926078	47049943	LINC01118	+	lncRNA	81294	same	12486_ID	chr2	46926091	46990268	64178	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	8
429	ENST00000315099.3_4	ENST00000535334.5_1	chr3	93733208	93747441	STX19	-	protein_coding	chr3	93698982	93774512	ARL13B	+	protein_coding	14233	opposite	12574_ID	chr3	93733209	93747441	14233	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
508	ENST00000325660.3_3	ENST00000544604.7_3	chr22	29420986	29427464	ZNRF3-AS1	-	lncRNA	chr22	29279559	29453476	ZNRF3	+	protein_coding	6478	opposite	13082_ID	chr22	29420987	29427464	6478	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
612	ENST00000338437.7_2	ENST00000561579.6_3	chr16	66878316	66888050	CA7	+	protein_coding	chr16	66851372	66907159	NAE1	-	protein_coding	9740	opposite	6526_ID	chr16	66878317	66888050	9734	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
618	ENST00000339363.7_3	ENST00000465127.1_1	chrX	38128423	38186788	RPGR	-	protein_coding	chrX	37208582	38546928	AF241726.1	+	protein_coding	58382	opposite	11951_ID	chrX	38128424	38186788	58365	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
633	ENST00000340722.8_2	ENST00000553913.2_1	chr14	96152762	96158965	TCL1B	+	protein_coding	chr14	96129592	96158967	AL133467.3	+	lncRNA	6203	same	12646_ID	chr14	96152763	96158965	6203	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	8
636	ENST00000340807.3_3	ENST00000403766.8_2	chr13	99906985	99913998	GPR18	-	protein_coding	chr13	99853107	100038758	UBAC2	+	protein_coding	7031	opposite	7159_ID	chr13	99906986	99913998	7013	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
637	ENST00000341016.5_2	ENST00000465127.1_1	chrX	37850031	37850567	H2AP	+	protein_coding	chrX	37208582	38546928	AF241726.1	+	protein_coding	536	same	7210_ID	chrX	37850032	37850567	536	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
680	ENST00000354541.7_1	ENST00000371837.5_3	chr10	91043521	91051882	AL353751.1	+	lncRNA	chr10	90973325	91174314	LIPA	-	protein_coding	27786	opposite	5260_ID	chr10	91043522	91051882	8361	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
684	ENST00000354852.5_1	ENST00000380259.7_5	chr11	5617954	5665628	TRIM6-TRIM34	+	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	47674	opposite	12785_ID	chr11	5617955	5665628	47674	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	8
708	ENST00000358372.8_3	ENST00000546087.5_5	chr6	160146616	160177351	WTAP	+	protein_coding	chr6	160100150	160183561	SOD2	-	protein_coding	30735	opposite	12915_ID	chr6	160146617	160177351	30735	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
718	ENST00000359440.6_6	ENST00000654210.1_1	chr15	81623428	81666554	TMC3	-	protein_coding	chr15	81616784	81735632	TMC3-AS1	+	lncRNA	43126	opposite	12706_ID	chr15	81623429	81666554	43126	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
778	ENST00000362195.2	ENST00000381750.9_2	chr9	4850290	4850381	MIR101-2	+	miRNA	chr9	4792943	4861066	RCL1	+	protein_coding	91	same	7956_ID	chr9	4850291	4850381	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
889	ENST00000362821.1	ENST00000243903.6_2	chr20	37390170	37390485	RN7SKP173	+	misc_RNA	chr20	37377102	37401163	ACTR5	+	protein_coding	315	same	9804_ID	chr20	37390171	37390485	315	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
894	ENST00000362839.1	ENST00000227349.7_3	chr11	122797741	122797881	RNU4-23P	+	snRNA	chr11	122753466	122834570	JHY	+	protein_coding	140	same	10667_ID	chr11	122797742	122797881	140	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
917	ENST00000362967.1	ENST00000488956.5_3	chr1	182913499	182913625	RNA5SP71	-	rRNA	chr1	182868999	182922660	SHCBP1L	-	processed_transcript	126	same	10525_ID	chr1	182913500	182913625	126	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
939	ENST00000363105.1	ENST00000508278.6_1	chr11	73543426	73543735	RN7SKP243	-	misc_RNA	chr11	73498916	73576178	MRPL48	+	nonsense_mediated_decay	309	opposite	9851_ID	chr11	73543427	73543735	309	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
949	ENST00000363216.1	ENST00000404909.5_3	chr2	55241553	55241657	RNU6-433P	-	snRNA	chr2	55199324	55277964	RTN4	-	protein_coding	104	same	11236_ID	chr2	55241554	55241657	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
990	ENST00000363404.1	ENST00000545712.7_4	chr12	110005779	110005920	RNU4-32P	-	snRNA	chr12	109991519	110011309	MMAB	-	protein_coding	141	same	10676_ID	chr12	110005780	110005920	141	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
993	ENST00000363425.1	ENST00000369063.8_4	chr6	107055590	107055694	RNU6-527P	+	snRNA	chr6	107018645	107077373	RTN4IP1	-	protein_coding	104	opposite	11312_ID	chr6	107055591	107055694	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
1003	ENST00000363484.1	ENST00000654008.1_3	chr20	37062507	37062641	SNORA71D	-	snoRNA	chr20	37048284	37064018	SNHG17	-	lncRNA	134	same	12204_ID	chr20	37062508	37062641	134	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
1046	ENST00000363690.1	ENST00000431926.6_2	chr17	61650602	61650706	RNU6-288P	-	snRNA	chr17	61627842	61671641	DCAF7	+	nonsense_mediated_decay	104	opposite	11130_ID	chr17	61650603	61650706	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
1068	ENST00000363786.1	ENST00000395655.8_4	chr7	45145566	45145698	SNORA5B	-	snoRNA	chr7	45139698	45151646	TBRG4	-	protein_coding	132	same	12189_ID	chr7	45145567	45145698	132	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
1124	ENST00000364087.1	ENST00000653002.1_3	chr6	19642655	19642760	RNU6-801P	-	snRNA	chr6	19323658	19804801	LNC-LBCS	-	lncRNA	105	same	11512_ID	chr6	19642656	19642760	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
1137	ENST00000364140.1	ENST00000651429.1_3	chr2	48444713	48445038	RN7SKP224	+	misc_RNA	chr2	48151319	48541345	AC092650.1	-	lncRNA	325	opposite	9833_ID	chr2	48444714	48445038	325	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
1140	ENST00000364174.1	ENST00000258418.10_2	chr2	231616855	231616962	RNU6-268P	+	snRNA	chr2	231577556	231685790	CAB39	+	protein_coding	107	same	11115_ID	chr2	231616856	231616962	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
1155	ENST00000364292.1	ENST00000408919.7_3	chr3	15381255	15381362	RNU6-454P	+	snRNA	chr3	15297156	15382875	SH3BP5	-	protein_coding	107	opposite	11257_ID	chr3	15381256	15381362	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
1170	ENST00000364361.1	ENST00000361421.2_4	chr8	59726970	59727111	RNU4-50P	-	snRNA	chr8	59717970	60031706	TOX	-	protein_coding	141	same	10689_ID	chr8	59726971	59727111	141	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
1177	ENST00000364403.1	ENST00000650360.1_1	chr1	22337477	22337581	RNU6-776P	+	snRNA	chr1	22310098	22357110	AL590556.3	+	lncRNA	104	same	11494_ID	chr1	22337478	22337581	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
1221	ENST00000364617.1	ENST00000319942.8_2	chr1	76255161	76255233	SNORD45B	+	snoRNA	chr1	76251940	76260771	RABGGTB	+	protein_coding	72	same	12409_ID	chr1	76255162	76255233	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
1225	ENST00000364642.1	ENST00000654008.1_3	chr20	37058312	37058446	SNORA71C	-	snoRNA	chr20	37048284	37064018	SNHG17	-	lncRNA	134	same	12203_ID	chr20	37058313	37058446	134	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
1241	ENST00000364729.1	ENST00000654008.1_3	chr20	37055951	37056085	SNORA71A	-	snoRNA	chr20	37048284	37064018	SNHG17	-	lncRNA	134	same	12201_ID	chr20	37055952	37056085	134	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
1274	ENST00000364882.1	ENST00000654940.1_3	chr4	117760434	117760541	RNU6-119P	+	snRNA	chr4	117672628	117873855	AC093765.3	-	lncRNA	107	opposite	10903_ID	chr4	117760435	117760541	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
1279	ENST00000364902.1	ENST00000395655.8_4	chr7	45144504	45144641	SNORA5C	-	snoRNA	chr7	45139698	45151646	TBRG4	-	protein_coding	137	same	12190_ID	chr7	45144505	45144641	137	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
1283	ENST00000364923.1	ENST00000403766.8_2	chr13	99857961	99858260	RN7SKP9	+	misc_RNA	chr13	99853107	100038758	UBAC2	+	protein_coding	299	same	9933_ID	chr13	99857962	99858260	299	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
1294	ENST00000364955.1	ENST00000425639.3_6	chr18	44760812	44760919	RNU6-1131P	-	snRNA	chr18	44732539	44778031	SKOR2	-	protein_coding	107	same	10846_ID	chr18	44760813	44760919	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
1449	ENST00000368921.5_2	ENST00000439374.6_3	chr1	151032872	151042020	MLLT11	+	protein_coding	chr1	151023446	151042801	CDC42SE1	-	protein_coding	9148	opposite	9147_ID	chr1	151032873	151042020	9148	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
1462	ENST00000370388.4_4	ENST00000423730.3_3	chr6	73933266	73935219	KHDC1L	-	protein_coding	chr6	73919468	73972919	AL365232.1	-	nonsense_mediated_decay	2227	same	7437_ID	chr6	73933267	73935219	1953	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	8
1463	ENST00000370435.5_2	ENST00000586232.5_4	chr6	71998513	72018762	OGFRL1	+	protein_coding	chr6	71961264	72037766	AL589935.1	-	lncRNA	20249	opposite	9328_ID	chr6	71998514	72018762	20249	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	8
1484	ENST00000371809.3_2	ENST00000371837.5_3	chr10	91137812	91144962	IFIT1B	+	protein_coding	chr10	90973325	91174314	LIPA	-	protein_coding	7150	opposite	7326_ID	chr10	91137813	91144962	7150	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
1486	ENST00000371818.9_2	ENST00000371837.5_3	chr10	91087753	91100725	IFIT3	+	protein_coding	chr10	90973325	91174314	LIPA	-	protein_coding	12975	opposite	7328_ID	chr10	91087754	91100725	12972	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
1491	ENST00000372105.4_4	ENST00000652073.1_1	chr10	85991275	86001302	LRIT1	-	protein_coding	chr10	85990421	86019716	RGR	+	protein_coding	10027	opposite	7852_ID	chr10	85991276	86001302	10027	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
1521	ENST00000374806.2_4	ENST00000361820.6_5	chr9	104353885	104357251	PPP3R2	-	protein_coding	chr9	104331633	104500929	GRIN3A	-	protein_coding	3418	same	9621_ID	chr9	104353886	104357251	3366	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
1542	ENST00000376006.7_1	ENST00000425150.2_4	chrX	51075082	51080377	NUDT10	+	protein_coding	chrX	50933427	51139314	AC233976.1	-	lncRNA	5295	opposite	9316_ID	chrX	51075083	51080377	5295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
1547	ENST00000376414.5_4	ENST00000403766.8_2	chr13	99946792	99959653	GPR183	-	protein_coding	chr13	99853107	100038758	UBAC2	+	protein_coding	12861	opposite	7160_ID	chr13	99946793	99959653	12861	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
1549	ENST00000376582.7_3	ENST00000651767.1_1	chrX	48750729	48755426	TIMM17B	-	protein_coding	chrX	48747479	48760382	PQBP1	+	protein_coding	4697	opposite	12697_ID	chrX	48750730	48755426	4697	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
1570	ENST00000378581.7_3	ENST00000465127.1_1	chrX	37696009	37706767	DYNLT3	-	protein_coding	chrX	37208582	38546928	AF241726.1	+	protein_coding	10815	opposite	6864_ID	chrX	37696010	37706767	10758	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
1571	ENST00000378588.5_2	ENST00000465127.1_1	chrX	37639311	37672714	CYBB	+	protein_coding	chrX	37208582	38546928	AF241726.1	+	protein_coding	33403	same	6751_ID	chrX	37639312	37672714	33403	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
1573	ENST00000378616.5_3	ENST00000465127.1_1	chrX	37545043	37591383	XK	+	protein_coding	chrX	37208582	38546928	AF241726.1	+	protein_coding	46340	same	12923_ID	chrX	37545044	37591383	46340	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
1574	ENST00000378621.7_1	ENST00000465127.1_1	chrX	37430821	37543716	LANCL3	+	protein_coding	chrX	37208582	38546928	AF241726.1	+	protein_coding	112895	same	7508_ID	chrX	37430822	37543716	112895	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
1696	ENST00000383974.1	ENST00000521268.6_4	chr8	85577993	85578100	RNU6-1040P	-	snRNA	chr8	85095508	85834079	RALYL	+	protein_coding	107	opposite	10787_ID	chr8	85577994	85578100	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
1700	ENST00000383982.1	ENST00000252037.5_3	chr7	72753096	72753203	RNU6-1080P	-	snRNA	chr7	72742163	72772634	FKBP6	+	protein_coding	107	opposite	10816_ID	chr7	72753097	72753203	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
1705	ENST00000383989.1	ENST00000636317.1_4	chrX	21232754	21232861	RNU6-133P	+	snRNA	chrX	20892285	21392184	AL807742.1	-	lncRNA	107	opposite	11021_ID	chrX	21232755	21232861	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
1740	ENST00000384105.1	ENST00000369851.7_3	chr1	110134155	110134262	RNU6V	-	snRNA	chr1	110091236	110142817	GNAI3	+	protein_coding	107	opposite	11688_ID	chr1	110134156	110134262	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
1742	ENST00000384111.1	ENST00000395655.8_4	chr7	45143947	45144081	SNORA5A	-	snoRNA	chr7	45139698	45151646	TBRG4	-	protein_coding	134	same	12188_ID	chr7	45143948	45144081	134	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
1792	ENST00000384256.1	ENST00000465127.1_1	chrX	37729361	37729468	RNU6-49P	+	snRNA	chrX	37208582	38546928	AF241726.1	+	protein_coding	107	same	11283_ID	chrX	37729362	37729468	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
1795	ENST00000384265.1	ENST00000257963.9_4	chr12	52381440	52381547	RNU6-574P	+	snRNA	chr12	52345482	52390862	ACVR1B	+	protein_coding	107	same	11347_ID	chr12	52381441	52381547	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
1803	ENST00000384278.1	ENST00000466256.6_1	chr1	17222474	17222638	RNU1-2	+	snRNA	chr1	17066767	17267929	CROCC	+	processed_transcript	164	same	10571_ID	chr1	17222475	17222638	164	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
1824	ENST00000384354.1	ENST00000420696.7_3	chr1	164608801	164608908	RNU6-171P	+	snRNA	chr1	164528420	164821068	PBX1	+	protein_coding	107	same	11048_ID	chr1	164608802	164608908	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
1833	ENST00000384385.1	ENST00000455756.6_4	chr11	88345972	88346079	RNU6-16P	-	snRNA	chr11	88237743	88796816	GRM5	-	protein_coding	107	same	11047_ID	chr11	88345973	88346079	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
1846	ENST00000384433.1	ENST00000326648.4_1	chr15	64963461	64963568	RNU6-549P	+	snRNA	chr15	64791490	64978267	ZNF609	+	protein_coding	107	same	11331_ID	chr15	64963462	64963568	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
1851	ENST00000384441.1	ENST00000444297.2_6	chr2	18764632	18764734	RNU6-1215P	-	snRNA	chr2	18736810	18770830	NT5C1B-RDH14	-	protein_coding	102	same	10917_ID	chr2	18764633	18764734	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
1858	ENST00000384461.1	ENST00000371079.6_3	chr1	64494565	64494672	RNU6-809P	-	snRNA	chr1	64239687	64647181	ROR1	+	protein_coding	107	opposite	11517_ID	chr1	64494566	64494672	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
1876	ENST00000384512.1	ENST00000319942.8_2	chr1	76253573	76253657	SNORD45A	+	snoRNA	chr1	76251940	76260771	RABGGTB	+	protein_coding	84	same	12408_ID	chr1	76253574	76253657	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
1892	ENST00000384545.1	ENST00000372141.7_3	chr10	84100526	84100632	RNU6-441P	+	snRNA	chr10	83634949	84746934	NRG3	+	protein_coding	106	same	11245_ID	chr10	84100527	84100632	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
1901	ENST00000384565.1	ENST00000441049.5_1	chr2	39111700	39111807	RNU6-851P	-	snRNA	chr2	39103131	39156213	MORN2	+	nonsense_mediated_decay	107	opposite	11556_ID	chr2	39111701	39111807	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
1911	ENST00000384591.1	ENST00000359650.10_4	chr1	153304097	153304204	RNU6-160P	+	snRNA	chr1	153302595	153321317	PGLYRP4	-	protein_coding	107	opposite	11040_ID	chr1	153304098	153304204	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
1928	ENST00000384625.1	ENST00000217456.3_4	chr20	24954806	24954916	RNU6-1257P	+	snRNA	chr20	24943560	24973387	APMAP	-	protein_coding	110	opposite	10952_ID	chr20	24954807	24954916	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
1939	ENST00000384655.1	ENST00000401642.8_4	chr4	54131627	54131734	RNU6-310P	-	snRNA	chr4	53739148	54232228	SCFD2	-	protein_coding	107	same	11146_ID	chr4	54131628	54131734	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
2045	ENST00000384879.1	ENST00000264039.7_2	chr2	241395417	241395506	MIR149	+	miRNA	chr2	241375079	241407493	GPC1	+	protein_coding	89	same	8105_ID	chr2	241395418	241395506	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
2051	ENST00000384889.1	ENST00000370328.4_4	chrX	151127049	151127130	MIR224	-	miRNA	chrX	151121595	151143148	GABRE	-	protein_coding	81	same	8194_ID	chrX	151127050	151127130	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
2076	ENST00000384955.2	ENST00000299954.13_2	chr17	65467604	65467701	MIR548AA2	+	miRNA	chr17	65373396	65693377	PITPNC1	+	protein_coding	97	same	8868_ID	chr17	65467605	65467701	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
2095	ENST00000384986.1	ENST00000403766.8_2	chr13	100008384	100008482	MIR623	+	miRNA	chr13	99853107	100038758	UBAC2	+	protein_coding	98	same	9026_ID	chr13	100008385	100008482	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
2104	ENST00000385000.1	ENST00000545797.7_4	chr19	3961411	3961510	MIR637	-	miRNA	chr19	3958450	3971097	DAPK3	-	protein_coding	99	same	9044_ID	chr19	3961412	3961510	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
2116	ENST00000385020.1	ENST00000370328.4_4	chrX	151128099	151128184	MIR452	-	miRNA	chrX	151121595	151143148	GABRE	-	protein_coding	85	same	8601_ID	chrX	151128100	151128184	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
2187	ENST00000385198.2	ENST00000673141.1_4	chr1	156390122	156390230	MIR9-1	+	miRNA	chr1	156374044	156426405	MIR9-1HG	-	lncRNA	108	opposite	9099_ID	chr1	156390123	156390230	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
2199	ENST00000385212.1	ENST00000621465.5_4	chr17	46114526	46114613	MIR152	-	miRNA	chr17	46103532	46115159	COPZ2	-	protein_coding	87	same	8107_ID	chr17	46114527	46114613	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
2279	ENST00000388950.8_3	ENST00000377996.5_1	chr9	35816387	35828744	FAM221B	-	nonsense_mediated_decay	chr9	35814447	35847231	TMEM8B	+	protein_coding	12357	opposite	6972_ID	chr9	35816388	35828744	12357	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
2333	ENST00000390733.1	ENST00000558874.1_3	chr15	94624326	94624420	AC080032.1	-	miRNA	chr15	94448633	94651167	LINC01581	-	lncRNA	94	same	2699_ID	chr15	94624327	94624420	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
2340	ENST00000390764.2	ENST00000372583.6_5	chr1	42224811	42224898	AL451006.1	+	miRNA	chr1	41972035	42384593	HIVEP3	-	protein_coding	87	opposite	5664_ID	chr1	42224812	42224898	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
2378	ENST00000390938.1	ENST00000377194.7_3	chr6	28883421	28883521	RNU6-930P	+	snRNA	chr6	28870778	28891765	TRIM27	-	protein_coding	100	opposite	11617_ID	chr6	28883422	28883521	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
2386	ENST00000390958.1	ENST00000355237.6_1	chr5	68826439	68826544	RNU6-724P	-	snRNA	chr5	68788118	68853931	OCLN	+	protein_coding	105	opposite	11454_ID	chr5	68826440	68826544	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
2423	ENST00000391127.1	ENST00000327835.7_4	chr8	81661795	81661928	RNU11-6P	-	snRNA	chr8	81540685	81787016	ZNF704	-	protein_coding	133	same	10617_ID	chr8	81661796	81661928	133	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
2476	ENST00000393080.8_2	ENST00000553947.1_2	chr14	95078720	95090392	SERPINA3	+	protein_coding	chr14	95058394	95090983	AL049839.2	+	nonsense_mediated_decay	11672	same	12039_ID	chr14	95078721	95090392	11672	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	8
2495	ENST00000395152.3_1	ENST00000422163.5_1	chr3	50277049	50277416	U73169.1	+	lncRNA	chr3	50263723	50296330	GNAI2	+	protein_coding	367	same	12833_ID	chr3	50277050	50277416	367	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
2505	ENST00000396594.8_4	ENST00000464497.5_1	chr9	36214437	36276975	GNE	-	protein_coding	chr9	36190927	36304778	CLTA	+	nonsense_mediated_decay	62602	opposite	7139_ID	chr9	36214438	36276975	62538	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	5	8
2512	ENST00000396912.2_3	ENST00000407184.5_5	chr7	5085490	5109118	RBAK	+	protein_coding	chr7	5023348	5112852	RBAK-RBAKDN	+	protein_coding	23667	same	9709_ID	chr7	5085491	5109118	23628	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	8
2513	ENST00000397057.6_3	ENST00000464747.5_5	chr2	178148235	178257415	AC019080.1	-	lncRNA	chr2	178095035	178257425	NFE2L2	-	protein_coding	109184	same	1682_ID	chr2	178148236	178257415	109180	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	8
2552	ENST00000400768.2_3	ENST00000403782.5_1	chr2	242674129	242674913	AC114730.1	-	lncRNA	chr2	242674016	242708224	D2HGDH	+	protein_coding	784	opposite	3867_ID	chr2	242674130	242674913	784	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
2558	ENST00000401114.1	ENST00000633930.1_4	chrX	71372185	71372264	BX119917.1	-	miRNA	chrX	71130667	71373136	NHSL2	+	protein_coding	79	opposite	6448_ID	chrX	71372186	71372264	79	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	8	8
2586	ENST00000401251.1	ENST00000336755.10_2	chr9	37296019	37296101	AL158155.1	-	miRNA	chr9	37120570	37358146	ZCCHC7	+	protein_coding	82	opposite	5102_ID	chr9	37296020	37296101	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
2599	ENST00000401286.1	ENST00000455762.5_3	chr4	1988110	1988204	MIR943	-	miRNA	chr4	1987841	2043630	NELFA	-	protein_coding	94	same	9120_ID	chr4	1988111	1988204	94	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	8
2628	ENST00000404327.3_3	ENST00000264039.7_2	chr2	241388834	241396131	AC110619.1	-	lncRNA	chr2	241375079	241407493	GPC1	+	protein_coding	7400	opposite	3791_ID	chr2	241388835	241396131	7297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
2639	ENST00000407472.5_4	ENST00000405009.5_3	chr22	19833660	19842419	RTL10	-	protein_coding	chr22	19775940	19842462	GNB1L	-	protein_coding	8759	same	11976_ID	chr22	19833661	19842419	8759	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	8
2642	ENST00000408057.1	ENST00000655105.1_1	chr8	58096192	58096279	AC025674.1	+	miRNA	chr8	58055261	58153782	LINC01606	+	lncRNA	87	same	2103_ID	chr8	58096193	58096279	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
2707	ENST00000408258.2	ENST00000521268.6_4	chr8	85208237	85208323	AC103816.1	-	miRNA	chr8	85095508	85834079	RALYL	+	protein_coding	86	opposite	3474_ID	chr8	85208238	85208323	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
2718	ENST00000408287.1	ENST00000369452.9_2	chr10	112748683	112748771	MIR548E	+	miRNA	chr10	112679361	112773423	SHOC2	+	protein_coding	88	same	8893_ID	chr10	112748684	112748771	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
2775	ENST00000408424.1	ENST00000675388.1_1	chr8	129832039	129832124	AC068570.1	+	miRNA	chr8	129675266	130587261	CCDC26	-	lncRNA	85	opposite	2418_ID	chr8	129832040	129832124	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
2784	ENST00000408451.1	ENST00000372141.7_3	chr10	83810017	83810104	AL096864.1	+	miRNA	chr10	83634949	84746934	NRG3	+	protein_coding	87	same	4689_ID	chr10	83810018	83810104	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
2788	ENST00000408463.1	ENST00000367755.9_2	chr1	171070868	171070947	MIR1295A	-	miRNA	chr1	171060045	171086959	FMO3	+	protein_coding	79	opposite	8062_ID	chr1	171070869	171070947	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
2822	ENST00000408539.2	ENST00000465127.1_1	chrX	37883147	37883239	MIR548AJ2	-	miRNA	chrX	37208582	38546928	AF241726.1	+	protein_coding	92	opposite	8873_ID	chrX	37883148	37883239	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
2836	ENST00000408566.1	ENST00000289119.7_4	chr18	19263470	19263558	MIR320C1	+	miRNA	chr18	19230861	19284735	ABHD3	-	protein_coding	88	opposite	8314_ID	chr18	19263471	19263558	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
2872	ENST00000408639.1	ENST00000593124.1_6	chr19	10514133	10514214	MIR1181	-	miRNA	chr19	10503935	10530797	CDC37	-	protein_coding	81	same	7967_ID	chr19	10514134	10514214	81	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	3	8
2875	ENST00000408651.1	ENST00000650631.1_3	chr1	168717033	168717120	AL049798.1	-	miRNA	chr1	168665111	169072514	AL135926.1	-	lncRNA	87	same	4636_ID	chr1	168717034	168717120	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
2895	ENST00000408698.1	ENST00000401722.7_3	chr12	98999651	98999738	AC013283.1	+	miRNA	chr12	98987368	99000157	SLC25A3	+	protein_coding	87	same	1431_ID	chr12	98999652	98999738	87	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	8	8
2907	ENST00000408726.1	ENST00000650010.1_1	chr2	59468755	59468837	AC007131.3	-	miRNA	chr2	59241488	59504823	AC007092.1	+	lncRNA	82	opposite	511_ID	chr2	59468756	59468837	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
2949	ENST00000408822.1	ENST00000435159.2_2	chr12	129154424	129154519	AC107020.1	-	miRNA	chr12	128751947	129192460	TMEM132C	+	protein_coding	95	opposite	3677_ID	chr12	129154425	129154519	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
2958	ENST00000408852.2	ENST00000374177.7_3	chr6	34036933	34036995	AL590403.1	-	miRNA	chr6	33989630	34123399	GRM4	-	protein_coding	62	same	5765_ID	chr6	34036934	34036995	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
3002	ENST00000410005.2_3	ENST00000652570.1_1	chr21	35772409	35773370	FAM243A	-	protein_coding	chr21	35748355	35789259	SMIM11A	+	nonsense_mediated_decay	961	opposite	6983_ID	chr21	35772410	35773370	961	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
3006	ENST00000410119.1	ENST00000664783.1_4	chr10	103382615	103382722	RNU6-1165P	+	snRNA	chr10	103370423	103455016	FBXW4	-	protein_coding	107	opposite	10872_ID	chr10	103382616	103382722	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
3020	ENST00000410168.1	ENST00000602930.1	chr10	51255379	51255495	RNA5SP316	+	rRNA	chr10	51224680	51371321	AGAP8	-	protein_coding	116	opposite	10515_ID	chr10	51255380	51255495	116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
3101	ENST00000410494.1	ENST00000379174.7_3	chr9	34282525	34282668	RNU2-50P	-	snRNA	chr9	34252378	34311369	KIF24	-	protein_coding	143	same	10641_ID	chr9	34282526	34282668	143	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
3104	ENST00000410516.1	ENST00000522663.5_3	chr5	179272831	179273152	RN7SKP150	+	misc_RNA	chr5	179262132	179285860	MRNIP	-	nonsense_mediated_decay	321	opposite	9789_ID	chr5	179272832	179273152	321	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
3120	ENST00000410592.1	ENST00000332836.7_4	chr19	56248650	56248966	RN7SKP109	+	misc_RNA	chr19	56219803	56249768	NLRP9	-	protein_coding	316	opposite	9764_ID	chr19	56248651	56248966	316	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
3131	ENST00000410662.1	ENST00000649263.1_3	chr4	145956283	145956588	RN7SKP235	+	misc_RNA	chr4	145131853	146019326	AC098588.2	-	nonsense_mediated_decay	305	opposite	9842_ID	chr4	145956284	145956588	305	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
3166	ENST00000410823.1	ENST00000675388.1_1	chr8	130303228	130303521	RN7SKP206	+	misc_RNA	chr8	129675266	130587261	CCDC26	-	lncRNA	293	opposite	9822_ID	chr8	130303229	130303521	293	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
3238	ENST00000411248.1	ENST00000427482.7_2	chr15	84284937	84285010	AC087738.1	+	miRNA	chr15	84116092	84287495	SH3GL3	+	protein_coding	73	same	2845_ID	chr15	84284938	84285010	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
3272	ENST00000411431.1_1	ENST00000367268.5_4	chr1	202601555	202602039	AC104463.1	+	lncRNA	chr1	202559723	202679582	SYT2	-	protein_coding	484	opposite	3541_ID	chr1	202601556	202602039	484	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
3283	ENST00000411759.1_1	ENST00000246635.8_5	chr17	39657234	39658661	AC019349.1	+	lncRNA	chr17	39657232	39661864	KRT13	-	protein_coding	1427	opposite	1706_ID	chr17	39657235	39658661	1427	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	8
3284	ENST00000411790.1_3	ENST00000321582.9_4	chr9	124646914	124725998	TTLL11-IT1	-	lncRNA	chr9	124584206	124855885	TTLL11	-	protein_coding	79084	same	12813_ID	chr9	124646915	124725998	79084	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
3291	ENST00000411863.2_2	ENST00000426595.1_1	chr7	55955229	56010223	ZNF713	+	nonsense_mediated_decay	chr7	55954969	56022932	AC092647.5	+	protein_coding	55075	same	13066_ID	chr7	55955230	56010223	54994	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	8
3339	ENST00000412798.1_1	ENST00000544604.7_3	chr22	29388708	29414608	ZNRF3-IT1	+	lncRNA	chr22	29279559	29453476	ZNRF3	+	protein_coding	25900	same	13083_ID	chr22	29388709	29414608	25900	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
3370	ENST00000413845.1_3	ENST00000367463.5_2	chr6	149276763	149285820	UST-AS1	-	lncRNA	chr6	149068165	149398126	UST	+	protein_coding	9057	opposite	12883_ID	chr6	149276764	149285820	9057	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	8
3379	ENST00000414074.1_1	ENST00000262848.6_4	chrX	3577527	3586233	PRKX-AS1	+	lncRNA	chrX	3522380	3631690	PRKX	-	protein_coding	8706	opposite	9640_ID	chrX	3577528	3586233	8706	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
3385	ENST00000414156.1_3	ENST00000372257.7_4	chr1	44709079	44709945	ERI3-IT1	-	lncRNA	chr1	44686741	44820929	ERI3	-	protein_coding	866	same	6924_ID	chr1	44709080	44709945	866	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
3402	ENST00000414598.1_3	ENST00000666751.1_1	chr20	51068002	51072158	AL109610.1	-	lncRNA	chr20	50827181	51287117	LINC01524	+	lncRNA	4156	opposite	4694_ID	chr20	51068003	51072158	4156	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
3415	ENST00000414844.2_3	ENST00000615277.5_4	chr3	17084233	17085684	PLCL2-AS1	-	lncRNA	chr3	16926447	17132096	PLCL2	+	protein_coding	1451	opposite	9578_ID	chr3	17084234	17085684	1451	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
3476	ENST00000416237.1_3	ENST00000666751.1_1	chr20	51104460	51117130	AL049765.1	-	lncRNA	chr20	50827181	51287117	LINC01524	+	lncRNA	12670	opposite	4632_ID	chr20	51104461	51117130	12670	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
3493	ENST00000416679.1_1	ENST00000371953.8_3	chr10	89638448	89640184	AC063965.2	+	lncRNA	chr10	89623381	89731687	PTEN	+	protein_coding	1736	same	2357_ID	chr10	89638449	89640184	1736	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
3508	ENST00000417267.1_3	ENST00000403782.5_1	chr2	242694207	242695155	AC114730.2	-	lncRNA	chr2	242674016	242708224	D2HGDH	+	protein_coding	948	opposite	3868_ID	chr2	242694208	242695155	948	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
3511	ENST00000417353.6_1	ENST00000423698.6_4	chr19	45971252	45978436	FOSB	+	protein_coding	chr19	45910591	45982086	ERCC1	-	protein_coding	7185	opposite	7057_ID	chr19	45971253	45978436	7184	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
3577	ENST00000419144.1_1	ENST00000622548.4_3	chr1	119911568	119912954	HAO2-IT1	+	lncRNA	chr1	119911401	119936751	HAO2	+	protein_coding	1386	same	7214_ID	chr1	119911569	119912954	1386	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
3665	ENST00000421530.1_3	ENST00000420696.7_3	chr1	164738352	164743878	PBX1-AS1	-	lncRNA	chr1	164528420	164821068	PBX1	+	protein_coding	5526	opposite	9503_ID	chr1	164738353	164743878	5526	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
3705	ENST00000422345.1_3	ENST00000466256.6_1	chr1	17177815	17179624	BX284668.1	-	lncRNA	chr1	17066767	17267929	CROCC	+	processed_transcript	1873	opposite	6453_ID	chr1	17177816	17179624	1809	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
3738	ENST00000423121.1_1	ENST00000580248.5_3	chr1	165738165	165744413	TMCO1-AS1	+	lncRNA	chr1	165696542	165796992	TMCO1	-	protein_coding	6248	opposite	12708_ID	chr1	165738166	165744413	6248	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
3764	ENST00000423919.1_1	ENST00000465127.1_1	chrX	38080643	38082920	AL606748.1	+	lncRNA	chrX	37208582	38546928	AF241726.1	+	protein_coding	2277	same	5840_ID	chrX	38080644	38082920	2277	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
3846	ENST00000426124.1_1	ENST00000644013.1_3	chr2	112365417	112370095	AC017002.1	+	lncRNA	chr2	112186900	112456610	AC017002.3	-	lncRNA	4678	opposite	1583_ID	chr2	112365418	112370095	4678	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	8
3980	ENST00000430534.1_3	ENST00000637185.1_2	chr9	109346422	109354233	AL451140.1	-	lncRNA	chr9	108755590	109464943	LINC01505	+	lncRNA	7811	opposite	5673_ID	chr9	109346423	109354233	7811	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	8
3997	ENST00000430895.1_1	ENST00000525270.5_3	chr6	133073813	133075090	AL032821.1	+	lncRNA	chr6	133065334	133084586	VNN2	-	protein_coding	1277	opposite	4570_ID	chr6	133073814	133075090	1277	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	8
4003	ENST00000431020.1_3	ENST00000438115.7_2	chr2	64412211	64432619	LINC00309	-	lncRNA	chr2	64370372	64479966	AC012368.1	+	lncRNA	20408	opposite	7539_ID	chr2	64412212	64432619	20408	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
4009	ENST00000431347.1_1	ENST00000651706.1_1	chr1	221002596	221005771	LINC01352	+	lncRNA	chr1	220960331	221057845	AL445423.3	+	nonsense_mediated_decay	3175	same	7637_ID	chr1	221002597	221005771	3175	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
4011	ENST00000431369.1_3	ENST00000645747.1_2	chr6	9124453	9162010	AL137220.1	-	lncRNA	chr6	8436265	9294366	HULC	+	lncRNA	37557	opposite	4946_ID	chr6	9124454	9162010	37557	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
4062	ENST00000432886.6_4	ENST00000465127.1_1	chrX	38008588	38080177	SRPX	-	protein_coding	chrX	37208582	38546928	AF241726.1	+	protein_coding	71589	opposite	12546_ID	chrX	38008589	38080177	71589	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
4076	ENST00000433228.1_1	ENST00000676302.1_1	chrX	17546557	17605281	Z93022.1	+	lncRNA	chrX	17393322	17754114	NHS	+	protein_coding	58724	same	12954_ID	chrX	17546558	17605281	58724	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
4132	ENST00000434951.1_3	ENST00000335965.11_2	chr7	6618195	6628605	AC079742.1	-	lncRNA	chr7	6617084	6629005	ZDHHC4	+	protein_coding	10410	opposite	2674_ID	chr7	6618196	6628605	10410	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	8
4145	ENST00000435195.1_3	ENST00000313552.11_4	chr2	242664029	242665108	AC114730.3	-	lncRNA	chr2	242641453	242668893	ING5	+	protein_coding	1079	opposite	3869_ID	chr2	242664030	242665108	1079	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	8
4158	ENST00000435491.1_1	ENST00000502492.6_6	chr17	47009152	47014462	AC091133.1	+	lncRNA	chr17	47006677	47022204	SNF8	-	protein_coding	5310	opposite	2980_ID	chr17	47009153	47014462	5310	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	8
4182	ENST00000436283.1_3	ENST00000328908.9_1	chr6	4774759	4775642	CDYL-AS1	-	lncRNA	chr6	4706392	4955781	CDYL	+	protein_coding	883	opposite	6610_ID	chr6	4774760	4775642	883	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
4187	ENST00000436329.2_3	ENST00000377047.9_2	chr13	94806446	94840245	GPC6-AS1	-	lncRNA	chr13	93879059	95060274	GPC6	+	protein_coding	33799	opposite	7152_ID	chr13	94806447	94840245	33799	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
4202	ENST00000436713.1_1	ENST00000290663.10_3	chr1	43850783	43854826	MED8-AS1	+	lncRNA	chr1	43849587	43855479	MED8	-	protein_coding	4043	opposite	7939_ID	chr1	43850784	43854826	4043	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
4281	ENST00000438967.1_1	ENST00000358871.6_4	chr6	41688133	41701770	AL035588.1	+	lncRNA	chr6	41651715	41703997	TFEB	-	protein_coding	13637	opposite	4612_ID	chr6	41688134	41701770	13637	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
4283	ENST00000439076.2_1	ENST00000355097.7_5	chr9	139947113	139947827	AL807752.4	+	lncRNA	chr9	139942558	139948513	ENTPD2	-	protein_coding	714	opposite	5910_ID	chr9	139947114	139947827	714	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
4285	ENST00000439097.1_1	ENST00000675702.1_1	chr10	21462942	21463977	NEBL-AS1	+	lncRNA	chr10	21068978	21581940	NEBL	-	processed_transcript	1035	opposite	9249_ID	chr10	21462943	21463977	1035	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
4292	ENST00000439232.2_1	ENST00000654008.1_3	chr20	37053730	37054002	SNORA71B	-	snoRNA	chr20	37048284	37064018	SNHG17	-	lncRNA	272	same	12202_ID	chr20	37053731	37054002	272	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
4307	ENST00000439565.1_3	ENST00000664622.1_1	chr4	124666077	124666828	AC096732.1	-	lncRNA	chr4	124460605	124883737	LINC01091	+	lncRNA	751	opposite	3292_ID	chr4	124666078	124666828	751	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
4327	ENST00000440249.1_1	ENST00000372583.6_5	chr1	42001113	42001539	AL445933.2	+	lncRNA	chr1	41972035	42384593	HIVEP3	-	protein_coding	426	opposite	5637_ID	chr1	42001114	42001539	426	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
4337	ENST00000440436.1_1	ENST00000379959.8_6	chr10	6067940	6078390	AL137186.1	+	lncRNA	chr10	6052651	6104330	IL2RA	-	protein_coding	10450	opposite	4945_ID	chr10	6067941	6078390	10450	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
4340	ENST00000440540.1_1	ENST00000366812.6_5	chr1	226335703	226342772	ACBD3-AS1	+	lncRNA	chr1	226332379	226374442	ACBD3	-	protein_coding	7069	opposite	4322_ID	chr1	226335704	226342772	7069	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
4345	ENST00000440589.2_3	ENST00000372141.7_3	chr10	83983968	83988935	AC010157.1	-	lncRNA	chr10	83634949	84746934	NRG3	+	protein_coding	4967	opposite	1020_ID	chr10	83983969	83988935	4967	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
4347	ENST00000440657.1_1	ENST00000282344.11_4	chr13	27736991	27743272	USP12-AS1	+	lncRNA	chr13	27640292	27745948	USP12	-	protein_coding	6281	opposite	12855_ID	chr13	27736992	27743272	6281	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
4380	ENST00000441773.1_1	ENST00000342310.7_4	chr1	165185216	165188341	LMX1A-AS1	+	lncRNA	chr1	165171103	165325952	LMX1A	-	protein_coding	3154	opposite	7839_ID	chr1	165185217	165188341	3125	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
4566	ENST00000447167.1_1	ENST00000368012.4_4	chr1	161054254	161057361	NECTIN4-AS1	+	lncRNA	chr1	161040787	161059348	NECTIN4	-	protein_coding	3107	opposite	9251_ID	chr1	161054255	161057361	3107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
4620	ENST00000448797.2_2	ENST00000465127.1_1	chrX	37853504	37854171	H2AL1RP	+	protein_coding	chrX	37208582	38546928	AF241726.1	+	protein_coding	667	same	7209_ID	chrX	37853505	37854171	667	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
4648	ENST00000449613.1_1	ENST00000414318.2_3	chr3	18031514	18037036	AC132807.1	+	lncRNA	chr3	17201863	18486309	TBC1D5	-	processed_transcript	5522	opposite	4102_ID	chr3	18031515	18037036	5522	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
4661	ENST00000449984.1_3	ENST00000359653.4_2	chr10	126633772	126635001	AL731577.1	-	lncRNA	chr10	126630691	126676758	ZRANB1	+	protein_coding	1229	opposite	5901_ID	chr10	126633773	126635001	1229	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
4715	ENST00000451556.2_3	ENST00000375114.7_1	chr20	32602774	32605555	AL031668.1	-	lncRNA	chr20	32581451	32672690	RALY	+	protein_coding	2781	opposite	4542_ID	chr20	32602775	32605555	2781	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
4747	ENST00000452178.1_1	ENST00000367462.5_4	chr1	190234027	190331400	AL354771.1	+	lncRNA	chr1	190066787	190446994	BRINP3	-	protein_coding	97373	opposite	5285_ID	chr1	190234028	190331400	97373	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	8
4763	ENST00000452591.1_3	ENST00000368554.8_4	chr10	135159257	135164230	AL360181.1	-	lncRNA	chr10	135122913	135166033	ZNF511-PRAP1	+	protein_coding	4973	opposite	5525_ID	chr10	135159258	135164230	4973	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	8
4771	ENST00000452788.1_3	ENST00000676302.1_1	chrX	17570469	17575508	NHS-AS1	-	lncRNA	chrX	17393322	17754114	NHS	+	protein_coding	5039	opposite	9261_ID	chrX	17570470	17575508	5039	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
4778	ENST00000453078.1_1	ENST00000262570.10_7	chr7	132515452	132534353	AC009365.3	+	lncRNA	chr7	132469630	132766850	CHCHD3	-	protein_coding	18901	opposite	951_ID	chr7	132515453	132534353	18901	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
4779	ENST00000453111.1_3	ENST00000358671.9_2	chr1	161641767	161644614	AL451067.1	-	lncRNA	chr1	161632950	161648444	FCGR2B	+	protein_coding	2847	opposite	5668_ID	chr1	161641768	161644614	2847	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	8
4813	ENST00000454029.1_3	ENST00000429719.5_1	chr7	23719813	23720405	AC006026.3	-	lncRNA	chr7	23719785	23742262	FAM221A	+	nonsense_mediated_decay	592	opposite	399_ID	chr7	23719814	23720405	592	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	8
4824	ENST00000454270.5_1	ENST00000371790.5_4	chr10	91215820	91227897	SLC16A12-AS1	+	lncRNA	chr10	91190055	91295351	SLC16A12	-	protein_coding	12077	opposite	12073_ID	chr10	91215821	91227897	12077	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	8
4837	ENST00000454709.1_1	ENST00000298784.5_4	chr10	88873710	88875280	AL136982.3	+	lncRNA	chr10	88854952	88951220	SHLD2	+	protein_coding	1570	same	4925_ID	chr10	88873711	88875280	1570	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
4840	ENST00000454877.1_3	ENST00000297001.7_2	chr7	50181135	50182419	AC020743.1	-	lncRNA	chr7	50135478	50198852	SPATA48	+	protein_coding	1284	opposite	1732_ID	chr7	50181136	50182419	1284	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
4870	ENST00000455607.3_4	ENST00000367384.7_4	chr6	150117286	150119308	AL355312.2	-	lncRNA	chr6	150070578	150132556	PCMT1	+	protein_coding	3000	opposite	5329_ID	chr6	150117287	150119308	2022	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
4876	ENST00000455788.1_3	ENST00000368376.7_2	chr1	155180941	155183610	AC234582.1	-	lncRNA	chr1	155178489	155183614	MTX1	+	protein_coding	2669	opposite	4261_ID	chr1	155180942	155183610	2669	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	8
4885	ENST00000456082.1_1	ENST00000646289.1_1	chr10	29032673	29033592	AL355376.1	+	lncRNA	chr10	29032434	29230839	LINC01517	+	lncRNA	919	same	5336_ID	chr10	29032674	29033592	919	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	8
4905	ENST00000456535.1_1	ENST00000427914.5_3	chr3	186194515	186196159	LINC02051	+	lncRNA	chr3	186172779	186211450	LINC02052	-	lncRNA	1644	opposite	7720_ID	chr3	186194516	186196159	1644	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	8
4946	ENST00000457405.1_3	ENST00000650631.1_3	chr1	168732602	168743728	AL031275.1	-	lncRNA	chr1	168665111	169072514	AL135926.1	-	lncRNA	11126	same	4511_ID	chr1	168732603	168743728	11126	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
4979	ENST00000458474.2	ENST00000426327.3	chr7	74856620	74857439	AC004878.7	-	sense_intronic	chr7	74807498	74867509	GATSL2	-	protein_coding	819	same	189_ID	chr7	74856621	74857439	819	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
5028	ENST00000458919.1	ENST00000465127.1_1	chrX	38467467	38467529	RNU7-7P	+	snRNA	chrX	37208582	38546928	AF241726.1	+	protein_coding	62	same	11810_ID	chrX	38467468	38467529	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
5047	ENST00000459100.1	ENST00000635775.1_4	chr8	12493612	12493761	AC068587.1	+	miRNA	chr8	12394587	12523097	AC068587.4	-	lncRNA	149	opposite	2422_ID	chr8	12493613	12493761	149	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
5051	ENST00000459135.1	ENST00000356692.10_2	chr3	73076958	73077024	RNU7-19P	+	snRNA	chr3	73045961	73118349	PPP4R2	+	protein_coding	66	same	11764_ID	chr3	73076959	73077024	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
5052	ENST00000459155.1	ENST00000440277.6_4	chr12	7076499	7076769	SCARNA12	-	snoRNA	chr12	7074489	7079916	PHB2	-	protein_coding	270	same	11991_ID	chr12	7076500	7076769	270	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
5093	ENST00000459351.1	ENST00000438063.6_3	chr15	21060579	21060686	RNU6-749P	-	snRNA	chr15	21040700	21071643	POTEB2	-	nonsense_mediated_decay	107	same	11472_ID	chr15	21060580	21060686	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
5098	ENST00000459397.1	ENST00000540184.5_1	chr12	3038130	3038191	RNU7-166P	+	snRNA	chr12	2986388	3043728	TULP3	+	nonsense_mediated_decay	61	same	11737_ID	chr12	3038131	3038191	61	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
5167	ENST00000461850.2	ENST00000356607.9_2	chr1	10676892	10677170	RN7SL614P	+	misc_RNA	chr1	10535006	10690815	PEX14	+	protein_coding	278	same	10307_ID	chr1	10676893	10677170	278	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
5189	ENST00000462921.2	ENST00000451303.1_4	chr9	123965436	123965712	RN7SL181P	+	misc_RNA	chr9	123943776	123985292	RAB14	-	protein_coding	276	opposite	9999_ID	chr9	123965437	123965712	276	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
5207	ENST00000464331.2	ENST00000341197.9_4	chr20	42635887	42636178	RN7SL443P	+	misc_RNA	chr20	42543491	42698256	TOX2	+	protein_coding	291	same	10186_ID	chr20	42635888	42636178	291	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
5212	ENST00000464584.2	ENST00000320152.11_4	chr10	25197450	25197741	RN7SKP241	-	misc_RNA	chr10	25137542	25241535	PRTFDC1	-	protein_coding	291	same	9850_ID	chr10	25197451	25197741	291	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
5215	ENST00000464664.3_2	ENST00000291560.7_4	chr21	44985069	44985529	CU639417.1	+	protein_coding	chr21	44949065	45079369	HSF2BP	-	protein_coding	460	opposite	6742_ID	chr21	44985070	44985529	460	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
5221	ENST00000464971.1	ENST00000327835.7_4	chr8	81688900	81689197	RN7SL308P	-	misc_RNA	chr8	81540685	81787016	ZNF704	-	protein_coding	297	same	10095_ID	chr8	81688901	81689197	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
5239	ENST00000466485.2	ENST00000650360.1_1	chr1	22337142	22337437	RN7SL186P	+	misc_RNA	chr1	22310098	22357110	AL590556.3	+	lncRNA	295	same	10002_ID	chr1	22337143	22337437	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
5256	ENST00000467794.1_3	ENST00000472028.5_1	chr3	156158945	156164694	KCNAB1-AS1	-	lncRNA	chr3	155755489	156232213	KCNAB1	+	protein_coding	5749	opposite	7403_ID	chr3	156158946	156164694	5749	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
5362	ENST00000473817.1_1	ENST00000492200.5_4	chr3	146307388	146308112	PLSCR5-AS1	+	lncRNA	chr3	146294341	146323026	PLSCR5	-	protein_coding	724	opposite	9588_ID	chr3	146307389	146308112	724	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
5364	ENST00000473876.1_3	ENST00000472028.5_1	chr3	155933348	155945672	KCNAB1-AS2	-	lncRNA	chr3	155755489	156232213	KCNAB1	+	protein_coding	12324	opposite	7405_ID	chr3	155933349	155945672	12324	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
5407	ENST00000477138.2	ENST00000551171.6_2	chr14	68172670	68172972	RN7SL369P	+	misc_RNA	chr14	68168602	68201168	RDH12	+	protein_coding	302	same	10134_ID	chr14	68172671	68172972	302	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
5416	ENST00000478131.2	ENST00000359791.5_1	chr7	34793035	34793333	RN7SL132P	+	misc_RNA	chr7	34697896	34917944	NPSR1	+	protein_coding	298	same	9968_ID	chr7	34793036	34793333	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
5445	ENST00000479626.1_3	ENST00000337002.9_2	chr3	169696323	169703503	SEC62-AS1	-	lncRNA	chr3	169684594	169716161	SEC62	+	protein_coding	7180	opposite	12028_ID	chr3	169696324	169703503	7180	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	8
5465	ENST00000481521.2	ENST00000264202.8_7	chr1	19750877	19751163	RN7SL277P	+	misc_RNA	chr1	19665268	19812033	CAPZB	-	protein_coding	286	opposite	10074_ID	chr1	19750878	19751163	286	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
5475	ENST00000482040.2	ENST00000614328.4_3	chr12	57064235	57064530	RN7SL809P	-	misc_RNA	chr12	57057126	57082192	PTGES3	-	protein_coding	295	same	10447_ID	chr12	57064236	57064530	295	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
5488	ENST00000482958.1_3	ENST00000651449.1_1	chr3	165490692	165555250	BCHE	-	nonsense_mediated_decay	chr3	165178326	165564307	LINC01322	+	lncRNA	64559	opposite	6404_ID	chr3	165490693	165555250	64558	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
5497	ENST00000483834.1_1	ENST00000679296.1_1	chr3	52273273	52275113	AC006252.1	+	lncRNA	chr3	52262648	52280804	TWF2	-	protein_coding	1840	opposite	446_ID	chr3	52273274	52275113	1840	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
5509	ENST00000484703.1_1	ENST00000295902.11_5	chr3	64089145	64091732	PRICKLE2-AS2	+	lncRNA	chr3	64079546	64431083	PRICKLE2	-	protein_coding	2587	opposite	9629_ID	chr3	64089146	64091732	2587	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
5562	ENST00000488319.5_1	ENST00000355182.8_3	chr13	36920567	36943738	SPART-AS1	+	lncRNA	chr13	36875776	36944317	SPART	-	protein_coding	23171	opposite	12506_ID	chr13	36920568	36943738	23171	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
5568	ENST00000488739.2	ENST00000299954.13_2	chr17	65453140	65453406	RN7SL756P	-	misc_RNA	chr17	65373396	65693377	PITPNC1	+	protein_coding	266	opposite	10411_ID	chr17	65453141	65453406	266	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
5580	ENST00000490006.6_1	ENST00000370548.3_1	chr1	87595456	87634881	LINC01140	+	lncRNA	chr1	87458691	87634887	AC093155.3	+	protein_coding	39434	same	7606_ID	chr1	87595457	87634881	39425	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	8
5582	ENST00000490021.2_1	ENST00000369831.6_1	chr1	110230435	110251661	GSTM1	+	processed_transcript	chr1	110210643	110252171	GSTM2	+	protein_coding	21226	same	7194_ID	chr1	110230436	110251661	21226	*	+	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	8
5590	ENST00000490324.2_3	ENST00000273347.10_2	chr3	101542636	101543842	AC020651.1	-	lncRNA	chr3	101498054	101547075	NXPE3	+	protein_coding	1206	opposite	1716_ID	chr3	101542637	101543842	1206	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	8	8
5610	ENST00000491567.2_4	ENST00000626474.3_5	chr3	72252094	72259065	AC112219.1	-	lncRNA	chr3	72084912	72328654	LINC00877	-	lncRNA	59485	same	3813_ID	chr3	72252095	72259065	6971	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
5633	ENST00000492975.1_1	ENST00000618852.5_4	chr1	27783708	27786093	FO393419.2	+	lncRNA	chr1	27730733	27816678	WASF2	-	protein_coding	2385	opposite	7053_ID	chr1	27783709	27786093	2385	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
5723	ENST00000499579.1_1	ENST00000422135.5_6	chr8	110656343	110660313	AC079061.1	+	lncRNA	chr8	110586416	110704020	SYBU	-	protein_coding	3970	opposite	2618_ID	chr8	110656344	110660313	3970	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
5758	ENST00000502221.2_3	ENST00000422113.7_4	chr12	130336752	130339489	AC055717.1	-	lncRNA	chr12	129556270	130388570	TMEM132D	-	protein_coding	2737	same	2328_ID	chr12	130336753	130339489	2737	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
5774	ENST00000502725.1_3	ENST00000372141.7_3	chr10	83988740	83992333	NRG3-AS1	-	lncRNA	chr10	83634949	84746934	NRG3	+	protein_coding	3936	opposite	9305_ID	chr10	83988741	83992333	3593	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
5807	ENST00000504175.2_1	ENST00000677182.1_1	chr8	110310826	110328742	AC021237.1	+	lncRNA	chr8	110253170	110346350	NUDCD1	-	nonsense_mediated_decay	17916	opposite	1785_ID	chr8	110310827	110328742	17916	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
5815	ENST00000504413.1_1	ENST00000541337.5_3	chr5	139227874	139235974	AC008667.2	+	lncRNA	chr5	139226363	139422884	NRG2	-	protein_coding	8100	opposite	768_ID	chr5	139227875	139235974	8100	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	8
5827	ENST00000504773.1_1	ENST00000359651.7_1	chr1	201980497	201984785	AL691482.3	+	lncRNA	chr1	201977072	201985137	ELF3	+	protein_coding	4288	same	5887_ID	chr1	201980498	201984785	4288	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	8
5849	ENST00000505408.1_1	ENST00000305798.8_4	chr4	99417514	99431086	AC108159.1	+	lncRNA	chr4	99391517	99579762	TSPAN5	-	protein_coding	13572	opposite	3727_ID	chr4	99417515	99431086	13572	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
5854	ENST00000505528.2_1	ENST00000382152.7_9	chr4	21583718	21615351	AC096576.3	+	lncRNA	chr4	20730228	21950395	KCNIP4	-	protein_coding	31633	opposite	3278_ID	chr4	21583719	21615351	31633	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
5865	ENST00000505920.1_3	ENST00000352397.10_4	chr22	43035808	43036607	ATP5MGL	-	protein_coding	chr22	43013845	43045398	CYB5R3	-	protein_coding	799	same	6376_ID	chr22	43035809	43036607	799	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
5925	ENST00000507630.1_1	ENST00000306315.9_3	chr5	124070310	124070868	AC113398.2	-	lncRNA	chr5	123972609	124081118	ZNF608	-	protein_coding	558	same	3853_ID	chr5	124070311	124070868	558	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
5958	ENST00000508813.1_1	ENST00000401642.8_4	chr4	53811855	53824254	AC023154.1	+	lncRNA	chr4	53739148	54232228	SCFD2	-	protein_coding	12439	opposite	1935_ID	chr4	53811856	53824254	12399	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
6012	ENST00000510619.2_1	ENST00000263398.11_2	chr11	35234096	35235554	AL133330.1	+	lncRNA	chr11	35160717	35253949	CD44	+	protein_coding	1458	same	4843_ID	chr11	35234097	35235554	1458	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
6050	ENST00000511698.2_4	ENST00000653000.1_1	chr5	1963459	1967365	AC126768.1	-	lncRNA	chr5	1934002	2119365	AC124852.1	+	lncRNA	3906	opposite	4026_ID	chr5	1963460	1967365	3906	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
6054	ENST00000511835.1_1	ENST00000382152.7_9	chr4	21699072	21720649	AC096576.2	+	lncRNA	chr4	20730228	21950395	KCNIP4	-	protein_coding	21577	opposite	3277_ID	chr4	21699073	21720649	21577	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
6069	ENST00000512133.6_1	ENST00000422113.7_4	chr12	129594173	129597839	TMEM132D-AS1	+	retained_intron	chr12	129556270	130388570	TMEM132D	-	protein_coding	3666	opposite	12715_ID	chr12	129594174	129597839	3666	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
6101	ENST00000513041.1_1	ENST00000513157.1_3	chr5	16428644	16432545	AC020980.1	+	lncRNA	chr5	16373469	16440190	LINC02150	-	lncRNA	3901	opposite	1773_ID	chr5	16428645	16432545	3901	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	8
6131	ENST00000514010.1_3	ENST00000425059.1_2	chr3	129808275	129813147	LINC02014	-	lncRNA	chr3	129800673	129817233	ALG1L2	+	protein_coding	4872	opposite	7714_ID	chr3	129808276	129813147	4872	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
6137	ENST00000514226.5_1	ENST00000380259.7_5	chr11	5640993	5665628	TRIM34	+	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	24635	opposite	12780_ID	chr11	5640994	5665628	24635	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	8
6151	ENST00000514519.1_1	ENST00000653000.1_1	chr5	1968207	1969127	AC126768.2	+	lncRNA	chr5	1934002	2119365	AC124852.1	+	lncRNA	920	same	4027_ID	chr5	1968208	1969127	920	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
6164	ENST00000515092.1_1	ENST00000306315.9_3	chr5	124043519	124046430	AC112196.1	+	lncRNA	chr5	123972609	124081118	ZNF608	-	protein_coding	2911	opposite	3811_ID	chr5	124043520	124046430	2911	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
6169	ENST00000515264.1_1	ENST00000503039.1_1	chr5	176478714	176479964	ZNF346-IT1	+	lncRNA	chr5	176449735	176508190	ZNF346	+	protein_coding	1250	same	13039_ID	chr5	176478715	176479964	1250	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
6258	ENST00000516069.1	ENST00000393593.8_4	chr4	185353119	185353203	SNORD79	+	snoRNA	chr4	185308882	185395704	IRF2	-	protein_coding	84	opposite	12447_ID	chr4	185353120	185353203	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
6279	ENST00000516130.1	ENST00000282058.11_2	chr18	43701580	43701687	RNU6-1278P	-	snRNA	chr18	43684350	43708299	HAUS1	+	protein_coding	107	opposite	10970_ID	chr18	43701581	43701687	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
6352	ENST00000516337.1	ENST00000372257.7_4	chr1	44798776	44798850	AL390776.1	-	miRNA	chr1	44686741	44820929	ERI3	-	protein_coding	74	same	5560_ID	chr1	44798777	44798850	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
6356	ENST00000516346.1	ENST00000528056.5_2	chrY	7246712	7246820	RNU6-941P	+	snRNA	chrY	7142012	7249589	PRKY	+	processed_transcript	108	same	11623_ID	chrY	7246713	7246820	108	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	8	8
6426	ENST00000516556.1	ENST00000377047.9_2	chr13	94021099	94021213	SNORD22	-	snoRNA	chr13	93879059	95060274	GPC6	+	protein_coding	114	opposite	12391_ID	chr13	94021100	94021213	114	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
6429	ENST00000516566.1	ENST00000451320.6_5	chr4	153822117	153822231	AC099339.1	+	miRNA	chr4	153701088	153833509	ARFIP1	+	protein_coding	114	same	3356_ID	chr4	153822118	153822231	114	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
6432	ENST00000516570.1	ENST00000306851.9_3	chr18	29249251	29249341	RNU6-1002P	-	snRNA	chr18	29203131	29264686	B4GALT6	-	protein_coding	90	same	10757_ID	chr18	29249252	29249341	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
6439	ENST00000516588.1	ENST00000434425.5_1	chr13	34403675	34403786	RNU5A-4P	-	snRNA	chr13	34392205	34540695	RFC3	+	protein_coding	111	opposite	10735_ID	chr13	34403676	34403786	111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
6447	ENST00000516605.1	ENST00000238856.8_2	chr2	64806025	64806131	RNU6-100P	+	snRNA	chr2	64751438	64820139	AFTPH	+	protein_coding	106	same	10763_ID	chr2	64806026	64806131	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
6567	ENST00000516961.1	ENST00000546373.5_3	chr12	69305700	69305762	RNU7-4P	+	snRNA	chr12	69249536	69357049	CPM	-	protein_coding	62	opposite	11788_ID	chr12	69305701	69305762	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
6626	ENST00000517107.1	ENST00000651500.1_1	chr2	201763742	201763844	RNU6-762P	+	snRNA	chr2	201754091	201768661	NIF3L1	+	protein_coding	102	same	11483_ID	chr2	201763743	201763844	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
6645	ENST00000517163.1	ENST00000395407.7_2	chr15	69659923	69660020	RNA5SP398	+	rRNA	chr15	69591250	69700119	PAQR5	+	protein_coding	97	same	10519_ID	chr15	69659924	69660020	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
6723	ENST00000517658.1_3	ENST00000517878.6_3	chr8	142262384	142263391	AC011676.1	-	lncRNA	chr8	142217272	142318387	SLC45A4	-	protein_coding	1007	same	1278_ID	chr8	142262385	142263391	1007	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
6733	ENST00000518011.1_3	ENST00000361421.2_4	chr8	59904278	59905497	AC105150.1	-	lncRNA	chr8	59717970	60031706	TOX	-	protein_coding	1219	same	3599_ID	chr8	59904279	59905497	1219	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
6742	ENST00000518181.1_3	ENST00000659919.1_1	chr8	35861833	35952564	AC124290.2	-	lncRNA	chr8	35828201	36048712	AC124290.1	+	lncRNA	90731	opposite	4006_ID	chr8	35861834	35952564	90731	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
6744	ENST00000518302.1_1	ENST00000220597.4_4	chr8	81949198	81953066	AC022778.1	+	lncRNA	chr8	81880044	82024303	PAG1	-	protein_coding	3868	opposite	1903_ID	chr8	81949199	81953066	3868	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
6775	ENST00000519048.1_1	ENST00000675388.1_1	chr8	130428194	130458098	AC011257.1	+	lncRNA	chr8	129675266	130587261	CCDC26	-	lncRNA	29904	opposite	1183_ID	chr8	130428195	130458098	29904	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
6776	ENST00000519107.1_1	ENST00000220597.4_4	chr8	81970757	81979979	AC079209.2	+	lncRNA	chr8	81880044	82024303	PAG1	-	protein_coding	9222	opposite	2629_ID	chr8	81970758	81979979	9222	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
6805	ENST00000520129.1_3	ENST00000416274.7_2	chr8	86089756	86090385	AC011773.1	-	lncRNA	chr8	86089388	86126753	E2F5	+	protein_coding	629	opposite	1294_ID	chr8	86089757	86090385	629	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	8
6815	ENST00000520562.1_1	ENST00000518322.6_3	chr8	94731801	94733395	AC010834.3	+	lncRNA	chr8	94712777	94743755	CIBAR1	+	protein_coding	1594	same	1152_ID	chr8	94731802	94733395	1594	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
6819	ENST00000520606.1_1	ENST00000517878.6_3	chr8	142288326	142302961	AC011676.3	+	lncRNA	chr8	142217272	142318387	SLC45A4	-	protein_coding	14635	opposite	1280_ID	chr8	142288327	142302961	14635	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
6830	ENST00000520882.1_3	ENST00000356143.5_1	chr5	141350201	141362252	AC005740.3	-	lncRNA	chr5	141346401	141369855	RNF14	+	protein_coding	12051	opposite	349_ID	chr5	141350202	141362252	12051	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
6886	ENST00000522776.5_3	ENST00000663058.1_1	chr8	83426802	83589388	AC060765.1	-	lncRNA	chr8	82945767	83865313	AC060765.2	+	lncRNA	162586	opposite	2345_ID	chr8	83426803	83589388	162586	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
6941	ENST00000524467.1_1	ENST00000637851.1_1	chr11	125810390	125811088	AP000842.1	-	lncRNA	chr11	125773242	125813579	DDX25	+	nonsense_mediated_decay	698	opposite	6035_ID	chr11	125810391	125811088	698	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
6944	ENST00000524512.1_3	ENST00000259400.11_3	chr9	102677358	102692178	AL358937.1	-	lncRNA	chr9	102668935	102736816	STX17	+	protein_coding	14820	opposite	5467_ID	chr9	102677359	102692178	14820	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
7008	ENST00000527110.2_2	ENST00000382080.6_4	chr8	14018592	14022868	AC022039.1	+	lncRNA	chr8	13942353	15095940	SGCZ	-	protein_coding	4276	opposite	1818_ID	chr8	14018593	14022868	4276	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	8
7081	ENST00000529910.1_3	ENST00000530639.6_4	chr11	36342707	36344990	AC087277.1	-	lncRNA	chr11	36317837	36486754	PRR5L	+	protein_coding	2283	opposite	2793_ID	chr11	36342708	36344990	2283	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
7142	ENST00000531702.1_1	ENST00000368761.11_8	chr6	111921077	111923498	Z97989.1	+	lncRNA	chr6	111876583	111927081	TRAF3IP2	-	protein_coding	2421	opposite	12972_ID	chr6	111921078	111923498	2421	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
7151	ENST00000531966.1_3	ENST00000530639.6_4	chr11	36446996	36447672	AC009656.1	-	lncRNA	chr11	36317837	36486754	PRR5L	+	protein_coding	676	opposite	983_ID	chr11	36446997	36447672	676	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
7152	ENST00000532022.1_3	ENST00000378618.6_3	chr11	47144654	47152352	AC090589.2	-	lncRNA	chr11	46958304	47185936	C11orf49	+	protein_coding	7698	opposite	2916_ID	chr11	47144655	47152352	7698	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
7178	ENST00000533203.1_1	ENST00000530639.6_4	chr11	36408070	36409800	AC087277.2	+	lncRNA	chr11	36317837	36486754	PRR5L	+	protein_coding	1730	same	2794_ID	chr11	36408071	36409800	1730	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
7188	ENST00000533473.1_2	ENST00000356692.10_2	chr3	73110809	73112488	EBLN2	+	protein_coding	chr3	73045961	73118349	PPP4R2	+	protein_coding	1679	same	6867_ID	chr3	73110810	73112488	1679	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
7223	ENST00000535372.1_4	ENST00000546087.5_5	chr6	160181289	160183364	SOD2-OT1	-	lncRNA	chr6	160100150	160183561	SOD2	-	protein_coding	2075	same	12487_ID	chr6	160181290	160183364	2075	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	8
7227	ENST00000535704.1_1	ENST00000537140.5_3	chr11	115234347	115248649	AP000462.1	+	lncRNA	chr11	115039955	115375241	CADM1	-	processed_transcript	14302	opposite	5989_ID	chr11	115234348	115248649	14302	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
7237	ENST00000536216.1_1	ENST00000435159.2_2	chr12	128884522	128889359	AC023595.1	+	lncRNA	chr12	128751947	129192460	TMEM132C	+	protein_coding	4837	same	1962_ID	chr12	128884523	128889359	4837	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
7287	ENST00000539362.1_3	ENST00000422113.7_4	chr12	130005847	130007308	AC130404.1	-	lncRNA	chr12	129556270	130388570	TMEM132D	-	protein_coding	1461	same	4064_ID	chr12	130005848	130007308	1461	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
7312	ENST00000540547.1_1	ENST00000310653.10_5	chr11	73471607	73472115	AP002770.1	+	lncRNA	chr11	73386682	73472182	RAB6A	-	protein_coding	508	opposite	6202_ID	chr11	73471608	73472115	508	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	8
7338	ENST00000542735.2_4	ENST00000504897.2_1	chr5	140050378	140053161	DND1	-	protein_coding	chr5	140047818	140053709	WDR55	+	nonsense_mediated_decay	2783	opposite	6828_ID	chr5	140050379	140053161	2783	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	8
7343	ENST00000543182.1_1	ENST00000537140.5_3	chr11	115267473	115268376	AP000462.2	+	lncRNA	chr11	115039955	115375241	CADM1	-	processed_transcript	903	opposite	5990_ID	chr11	115267474	115268376	903	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
7364	ENST00000544036.1_3	ENST00000422113.7_4	chr12	130165971	130182772	AC117373.1	-	lncRNA	chr12	129556270	130388570	TMEM132D	-	protein_coding	16801	same	3923_ID	chr12	130165972	130182772	16801	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
7390	ENST00000545593.1_1	ENST00000537140.5_3	chr11	115204295	115210981	AP000462.3	+	lncRNA	chr11	115039955	115375241	CADM1	-	processed_transcript	6686	opposite	5991_ID	chr11	115204296	115210981	6686	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
7406	ENST00000546318.2_1	ENST00000371837.5_3	chr10	91152302	91166243	IFIT1	+	protein_coding	chr10	90973325	91174314	LIPA	-	protein_coding	13942	opposite	7325_ID	chr10	91152303	91166243	13941	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
7432	ENST00000547084.1_3	ENST00000549379.5_3	chr12	62533779	62539424	AC078789.1	-	lncRNA	chr12	62102057	62653925	TAFA2	-	nonsense_mediated_decay	5645	same	2583_ID	chr12	62533780	62539424	5645	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
7451	ENST00000547824.1_1	ENST00000345127.9_5	chr12	42853167	42859930	AC079601.1	+	lncRNA	chr12	42850558	42983548	PRICKLE1	-	protein_coding	6763	opposite	2670_ID	chr12	42853168	42859930	6763	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	8
7487	ENST00000549291.1_3	ENST00000517298.5_1	chr8	86134959	86157946	AC011773.3	-	lncRNA	chr8	86132844	86180856	CA13	+	processed_transcript	23272	opposite	1296_ID	chr8	86134960	86157946	22987	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
7503	ENST00000549993.1_1	ENST00000550042.2_5	chr12	78169562	78177356	AC138331.1	+	lncRNA	chr12	77718420	78400811	NAV3	+	protein_coding	7794	same	4184_ID	chr12	78169563	78177356	7794	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
7522	ENST00000551187.1_3	ENST00000561579.6_3	chr16	66875335	66887351	AC044802.2	-	lncRNA	chr16	66851372	66907159	NAE1	-	protein_coding	12016	same	2302_ID	chr16	66875336	66887351	12016	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
7530	ENST00000551732.1_3	ENST00000635546.1_3	chr12	54555848	54558236	AC023794.4	-	lncRNA	chr12	54515062	54582792	SMUG1	-	nonsense_mediated_decay	2388	same	1968_ID	chr12	54555849	54558236	2388	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
7534	ENST00000552026.1_3	ENST00000651706.1_1	chr1	221006104	221053482	HLX-AS1	-	lncRNA	chr1	220960331	221057845	AL445423.3	+	nonsense_mediated_decay	47378	opposite	7241_ID	chr1	221006105	221053482	47378	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
7552	ENST00000552736.2_2	ENST00000550042.2_5	chr12	77773549	77784649	AC073591.1	+	lncRNA	chr12	77718420	78400811	NAV3	+	protein_coding	11100	same	2537_ID	chr12	77773550	77784649	11100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
7560	ENST00000553027.1_1	ENST00000266984.9_3	chr12	49315300	49320257	FKBP11	-	retained_intron	chr12	49297892	49325623	CCDC65	+	protein_coding	4957	opposite	7030_ID	chr12	49315301	49320257	4957	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
7585	ENST00000553732.1_1	ENST00000556674.2_3	chr14	76437266	76437930	TGFB3-AS1	+	lncRNA	chr14	76424458	76449354	TGFB3	-	protein_coding	664	opposite	12671_ID	chr14	76437267	76437930	664	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	8
7611	ENST00000554430.1_3	ENST00000266126.10_2	chr14	75471421	75475184	AL049780.1	-	lncRNA	chr14	75469623	75479069	EIF2B2	+	protein_coding	3763	opposite	4635_ID	chr14	75471422	75475184	3763	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	8
7683	ENST00000556708.1_3	ENST00000667030.1_1	chr15	93960078	93965805	AC091078.2	-	lncRNA	chr15	93774910	94084434	AC091078.1	+	lncRNA	5727	opposite	2975_ID	chr15	93960079	93965805	5727	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
7701	ENST00000557304.1_3	ENST00000553645.7_2	chr14	74164805	74167054	AC006146.1	-	lncRNA	chr14	74111688	74170435	DNAL1	+	protein_coding	2249	opposite	429_ID	chr14	74164806	74167054	2249	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	8	8
7734	ENST00000558192.1_3	ENST00000394855.7_3	chr15	78573291	78574532	AC090607.4	-	lncRNA	chr15	78556427	78574538	DNAJA4	+	protein_coding	1241	opposite	2919_ID	chr15	78573292	78574532	1241	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	8
7752	ENST00000558421.1_3	ENST00000267889.5_3	chr15	40661125	40661841	AC013356.4	-	lncRNA	chr15	40650419	40670822	DISP2	+	protein_coding	716	opposite	1435_ID	chr15	40661126	40661841	716	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	8	8
7756	ENST00000558463.1_3	ENST00000327367.9_2	chr15	67435071	67439277	AC012568.1	-	lncRNA	chr15	67357939	67487507	SMAD3	+	protein_coding	4206	opposite	1411_ID	chr15	67435072	67439277	4206	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
7822	ENST00000560034.1_1	ENST00000290894.12_4	chr15	45462541	45492156	AC051619.3	+	lncRNA	chr15	45459411	45493373	SHF	-	protein_coding	29615	opposite	2317_ID	chr15	45462542	45492156	29615	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
7836	ENST00000560378.1_1	ENST00000559228.6_3	chr15	59107470	59109927	AC090515.5	+	lncRNA	chr15	59063500	59154099	MINDY2	+	protein_coding	2457	same	2901_ID	chr15	59107471	59109927	2457	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
7859	ENST00000560870.1_1	ENST00000395407.7_2	chr15	69683530	69684488	AC027237.4	+	lncRNA	chr15	69591250	69700119	PAQR5	+	protein_coding	958	same	2197_ID	chr15	69683531	69684488	958	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
7871	ENST00000561241.1_1	ENST00000651344.1_1	chr15	63338232	63341586	TPM1-AS	-	lncRNA	chr15	63334846	63364096	TPM1	+	retained_intron	3354	opposite	12768_ID	chr15	63338233	63341586	3354	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
7887	ENST00000561652.1_1	ENST00000260247.10_4	chr11	102921415	102926528	AP001486.2	-	lncRNA	chr11	102921414	102962889	DCUN1D5	-	protein_coding	5113	same	6141_ID	chr11	102921416	102926528	5113	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	8	8
7956	ENST00000562917.1_1	ENST00000649416.1_3	chr8	104476616	104481213	AC012213.2	+	lncRNA	chr8	104410885	104514123	AC012213.5	-	protein_coding	4597	opposite	1349_ID	chr8	104476617	104481213	4597	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
7989	ENST00000563477.1_1	ENST00000641956.1_1	chr16	29150981	29228027	AC009093.2	+	lncRNA	chr16	29150699	29342625	AC009093.10	+	lncRNA	77046	same	866_ID	chr16	29150982	29228027	77046	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	8
8017	ENST00000564074.1_1	ENST00000262493.12_5	chr16	56334527	56336816	AC009102.1	+	lncRNA	chr16	56225400	56391356	GNAO1	+	protein_coding	2289	same	877_ID	chr16	56334528	56336816	2289	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
8025	ENST00000564380.1_1	ENST00000635546.1_3	chr12	54538852	54541009	AC023794.5	-	lncRNA	chr12	54515062	54582792	SMUG1	-	nonsense_mediated_decay	2157	same	1970_ID	chr12	54538853	54541009	2157	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
8038	ENST00000564531.1_3	ENST00000360284.7_2	chr12	52452242	52453116	NR4A1AS	-	lncRNA	chr12	52416615	52453290	NR4A1	+	protein_coding	1045	opposite	9300_ID	chr12	52452243	52453116	874	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	8
8135	ENST00000566538.1_3	ENST00000637556.1_3	chr9	38542385	38543212	AL390726.3	-	lncRNA	chr9	38540565	38577204	FAM95C	-	nonsense_mediated_decay	827	same	5558_ID	chr9	38542386	38543212	827	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	8
8159	ENST00000567002.1	ENST00000267889.5_3	chr15	40666598	40668192	RP11-64K12.10	+	sense_overlapping	chr15	40650419	40670822	DISP2	+	protein_coding	1594	same	11924_ID	chr15	40666599	40668192	1594	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	8	8
8162	ENST00000567108.2_1	ENST00000286096.9_3	chr16	27224628	27226314	AC109449.1	-	lncRNA	chr16	27214846	27233089	KDM8	+	protein_coding	1686	opposite	3757_ID	chr16	27224629	27226314	1686	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	8
8177	ENST00000567273.1_1	ENST00000465127.1_1	chrX	37765399	37808658	AL121578.1	+	lncRNA	chrX	37208582	38546928	AF241726.1	+	protein_coding	43259	same	4737_ID	chrX	37765400	37808658	43259	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
8185	ENST00000567428.2_3	ENST00000637556.1_3	chr9	38542475	38568419	AL390726.2	-	lncRNA	chr9	38540565	38577204	FAM95C	-	nonsense_mediated_decay	25944	same	5557_ID	chr9	38542476	38568419	25944	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	8
8200	ENST00000567942.1_3	ENST00000268261.9_2	chr16	8941506	8942581	AC012173.1	-	lncRNA	chr16	8891695	8943182	PMM2	+	protein_coding	1075	opposite	1339_ID	chr16	8941507	8942581	1075	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	8
8221	ENST00000568314.1_1	ENST00000290894.12_4	chr15	45490714	45491337	AC051619.6	-	lncRNA	chr15	45459411	45493373	SHF	-	protein_coding	623	same	2318_ID	chr15	45490715	45491337	623	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
8310	ENST00000570711.5_1	ENST00000323434.12_3	chr17	180995	183279	AC129507.1	+	lncRNA	chr17	62292	202888	RPH3AL	-	protein_coding	2284	opposite	4048_ID	chr17	180996	183279	2284	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
8313	ENST00000570869.1_1	ENST00000335255.10_3	chr17	80535898	80536492	AC124283.3	+	lncRNA	chr17	80477607	80562478	FOXK2	+	protein_coding	594	same	4005_ID	chr17	80535899	80536492	594	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
8386	ENST00000574705.1_1	ENST00000262366.7_1	chr16	4385870	4387819	AC012676.1	-	lncRNA	chr16	4364761	4389598	GLIS2	+	protein_coding	1949	opposite	1425_ID	chr16	4385871	4387819	1949	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	8
8396	ENST00000575085.1_3	ENST00000335255.10_3	chr17	80545188	80546287	AC124283.2	-	lncRNA	chr17	80477607	80562478	FOXK2	+	protein_coding	1099	opposite	4004_ID	chr17	80545189	80546287	1099	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
8475	ENST00000577386.1	ENST00000422113.7_4	chr12	130263852	130264126	RN7SL534P	-	misc_RNA	chr12	129556270	130388570	TMEM132D	-	protein_coding	274	same	10256_ID	chr12	130263853	130264126	274	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
8497	ENST00000577515.1	ENST00000487305.5_1	chr1	32552549	32552608	MIR5585	+	miRNA	chr1	32537631	32568464	TMEM39B	+	processed_transcript	59	same	8938_ID	chr1	32552550	32552608	59	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
8499	ENST00000577522.1	ENST00000379174.7_3	chr9	34296376	34296428	AL353662.4	+	miRNA	chr9	34252378	34311369	KIF24	-	protein_coding	52	opposite	5250_ID	chr9	34296377	34296428	52	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
8501	ENST00000577544.1_1	ENST00000299954.13_2	chr17	65520596	65521538	AC110921.1	+	lncRNA	chr17	65373396	65693377	PITPNC1	+	protein_coding	942	same	3804_ID	chr17	65520597	65521538	942	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
8556	ENST00000577768.1	ENST00000359775.10_4	chr6	157950163	157950232	MIR3692	+	miRNA	chr6	157802221	158099189	ZDHHC14	+	protein_coding	69	same	8392_ID	chr6	157950164	157950232	69	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
8564	ENST00000577793.1	ENST00000675388.1_1	chr8	130508467	130508569	AC011652.2	-	miRNA	chr8	129675266	130587261	CCDC26	-	lncRNA	102	same	1277_ID	chr8	130508468	130508569	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
8580	ENST00000577904.1	ENST00000675388.1_1	chr8	130496302	130496388	MIR3686	-	miRNA	chr8	129675266	130587261	CCDC26	-	lncRNA	86	same	8389_ID	chr8	130496303	130496388	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
8630	ENST00000578216.1_1	ENST00000500970.5_1	chr11	119288660	119289824	THY1-AS1	+	lncRNA	chr11	119252519	119397374	USP2-AS1	+	lncRNA	1164	same	12692_ID	chr11	119288661	119289824	1164	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
8650	ENST00000578359.1	ENST00000556029.6_3	chr12	98918253	98918535	RN7SL179P	-	misc_RNA	chr12	98909367	98944129	TMPO	+	protein_coding	282	opposite	9997_ID	chr12	98918254	98918535	282	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
8686	ENST00000578583.1_1	ENST00000289119.7_4	chr18	19253588	19262522	AC106037.3	+	lncRNA	chr18	19230861	19284735	ABHD3	-	protein_coding	8934	opposite	3632_ID	chr18	19253589	19262522	8934	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
8694	ENST00000578628.1	ENST00000517736.5_3	chr8	67971140	67971238	AC109335.1	+	miRNA	chr8	67955313	67977178	COPS5	-	protein_coding	98	opposite	3752_ID	chr8	67971141	67971238	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
8770	ENST00000579056.1	ENST00000675388.1_1	chr8	130508087	130508189	hsa-mir-3673	-	miRNA	chr8	129675266	130587261	CCDC26	-	lncRNA	102	same	7296_ID	chr8	130508088	130508189	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
8776	ENST00000579080.1	ENST00000370918.8_3	chr6	53141790	53141869	MIR5685	+	miRNA	chr6	53132195	53213977	ELOVL5	-	protein_coding	79	opposite	8957_ID	chr6	53141791	53141869	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
8792	ENST00000579188.1_1	ENST00000313056.10_4	chr17	80358578	80359258	AC132938.2	-	lncRNA	chr17	80347085	80376462	OGFOD3	-	protein_coding	680	same	4106_ID	chr17	80358579	80359258	680	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
8820	ENST00000579398.1	ENST00000354914.8_4	chr8	27743555	27743633	MIR4287	-	miRNA	chr8	27727399	27850190	SCARA5	-	protein_coding	78	same	8482_ID	chr8	27743556	27743633	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
8882	ENST00000579753.1	ENST00000435159.2_2	chr12	128778636	128778723	MIR3612	+	miRNA	chr12	128751947	129192460	TMEM132C	+	protein_coding	87	same	8345_ID	chr12	128778637	128778723	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
8945	ENST00000580085.1_1	ENST00000324238.7_4	chr17	29119389	29119851	AC127024.5	+	lncRNA	chr17	29109701	29151710	CRLF3	-	protein_coding	462	opposite	4029_ID	chr17	29119390	29119851	462	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
8949	ENST00000580107.1	ENST00000402506.5_1	chr7	2566707	2566779	MIR4648	+	miRNA	chr7	2552162	2568061	LFNG	+	protein_coding	72	same	8634_ID	chr7	2566708	2566779	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
8987	ENST00000580343.1	ENST00000234071.8_5	chr2	128181112	128181194	MIR4783	-	miRNA	chr2	128176002	128186818	PROC	+	protein_coding	82	opposite	8770_ID	chr2	128181113	128181194	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
9023	ENST00000580543.1	ENST00000649194.1_1	chr18	35237097	35237178	MIR4318	+	miRNA	chr18	35145243	35342095	AC009899.1	+	lncRNA	81	same	8510_ID	chr18	35237098	35237178	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
9078	ENST00000580804.1	ENST00000675388.1_1	chr8	130509215	130509296	AC016178.1	-	miRNA	chr8	129675266	130587261	CCDC26	-	lncRNA	81	same	1521_ID	chr8	130509216	130509296	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
9136	ENST00000581080.1_3	ENST00000254066.10_2	chr17	38497118	38499388	RARA-AS1	-	lncRNA	chr17	38465431	38513895	RARA	+	protein_coding	2270	opposite	9701_ID	chr17	38497119	38499388	2270	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
9146	ENST00000581132.1	ENST00000399933.8_6	chr9	6007825	6007904	MIR4665	+	miRNA	chr9	5919021	6008482	KIAA2026	-	protein_coding	79	opposite	8654_ID	chr9	6007826	6007904	79	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	8
9157	ENST00000581203.1	ENST00000546373.5_3	chr12	69350185	69350266	AC133749.1	-	miRNA	chr12	69249536	69357049	CPM	-	protein_coding	81	same	4118_ID	chr12	69350186	69350266	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
9162	ENST00000581256.1	ENST00000388837.6_2	chr12	53345491	53345579	AC107016.2	+	miRNA	chr12	53342654	53346684	KRT18	+	protein_coding	88	same	3676_ID	chr12	53345492	53345579	88	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
9200	ENST00000581522.1	ENST00000355182.8_3	chr13	36929927	36930015	AL139377.1	+	miRNA	chr13	36875776	36944317	SPART	-	protein_coding	88	opposite	5044_ID	chr13	36929928	36930015	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
9240	ENST00000581788.1_1	ENST00000580900.5_2	chr9	21858908	21861925	AL359922.2	-	lncRNA	chr9	21802647	21937650	MTAP	+	protein_coding	3017	opposite	5508_ID	chr9	21858909	21861925	3017	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	8
9339	ENST00000582253.1	ENST00000298784.5_4	chr10	88913842	88914126	RN7SL733P	-	misc_RNA	chr10	88854952	88951220	SHLD2	+	protein_coding	284	opposite	10388_ID	chr10	88913843	88914126	284	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
9345	ENST00000582284.1	ENST00000374279.4_2	chr9	114694379	114694449	MIR4668	+	miRNA	chr9	114659093	114697649	UGCG	+	protein_coding	70	same	8657_ID	chr9	114694380	114694449	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
9346	ENST00000582296.1	ENST00000675388.1_1	chr8	130509832	130509913	AC016178.2	-	miRNA	chr8	129675266	130587261	CCDC26	-	lncRNA	81	same	1522_ID	chr8	130509833	130509913	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
9450	ENST00000582865.1	ENST00000370328.4_4	chrX	151125154	151125250	AF274855.1	-	miRNA	chrX	151121595	151143148	GABRE	-	protein_coding	96	same	4406_ID	chrX	151125155	151125250	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
9458	ENST00000582899.1	ENST00000675388.1_1	chr8	130509593	130509674	hsa-mir-3669	-	miRNA	chr8	129675266	130587261	CCDC26	-	lncRNA	81	same	7295_ID	chr8	130509594	130509674	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
9462	ENST00000582918.1	ENST00000271850.11_3	chr1	154138722	154139025	RN7SL431P	-	misc_RNA	chr1	154129793	154164534	TPM3	-	protein_coding	303	same	10178_ID	chr1	154138723	154139025	303	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
9463	ENST00000582927.1	ENST00000267484.10_6	chr14	60113679	60113738	MIR5586	-	miRNA	chr14	60062700	60337494	RTN1	-	protein_coding	59	same	8939_ID	chr14	60113680	60113738	59	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
9497	ENST00000583138.1_3	ENST00000261593.8_2	chr18	29702362	29704441	AC011825.2	-	lncRNA	chr18	29671836	29711524	RNF138	+	protein_coding	2079	opposite	1302_ID	chr18	29702363	29704441	2079	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	8
9547	ENST00000583431.1	ENST00000520876.8_3	chr19	813583	813653	MIR3187	+	miRNA	chr19	812487	821955	PLPPR3	-	protein_coding	70	opposite	8301_ID	chr19	813584	813653	70	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	8	8
9555	ENST00000583472.1	ENST00000262493.12_5	chr16	56279431	56279535	MIR3935	+	miRNA	chr16	56225400	56391356	GNAO1	+	protein_coding	104	same	8432_ID	chr16	56279432	56279535	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
9584	ENST00000583622.1	ENST00000418521.6_3	chr6	35101230	35101315	AL138721.1	+	miRNA	chr6	35086045	35116387	TCP11	-	protein_coding	85	opposite	4971_ID	chr6	35101231	35101315	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
9591	ENST00000583661.1	ENST00000466256.6_1	chr1	17185443	17185516	MIR3675	-	miRNA	chr1	17066767	17267929	CROCC	+	processed_transcript	73	opposite	8381_ID	chr1	17185444	17185516	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
9630	ENST00000583905.1	ENST00000375114.7_1	chr20	32636924	32636996	MIR4755	+	miRNA	chr20	32581451	32672690	RALY	+	protein_coding	72	same	8743_ID	chr20	32636925	32636996	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
9649	ENST00000583991.1_3	ENST00000382713.10_2	chr18	67150862	67285930	AC119868.2	-	lncRNA	chr18	67068123	67516323	DOK6	+	protein_coding	135068	opposite	3956_ID	chr18	67150863	67285930	135068	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
9671	ENST00000584102.1	ENST00000675388.1_1	chr8	130508757	130508857	AC011652.1	-	miRNA	chr8	129675266	130587261	CCDC26	-	lncRNA	100	same	1276_ID	chr8	130508758	130508857	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
9680	ENST00000584148.1_3	ENST00000289119.7_4	chr18	19241747	19242356	AC106037.2	-	lncRNA	chr18	19230861	19284735	ABHD3	-	protein_coding	609	same	3631_ID	chr18	19241748	19242356	609	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
9732	ENST00000584415.1	ENST00000650360.1_1	chr1	22330077	22330361	RN7SL768P	-	misc_RNA	chr1	22310098	22357110	AL590556.3	+	lncRNA	284	opposite	10418_ID	chr1	22330078	22330361	284	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
9794	ENST00000584813.1	ENST00000506734.5_1	chr5	69370672	69370944	RN7SL9P	+	misc_RNA	chr5	69345483	69373423	SMN2	+	nonsense_mediated_decay	272	same	10505_ID	chr5	69370673	69370944	272	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
9795	ENST00000584815.1_3	ENST00000269051.9_5	chr17	30607405	30607972	AC026620.1	-	lncRNA	chr17	30592850	30651678	RHBDL3	+	protein_coding	567	opposite	2162_ID	chr17	30607406	30607972	567	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
9799	ENST00000584834.1	ENST00000643750.1_3	chr13	21007916	21007985	MIR4499	-	miRNA	chr13	20977812	21100012	CRYL1	-	protein_coding	69	same	8579_ID	chr13	21007917	21007985	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
9814	ENST00000584920.1	ENST00000377603.5_2	chr20	18451258	18451335	MIR3192	+	miRNA	chr20	18448033	18465290	POLR3F	+	protein_coding	77	same	8304_ID	chr20	18451259	18451335	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
9829	ENST00000585009.1	ENST00000588952.5_3	chr19	10341088	10341161	MIR4322	+	miRNA	chr19	10283765	10341962	DNMT1	-	protein_coding	73	opposite	8515_ID	chr19	10341089	10341161	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
9884	ENST00000585270.1	ENST00000676302.1_1	chrX	17444003	17444077	MIR4768	+	miRNA	chrX	17393322	17754114	NHS	+	protein_coding	74	same	8756_ID	chrX	17444004	17444077	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
9908	ENST00000585647.2_3	ENST00000263620.3	chr19	928258	928817	AC005379.1	-	lncRNA	chr19	925999	975939	ARID3A	+	protein_coding	559	opposite	288_ID	chr19	928259	928817	559	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
9920	ENST00000585985.1_1	ENST00000654829.1_1	chr18	53484397	53486990	AC022031.1	+	lncRNA	chr18	53257134	53506415	AC022031.2	+	lncRNA	2593	same	1815_ID	chr18	53484398	53486990	2593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
9962	ENST00000587304.3_7	ENST00000436535.4_4	chr17	40190249	40202619	C17orf113	-	protein_coding	chr17	40178914	40250497	ZNF385C	-	protein_coding	12370	same	6484_ID	chr17	40190250	40202619	12370	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
9965	ENST00000587320.1_3	ENST00000654829.1_1	chr18	53443957	53448952	LINC01415	-	lncRNA	chr18	53257134	53506415	AC022031.2	+	lncRNA	4996	opposite	7642_ID	chr18	53443958	53448952	4995	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
10028	ENST00000589617.1_3	ENST00000382897.2_3	chr18	53728339	53730309	AC006305.2	-	lncRNA	chr18	53670843	53858493	AC006305.1	-	lncRNA	1970	same	453_ID	chr18	53728340	53730309	1970	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
10104	ENST00000591974.5_3	ENST00000382897.2_3	chr18	53750586	53804767	LINC01539	-	lncRNA	chr18	53670843	53858493	AC006305.1	-	lncRNA	54181	same	7650_ID	chr18	53750587	53804767	54181	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
10109	ENST00000592319.1_1	ENST00000591471.5_1	chr19	37828137	37828645	AC016590.2	+	lncRNA	chr19	37803738	37855347	ZNF875	+	protein_coding	508	same	1539_ID	chr19	37828138	37828645	508	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
10124	ENST00000592766.1_3	ENST00000644296.1_2	chr17	59537584	59540745	AC005901.1	-	lncRNA	chr17	59529782	59562471	TBX4	+	protein_coding	3161	opposite	379_ID	chr17	59537585	59540745	3161	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
10204	ENST00000595705.1_1	ENST00000656700.1_3	chr16	86380992	86383217	AC092327.2	+	lncRNA	chr16	86365449	86383294	LINC00917	-	lncRNA	2225	opposite	3077_ID	chr16	86380993	86383217	2225	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	8
10304	ENST00000598220.1_1	ENST00000425629.8_4	chr19	52022984	52023514	AC020914.1	+	lncRNA	chr19	52021072	52034924	SIGLEC6	-	protein_coding	530	opposite	1756_ID	chr19	52022985	52023514	530	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	8
10344	ENST00000599484.1_3	ENST00000599386.5_2	chr19	39625521	39627103	AC011443.1	-	lncRNA	chr19	39616473	39673456	PAK4	+	protein_coding	1582	opposite	1210_ID	chr19	39625522	39627103	1582	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
10347	ENST00000599511.1_1	ENST00000296144.3_3	chr3	46598887	46601178	LRRC2-AS1	+	lncRNA	chr3	46559838	46621589	LRRC2	-	protein_coding	2297	opposite	7859_ID	chr3	46598888	46601178	2291	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
10360	ENST00000599962.2_2	ENST00000291560.7_4	chr21	44985062	44985529	H2BS1	+	protein_coding	chr21	44949065	45079369	HSF2BP	-	protein_coding	467	opposite	7211_ID	chr21	44985063	44985529	467	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
10429	ENST00000602262.1_1	ENST00000602122.5_1	chr19	35753748	35755707	AC002128.1	+	lncRNA	chr19	35739294	35758865	LSR	+	protein_coding	1959	same	41_ID	chr19	35753749	35755707	1959	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
10441	ENST00000602342.1_1	ENST00000349841.10_2	chr3	169494979	169498122	AC078795.1	-	lncRNA	chr3	169491183	169507504	MYNN	+	protein_coding	3143	opposite	2585_ID	chr3	169494980	169498122	3143	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	8
10462	ENST00000602500.1_3	ENST00000648580.1_5	chr6	5665217	5695505	AL022097.1	-	lncRNA	chr6	5261731	5829425	FARS2	+	nonsense_mediated_decay	30288	opposite	4469_ID	chr6	5665218	5695505	30288	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
10474	ENST00000602607.1_1	ENST00000373943.9_2	chr1	28100368	28100552	AL020997.2	+	lncRNA	chr1	28099729	28150954	STX12	+	protein_coding	184	same	4441_ID	chr1	28100369	28100552	184	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
10475	ENST00000602609.1_1	ENST00000536163.6_5	chr7	141362721	141363646	AC004918.3	-	lncRNA	chr7	141356527	141401966	DENND11	-	protein_coding	925	same	197_ID	chr7	141362722	141363646	925	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
10478	ENST00000602618.1_1	ENST00000539719.6_2	chr1	33726812	33727281	AL513327.2	+	lncRNA	chr1	33722092	33766320	ZNF362	+	protein_coding	469	same	5709_ID	chr1	33726813	33727281	469	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
10483	ENST00000602674.1_3	ENST00000648580.1_5	chr6	5451915	5458266	AL021328.1	-	lncRNA	chr6	5261731	5829425	FARS2	+	nonsense_mediated_decay	6393	opposite	4445_ID	chr6	5451916	5458266	6351	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
10493	ENST00000602747.1_1	ENST00000420696.7_3	chr1	164649321	164650036	AL391001.1	+	lncRNA	chr1	164528420	164821068	PBX1	+	protein_coding	715	same	5566_ID	chr1	164649322	164650036	715	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
10500	ENST00000602779.1_1	ENST00000618298.6_3	chr16	87396141	87401082	AC010531.5	+	lncRNA	chr16	87364416	87423456	FBXO31	-	protein_coding	4941	opposite	1095_ID	chr16	87396142	87401082	4941	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
10510	ENST00000602842.1	ENST00000436535.4_4	chr17	40190249	40190752	CTD-2132N18.4	-	sense_intronic	chr17	40178914	40250497	ZNF385C	-	protein_coding	503	same	6735_ID	chr17	40190250	40190752	503	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
10511	ENST00000602843.1_1	ENST00000373943.9_2	chr1	28146493	28146852	AL020997.3	+	lncRNA	chr1	28099729	28150954	STX12	+	protein_coding	359	same	4442_ID	chr1	28146494	28146852	359	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
10583	ENST00000604161.1_3	ENST00000602122.5_1	chr19	35742342	35744542	AC002128.2	-	lncRNA	chr19	35739294	35758865	LSR	+	protein_coding	2200	opposite	42_ID	chr19	35742343	35744542	2200	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
10621	ENST00000605082.1_1	ENST00000393593.8_4	chr4	185393077	185393763	AC099343.2	-	lncRNA	chr4	185308882	185395704	IRF2	-	protein_coding	686	same	3357_ID	chr4	185393078	185393763	686	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
10675	ENST00000606160.1_1	ENST00000607033.5_3	chr6	133861921	133862312	AL450270.1	+	lncRNA	chr6	133823389	134210120	TARID	-	lncRNA	391	opposite	5653_ID	chr6	133861922	133862312	391	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
10705	ENST00000606438.1	ENST00000374049.4_2	chr9	117378826	117378895	AL160275.1	+	miRNA	chr9	117373485	117408702	TMEM268	+	protein_coding	69	same	5137_ID	chr9	117378827	117378895	69	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
10709	ENST00000606457.1_1	ENST00000649416.1_3	chr8	104493493	104493847	AC012213.4	-	lncRNA	chr8	104410885	104514123	AC012213.5	-	protein_coding	354	same	1350_ID	chr8	104493494	104493847	354	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
10731	ENST00000606641.1	ENST00000234831.10_5	chr1	54492355	54494172	RP4-758J24.5	-	lincRNA	chr1	54492353	54518877	TMEM59	-	protein_coding	1817	same	11944_ID	chr1	54492356	54494172	1817	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	8	8
10740	ENST00000606772.1_1	ENST00000262493.12_5	chr16	56385797	56387436	AC009102.2	-	lncRNA	chr16	56225400	56391356	GNAO1	+	protein_coding	1639	opposite	878_ID	chr16	56385798	56387436	1639	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
10754	ENST00000606899.1_2	ENST00000466256.6_1	chr1	17230833	17231271	BX284668.6	-	lncRNA	chr1	17066767	17267929	CROCC	+	processed_transcript	438	opposite	6456_ID	chr1	17230834	17231271	438	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
10779	ENST00000607148.1_1	ENST00000414318.2_3	chr3	18450171	18451127	AC144521.1	-	lncRNA	chr3	17201863	18486309	TBC1D5	-	processed_transcript	956	same	4226_ID	chr3	18450172	18451127	956	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
10833	ENST00000607586.1	ENST00000357085.5_3	chr6	25990988	25991454	U91328.20	+	lincRNA	chr6	25963029	25991459	TRIM38	+	protein_coding	466	same	12838_ID	chr6	25990989	25991454	466	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	8	8
10847	ENST00000607706.1_1	ENST00000518322.6_3	chr8	94727605	94728341	AC120053.1	-	lncRNA	chr8	94712777	94743755	CIBAR1	+	protein_coding	736	opposite	3959_ID	chr8	94727606	94728341	736	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
10852	ENST00000607752.1_1	ENST00000420696.7_3	chr1	164797672	164799189	AL357568.1	+	lncRNA	chr1	164528420	164821068	PBX1	+	protein_coding	1517	same	5428_ID	chr1	164797673	164799189	1517	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
10863	ENST00000607876.2_4	ENST00000648086.1_3	chr6	169826514	169852570	AL135910.1	-	lncRNA	chr6	169820063	170102143	AL031315.1	-	protein_coding	26056	same	4878_ID	chr6	169826515	169852570	26056	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
10870	ENST00000607951.1_1	ENST00000545121.5_1	chr1	111723995	111724113	AL355816.1	-	lncRNA	chr1	111682248	111727724	CEPT1	+	protein_coding	118	opposite	5355_ID	chr1	111723996	111724113	118	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
10915	ENST00000608390.1_1	ENST00000626474.3_5	chr3	72227429	72227961	AC112219.2	+	lncRNA	chr3	72084912	72328654	LINC00877	-	lncRNA	532	opposite	3814_ID	chr3	72227430	72227961	532	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
10963	ENST00000608963.1_1	ENST00000223210.5_2	chr7	149555488	149559581	AC004877.1	-	lncRNA	chr7	149535463	149564568	ZNF862	+	protein_coding	4093	opposite	188_ID	chr7	149555489	149559581	4093	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
10987	ENST00000609276.2_1	ENST00000651706.1_1	chr1	220998961	220999405	RNU6ATAC35P	+	lncRNA	chr1	220960331	221057845	AL445423.3	+	nonsense_mediated_decay	444	same	11679_ID	chr1	220998962	220999405	444	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
11049	ENST00000609941.1_1	ENST00000651706.1_1	chr1	221002017	221002553	AL445423.1	-	lncRNA	chr1	220960331	221057845	AL445423.3	+	nonsense_mediated_decay	536	opposite	5622_ID	chr1	221002018	221002553	536	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
11055	ENST00000609958.1_1	ENST00000537045.5_3	chr22	19033674	19035888	DGCR11	-	lncRNA	chr22	19023794	19109967	DGCR2	-	protein_coding	2214	same	6791_ID	chr22	19033675	19035888	2214	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
11066	ENST00000610050.1_1	ENST00000611222.1_2	chr22	50644013	50644491	AL022328.1	-	lncRNA	chr22	50639407	50656044	SELENOO	+	protein_coding	478	opposite	4481_ID	chr22	50644014	50644491	478	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
11081	ENST00000610199.1_1	ENST00000382152.7_9	chr4	20768430	20768995	AC097505.1	+	lncRNA	chr4	20730228	21950395	KCNIP4	-	protein_coding	565	opposite	3322_ID	chr4	20768431	20768995	565	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
11127	ENST00000611171.1_1	ENST00000591471.5_1	chr19	37805769	37806522	AC016590.3	-	lncRNA	chr19	37803738	37855347	ZNF875	+	protein_coding	753	opposite	1540_ID	chr19	37805770	37806522	753	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
11143	ENST00000611482.1_1	ENST00000355994.7_7	chr18	74824595	74827682	AC018529.2	+	lncRNA	chr18	74690788	74844739	MBP	-	protein_coding	3125	opposite	1631_ID	chr18	74824596	74827682	3087	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
11181	ENST00000612699.1_1	ENST00000647744.2_4	chr13	47048380	47067403	AL138686.1	+	lncRNA	chr13	47029266	47090093	LINC01198	-	lncRNA	19023	opposite	4963_ID	chr13	47048381	47067403	19023	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
11204	ENST00000613063.1_1	ENST00000355994.7_7	chr18	74805041	74805402	AC018529.1	+	lncRNA	chr18	74690788	74844739	MBP	-	protein_coding	361	opposite	1630_ID	chr18	74805042	74805402	361	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
11209	ENST00000613251.1_3	ENST00000668394.1_1	chrX	34147874	34150431	FAM47A	-	protein_coding	chrX	33744462	34364644	AL591501.1	+	lncRNA	2559	opposite	6987_ID	chrX	34147875	34150431	2557	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
11214	ENST00000613285.1_1	ENST00000263620.3	chr19	956484	958149	AC005391.1	+	lncRNA	chr19	925999	975939	ARID3A	+	protein_coding	1665	same	292_ID	chr19	956485	958149	1665	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
11226	ENST00000613535.1_1	ENST00000313005.10_3	chr11	117167720	117168044	AP000892.3	-	lncRNA	chr11	117155922	117186972	BACE1	-	protein_coding	324	same	6046_ID	chr11	117167721	117168044	324	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
11235	ENST00000613826.1_1	ENST00000369151.8_4	chr10	120451872	120453047	AL139407.1	-	lncRNA	chr10	120435922	120514482	CACUL1	-	protein_coding	1175	same	5048_ID	chr10	120451873	120453047	1175	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
11288	ENST00000614983.1_1	ENST00000431375.6_1	chr16	4476902	4477381	AC012676.3	+	lncRNA	chr16	4475805	4506773	DNAJA3	+	protein_coding	479	same	1426_ID	chr16	4476903	4477381	479	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
11309	ENST00000615671.2_2	ENST00000380877.8_5	chr15	50641132	50647058	GABPB1-IT1	-	lncRNA	chr15	50567585	50647395	GABPB1	-	protein_coding	5926	same	7097_ID	chr15	50641133	50647058	5926	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
11344	ENST00000616335.1_1	ENST00000565367.5_1	chr15	55635338	55635773	AC018926.1	-	lncRNA	chr15	55611157	55647845	PIGB	+	nonsense_mediated_decay	435	opposite	1673_ID	chr15	55635339	55635773	435	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
11351	ENST00000616598.1_1	ENST00000261721.9_4	chr15	83688866	83689554	AC022558.3	+	lncRNA	chr15	83685174	83736004	BTBD1	-	protein_coding	688	opposite	1889_ID	chr15	83688867	83689554	688	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
11362	ENST00000616838.1_1	ENST00000431375.6_1	chr16	4480522	4481104	AC012676.4	+	lncRNA	chr16	4475805	4506773	DNAJA3	+	protein_coding	582	same	1427_ID	chr16	4480523	4481104	582	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
11371	ENST00000616960.4_1	ENST00000414318.2_3	chr3	18054717	18083095	AC132807.2	+	lncRNA	chr3	17201863	18486309	TBC1D5	-	processed_transcript	28378	opposite	4103_ID	chr3	18054718	18083095	28378	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
11405	ENST00000617897.2_6	ENST00000616694.1_3	chr17	34324617	34328592	CCL15	-	protein_coding	chr17	34310691	34328667	CCL15-CCL14	-	nonsense_mediated_decay	5117	same	6581_ID	chr17	34324618	34328592	3975	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	8
11420	ENST00000618391.1_4	ENST00000626474.3_5	chr3	72129714	72133792	AC105265.3	-	lncRNA	chr3	72084912	72328654	LINC00877	-	lncRNA	4078	same	3609_ID	chr3	72129715	72133792	4078	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
11437	ENST00000618841.1_1	ENST00000565367.5_1	chr15	55638544	55638950	AC018926.3	-	lncRNA	chr15	55611157	55647845	PIGB	+	nonsense_mediated_decay	406	opposite	1676_ID	chr15	55638545	55638950	406	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
11478	ENST00000619686.1_1	ENST00000288207.7_2	chr15	59407745	59408288	AC092757.3	-	lncRNA	chr15	59397344	59417244	CCNB2	+	protein_coding	543	opposite	3145_ID	chr15	59407746	59408288	543	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
11535	ENST00000620908.1_1	ENST00000217188.1_3	chr20	62174763	62175091	AL121829.2	+	lncRNA	chr20	62172162	62178857	SRMS	-	protein_coding	328	opposite	4758_ID	chr20	62174764	62175091	328	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	8
11569	ENST00000621575.1_1	ENST00000434425.5_1	chr13	34420326	34424962	AL161891.1	+	lncRNA	chr13	34392205	34540695	RFC3	+	protein_coding	65892	same	5178_ID	chr13	34420327	34424962	4636	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
11572	ENST00000621598.1_1	ENST00000324238.7_4	chr17	29130671	29131095	AC127024.6	+	lncRNA	chr17	29109701	29151710	CRLF3	-	protein_coding	424	opposite	4030_ID	chr17	29130672	29131095	424	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
11629	ENST00000622780.1_1	ENST00000667361.1_1	chr20	54121443	54121753	AL160413.1	-	lncRNA	chr20	54039546	54259973	LINC01440	+	lncRNA	310	opposite	5146_ID	chr20	54121444	54121753	310	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
11636	ENST00000622906.1_1	ENST00000614596.2_3	chr22	18864572	18866107	AC011718.1	+	lncRNA	chr22	18861055	18881920	FAM230F	-	lncRNA	1535	opposite	1283_ID	chr22	18864573	18866107	1535	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	8
11751	ENST00000627075.1_3	ENST00000636155.1_1	chr10	95532437	95548362	AL358154.1	-	lncRNA	chr10	95517784	95565891	LGI1	+	protein_coding	15925	opposite	5444_ID	chr10	95532438	95548362	15925	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	8
11752	ENST00000627304.1_4	ENST00000650599.1_1	chr6	149897224	149912000	AL078581.4	-	lncRNA	chr6	149887429	149912884	GINM1	+	nonsense_mediated_decay	14776	opposite	4659_ID	chr6	149897225	149912000	14776	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	8
11755	ENST00000627566.1_1	ENST00000382152.7_9	chr4	21844963	21854811	KCNIP4-IT1	-	lncRNA	chr4	20730228	21950395	KCNIP4	-	protein_coding	9848	same	7418_ID	chr4	21844964	21854811	9848	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
11780	ENST00000629517.1_1	ENST00000537045.5_3	chr22	19048553	19049356	AC004461.2	-	lncRNA	chr22	19023794	19109967	DGCR2	-	protein_coding	803	same	128_ID	chr22	19048554	19049356	803	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
11789	ENST00000630399.1_1	ENST00000318636.8_2	chrX	15803838	15805712	INE2	-	lncRNA	chrX	15756392	15806534	CA5B	+	protein_coding	1874	opposite	7356_ID	chrX	15803839	15805712	1874	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	8	8
11799	ENST00000630920.1_1	ENST00000645215.1_1	chr8	128412643	128414395	CCAT2	+	lncRNA	chr8	128334449	128431295	PCAT1	+	lncRNA	1752	same	6562_ID	chr8	128412644	128414395	1752	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
11807	ENST00000632346.1_3	ENST00000259727.5_2	chr6	16259331	16263157	AL009031.1	-	lncRNA	chr6	16238817	16295780	GMPR	+	protein_coding	5453	opposite	4437_ID	chr6	16259332	16263157	3826	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
11882	ENST00000637785.1_1	ENST00000636317.1_4	chrX	21149613	21181844	BX088723.1	+	lncRNA	chrX	20892285	21392184	AL807742.1	-	lncRNA	32231	opposite	6447_ID	chrX	21149614	21181844	32231	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
11893	ENST00000638002.1_1	ENST00000401095.8_7	chr1	2690148	2693019	AC242022.1	+	lncRNA	chr1	2567414	2718282	TTC34	-	protein_coding	2871	opposite	4271_ID	chr1	2690149	2693019	2871	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
11896	ENST00000638108.1_3	ENST00000371837.5_3	chr10	91043450	91068657	IFIT2	+	protein_coding	chr10	90973325	91174314	LIPA	-	protein_coding	25578	opposite	7327_ID	chr10	91043451	91068657	25207	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
11905	ENST00000640161.1_1	ENST00000640877.1_1	chr12	5069278	5072616	AC006063.2	+	lncRNA	chr12	5019032	5135178	AC005906.2	+	lncRNA	3338	same	409_ID	chr12	5069279	5072616	3338	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
11991	ENST00000643472.1_1	ENST00000506734.5_1	chr5	69351646	69353243	AC140134.1	-	lncRNA	chr5	69345483	69373423	SMN2	+	nonsense_mediated_decay	1597	opposite	4219_ID	chr5	69351647	69353243	1597	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
11996	ENST00000644544.1_3	ENST00000486319.5_4	chr7	102178863	102184296	UPK3BL2	-	protein_coding	chr7	102178366	102213096	POLR2J3	-	nonsense_mediated_decay	5433	same	12851_ID	chr7	102178864	102184296	5433	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	8
11998	ENST00000644669.1_3	ENST00000331340.8_4	chr7	50456186	50467795	AC124014.1	-	lncRNA	chr7	50344311	50472799	IKZF1	+	protein_coding	11609	opposite	3995_ID	chr7	50456187	50467795	11609	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	8
11999	ENST00000644923.2_5	ENST00000644718.1_1	chr6	8411667	8435778	SLC35B3	-	protein_coding	chr6	8158394	8760680	AL355499.2	+	lncRNA	24127	opposite	12089_ID	chr6	8411668	8435778	24111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
12018	ENST00000647581.1_3	ENST00000372141.7_3	chr10	83967375	83970101	AC010157.2	-	lncRNA	chr10	83634949	84746934	NRG3	+	protein_coding	2726	opposite	1021_ID	chr10	83967376	83970101	2726	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
12028	ENST00000647916.1_1	ENST00000556826.6_4	chr14	58045126	58067122	AL161804.1	+	lncRNA	chr14	58030637	58332810	SLC35F4	-	protein_coding	21996	opposite	5175_ID	chr14	58045127	58067122	21996	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
12119	ENST00000649108.1_3	ENST00000431708.1_3	chr2	189598881	189654831	DIRC1	-	lncRNA	chr2	189463517	189704171	AC092598.1	-	lncRNA	55950	same	6806_ID	chr2	189598882	189654831	55950	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
12124	ENST00000649184.1_1	ENST00000522208.6_4	chr5	179401583	179407186	AC010285.3	+	lncRNA	chr5	179338650	179498721	RNF130	-	protein_coding	5603	opposite	1048_ID	chr5	179401584	179407186	5603	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	8
12127	ENST00000649265.1_1	ENST00000642601.1_3	chr7	93940449	93976375	AC002074.2	+	lncRNA	chr7	93907991	94021508	AC002074.1	-	lncRNA	35926	opposite	35_ID	chr7	93940450	93976375	35926	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
12133	ENST00000649453.1_1	ENST00000580119.2_4	chr6	184338	186899	AL035696.4	+	lncRNA	chr6	181465	205519	AL035696.3	-	lncRNA	2561	opposite	4615_ID	chr6	184339	186899	2561	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	8
12161	ENST00000650118.1_3	ENST00000375587.8_3	chr9	95362375	95374650	AL157827.2	-	lncRNA	chr9	95088234	95382811	CENPP	+	protein_coding	12275	opposite	5076_ID	chr9	95362376	95374650	12275	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
12176	ENST00000650377.1_3	ENST00000466490.7_2	chr3	133518283	133524983	AC080128.2	-	lncRNA	chr3	133502866	133540336	SRPRB	+	protein_coding	6700	opposite	2705_ID	chr3	133518284	133524983	6700	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
12183	ENST00000650568.2_2	ENST00000626474.3_5	chr3	72200417	72256927	LINC00870	+	lncRNA	chr3	72084912	72328654	LINC00877	-	lncRNA	56541	opposite	7578_ID	chr3	72200418	72256927	56510	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
12209	ENST00000651073.1_3	ENST00000636006.1_2	chr4	57157766	57166039	AC022267.1	-	lncRNA	chr4	56916012	57180829	CRACD	+	protein_coding	8273	opposite	1843_ID	chr4	57157767	57166039	8273	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	8
12217	ENST00000651174.1_3	ENST00000374553.6_2	chrX	69257689	69259175	AL158141.1	-	lncRNA	chrX	68835910	69259319	EDA	+	protein_coding	1486	opposite	5098_ID	chrX	69257690	69259175	1486	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	8	8
12219	ENST00000651191.1_1	ENST00000422113.7_4	chr12	130107473	130109911	AC130404.2	+	lncRNA	chr12	129556270	130388570	TMEM132D	-	protein_coding	2438	opposite	4065_ID	chr12	130107474	130109911	2438	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
12233	ENST00000651604.1_3	ENST00000320805.8_3	chr16	28964136	28977757	AC109460.2	-	lncRNA	chr16	28962257	28978418	NFATC2IP	+	protein_coding	14068	opposite	3760_ID	chr16	28964137	28977757	13621	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	8
12242	ENST00000651798.1_1	ENST00000300305.7_4	chr21	36208582	36257179	AP000331.1	+	lncRNA	chr21	36160097	36421641	RUNX1	-	protein_coding	48597	opposite	5978_ID	chr21	36208583	36257179	48597	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	8
12249	ENST00000651961.1_3	ENST00000537625.1_3	chr12	13236465	13256601	GSG1	-	protein_coding	chr12	13214648	13295455	FAM234B	+	protein_coding	20152	opposite	7189_ID	chr12	13236466	13256601	20136	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
12266	ENST00000652305.1_1	ENST00000635546.1_3	chr12	54519974	54541267	LINC02381	+	lncRNA	chr12	54515062	54582792	SMUG1	-	nonsense_mediated_decay	21404	opposite	7767_ID	chr12	54519975	54541267	21293	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
12288	ENST00000652631.1_3	ENST00000652126.1_1	chr14	40736486	40817535	AL049828.2	-	lncRNA	chr14	39901810	40859751	AL049828.1	+	lncRNA	81049	opposite	4639_ID	chr14	40736487	40817535	81049	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	8
12356	ENST00000654480.1_1	ENST00000382897.2_3	chr18	53804803	53817333	AC006305.3	+	lncRNA	chr18	53670843	53858493	AC006305.1	-	lncRNA	12530	opposite	455_ID	chr18	53804804	53817333	12530	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
12364	ENST00000654765.1_3	ENST00000657880.1_1	chr2	123260941	123262694	AC073632.1	-	lncRNA	chr2	122660076	123645267	AC011246.1	+	lncRNA	1753	opposite	2541_ID	chr2	123260942	123262694	1753	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
12404	ENST00000655554.1_3	ENST00000299954.13_2	chr17	65654130	65655581	AC079331.3	-	lncRNA	chr17	65373396	65693377	PITPNC1	+	protein_coding	1451	opposite	2645_ID	chr17	65654131	65655581	1451	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
12451	ENST00000656565.1_3	ENST00000434391.6_1	chr1	26789246	26794505	DHDDS-AS1	-	lncRNA	chr1	26758772	26797785	DHDDS	+	nonsense_mediated_decay	5259	opposite	6792_ID	chr1	26789247	26794505	5259	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
12473	ENST00000657026.1_3	ENST00000377047.9_2	chr13	93961921	93963316	AL160159.1	-	lncRNA	chr13	93879059	95060274	GPC6	+	protein_coding	1395	opposite	5133_ID	chr13	93961922	93963316	1395	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
12475	ENST00000657045.1_1	ENST00000377602.5_4	chr10	17428934	17487757	ST8SIA6-AS1	+	lncRNA	chr10	17357419	17496594	ST8SIA6	-	protein_coding	58840	opposite	12562_ID	chr10	17428935	17487757	58823	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	8
12522	ENST00000657921.1_3	ENST00000254066.10_2	chr17	38473949	38474928	AC080112.4	-	lncRNA	chr17	38465431	38513895	RARA	+	protein_coding	979	opposite	2704_ID	chr17	38473950	38474928	979	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
12529	ENST00000658037.1_1	ENST00000281156.5_4	chr6	62580001	62603787	AL355347.1	+	lncRNA	chr6	62389865	62996130	KHDRBS2	-	protein_coding	23786	opposite	5335_ID	chr6	62580002	62603787	23786	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
12546	ENST00000658333.1_1	ENST00000328914.5_2	chr7	4765070	4768352	AC092428.1	+	lncRNA	chr7	4721925	4811073	FOXK1	+	protein_coding	3282	same	3091_ID	chr7	4765071	4768352	3282	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
12563	ENST00000658587.1_1	ENST00000675388.1_1	chr8	130253473	130254715	AC103833.2	+	lncRNA	chr8	129675266	130587261	CCDC26	-	lncRNA	1242	opposite	3476_ID	chr8	130253474	130254715	1242	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
12577	ENST00000658822.1_3	ENST00000367202.9_4	chr1	204110531	204112455	ERLNC1	+	lncRNA	chr1	204100189	204121172	ETNK2	-	protein_coding	1924	opposite	6928_ID	chr1	204110532	204112455	1924	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	8
12622	ENST00000659675.1_1	ENST00000382152.7_9	chr4	21306090	21352296	AC110296.1	+	lncRNA	chr4	20730228	21950395	KCNIP4	-	protein_coding	46206	opposite	3786_ID	chr4	21306091	21352296	46206	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
12655	ENST00000660385.1_1	ENST00000446896.7_3	chr2	152653201	152655202	AC097448.1	+	lncRNA	chr2	152645591	152684955	ARL5A	-	nonsense_mediated_decay	2001	opposite	3312_ID	chr2	152653202	152655202	2001	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
12677	ENST00000660907.1_1	ENST00000466256.6_1	chr1	17198775	17210154	BX284668.2	+	lncRNA	chr1	17066767	17267929	CROCC	+	processed_transcript	12715	same	6454_ID	chr1	17198776	17210154	11379	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
12684	ENST00000661054.1_1	ENST00000650631.1_3	chr1	168867870	168872074	AL135926.2	+	lncRNA	chr1	168665111	169072514	AL135926.1	-	lncRNA	4204	opposite	4880_ID	chr1	168867871	168872074	4204	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
12689	ENST00000661109.1_3	ENST00000537140.5_3	chr11	115203247	115204137	AP000465.1	-	lncRNA	chr11	115039955	115375241	CADM1	-	processed_transcript	890	same	5992_ID	chr11	115203248	115204137	890	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
12695	ENST00000661218.1_3	ENST00000652942.1_1	chr22	34587182	34606553	Z68323.1	-	lncRNA	chr22	34413414	34614783	LINC01643	+	lncRNA	19371	opposite	12931_ID	chr22	34587183	34606553	19371	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	8
12732	ENST00000662099.1_1	ENST00000409573.7_5	chr2	112997197	113001952	AC092645.2	+	lncRNA	chr2	112969105	113012619	ZC3H8	-	protein_coding	4755	opposite	3113_ID	chr2	112997198	113001952	4755	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
12778	ENST00000663134.1_1	ENST00000650631.1_3	chr1	168753249	168762124	LINC00626	+	lncRNA	chr1	168665111	169072514	AL135926.1	-	lncRNA	8875	opposite	7567_ID	chr1	168753250	168762124	8875	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
12784	ENST00000663221.1_3	ENST00000648171.1_1	chr8	122681173	122709802	LINC02855	-	lncRNA	chr8	122651549	122916512	HAS2-AS1	+	lncRNA	28667	opposite	7808_ID	chr8	122681174	122709802	28629	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
12790	ENST00000663271.1_1	ENST00000382897.2_3	chr18	53730433	53802526	LINC01905	+	lncRNA	chr18	53670843	53858493	AC006305.1	-	lncRNA	103466	opposite	7698_ID	chr18	53730434	53802526	72093	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
12808	ENST00000663738.1_3	ENST00000356607.9_2	chr1	10672278	10676509	AL139423.2	-	lncRNA	chr1	10535006	10690815	PEX14	+	protein_coding	4231	opposite	5050_ID	chr1	10672279	10676509	4231	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
12819	ENST00000664019.1_3	ENST00000262493.12_5	chr16	56316797	56333263	AC009102.4	-	lncRNA	chr16	56225400	56391356	GNAO1	+	protein_coding	16466	opposite	879_ID	chr16	56316798	56333263	16466	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
12849	ENST00000664650.1_1	ENST00000355917.7_4	chr6	15556010	15560211	AL021978.1	+	lncRNA	chr6	15523040	15663289	DTNBP1	-	protein_coding	4201	opposite	4466_ID	chr6	15556011	15560211	4201	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
12857	ENST00000664764.1_1	ENST00000295049.9_4	chr2	198505164	198506298	AC020550.2	+	lncRNA	chr2	198432947	198540311	RFTN2	-	protein_coding	1134	opposite	1707_ID	chr2	198505165	198506298	1134	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
12907	ENST00000665745.1_1	ENST00000414318.2_3	chr3	17784443	17787157	AC104451.2	+	lncRNA	chr3	17201863	18486309	TBC1D5	-	processed_transcript	2714	opposite	3536_ID	chr3	17784444	17787157	2714	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
12936	ENST00000666511.1_3	ENST00000650173.1_1	chr6	139756772	139795736	LINC01625	-	lncRNA	chr6	139592498	139828735	AL592429.2	+	lncRNA	39023	opposite	7661_ID	chr6	139756773	139795736	38964	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
12954	ENST00000666855.1_3	ENST00000355377.7_3	chr16	19192069	19195382	AC010494.1	-	lncRNA	chr16	19179561	19279654	SYT17	+	protein_coding	3313	opposite	1085_ID	chr16	19192070	19195382	3313	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	8
12996	ENST00000667786.1_3	ENST00000434783.3	chr22	20703047	20708677	AC007731.5	-	lncRNA	chr22	20692437	20716938	FAM230A	+	protein_coding	5630	opposite	645_ID	chr22	20703048	20708677	5630	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	8
13033	ENST00000668733.1_3	ENST00000382152.7_9	chr4	21522476	21525332	AC096576.7	-	lncRNA	chr4	20730228	21950395	KCNIP4	-	protein_coding	2856	same	3279_ID	chr4	21522477	21525332	2856	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
13116	ENST00000670460.1_1	ENST00000600123.5_4	chr19	58859083	58866821	A1BG-AS1	+	lncRNA	chr19	58858219	58867591	AC012313.3	-	lncRNA	7738	opposite	1_ID	chr19	58859084	58866821	7738	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	8
13117	ENST00000670476.1_3	ENST00000644718.1_1	chr6	8342169	8389114	AL359378.1	-	lncRNA	chr6	8158394	8760680	AL355499.2	+	lncRNA	47247	opposite	5482_ID	chr6	8342170	8389114	46945	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
13126	ENST00000670694.1_3	ENST00000355994.7_7	chr18	74754819	74756695	AC093330.3	+	lncRNA	chr18	74690788	74844739	MBP	-	protein_coding	1876	opposite	3198_ID	chr18	74754820	74756695	1876	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
13146	ENST00000671131.1_3	ENST00000380934.8_3	chr9	14317071	14358489	AL136366.1	+	lncRNA	chr9	14087858	14398982	NFIB	-	protein_coding	41418	opposite	4905_ID	chr9	14317072	14358489	41418	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
13169	ENST00000671472.1_3	ENST00000466256.6_1	chr1	17214255	17216201	BX284668.5	-	lncRNA	chr1	17066767	17267929	CROCC	+	processed_transcript	2130	opposite	6455_ID	chr1	17214256	17216201	1946	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
13188	ENST00000673812.1_2	ENST00000649137.1_1	chr9	16982720	16989645	AL358117.1	-	lncRNA	chr9	16917508	17049039	AL162725.2	+	lncRNA	6925	opposite	5442_ID	chr9	16982721	16989645	6925	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	8
27310	ENST00000292896.3_4	ENST00000380259.7_5	chr11	5289574	5526882	HBE1	-	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	237308	same	7218_ID	chr11	5289575	5526882	237308	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	6	8
29610	ENST00000296575.8_2	ENST00000649263.1_3	chr4	145567307	145666423	HHIP	+	protein_coding	chr4	145131853	146019326	AC098588.2	-	nonsense_mediated_decay	99116	opposite	7232_ID	chr4	145567308	145666423	99116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
102610	ENST00000363567.1	ENST00000395930.6_4	chr17	15214661	15214768	RNU6-799P	+	snRNA	chr17	15207128	15244914	TEKT3	-	protein_coding	107	opposite	11509_ID	chr17	15214662	15214768	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
16651	ENST00000383893.1	ENST00000319942.8_2	chr1	76252756	76252835	SNORD45C	+	snoRNA	chr1	76251940	76260771	RABGGTB	+	protein_coding	79	same	12411_ID	chr1	76252757	76252835	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
18531	ENST00000384441.1	ENST00000304081.8_3	chr2	18764632	18764734	RNU6-1215P	-	snRNA	chr2	18744137	18770835	NT5C1B	-	protein_coding	102	same	10918_ID	chr2	18764633	18764734	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	8
19431	ENST00000384659.1	ENST00000466256.6_1	chr1	17067010	17067174	RNU1-4	+	snRNA	chr1	17066767	17267929	CROCC	+	processed_transcript	164	same	10585_ID	chr1	17067011	17067174	164	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
28591	ENST00000408610.1	ENST00000556275.5_4	chr14	64561741	64561843	MIR548H1	-	miRNA	chr14	64550949	64761128	ESR2	-	protein_coding	102	same	8900_ID	chr14	64561742	64561843	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
31101	ENST00000410528.1	ENST00000541176.2_3	chr20	34231064	34231384	RN7SKP271	+	misc_RNA	chr20	34220261	34262466	AL109827.1	-	nonsense_mediated_decay	320	opposite	9870_ID	chr20	34231065	34231384	320	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
31781	ENST00000410878.1	ENST00000373589.9_4	chrX	71596828	71597019	RNU2-68P	-	snRNA	chrX	71549409	71792951	HDAC8	-	protein_coding	191	same	10652_ID	chrX	71596829	71597019	191	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	8
36381	ENST00000420726.6_4	ENST00000380259.7_5	chr11	5324673	5526843	OR51B5	-	processed_transcript	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	202209	same	9408_ID	chr11	5324674	5526843	202170	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	6	8
36651	ENST00000421415.5_3	ENST00000311841.7_4	chr1	54638008	54665683	CYB5RL	-	nonsense_mediated_decay	chr1	54609064	54665746	AL357673.1	-	nonsense_mediated_decay	30386	same	6750_ID	chr1	54638009	54665683	27675	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	8
45491	ENST00000446489.1_3	ENST00000429746.2_4	chr11	1784238	1784979	AC068580.1	-	lncRNA	chr11	1773984	1785803	CTSD	-	protein_coding	1017	same	2419_ID	chr11	1784239	1784979	741	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
45881	ENST00000447643.1_3	ENST00000454572.1_3	chr7	44043644	44047465	AC004951.1	-	lncRNA	chr7	43991508	44058750	AC004951.4	-	lncRNA	3821	same	204_ID	chr7	44043645	44047465	3821	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
51911	ENST00000462717.1_1	ENST00000394431.6_3	chr3	63997639	64001922	PSMD6-AS1	+	lncRNA	chr3	63996225	64009686	PSMD6	-	protein_coding	4283	opposite	9669_ID	chr3	63997640	64001922	4283	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
54341	ENST00000478699.2	ENST00000361906.8_4	chr22	38627725	38627999	RN7SL704P	+	misc_RNA	chr22	38615297	38669016	TMEM184B	-	protein_coding	274	opposite	10374_ID	chr22	38627726	38627999	274	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
59811	ENST00000509356.2_2	ENST00000449528.5_3	chr7	90098952	90142711	AC002456.2	+	protein_coding	chr7	90095737	90419943	CDK14	+	protein_coding	43759	same	51_ID	chr7	90098953	90142711	43759	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
60821	ENST00000512359.1_3	ENST00000649263.1_3	chr4	145564523	145582509	HHIP-AS1	-	lncRNA	chr4	145131853	146019326	AC098588.2	-	nonsense_mediated_decay	18436	same	7233_ID	chr4	145564524	145582509	17986	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
64941	ENST00000516740.1	ENST00000541176.2_3	chr20	34235249	34235352	RNU6-759P	-	snRNA	chr20	34220261	34262466	AL109827.1	-	nonsense_mediated_decay	103	same	11480_ID	chr20	34235250	34235352	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
67231	ENST00000517505.1_3	ENST00000665012.1_3	chr8	91605031	91618293	LINC01030	-	lncRNA	chr8	91210616	91632305	AC004083.1	-	lncRNA	13262	same	7593_ID	chr8	91605032	91618293	13262	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
82291	ENST00000568324.1_1	ENST00000649263.1_3	chr4	145427051	145430153	AC106871.1	+	lncRNA	chr4	145131853	146019326	AC098588.2	-	nonsense_mediated_decay	3102	opposite	3665_ID	chr4	145427052	145430153	3102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
88181	ENST00000579342.1	ENST00000665012.1_3	chr8	91475554	91475604	AF070718.1	-	miRNA	chr8	91210616	91632305	AC004083.1	-	lncRNA	50	same	4377_ID	chr8	91475555	91475604	50	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
91131	ENST00000580923.1	ENST00000411863.2_2	chr7	55960418	55960689	RN7SL64P	+	misc_RNA	chr7	55955229	56010223	ZNF713	+	nonsense_mediated_decay	271	same	10334_ID	chr7	55960419	55960689	271	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
92261	ENST00000581654.1	ENST00000420455.5_3	chr21	34836772	34836865	AP000301.1	+	miRNA	chr21	34804791	34852250	TMEM50B	-	nonsense_mediated_decay	93	opposite	5971_ID	chr21	34836773	34836865	93	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
103351	ENST00000598988.1_1	ENST00000269980.7_2	chr19	41905276	41906270	AC011462.3	+	lncRNA	chr19	41903722	41930907	BCKDHA	+	protein_coding	994	same	1221_ID	chr19	41905277	41906270	994	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
105781	ENST00000603816.1_3	ENST00000619655.4_3	chr17	34084217	34085344	AC006237.1	-	lncRNA	chr17	34083268	34122711	MMP28	-	nonsense_mediated_decay	1127	same	443_ID	chr17	34084218	34085344	1127	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
106461	ENST00000605587.2_4	ENST00000619655.4_3	chr17	34087905	34092098	C17orf50	+	protein_coding	chr17	34083268	34122711	MMP28	-	nonsense_mediated_decay	4193	opposite	6487_ID	chr17	34087906	34092098	4193	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
106841	ENST00000606180.1_1	ENST00000397057.6_3	chr2	178165327	178166734	AC019080.3	+	lncRNA	chr2	178148235	178257415	AC019080.1	-	lncRNA	1407	opposite	1683_ID	chr2	178165328	178166734	1407	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
106881	ENST00000606200.1_1	ENST00000397057.6_3	chr2	178171100	178175300	AC019080.4	+	lncRNA	chr2	178148235	178257415	AC019080.1	-	lncRNA	4200	opposite	1685_ID	chr2	178171101	178175300	4200	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
114881	ENST00000619715.1_1	ENST00000429354.3_3	chr19	52142730	52143184	AC018755.4	-	lncRNA	chr19	52115343	52150142	AC018755.2	-	protein_coding	454	same	1659_ID	chr19	52142731	52143184	454	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
114961	ENST00000619883.1_1	ENST00000540184.5_1	chr12	2994984	2995495	AC005911.1	+	lncRNA	chr12	2986388	3043728	TULP3	+	nonsense_mediated_decay	511	same	383_ID	chr12	2994985	2995495	511	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
115461	ENST00000620937.1_1	ENST00000398519.9_5	chr17	80202645	80203467	AC132872.3	+	lncRNA	chr17	80197602	80231304	CSNK1D	-	protein_coding	822	opposite	4104_ID	chr17	80202646	80203467	822	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
117191	ENST00000624891.1_1	ENST00000397057.6_3	chr2	178182442	178183199	AC019080.5	-	lncRNA	chr2	178148235	178257415	AC019080.1	-	lncRNA	757	same	1688_ID	chr2	178182443	178183199	757	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
122781	ENST00000652380.1_3	ENST00000429238.2_4	chr21	35275758	35288118	ATP5PO	-	nonsense_mediated_decay	chr21	34956992	35303911	AP000311.1	-	protein_coding	12362	same	6378_ID	chr21	35275759	35288118	12360	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
122881	ENST00000652520.1_2	ENST00000454572.1_3	chr7	44037495	44048457	SPDYE1	+	protein_coding	chr7	43991508	44058750	AC004951.4	-	lncRNA	12226	opposite	12516_ID	chr7	44037496	44048457	10962	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
127831	ENST00000663020.1_3	ENST00000604534.5_2	chr1	95627231	95699513	AC092802.1	-	lncRNA	chr1	95583478	95710511	TLCD4-RWDD3	+	protein_coding	72307	opposite	3151_ID	chr1	95627232	95699513	72282	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	8
128531	ENST00000664551.1_1	ENST00000338087.10_4	chr8	134067203	134070012	PTCSC1	+	lncRNA	chr8	134048972	134114846	SLA	-	protein_coding	2809	opposite	9672_ID	chr8	134067204	134070012	2809	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
131891	ENST00000671986.2_4	ENST00000579700.1_2	chr7	76651635	76661678	SPDYE17	-	protein_coding	chr7	76610418	76673092	DTX2P1-UPK3BP1-PMS2P11	+	lncRNA	10043	opposite	12519_ID	chr7	76651636	76661678	10043	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
130610	ENST00000365049.1	ENST00000650360.1_1	chr1	22314308	22314412	RNU6-1022P	+	snRNA	chr1	22310098	22357110	AL590556.3	+	lncRNA	104	same	10773_ID	chr1	22314309	22314412	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
3677	ENST00000421759.1_1	ENST00000422269.1_5	chr2	47294960	47298343	AC073283.1	+	lncRNA	chr2	47293079	47403650	AC073283.3	-	nonsense_mediated_decay	3383	opposite	2516_ID	chr2	47294961	47298343	3383	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
44951	ENST00000445224.6_3	ENST00000638749.1_3	chr3	159557649	159615149	SCHIP1	+	protein_coding	chr3	158991032	159615155	IQCJ-SCHIP1	+	protein_coding	57500	same	12008_ID	chr3	159557650	159615149	57500	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	8
5541	ENST00000485776.2	ENST00000650360.1_1	chr1	22313973	22314268	RN7SL386P	+	misc_RNA	chr1	22310098	22357110	AL590556.3	+	lncRNA	295	same	10146_ID	chr1	22313974	22314268	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	8
58942	ENST00000506599.2_5	ENST00000372003.6_2	chr1	46641157	46642160	P3R3URF	-	protein_coding	chr1	46640758	46651634	TSPAN1	+	protein_coding	1003	opposite	9491_ID	chr1	46641158	46642160	1003	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
100091	ENST00000588605.5_3	ENST00000339413.11_4	chr19	38794803	38795646	C19orf33	+	protein_coding	chr19	38794197	38806587	YIF1B	-	protein_coding	843	opposite	6490_ID	chr19	38794804	38795646	843	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	8	8
117611	ENST00000627971.1_2	ENST00000644013.1_3	chr2	112249132	112328551	SOCAR	+	lncRNA	chr2	112186900	112456610	AC017002.3	-	lncRNA	79703	opposite	12484_ID	chr2	112249133	112328551	79419	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	8
11796	ENST00000630717.1_2	ENST00000644013.1_3	chr2	112226386	112395544	AC017002.2	+	lncRNA	chr2	112186900	112456610	AC017002.3	-	lncRNA	169158	opposite	1585_ID	chr2	112226387	112395544	169158	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	8
5	ENST00000037243.7_2	ENST00000564489.1_3	chr16	75600276	75611779	GABARAPL2	+	protein_coding	chr16	75575296	75642343	AC025287.1	-	lncRNA	11507	opposite	7096_ID	chr16	75600277	75611779	11503	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
43	ENST00000226413.5_4	ENST00000500538.7_2	chr4	68602835	68620106	GNRHR	-	protein_coding	chr4	68566996	68946670	UBA6-AS1	+	lncRNA	17271	opposite	7143_ID	chr4	68602836	68620106	17271	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
100	ENST00000247879.2_2	ENST00000465582.5_2	chr7	141463896	141464997	TAS2R3	+	protein_coding	chr7	141438199	141487722	SSBP1	+	protein_coding	1101	same	12608_ID	chr7	141463897	141464997	1101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
101	ENST00000247881.4_2	ENST00000465582.5_2	chr7	141476473	141481491	TAS2R4	+	protein_coding	chr7	141438199	141487722	SSBP1	+	protein_coding	5018	same	12616_ID	chr7	141476474	141481491	5018	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
104	ENST00000249289.5_2	ENST00000679229.1_1	chr7	128502909	128505901	ATP6V1F	+	protein_coding	chr7	128502095	128521032	KCP	-	retained_intron	2992	opposite	6382_ID	chr7	128502910	128505901	2992	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	7
114	ENST00000252939.9_6	ENST00000368554.8_4	chr10	135137575	135150400	CALY	-	protein_coding	chr10	135122913	135166033	ZNF511-PRAP1	+	protein_coding	12864	opposite	6544_ID	chr10	135137576	135150400	12825	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
163	ENST00000262209.5_4	ENST00000518916.5_1	chr8	72933484	72987819	TRPA1	-	protein_coding	chr8	72756392	73030628	MSC-AS1	+	lncRNA	55668	opposite	12791_ID	chr8	72933485	72987819	54335	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
203	ENST00000274382.9_4	ENST00000504578.2_1	chr5	96427570	96478315	LIX1	-	protein_coding	chr5	96424778	96772921	LIX1-AS1	+	lncRNA	50887	opposite	7825_ID	chr5	96427571	96478315	50745	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
205	ENST00000274629.9_4	ENST00000377360.8_3	chr5	169801674	169816371	KCNMB1	-	protein_coding	chr5	169780490	170162939	KCNIP1	+	protein_coding	14964	opposite	7425_ID	chr5	169801675	169816371	14697	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
219	ENST00000278302.9_3	ENST00000380259.7_5	chr11	5617338	5634182	TRIM6	+	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	16850	opposite	12784_ID	chr11	5617339	5634182	16844	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
235	ENST00000283109.8_4	ENST00000504578.2_1	chr5	96496570	96518951	RIOK2	-	protein_coding	chr5	96424778	96772921	LIX1-AS1	+	lncRNA	22381	opposite	9751_ID	chr5	96496571	96518951	22381	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
239	ENST00000283752.10_5	ENST00000489748.5_1	chr18	61322430	61329127	SERPINB3	-	protein_coding	chr18	61314812	61387314	SERPINB11	+	protein_coding	6697	opposite	12040_ID	chr18	61322431	61329127	6697	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
240	ENST00000283916.11_4	ENST00000500538.7_2	chr4	68686593	68749720	TMPRSS11D	-	protein_coding	chr4	68566996	68946670	UBA6-AS1	+	lncRNA	63127	opposite	12746_ID	chr4	68686594	68749720	63127	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
255	ENST00000289488.7_2	ENST00000307198.11_3	chr11	71791382	71807941	LRTOMT	+	protein_coding	chr11	71791376	71821823	AP000812.4	+	protein_coding	16559	same	7878_ID	chr11	71791383	71807941	16559	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	7
260	ENST00000290244.9_3	ENST00000429238.2_4	chr21	34961691	35014224	CRYZL1	-	protein_coding	chr21	34956992	35303911	AP000311.1	-	protein_coding	54586	same	6717_ID	chr21	34961692	35014224	52533	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
298	ENST00000296955.12_2	ENST00000467125.1_5	chr6	117803819	117891021	DCBLD1	+	protein_coding	chr6	117639373	117894734	AL132671.2	-	protein_coding	116042	opposite	6772_ID	chr6	117803820	117891021	87202	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
321	ENST00000301032.8_3	ENST00000481916.6_3	chr17	26873725	26879649	UNC119	-	protein_coding	chr17	26782769	26941201	AC005726.1	-	nonsense_mediated_decay	5924	same	12846_ID	chr17	26873726	26879649	5924	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
337	ENST00000302938.4_4	ENST00000521769.5_2	chr5	156588856	156593275	FAM71B	-	protein_coding	chr5	156569943	156649973	ITK	+	protein_coding	4419	opposite	6994_ID	chr5	156588857	156593275	4419	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
400	ENST00000311659.5_4	ENST00000380259.7_5	chr11	5528529	5531187	UBQLN3	-	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	2659	same	12842_ID	chr11	5528530	5531187	2658	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
480	ENST00000322329.5_3	ENST00000639822.1_1	chr17	45055521	45056619	RPRML	-	protein_coding	chr17	45000525	45127298	AC005670.2	+	processed_transcript	1098	opposite	11956_ID	chr17	45055522	45056619	1098	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
487	ENST00000322653.6_5	ENST00000380259.7_5	chr11	5565790	5569763	OR52H1	-	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	4045	same	9446_ID	chr11	5565791	5569763	3973	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
517	ENST00000326674.10_2	ENST00000533507.5_1	chr11	47587150	47595013	PTPMT1	+	protein_coding	chr11	47586887	47606113	NDUFS3	+	processed_transcript	8032	same	9677_ID	chr11	47587151	47595013	7863	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	7
534	ENST00000328795.5_2	ENST00000639059.1_2	chr15	22382472	22383423	OR4N4	+	protein_coding	chr15	22303183	22383808	AC134980.2	+	protein_coding	951	same	9396_ID	chr15	22382473	22383423	951	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	7	7
561	ENST00000332395.7_3	ENST00000575677.5_2	chr16	68054818	68057135	DDX28	-	protein_coding	chr16	68028688	68100276	DUS2	+	protein_coding	2317	opposite	6782_ID	chr16	68054819	68057135	2317	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
604	ENST00000337508.9_4	ENST00000644123.1_3	chr12	2934513	2944201	NRIP2	-	protein_coding	chr12	2921787	2968957	ITFG2	+	nonsense_mediated_decay	10197	opposite	9306_ID	chr12	2934514	2944201	9688	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	7
620	ENST00000339446.3_3	ENST00000526408.1_1	chr11	43946891	43964823	C11orf96	+	protein_coding	chr11	43942625	44022707	AC087521.3	+	lncRNA	18537	same	6471_ID	chr11	43946892	43964823	17932	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
635	ENST00000340779.3_3	ENST00000527278.5_1	chr7	64348904	64350478	AC073349.1	-	lncRNA	chr7	64342870	64389502	ZNF273	+	processed_transcript	1574	opposite	2523_ID	chr7	64348905	64350478	1574	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
640	ENST00000342063.5_4	ENST00000621615.1_2	chr19	2274629	2282174	PEAK3	-	protein_coding	chr19	2269523	2341170	AC005258.1	+	nonsense_mediated_decay	7545	opposite	9533_ID	chr19	2274630	2282174	7545	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
657	ENST00000344546.8_3	ENST00000581589.5_1	chr17	73034957	73043080	ATP5PD	-	protein_coding	chr17	73028706	73059358	KCTD2	+	protein_coding	8123	opposite	6377_ID	chr17	73034958	73043080	8123	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
659	ENST00000345043.2_2	ENST00000380259.7_5	chr11	5602106	5603114	OR52B6	+	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	1008	opposite	9437_ID	chr11	5602107	5603114	1008	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
755	ENST00000362125.1	ENST00000522208.6_4	chr5	179442302	179442397	MIR340	-	miRNA	chr5	179338650	179498721	RNF130	-	protein_coding	95	same	8332_ID	chr5	179442303	179442397	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
784	ENST00000362205.1	ENST00000273179.10_3	chr3	38010894	38010971	MIR26A1	+	miRNA	chr3	37903370	38025960	CTDSPL	+	protein_coding	77	same	8207_ID	chr3	38010895	38010971	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
801	ENST00000362257.1	ENST00000382080.6_4	chr8	14710946	14711019	MIR383	-	miRNA	chr8	13942353	15095940	SGCZ	-	protein_coding	73	same	8411_ID	chr8	14710947	14711019	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
819	ENST00000362327.1	ENST00000669242.1_3	chr18	1323794	1324086	RN7SKP72	-	misc_RNA	chr18	1254389	1407221	LINC00470	-	lncRNA	292	same	9916_ID	chr18	1323795	1324086	292	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
877	ENST00000362756.1	ENST00000412276.6_2	chr2	188135424	188135531	RNU6-989P	-	snRNA	chr2	187868000	188421015	AC007319.1	+	lncRNA	107	opposite	11656_ID	chr2	188135425	188135531	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
900	ENST00000362874.1	ENST00000323345.11_2	chr9	136217310	136217383	SNORD36A	+	snoRNA	chr9	136215072	136218281	RPL7A	+	protein_coding	73	same	12401_ID	chr9	136217311	136217383	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
938	ENST00000363100.1	ENST00000441592.2_1	chr15	25420073	25420155	SNORD115-3	+	snoRNA	chr15	25418125	25427198	SNHG14	+	lncRNA	82	same	12302_ID	chr15	25420074	25420155	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
963	ENST00000363261.1	ENST00000637185.1_2	chr9	109442257	109442610	RN7SKP77	+	misc_RNA	chr9	108755590	109464943	LINC01505	+	lncRNA	353	same	9921_ID	chr9	109442258	109442610	353	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
976	ENST00000363343.1	ENST00000399201.5_3	chr21	37438842	37438950	RNU6-992P	+	snRNA	chr21	37415983	37451687	SETD4	-	protein_coding	108	opposite	11657_ID	chr21	37438843	37438950	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
983	ENST00000363377.1	ENST00000541908.5_3	chr12	19598882	19598989	RNU6-254P	-	snRNA	chr12	19556999	19671126	AEBP2	+	protein_coding	107	opposite	11104_ID	chr12	19598883	19598989	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
988	ENST00000363389.1	ENST00000678510.1_1	chr19	49994431	49994517	SNORD35A	+	snoRNA	chr19	49990864	49996314	RPL13A	+	protein_coding	86	same	12399_ID	chr19	49994432	49994517	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
1035	ENST00000363633.1	ENST00000441592.2_1	chr15	25423884	25423966	SNORD115-5	+	snoRNA	chr15	25418125	25427198	SNHG14	+	lncRNA	82	same	12322_ID	chr15	25423885	25423966	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
1062	ENST00000363767.1	ENST00000659442.1_1	chr18	6017721	6017838	RNU5F-3P	-	snRNA	chr18	5895743	6108381	AP001021.3	+	lncRNA	117	opposite	10753_ID	chr18	6017722	6017838	117	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
1071	ENST00000363810.1	ENST00000441592.2_1	chr15	25421978	25422060	SNORD115-4	+	snoRNA	chr15	25418125	25427198	SNHG14	+	lncRNA	82	same	12313_ID	chr15	25421979	25422060	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
1081	ENST00000363865.1	ENST00000323571.9_2	chr17	38399474	38399571	RNY4P8	+	misc_RNA	chr17	38375555	38440388	WIPF2	+	protein_coding	97	same	11865_ID	chr17	38399475	38399571	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
1086	ENST00000363889.1	ENST00000271620.8_2	chr1	150995221	150995328	RNU6-884P	-	snRNA	chr1	150980924	151008189	PRUNE1	+	protein_coding	107	opposite	11583_ID	chr1	150995222	150995328	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
1097	ENST00000363942.1	ENST00000441592.2_1	chr15	25425643	25425725	SNORD115-6	+	snoRNA	chr15	25418125	25427198	SNHG14	+	lncRNA	82	same	12323_ID	chr15	25425644	25425725	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
1105	ENST00000363961.1	ENST00000323345.11_2	chr9	136216949	136217023	SNORD36B	+	snoRNA	chr9	136215072	136218281	RPL7A	+	protein_coding	74	same	12402_ID	chr9	136216950	136217023	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
1111	ENST00000364009.1	ENST00000453788.6_3	chr11	122928784	122928869	SNORD14E	-	snoRNA	chr11	122928196	122933043	HSPA8	-	protein_coding	85	same	12376_ID	chr11	122928785	122928869	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
1136	ENST00000364131.1	ENST00000646289.1_1	chr10	29049627	29049732	RNU6-270P	-	snRNA	chr10	29032434	29230839	LINC01517	+	lncRNA	105	opposite	11119_ID	chr10	29049628	29049732	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
1139	ENST00000364158.1	ENST00000356415.5_1	chr1	112193052	112193159	RNU6-151P	-	snRNA	chr1	112084839	112255735	RAP1A	+	protein_coding	107	opposite	11036_ID	chr1	112193053	112193159	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
1203	ENST00000364522.1	ENST00000633930.1_4	chrX	71185821	71185924	RNU6-1078P	-	snRNA	chrX	71130667	71373136	NHSL2	+	protein_coding	103	opposite	10813_ID	chrX	71185822	71185924	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
1239	ENST00000364713.1	ENST00000666856.1_3	chr9	107859036	107859342	RN7SKP191	+	misc_RNA	chr9	107788212	108001502	AL591506.1	-	lncRNA	306	opposite	9812_ID	chr9	107859037	107859342	306	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
1260	ENST00000364805.1	ENST00000678510.1_1	chr19	49993221	49993305	SNORD32A	+	snoRNA	chr19	49990864	49996314	RPL13A	+	protein_coding	84	same	12396_ID	chr19	49993222	49993305	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
1291	ENST00000364951.1	ENST00000382592.5_4	chr13	21612667	21612806	RNU4-9P	-	snRNA	chr13	21547174	21635725	LATS2	-	protein_coding	139	same	10718_ID	chr13	21612668	21612806	139	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
1334	ENST00000365233.1	ENST00000666191.1_1	chr6	86702738	86702877	RNU4-12P	-	snRNA	chr6	86659407	86707981	AL450338.2	+	lncRNA	139	opposite	10659_ID	chr6	86702739	86702877	139	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
1357	ENST00000365382.1	ENST00000453788.6_3	chr11	122930042	122930130	SNORD14C	-	snoRNA	chr11	122928196	122933043	HSPA8	-	protein_coding	88	same	12374_ID	chr11	122930043	122930130	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
1358	ENST00000365389.1	ENST00000533028.8_4	chr1	100466192	100466295	RNU6-1318P	-	snRNA	chr1	100435551	100501190	SLC35A3	+	protein_coding	103	opposite	11003_ID	chr1	100466193	100466295	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
1363	ENST00000365415.1	ENST00000669890.1_3	chr6	107186822	107186929	RNU6-117P	-	snRNA	chr6	107153208	107235396	LINC02532	-	lncRNA	107	same	10883_ID	chr6	107186823	107186929	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
1367	ENST00000365466.1	ENST00000575677.5_2	chr16	68051612	68051720	RNU6-359P	-	snRNA	chr16	68028688	68100276	DUS2	+	protein_coding	108	opposite	11180_ID	chr16	68051613	68051720	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
1393	ENST00000365633.1	ENST00000678510.1_1	chr19	49994160	49994231	SNORD34	+	snoRNA	chr19	49990864	49996314	RPL13A	+	protein_coding	71	same	12398_ID	chr19	49994161	49994231	71	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
1415	ENST00000366487.4_6	ENST00000536561.5_2	chr1	247687978	247699742	OR2C3	-	protein_coding	chr1	247670359	247740992	GCSAML	+	protein_coding	11764	opposite	9382_ID	chr1	247687979	247699742	11764	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	7
1429	ENST00000367651.4_6	ENST00000650173.1_1	chr6	139692943	139695785	CITED2	-	protein_coding	chr6	139592498	139828735	AL592429.2	+	lncRNA	2842	opposite	6656_ID	chr6	139692944	139695785	2842	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
1439	ENST00000368255.7_1	ENST00000413555.5_3	chr1	156307104	156316786	TSACC	+	protein_coding	chr1	156288660	156337650	CCT3	-	protein_coding	9682	opposite	12796_ID	chr1	156307105	156316786	9682	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
1440	ENST00000368272.5_2	ENST00000490491.5_3	chr1	156211974	156213108	BGLAP	+	protein_coding	chr1	156182772	156213123	PMF1-BGLAP	+	protein_coding	1134	same	6412_ID	chr1	156211975	156213108	1134	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	7
1441	ENST00000368279.7_2	ENST00000490491.5_3	chr1	156182783	156209831	PMF1	+	protein_coding	chr1	156182772	156213123	PMF1-BGLAP	+	protein_coding	27050	same	9590_ID	chr1	156182784	156209831	27048	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	7
1444	ENST00000368698.3_1	ENST00000497086.5_4	chr1	153600401	153604510	S100A1	+	protein_coding	chr1	153598807	153606816	AL162258.1	-	lncRNA	4114	opposite	11983_ID	chr1	153600402	153604510	4109	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
1446	ENST00000368799.2_3	ENST00000653548.1_1	chr1	152274640	152297715	FLG	-	protein_coding	chr1	152161819	152377526	FLG-AS1	+	lncRNA	23075	opposite	7034_ID	chr1	152274641	152297715	23075	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
1447	ENST00000368801.4_5	ENST00000653548.1_1	chr1	152184551	152196669	HRNR	-	protein_coding	chr1	152161819	152377526	FLG-AS1	+	lncRNA	12118	opposite	7288_ID	chr1	152184552	152196669	12118	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
1532	ENST00000375544.7_4	ENST00000375587.8_3	chr9	95218486	95244788	ASPN	-	protein_coding	chr9	95088234	95382811	CENPP	+	protein_coding	26302	opposite	6358_ID	chr9	95218487	95244788	26302	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
1533	ENST00000375550.4_3	ENST00000375587.8_3	chr9	95176526	95186743	OMD	-	protein_coding	chr9	95088234	95382811	CENPP	+	protein_coding	10217	opposite	9334_ID	chr9	95176527	95186743	10217	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
1534	ENST00000375561.10_4	ENST00000375587.8_3	chr9	95145549	95166860	OGN	-	protein_coding	chr9	95088234	95382811	CENPP	+	protein_coding	21429	opposite	9330_ID	chr9	95145550	95166860	21311	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
1538	ENST00000375819.3_4	ENST00000460663.5_1	chr6	31686424	31689523	LY6G6C	-	protein_coding	chr6	31686370	31692812	MPIG6B	+	retained_intron	3099	opposite	7885_ID	chr6	31686425	31689523	3099	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	7
1578	ENST00000379108.1_2	ENST00000340473.8_2	chr13	45766987	45768852	KCTD4	-	protein_coding	chr13	45694644	45859028	GTF2F2	+	protein_coding	1865	opposite	7431_ID	chr13	45766988	45768852	1865	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
1621	ENST00000381318.8_4	ENST00000429238.2_4	chr21	35014806	35272165	ITSN1	+	protein_coding	chr21	34956992	35303911	AP000311.1	-	protein_coding	257460	opposite	7385_ID	chr21	35014807	35272165	257359	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
1657	ENST00000383884.1	ENST00000323345.11_2	chr9	136216250	136216325	SNORD24	+	snoRNA	chr9	136215072	136218281	RPL7A	+	protein_coding	75	same	12392_ID	chr9	136216251	136216325	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
1675	ENST00000383923.1	ENST00000250559.14_2	chr12	69021013	69021155	SNORA70G	-	snoRNA	chr12	69004678	69065681	RAP1B	+	protein_coding	142	opposite	12200_ID	chr12	69021014	69021155	142	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
1681	ENST00000383953.1	ENST00000370321.8_3	chr1	93302845	93302940	SNORD21	+	snoRNA	chr1	93297596	93307481	RPL5	+	protein_coding	95	same	12389_ID	chr1	93302846	93302940	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
1692	ENST00000383968.1	ENST00000651999.1_1	chr8	126913194	126913298	RNU6-442P	+	snRNA	chr8	126660570	126967836	AC016074.2	+	lncRNA	104	same	11246_ID	chr8	126913195	126913298	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
1721	ENST00000384036.1	ENST00000424848.3_4	chr7	92331021	92331128	RNU6-10P	-	snRNA	chr7	92234234	92465887	CDK6	-	protein_coding	107	same	10829_ID	chr7	92331022	92331128	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
1834	ENST00000384390.1	ENST00000453788.6_3	chr11	122929616	122929703	SNORD14D	-	snoRNA	chr11	122928196	122933043	HSPA8	-	protein_coding	87	same	12375_ID	chr11	122929617	122929703	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
1942	ENST00000384663.1	ENST00000273064.11_2	chr2	219453936	219454043	RNU6-136P	-	snRNA	chr2	219433561	219461803	CNOT9	+	protein_coding	107	opposite	11025_ID	chr2	219453937	219454043	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
1949	ENST00000384697.1	ENST00000500538.7_2	chr4	68869612	68869719	RNU6-95P	+	snRNA	chr4	68566996	68946670	UBA6-AS1	+	lncRNA	107	same	11637_ID	chr4	68869613	68869719	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
1979	ENST00000384777.1	ENST00000372771.5_2	chr1	40643514	40643621	RNU6-1237P	+	snRNA	chr1	40627058	40706593	RLF	+	protein_coding	107	same	10933_ID	chr1	40643515	40643621	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
1983	ENST00000384792.1	ENST00000370321.8_3	chr1	93306275	93306408	SNORA66	+	snoRNA	chr1	93297596	93307481	RPL5	+	protein_coding	2834	same	12195_ID	chr1	93306276	93306408	133	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
2014	ENST00000384845.1	ENST00000669890.1_3	chr6	107231999	107232095	MIR587	+	miRNA	chr6	107153208	107235396	LINC02532	-	lncRNA	96	opposite	8991_ID	chr6	107232000	107232095	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
2070	ENST00000384917.1	ENST00000451982.6_4	chr3	195426271	195426368	MIR570	+	miRNA	chr3	195408149	195435678	MUC20-OT1	+	lncRNA	97	same	8972_ID	chr3	195426272	195426368	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
2072	ENST00000384919.1	ENST00000338625.9_2	chr13	41384901	41384997	MIR621	+	miRNA	chr13	41363746	41386596	SLC25A15	+	protein_coding	96	same	9025_ID	chr13	41384902	41384997	96	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
2141	ENST00000385054.1	ENST00000398073.7_4	chr12	58218391	58218475	MIR26A2	-	miRNA	chr12	58213709	58240512	CTDSP2	-	protein_coding	84	same	8208_ID	chr12	58218392	58218475	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
2263	ENST00000386148.1	ENST00000372057.1_3	chrX	109468212	109468291	SNORD96B	-	snoRNA	chrX	109439637	109683461	AMMECR1	-	protein_coding	79	same	12467_ID	chrX	109468213	109468291	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
2274	ENST00000388718.5_4	ENST00000653548.1_1	chr1	152321210	152332482	FLG2	-	protein_coding	chr1	152161819	152377526	FLG-AS1	+	lncRNA	11272	opposite	7035_ID	chr1	152321211	152332482	11272	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
2277	ENST00000388923.5_3	ENST00000448282.6_3	chr6	88054530	88075181	C6orf163	+	protein_coding	chr6	88032322	88109459	SMIM8	+	nonsense_mediated_decay	20651	same	6516_ID	chr6	88054531	88075181	20651	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
2288	ENST00000390161.1	ENST00000370818.8_3	chrX	132880774	132880873	AL009174.1	-	miRNA	chrX	132669772	133119621	GPC3	-	protein_coding	99	same	4438_ID	chrX	132880775	132880873	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
2327	ENST00000390702.2	ENST00000374553.6_2	chrX	69242706	69242773	MIR676	+	miRNA	chrX	68835910	69259319	EDA	+	protein_coding	67	same	9072_ID	chrX	69242707	69242773	67	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
2342	ENST00000390768.1	ENST00000377028.10_5	chr13	95117553	95117644	AL139318.1	-	miRNA	chr13	95089064	95131936	DCT	-	protein_coding	91	same	5035_ID	chr13	95117554	95117644	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
2379	ENST00000390944.1	ENST00000427836.8_5	chr2	208884361	208884465	RNU6-360P	-	snRNA	chr2	208686011	208890251	PLEKHM3	-	protein_coding	104	same	11182_ID	chr2	208884362	208884465	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
2381	ENST00000390946.1	ENST00000533028.8_4	chr1	100444494	100444601	RNU6-750P	+	snRNA	chr1	100435551	100501190	SLC35A3	+	protein_coding	107	same	11474_ID	chr1	100444495	100444601	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
2387	ENST00000390981.1	ENST00000424632.5_3	chr2	101889397	101889511	SNORD89	-	snoRNA	chr2	101887683	101925163	RNF149	-	nonsense_mediated_decay	114	same	12458_ID	chr2	101889398	101889511	114	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
2427	ENST00000391141.1	ENST00000401722.7_3	chr12	98993412	98993661	SNORA53	+	snoRNA	chr12	98987368	99000157	SLC25A3	+	protein_coding	249	same	12181_ID	chr12	98993413	98993661	249	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
2471	ENST00000392370.8_4	ENST00000412276.6_2	chr2	188206690	188312979	CALCRL	-	protein_coding	chr2	187868000	188421015	AC007319.1	+	lncRNA	106497	opposite	6539_ID	chr2	188206691	188312979	106289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
2496	ENST00000395321.6_3	ENST00000481916.6_3	chr17	26900132	26903966	ALDOC	-	protein_coding	chr17	26782769	26941201	AC005726.1	-	nonsense_mediated_decay	3834	same	5927_ID	chr17	26900133	26903966	3834	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
2497	ENST00000395346.6_3	ENST00000481916.6_3	chr17	26880404	26898554	PIGS	-	protein_coding	chr17	26782769	26941201	AC005726.1	-	nonsense_mediated_decay	18412	same	9555_ID	chr17	26880405	26898554	18150	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
2503	ENST00000396439.7_4	ENST00000539033.1_3	chr12	10564913	10573194	KLRC3	-	protein_coding	chr12	10564910	10588600	AC068775.1	-	protein_coding	8281	same	7460_ID	chr12	10564914	10573194	8281	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	7
2510	ENST00000396880.3_1	ENST00000282185.8_3	chr5	81287813	81288300	ATG10-IT1	+	lncRNA	chr5	81267841	81551952	ATG10	+	protein_coding	487	same	6363_ID	chr5	81287814	81288300	487	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
2565	ENST00000401153.1	ENST00000368759.5_3	chr10	127531512	127531598	AL360176.1	+	miRNA	chr10	127512114	127542264	BCCIP	+	protein_coding	86	same	5522_ID	chr10	127531513	127531598	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
2613	ENST00000401364.2	ENST00000370401.6_2	chrX	149657797	149657884	AC109994.1	-	miRNA	chrX	149531550	149682448	MAMLD1	+	protein_coding	87	opposite	3781_ID	chrX	149657798	149657884	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
2625	ENST00000403371.2_3	ENST00000356413.5_2	chrX	69368431	69369504	IGBP1-AS2	-	lncRNA	chrX	69353296	69386174	IGBP1	+	protein_coding	1073	opposite	7335_ID	chrX	69368432	69369504	1073	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	7
2637	ENST00000407006.8_1	ENST00000579192.5_3	chr17	8191971	8193408	RANGRF	+	protein_coding	chr17	8191080	8198661	SLC25A35	-	protein_coding	1439	opposite	9700_ID	chr17	8191972	8193408	1437	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	7
2644	ENST00000408068.2	ENST00000436367.6_3	chr6	16428674	16428754	AL034375.1	-	miRNA	chr6	16299342	16761691	ATXN1	-	protein_coding	80	same	4584_ID	chr6	16428675	16428754	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
2655	ENST00000408106.1	ENST00000300069.5_4	chr15	65054585	65054714	MIR1272	-	miRNA	chr15	65032089	65067788	RBPMS2	-	protein_coding	129	same	8029_ID	chr15	65054586	65054714	129	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
2675	ENST00000408158.1	ENST00000490935.5_3	chr2	63922526	63922669	AC096664.3	-	miRNA	chr2	63711737	64054977	WDPCP	-	processed_transcript	143	same	3286_ID	chr2	63922527	63922669	143	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
2682	ENST00000408178.1	ENST00000393229.4_2	chr9	135090137	135090262	AL159997.1	-	miRNA	chr9	135037444	135119913	NTNG2	+	protein_coding	125	opposite	5127_ID	chr9	135090138	135090262	125	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
2691	ENST00000408207.1	ENST00000563137.7_5	chr16	49713130	49713212	AC007339.1	+	miRNA	chr16	49521434	49890023	ZNF423	-	protein_coding	82	opposite	547_ID	chr16	49713131	49713212	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
2721	ENST00000408295.1	ENST00000370548.3_1	chr1	87616980	87617128	AL139139.1	+	miRNA	chr1	87458691	87634887	AC093155.3	+	protein_coding	148	same	5012_ID	chr1	87616981	87617128	148	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
2795	ENST00000408476.1	ENST00000367362.8_4	chr1	200113961	200114063	AC096633.1	+	miRNA	chr1	199996837	200146543	NR5A2	+	protein_coding	102	same	3283_ID	chr1	200113962	200114063	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
2820	ENST00000408538.1	ENST00000421806.4_7	chr10	98680458	98680548	AL162502.1	+	miRNA	chr10	98592054	98755713	LCOR	+	protein_coding	90	same	5206_ID	chr10	98680459	98680548	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
2858	ENST00000408613.1	ENST00000674596.1_1	chr17	19247818	19247887	MIR1180	-	miRNA	chr17	19239864	19281220	B9D1	-	protein_coding	69	same	7966_ID	chr17	19247819	19247887	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
2878	ENST00000408659.1	ENST00000649150.1_1	chr11	90602288	90602370	MIR1261	-	miRNA	chr11	89984371	90648216	DISC1FP1	+	lncRNA	82	opposite	8018_ID	chr11	90602289	90602370	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
2911	ENST00000408732.1	ENST00000634837.1_1	chr3	21179754	21179833	AC104441.1	-	miRNA	chr3	20773875	21187459	SGO1-AS1	+	lncRNA	79	opposite	3533_ID	chr3	21179755	21179833	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
2916	ENST00000408740.1	ENST00000375749.8_2	chr20	30825597	30825650	MIR1825	+	miRNA	chr20	30795682	30826461	POFUT1	+	protein_coding	53	same	8127_ID	chr20	30825598	30825650	53	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
2952	ENST00000408833.1	ENST00000403880.5_5	chr22	26951177	26951289	MIR548J	-	miRNA	chr22	26921711	26992681	TPST2	-	protein_coding	112	same	8906_ID	chr22	26951178	26951289	112	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
2965	ENST00000408862.1	ENST00000575677.5_2	chr16	68089681	68089787	AC130462.1	-	miRNA	chr16	68028688	68100276	DUS2	+	protein_coding	106	opposite	4070_ID	chr16	68089682	68089787	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
2979	ENST00000408930.6_1	ENST00000298251.5_4	chr11	124789139	124790573	HEPN1	+	protein_coding	chr11	124789100	124805943	HEPACAM	-	protein_coding	1434	opposite	7227_ID	chr11	124789140	124790573	1434	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
3008	ENST00000410135.1	ENST00000627851.2_1	chr11	126084154	126084373	RNU4-86P	-	snRNA	chr11	126081618	126132879	FAM118B	+	protein_coding	219	opposite	10711_ID	chr11	126084155	126084373	219	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
3087	ENST00000410453.1	ENST00000532947.2_1	chr11	28282740	28283066	RN7SKP158	-	misc_RNA	chr11	28131712	28548588	METTL15	+	nonsense_mediated_decay	326	opposite	9793_ID	chr11	28282741	28283066	326	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
3118	ENST00000410583.1	ENST00000671160.1_1	chr6	22085772	22086147	RN7SKP240	+	misc_RNA	chr6	21664415	22194641	CASC15	+	lncRNA	375	same	9849_ID	chr6	22085773	22086147	375	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
3137	ENST00000410691.1	ENST00000466557.6_3	chr1	157783	157887	RNU6-1100P	-	snRNA	chr1	146385	173862	AL627309.5	-	lncRNA	104	same	10830_ID	chr1	157784	157887	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
3164	ENST00000410817.1	ENST00000361539.5_2	chr1	177155495	177155588	AL021398.1	-	miRNA	chr1	177140093	177251558	BRINP2	+	protein_coding	93	opposite	4448_ID	chr1	177155496	177155588	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
3168	ENST00000410828.1	ENST00000464497.5_1	chr9	36267779	36267919	RNU4-53P	+	snRNA	chr9	36190927	36304778	CLTA	+	nonsense_mediated_decay	140	same	10693_ID	chr9	36267780	36267919	140	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
3179	ENST00000410913.1	ENST00000412276.6_2	chr2	187987288	187987588	RN7SKP42	-	misc_RNA	chr2	187868000	188421015	AC007319.1	+	lncRNA	300	opposite	9896_ID	chr2	187987289	187987588	300	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
3203	ENST00000411042.1	ENST00000639998.1_1	chr7	12916308	12916571	RN7SKP228	+	misc_RNA	chr7	12765776	13744165	AC011287.1	+	lncRNA	263	same	9834_ID	chr7	12916309	12916571	263	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
3228	ENST00000411169.1	ENST00000649150.1_1	chr11	90057943	90058052	AP002364.1	+	miRNA	chr11	89984371	90648216	DISC1FP1	+	lncRNA	109	same	6184_ID	chr11	90057944	90058052	109	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
3248	ENST00000411331.1	ENST00000370994.8_5	chr1	67882896	67883001	RNU6-387P	+	snRNA	chr1	67873492	67896098	SERBP1	-	protein_coding	105	opposite	11200_ID	chr1	67882897	67883001	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
3321	ENST00000412369.1_1	ENST00000494118.5_4	chr3	21584307	21621451	ZNF385D-AS1	+	lncRNA	chr3	21478503	22414123	ZNF385D	-	nonsense_mediated_decay	37171	opposite	13043_ID	chr3	21584308	21621451	37144	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	7
3325	ENST00000412483.1_3	ENST00000366618.8_3	chr1	234348351	234350834	AL122008.3	-	lncRNA	chr1	234040421	234460257	SLC35F3	+	protein_coding	2483	opposite	4794_ID	chr1	234348352	234350834	2483	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
3336	ENST00000412730.1_1	ENST00000648482.1_3	chr7	47801073	47806370	LINC00525	+	lncRNA	chr7	47779799	47851628	PKD1L1	-	protein_coding	5297	opposite	7560_ID	chr7	47801074	47806370	5297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
3342	ENST00000412918.1_3	ENST00000429204.5_3	chr1	226844380	226862768	ITPKB-IT1	-	lncRNA	chr1	226819390	226926876	ITPKB	-	protein_coding	18428	same	7383_ID	chr1	226844381	226862768	18388	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
3353	ENST00000413274.1_1	ENST00000272602.7_3	chr2	98963457	98967603	AC092675.2	+	lncRNA	chr2	98962918	99015064	CNGA3	+	protein_coding	4146	same	3119_ID	chr2	98963458	98967603	4146	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
3410	ENST00000414686.1_1	ENST00000370109.8_5	chr1	101461028	101461816	AC093157.2	+	lncRNA	chr1	101455178	101491340	DPH5	-	protein_coding	788	opposite	3183_ID	chr1	101461029	101461816	788	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
3424	ENST00000414992.5_1	ENST00000478244.6_4	chr13	114123215	114130450	DCUN1D2-AS	+	lncRNA	chr13	114110133	114145026	DCUN1D2	-	protein_coding	7235	opposite	6776_ID	chr13	114123216	114130450	7235	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
3492	ENST00000416664.1_1	ENST00000377067.9_2	chr13	93136858	93162347	GPC5-IT1	+	lncRNA	chr13	92050874	93519490	GPC5	+	protein_coding	25489	same	7151_ID	chr13	93136859	93162347	25489	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
3501	ENST00000417112.2_2	ENST00000650342.1_1	chr10	6751491	6780928	LINP1	+	lncRNA	chr10	6724474	6865751	AL158210.1	+	lncRNA	31003	same	7820_ID	chr10	6751492	6780928	29437	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
3506	ENST00000417209.2_2	ENST00000643151.1_3	chr1	192286121	192336415	RGS21	+	protein_coding	chr1	192136915	192362044	AL390957.1	-	lncRNA	50294	opposite	9743_ID	chr1	192286122	192336415	50294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
3523	ENST00000417563.3_4	ENST00000648193.1_4	chr1	173604476	173606269	TEX50	+	protein_coding	chr1	173565198	173638976	AL139142.2	-	nonsense_mediated_decay	1793	opposite	12661_ID	chr1	173604477	173606269	1793	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
3530	ENST00000417969.1_3	ENST00000392122.3_3	chr1	167426619	167427898	AL359962.1	-	lncRNA	chr1	167399876	167487847	CD247	-	protein_coding	1279	same	5509_ID	chr1	167426620	167427898	1279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
3568	ENST00000418848.1_3	ENST00000372057.1_3	chrX	109548647	109550449	AMMECR1-IT1	-	lncRNA	chrX	109439637	109683461	AMMECR1	-	protein_coding	1802	same	5939_ID	chrX	109548648	109550449	1802	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
3578	ENST00000419196.1_1	ENST00000366952.1_3	chr6	160693648	160697162	AL162582.1	+	lncRNA	chr6	160665216	160698670	SLC22A2	-	protein_coding	3514	opposite	5207_ID	chr6	160693649	160697162	3514	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
3582	ENST00000419288.1_3	ENST00000377067.9_2	chr13	93353641	93373867	GPC5-AS1	-	lncRNA	chr13	92050874	93519490	GPC5	+	protein_coding	20226	opposite	7149_ID	chr13	93353642	93373867	20226	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
3584	ENST00000419440.1_3	ENST00000374791.7_1	chr11	131747573	131767002	AP000844.2	-	lncRNA	chr11	131240372	132206716	NTM	+	protein_coding	19429	opposite	6037_ID	chr11	131747574	131767002	19429	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
3619	ENST00000420224.1_3	ENST00000651909.1_1	chr7	124869632	124904345	AC019155.2	-	lncRNA	chr7	124569996	125123020	POT1-AS1	+	lncRNA	34713	opposite	1692_ID	chr7	124869633	124904345	34713	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
3628	ENST00000420469.2_5	ENST00000536561.5_2	chr1	247687980	247694106	GCSAML-AS1	-	processed_transcript	chr1	247670359	247740992	GCSAML	+	protein_coding	7935	opposite	7111_ID	chr1	247687981	247694106	6126	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
3637	ENST00000420777.1_1	ENST00000319516.8_4	chr6	10409572	10416679	TFAP2A-AS1	+	lncRNA	chr6	10398104	10419871	TFAP2A	-	protein_coding	7107	opposite	12664_ID	chr6	10409573	10416679	7107	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
3645	ENST00000420918.3_3	ENST00000462959.2_1	chr2	61368726	61372085	AC016747.1	-	lncRNA	chr2	61342921	61391960	AC016747.4	+	lncRNA	3378	opposite	1560_ID	chr2	61368727	61372085	3359	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
3663	ENST00000421480.2_3	ENST00000602389.1_3	chr10	16763350	16790376	AC073367.1	-	lncRNA	chr10	16632618	16859453	RSU1	-	protein_coding	27026	same	2525_ID	chr10	16763351	16790376	27026	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
3671	ENST00000421650.2_2	ENST00000374791.7_1	chr11	131416555	131443494	AP003025.2	-	lncRNA	chr11	131240372	132206716	NTM	+	protein_coding	39116	opposite	6227_ID	chr11	131416556	131443494	26939	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
3672	ENST00000421651.1_1	ENST00000374791.7_1	chr11	132154195	132154975	NTM-IT	+	lncRNA	chr11	131240372	132206716	NTM	+	protein_coding	780	same	9313_ID	chr11	132154196	132154975	780	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
3688	ENST00000421964.1_3	ENST00000427836.8_5	chr2	208733305	208734639	AC083900.1	-	lncRNA	chr2	208686011	208890251	PLEKHM3	-	protein_coding	1334	same	2723_ID	chr2	208733306	208734639	1334	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
3694	ENST00000422148.2_1	ENST00000337963.9_5	chr13	20415966	20417812	AL355001.1	+	lncRNA	chr13	20397621	20437789	ZMYM5	-	protein_coding	1846	opposite	5310_ID	chr13	20415967	20417812	1846	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
3709	ENST00000422483.1_1	ENST00000258648.7_4	chr13	48651272	48654127	MED4-AS1	+	lncRNA	chr13	48649859	48669240	MED4	-	protein_coding	2855	opposite	7938_ID	chr13	48651273	48654127	2855	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	7
3710	ENST00000422510.1_1	ENST00000382592.5_4	chr13	21579295	21592261	LATS2-AS1	+	lncRNA	chr13	21547174	21635725	LATS2	-	protein_coding	12966	opposite	7513_ID	chr13	21579296	21592261	12966	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
3787	ENST00000424496.2_2	ENST00000344138.9_2	chr22	40356400	40360722	Z82206.1	+	protein_coding	chr22	40297087	40369725	GRAP2	+	protein_coding	4322	same	12941_ID	chr22	40356401	40360722	4322	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
3792	ENST00000424635.1_3	ENST00000375559.8_2	chr13	113782468	113783194	F10-AS1	-	lncRNA	chr13	113777112	113803843	F10	+	protein_coding	726	opposite	6950_ID	chr13	113782469	113783194	726	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
3838	ENST00000425802.1_1	ENST00000371626.9_3	chr1	52499062	52509951	AL445685.1	+	lncRNA	chr1	52485802	52520863	TXNDC12	-	protein_coding	10889	opposite	5634_ID	chr1	52499063	52509951	10889	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
3872	ENST00000427471.1_1	ENST00000302127.5_5	chr1	112452269	112453553	KCND3-AS1	+	lncRNA	chr1	112313283	112532290	KCND3	-	protein_coding	1596	opposite	7407_ID	chr1	112452270	112453553	1284	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
3878	ENST00000427775.2_3	ENST00000652081.1_1	chr6	22589365	22594062	AL033539.1	-	lncRNA	chr6	22349668	22654684	CASC15	+	lncRNA	4697	opposite	4579_ID	chr6	22589366	22594062	4697	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
3881	ENST00000427911.1_3	ENST00000650763.1_1	chr21	34216676	34222244	AP000281.2	-	lncRNA	chr21	34144514	34309557	C21orf62-AS1	+	lncRNA	5568	opposite	5969_ID	chr21	34216677	34222244	5568	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
3902	ENST00000428541.1_1	ENST00000464747.5_5	chr2	178129086	178130243	AC079305.1	+	lncRNA	chr2	178095035	178257425	NFE2L2	-	protein_coding	1157	opposite	2640_ID	chr2	178129087	178130243	1157	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
3935	ENST00000429352.1_1	ENST00000653548.1_1	chr1	152178333	152179533	AL589986.2	+	lncRNA	chr1	152161819	152377526	FLG-AS1	+	lncRNA	1200	same	5745_ID	chr1	152178334	152179533	1200	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
3963	ENST00000430125.1_3	ENST00000376355.7_3	chr13	100342334	100343225	CLYBL-AS2	-	lncRNA	chr13	100258922	100549388	CLYBL	+	protein_coding	891	opposite	6672_ID	chr13	100342335	100343225	891	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
3970	ENST00000430327.6_4	ENST00000347667.5_1	chr21	42548248	42558700	PLAC4	-	lncRNA	chr21	42539727	42654445	BACE2	+	protein_coding	11558	opposite	9571_ID	chr21	42548249	42558700	10452	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
3977	ENST00000430456.1_2	ENST00000640101.1_3	chrX	56999942	57001229	AL139397.1	+	lncRNA	chrX	56844730	57021984	SPIN3	-	nonsense_mediated_decay	1287	opposite	5046_ID	chrX	56999943	57001229	1287	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
4032	ENST00000432045.6_3	ENST00000642963.1_2	chr7	130561567	130598069	AC016831.1	-	lncRNA	chr7	130476022	130792687	AC016831.6	-	lncRNA	36502	same	1565_ID	chr7	130561568	130598069	36502	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	7
4038	ENST00000432163.1_3	ENST00000647336.1_1	chr3	27872378	27875627	LINC01981	-	lncRNA	chr3	27839053	27973070	LINC01980	+	lncRNA	3251	opposite	7710_ID	chr3	27872379	27875627	3249	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
4054	ENST00000432626.1_1	ENST00000379145.5_4	chrX	24668189	24676354	PCYT1B-AS1	+	lncRNA	chrX	24576203	24690794	PCYT1B	-	protein_coding	8165	opposite	9518_ID	chrX	24668190	24676354	8165	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
4082	ENST00000433378.1_1	ENST00000347667.5_1	chr21	42552023	42552553	BACE2-IT1	+	lncRNA	chr21	42539727	42654445	BACE2	+	protein_coding	530	same	6396_ID	chr21	42552024	42552553	530	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
4086	ENST00000433442.1_3	ENST00000367463.5_2	chr6	149348835	149353709	UST-AS2	-	lncRNA	chr6	149068165	149398126	UST	+	protein_coding	4874	opposite	12884_ID	chr6	149348836	149353709	4874	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
4087	ENST00000433455.1_2	ENST00000378116.9_4	chr10	15279490	15283766	AL607028.1	+	lncRNA	chr10	15253641	15413288	FAM171A1	-	protein_coding	4276	opposite	5846_ID	chr10	15279491	15283766	4276	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
4148	ENST00000435273.2	ENST00000650599.1_1	chr6	149896600	149897260	RP1-12G14.6	-	antisense	chr6	149887429	149912884	GINM1	+	nonsense_mediated_decay	660	opposite	11874_ID	chr6	149896601	149897260	660	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
4174	ENST00000435967.1_1	ENST00000424460.1_1	chr7	8343370	8380973	AC007128.2	+	lncRNA	chr7	8301893	8384146	AC007128.1	+	lncRNA	37603	same	509_ID	chr7	8343371	8380973	37603	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
4185	ENST00000436303.1_1	ENST00000399201.5_3	chr21	37432729	37436706	SETD4-AS1	+	lncRNA	chr21	37415983	37451687	SETD4	-	protein_coding	3977	opposite	12043_ID	chr21	37432730	37436706	3977	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
4203	ENST00000436722.2_4	ENST00000457843.1_1	chr13	101586276	101596768	LINC00411	-	lncRNA	chr13	101360578	101711638	NALCN-AS1	+	lncRNA	10531	opposite	7548_ID	chr13	101586277	101596768	10492	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
4263	ENST00000438589.1_3	ENST00000606738.3_4	chr1	48226803	48231219	AL691459.1	-	lncRNA	chr1	48226199	48463057	TRABD2B	-	protein_coding	4416	same	5886_ID	chr1	48226804	48231219	4416	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
4310	ENST00000439736.1_3	ENST00000302127.5_5	chr1	112396383	112399527	KCND3-IT1	-	lncRNA	chr1	112313283	112532290	KCND3	-	protein_coding	3144	same	7408_ID	chr1	112396384	112399527	3144	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
4352	ENST00000440788.1_3	ENST00000242108.9_2	chr7	36268888	36270716	AC007327.2	-	lncRNA	chr7	36192862	36341147	EEPD1	+	protein_coding	1828	opposite	544_ID	chr7	36268889	36270716	1828	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
4423	ENST00000442821.1_2	ENST00000658738.1_3	chr2	45395721	45396553	AC093833.1	+	lncRNA	chr2	45391956	45550528	LINC01121	-	lncRNA	832	opposite	3250_ID	chr2	45395722	45396553	832	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	7
4438	ENST00000443246.2_3	ENST00000646289.1_1	chr10	29078116	29084935	LINC00837	-	lncRNA	chr10	29032434	29230839	LINC01517	+	lncRNA	6926	opposite	7576_ID	chr10	29078117	29084935	6819	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
4440	ENST00000443319.2_4	ENST00000374791.7_1	chr11	131372628	131410714	AP003025.1	-	lncRNA	chr11	131240372	132206716	NTM	+	protein_coding	38133	opposite	6226_ID	chr11	131372629	131410714	38086	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
4445	ENST00000443652.1_3	ENST00000393077.3_2	chr10	114431570	114437578	AL139120.1	-	lncRNA	chr10	114206972	114578503	VTI1A	+	protein_coding	6008	opposite	5009_ID	chr10	114431571	114437578	6008	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
4470	ENST00000444490.6_3	ENST00000375587.8_3	chr9	95255835	95298374	ECM2	-	protein_coding	chr9	95088234	95382811	CENPP	+	protein_coding	43102	opposite	6869_ID	chr9	95255836	95298374	42539	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
4472	ENST00000444701.1_3	ENST00000374016.5_4	chr9	118014816	118016530	AL355601.1	-	lncRNA	chr9	117904096	118164923	DELEC1	+	lncRNA	1714	opposite	5349_ID	chr9	118014817	118016530	1714	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
4478	ENST00000444914.7_4	ENST00000481916.6_3	chr17	26800310	26824796	SLC13A2	+	protein_coding	chr17	26782769	26941201	AC005726.1	-	nonsense_mediated_decay	24489	opposite	12071_ID	chr17	26800311	26824796	24486	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
4511	ENST00000445838.1_1	ENST00000537989.5_4	chr6	90660129	90662905	AL121787.1	+	lncRNA	chr6	90636247	91006627	BACH2	-	protein_coding	3071	opposite	4752_ID	chr6	90660130	90662905	2776	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	7
4513	ENST00000445897.2_3	ENST00000637185.1_2	chr9	108823634	108827106	AL732323.1	-	lncRNA	chr9	108755590	109464943	LINC01505	+	lncRNA	3472	opposite	5905_ID	chr9	108823635	108827106	3472	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
4538	ENST00000446433.1_3	ENST00000366618.8_3	chr1	234404328	234408246	SLC35F3-AS1	-	lncRNA	chr1	234040421	234460257	SLC35F3	+	protein_coding	3918	opposite	12092_ID	chr1	234404329	234408246	3918	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
4546	ENST00000446631.2_3	ENST00000374791.7_1	chr11	131850989	131854555	AP000844.1	-	lncRNA	chr11	131240372	132206716	NTM	+	protein_coding	3566	opposite	6036_ID	chr11	131850990	131854555	3566	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
4585	ENST00000447644.1_3	ENST00000380379.10_5	chr6	3138627	3153296	AL031963.1	-	lncRNA	chr6	3118944	3153812	BPHL	+	protein_coding	14669	opposite	4567_ID	chr6	3138628	3153296	14669	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	7
4630	ENST00000448927.1_1	ENST00000339818.9_5	chr21	45751116	45755734	AP001062.1	+	lncRNA	chr21	45748826	45759273	CFAP410	-	protein_coding	4618	opposite	6089_ID	chr21	45751117	45755734	4618	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
4669	ENST00000450155.5_3	ENST00000356415.5_1	chr1	112142276	112150940	LINC01160	-	lncRNA	chr1	112084839	112255735	RAP1A	+	protein_coding	9069	opposite	7614_ID	chr1	112142277	112150940	8664	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
4690	ENST00000451034.1_3	ENST00000606639.1_1	chr2	56304551	56317517	LINC01813	-	lncRNA	chr2	56179292	56408787	AC011306.1	+	lncRNA	12966	opposite	7683_ID	chr2	56304552	56317517	12966	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
4794	ENST00000453525.1_1	ENST00000429204.5_3	chr1	226856597	226864046	ITPKB-AS1	+	lncRNA	chr1	226819390	226926876	ITPKB	-	protein_coding	7449	opposite	7382_ID	chr1	226856598	226864046	7449	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
4803	ENST00000453810.1_3	ENST00000376759.8_2	chrX	48438161	48439545	AC115618.2	-	lncRNA	chrX	48432871	48439550	RBM3	+	protein_coding	1384	opposite	3888_ID	chrX	48438162	48439545	1384	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
4842	ENST00000454957.1_3	ENST00000651909.1_1	chr7	124791379	124793665	LINC02830	-	lncRNA	chr7	124569996	125123020	POT1-AS1	+	lncRNA	2286	opposite	7804_ID	chr7	124791380	124793665	2286	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
4857	ENST00000455336.2_3	ENST00000376834.8_4	chr9	77624743	77630952	AL158825.2	-	lncRNA	chr9	77595705	77643209	CARNMT1	-	protein_coding	6209	same	5115_ID	chr9	77624744	77630952	6209	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
4884	ENST00000456078.1_1	ENST00000366618.8_3	chr1	234397451	234410211	AL122008.1	+	lncRNA	chr1	234040421	234460257	SLC35F3	+	protein_coding	12760	same	4793_ID	chr1	234397452	234410211	12760	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
4919	ENST00000456809.1_3	ENST00000639998.1_1	chr7	13378825	13404674	AC011287.2	-	lncRNA	chr7	12765776	13744165	AC011287.1	+	lncRNA	25849	opposite	1185_ID	chr7	13378826	13404674	25849	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
4954	ENST00000457625.2_3	ENST00000417485.6_1	chr2	216444129	216447358	AC012668.1	-	lncRNA	chr2	216410920	216578618	AC012668.3	+	lncRNA	3229	opposite	1423_ID	chr2	216444130	216447358	3229	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
4961	ENST00000457964.1_1	ENST00000355497.10_3	chr9	129403034	129403572	AL161908.2	+	lncRNA	chr9	129376206	129463311	LMX1B	+	protein_coding	538	same	5181_ID	chr9	129403035	129403572	538	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
4987	ENST00000458760.1	ENST00000261658.7_2	chr16	14737644	14737706	RNU7-125P	+	snRNA	chr16	14726807	14763093	BFAR	+	protein_coding	62	same	11712_ID	chr16	14737645	14737706	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
5067	ENST00000459213.1	ENST00000524381.5_3	chr11	133372771	133372851	AP005638.1	+	miRNA	chr11	132284874	133402414	OPCML	-	protein_coding	80	opposite	6304_ID	chr11	133372772	133372851	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
5088	ENST00000459332.1	ENST00000551312.6_6	chr15	25232071	25232142	SNORD108	+	snoRNA	chr15	25200180	25245423	AC124312.1	+	nonsense_mediated_decay	71	same	12230_ID	chr15	25232072	25232142	71	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
5178	ENST00000462176.2_3	ENST00000329582.9_2	chr3	136677966	136701038	IL20RB-AS1	-	lncRNA	chr3	136676824	136729927	IL20RB	+	protein_coding	23072	opposite	7350_ID	chr3	136677967	136701038	23072	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
5194	ENST00000463167.1_5	ENST00000465804.5_3	chr3	149366783	149367971	WWTR1-IT1	-	lncRNA	chr3	149235021	149421060	WWTR1	-	protein_coding	1188	same	12920_ID	chr3	149366784	149367971	1188	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
5204	ENST00000463845.2	ENST00000446425.2_1	chr2	24219666	24219955	RN7SL610P	-	misc_RNA	chr2	24150154	24223690	UBXN2A	+	processed_transcript	289	opposite	10303_ID	chr2	24219667	24219955	289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
5255	ENST00000467740.2	ENST00000287437.8_2	chr8	126282845	126283142	RN7SL329P	+	misc_RNA	chr8	126104101	126379362	NSMCE2	+	protein_coding	297	same	10109_ID	chr8	126282846	126283142	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
5275	ENST00000469092.5_4	ENST00000340415.7_1	chr17	72690455	72709117	CD300LF	-	protein_coding	chr17	72666716	72743473	RAB37	+	protein_coding	18668	opposite	6594_ID	chr17	72690456	72709117	18662	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
5278	ENST00000469306.2	ENST00000627851.2_1	chr11	126114929	126115175	RN7SL351P	+	misc_RNA	chr11	126081618	126132879	FAM118B	+	protein_coding	246	same	10124_ID	chr11	126114930	126115175	246	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
5379	ENST00000475197.1_1	ENST00000437082.5_5	chr3	10326102	10327430	LINC00852	+	lncRNA	chr3	10291055	10327480	AC022384.1	+	nonsense_mediated_decay	1328	same	7577_ID	chr3	10326103	10327430	1328	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
5405	ENST00000477009.2_1	ENST00000425327.6_6	chr3	118661919	118667088	IGSF11-AS1	+	lncRNA	chr3	118619403	118864915	IGSF11	-	protein_coding	5169	opposite	7342_ID	chr3	118661920	118667088	5169	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
5428	ENST00000478664.2	ENST00000591680.6_5	chr17	42486428	42486726	RN7SL258P	-	misc_RNA	chr17	42472648	42580774	GPATCH8	-	protein_coding	298	same	10059_ID	chr17	42486429	42486726	298	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
5443	ENST00000479548.2_4	ENST00000650763.1_1	chr21	34162983	34186013	C21orf62	-	protein_coding	chr21	34144514	34309557	C21orf62-AS1	+	lncRNA	23070	opposite	6504_ID	chr21	34162984	34186013	23030	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
5444	ENST00000479610.1_1	ENST00000656238.1_3	chr3	127208395	127209630	AC016968.1	+	lncRNA	chr3	127199533	127256630	LINC01471	-	lncRNA	1235	opposite	1575_ID	chr3	127208396	127209630	1235	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
5447	ENST00000479752.1_1	ENST00000465804.5_3	chr3	149375996	149379151	WWTR1-AS1	+	lncRNA	chr3	149235021	149421060	WWTR1	-	protein_coding	4366	opposite	12919_ID	chr3	149375997	149379151	3155	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
5448	ENST00000479991.1_3	ENST00000633930.1_4	chrX	71346959	71351751	RTL5	-	nonsense_mediated_decay	chrX	71130667	71373136	NHSL2	+	protein_coding	4792	opposite	11977_ID	chrX	71346960	71351751	4792	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
5464	ENST00000481442.2	ENST00000377503.6_3	chr5	159718794	159719067	RN7SL295P	+	misc_RNA	chr5	159678659	159766657	CCNJL	-	processed_transcript	273	opposite	10086_ID	chr5	159718795	159719067	273	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
5467	ENST00000481561.2	ENST00000373479.9_2	chr6	37328960	37329256	RN7SL273P	+	misc_RNA	chr6	37321758	37362510	RNF8	+	protein_coding	296	same	10070_ID	chr6	37328961	37329256	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
5526	ENST00000485298.2	ENST00000368919.8_5	chr6	110761201	110761506	RN7SL617P	-	misc_RNA	chr6	110745889	110797816	SLC22A16	-	protein_coding	305	same	10310_ID	chr6	110761202	110761506	305	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
5529	ENST00000485340.2	ENST00000581589.5_1	chr17	73037829	73038102	RN7SL573P	+	misc_RNA	chr17	73028706	73059358	KCTD2	+	protein_coding	273	same	10278_ID	chr17	73037830	73038102	273	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
5533	ENST00000485522.2	ENST00000366997.9_4	chr1	211965454	211965748	RN7SL344P	-	misc_RNA	chr1	211916798	212004105	LPGAT1	-	protein_coding	294	same	10117_ID	chr1	211965455	211965748	294	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
5551	ENST00000487337.2	ENST00000356853.10_3	chr2	219967155	219967437	RN7SL764P	+	misc_RNA	chr2	219934078	220025537	NHEJ1	-	protein_coding	282	opposite	10417_ID	chr2	219967156	219967437	282	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
5579	ENST00000489872.2	ENST00000471658.5_4	chr13	20311116	20311394	RN7SL166P	-	misc_RNA	chr13	20248895	20357057	PSPC1	-	nonsense_mediated_decay	278	same	9987_ID	chr13	20311117	20311394	278	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
5663	ENST00000495587.2	ENST00000481534.5_5	chr9	124256796	124257097	RN7SL187P	+	misc_RNA	chr9	124207268	124262036	GGTA1	-	nonsense_mediated_decay	301	opposite	10004_ID	chr9	124256797	124257097	301	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
5675	ENST00000496488.1_3	ENST00000466557.6_3	chr1	160445	161525	AL627309.4	+	lncRNA	chr1	146385	173862	AL627309.5	-	lncRNA	1080	opposite	5854_ID	chr1	160446	161525	1080	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
5684	ENST00000496975.2_1	ENST00000422447.8_2	chr11	18427155	18428278	AC084117.1	+	lncRNA	chr11	18416109	18429972	LDHA	+	protein_coding	1123	same	2736_ID	chr11	18427156	18428278	1123	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
5701	ENST00000498304.5_3	ENST00000426972.8_3	chr1	85953981	86043933	AC092807.3	-	lncRNA	chr1	85784163	86044046	DDAH1	-	protein_coding	95970	same	3154_ID	chr1	85953982	86043933	89952	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	7
5742	ENST00000501133.2_1	ENST00000338145.7_4	chr4	103749211	103765232	UBE2D3-AS1	+	lncRNA	chr4	103718408	103790032	UBE2D3	-	protein_coding	16021	opposite	12840_ID	chr4	103749212	103765232	16021	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
5753	ENST00000501818.1_3	ENST00000393980.8_1	chr5	159623597	159631833	FABP6-AS1	-	lncRNA	chr5	159614373	159665742	FABP6	+	protein_coding	9083	opposite	6955_ID	chr5	159623598	159631833	8236	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
5820	ENST00000504555.1_3	ENST00000649704.1_3	chr4	146563487	146571776	AC093864.1	-	lncRNA	chr4	146520212	146576613	MMAA	+	protein_coding	8289	opposite	3252_ID	chr4	146563488	146571776	8289	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
5829	ENST00000504846.1_1	ENST00000282185.8_3	chr5	81368873	81369521	ATG10-AS1	-	lncRNA	chr5	81267841	81551952	ATG10	+	protein_coding	648	opposite	6362_ID	chr5	81368874	81369521	648	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
5839	ENST00000505040.2_3	ENST00000642024.1_1	chr5	25219081	25298721	AC099499.1	-	lncRNA	chr5	25190518	25324495	LINC02211	+	lncRNA	79640	opposite	3363_ID	chr5	25219082	25298721	79640	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
5873	ENST00000506172.2_3	ENST00000397396.5_1	chr11	856879	859795	AP006623.1	-	lncRNA	chr11	842823	867116	TSPAN4	+	protein_coding	2916	opposite	6320_ID	chr11	856880	859795	2916	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
5875	ENST00000506254.5_3	ENST00000658348.1_1	chr3	139279021	139396859	NMNAT3	-	nonsense_mediated_decay	chr3	139108641	139501541	AC046134.2	+	lncRNA	117838	opposite	9274_ID	chr3	139279022	139396859	117838	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
5885	ENST00000506504.3_1	ENST00000300408.8_3	chr17	47481442	47482559	AC091180.3	+	lncRNA	chr17	47481413	47492244	PHB	-	protein_coding	1117	opposite	2992_ID	chr17	47481443	47482559	1117	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	7
5909	ENST00000507056.1_1	ENST00000512517.1_3	chr4	38511387	38519677	LINC01259	+	lncRNA	chr4	38422282	38524801	LINC01258	-	lncRNA	8290	opposite	7625_ID	chr4	38511388	38519677	8290	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
5933	ENST00000507918.5_2	ENST00000486319.5_4	chr7	102191678	102202516	SPDYE2	+	protein_coding	chr7	102178366	102213096	POLR2J3	-	nonsense_mediated_decay	11077	opposite	12520_ID	chr7	102191679	102202516	10838	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
5943	ENST00000508048.6_4	ENST00000500538.7_2	chr4	68775112	68829211	TMPRSS11A	-	protein_coding	chr4	68566996	68946670	UBA6-AS1	+	lncRNA	54746	opposite	12745_ID	chr4	68775113	68829211	54099	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
5946	ENST00000508187.1_1	ENST00000614420.4_4	chr5	175774943	175780587	AC138956.1	+	lncRNA	chr5	175773067	175788810	KIAA1191	-	protein_coding	5644	opposite	4199_ID	chr5	175774944	175780587	5644	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
5969	ENST00000509080.5_1	ENST00000274773.12_4	chr5	180625199	180630103	TRIM7-AS1	+	lncRNA	chr5	180620923	180632196	TRIM7	-	protein_coding	7608	opposite	12787_ID	chr5	180625200	180630103	4904	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
5975	ENST00000509350.1_1	ENST00000395601.7_3	chr8	121773492	121789072	AC104958.1	+	lncRNA	chr8	121547984	121825513	SNTB1	-	protein_coding	15580	opposite	3573_ID	chr8	121773493	121789072	15580	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
5977	ENST00000509356.2_2	ENST00000451941.6_1	chr7	90098952	90142711	AC002456.2	+	protein_coding	chr7	90034894	90142716	CLDN12	+	processed_transcript	43759	same	52_ID	chr7	90098953	90142711	43759	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
6004	ENST00000510240.1_1	ENST00000522208.6_4	chr5	179390614	179391419	AC010285.1	+	lncRNA	chr5	179338650	179498721	RNF130	-	protein_coding	805	opposite	1047_ID	chr5	179390615	179391419	805	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
6006	ENST00000510317.2_1	ENST00000539652.1_3	chr12	66524530	66528229	LLPH-DT	+	lncRNA	chr12	66517696	66563765	AC078927.1	-	nonsense_mediated_decay	3699	opposite	7832_ID	chr12	66524531	66528229	3699	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
6021	ENST00000510882.4_2	ENST00000652081.1_1	chr6	22569794	22571895	HDGFL1	+	protein_coding	chr6	22349668	22654684	CASC15	+	lncRNA	2101	same	7224_ID	chr6	22569795	22571895	2101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
6046	ENST00000511626.2_3	ENST00000297130.4_1	chr5	150050219	150051952	AC008453.1	-	lncRNA	chr5	150040443	150058927	MYOZ3	+	protein_coding	1733	opposite	732_ID	chr5	150050220	150051952	1733	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
6099	ENST00000512934.1_1	ENST00000614420.4_4	chr5	175781208	175783171	AC138956.2	+	lncRNA	chr5	175773067	175788810	KIAA1191	-	protein_coding	1963	opposite	4200_ID	chr5	175781209	175783171	1963	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
6115	ENST00000513542.1_3	ENST00000302085.9_3	chr4	146435766	146438270	SMAD1-AS1	-	lncRNA	chr4	146403004	146480328	SMAD1	+	protein_coding	2504	opposite	12119_ID	chr4	146435767	146438270	2504	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
6135	ENST00000514187.1_1	ENST00000295971.12_6	chr4	40428135	40429602	AC098869.2	+	lncRNA	chr4	40425296	40631881	RBM47	-	protein_coding	1467	opposite	3348_ID	chr4	40428136	40429602	1467	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	7
6161	ENST00000514864.1_1	ENST00000280187.11_3	chr4	176711457	176733340	AC097537.1	+	lncRNA	chr4	176554084	176923483	GPM6A	-	protein_coding	21883	opposite	3326_ID	chr4	176711458	176733340	21883	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
6182	ENST00000515542.1_3	ENST00000302334.3_2	chr3	133148112	133174620	BFSP2-AS1	-	lncRNA	chr3	133118899	133194052	BFSP2	+	protein_coding	26508	opposite	6411_ID	chr3	133148113	133174620	26508	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
6223	ENST00000515945.1	ENST00000366522.6_1	chr1	245207229	245207334	RNU6-999P	+	snRNA	chr1	245133283	245290466	EFCAB2	+	protein_coding	105	same	11660_ID	chr1	245207230	245207334	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
6267	ENST00000516093.1	ENST00000382592.5_4	chr13	21573505	21573606	RNU6-51P	-	snRNA	chr13	21547174	21635725	LATS2	-	protein_coding	101	same	11305_ID	chr13	21573506	21573606	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
6269	ENST00000516098.1	ENST00000553645.7_2	chr14	74126266	74126363	RNU6-240P	-	snRNA	chr14	74111688	74170435	DNAL1	+	protein_coding	97	opposite	11094_ID	chr14	74126267	74126363	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
6274	ENST00000516113.1	ENST00000379959.8_6	chr10	6059016	6059157	SNORA14	-	snoRNA	chr10	6052651	6104330	IL2RA	-	protein_coding	141	same	12158_ID	chr10	6059017	6059157	141	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
6275	ENST00000516118.1	ENST00000465039.5_1	chr3	45633746	45633819	AC099539.1	+	miRNA	chr3	45596885	45714998	LIMD1	+	processed_transcript	73	same	3378_ID	chr3	45633747	45633819	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
6290	ENST00000516162.1	ENST00000414443.5_1	chr2	238937611	238937704	RNU6-1333P	-	snRNA	chr2	238875596	238951423	UBE2F	+	protein_coding	93	opposite	11017_ID	chr2	238937612	238937704	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
6297	ENST00000516179.1	ENST00000546087.5_5	chr6	160141446	160141572	RNU4ATAC18P	-	snRNA	chr6	160100150	160183561	SOD2	-	protein_coding	126	same	10728_ID	chr6	160141447	160141572	126	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
6317	ENST00000516226.1	ENST00000382080.6_4	chr8	14345284	14345388	RNU6-397P	-	snRNA	chr8	13942353	15095940	SGCZ	-	protein_coding	104	same	11204_ID	chr8	14345285	14345388	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
6321	ENST00000516246.1	ENST00000340473.8_2	chr13	45711996	45712100	RNU6-69P	-	snRNA	chr13	45694644	45859028	GTF2F2	+	protein_coding	104	opposite	11438_ID	chr13	45711997	45712100	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
6358	ENST00000516348.1	ENST00000326397.10_5	chr4	184574724	184574829	RNU6-479P	-	snRNA	chr4	184560787	184580338	RWDD4	-	protein_coding	105	same	11269_ID	chr4	184574725	184574829	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
6390	ENST00000516455.1	ENST00000382080.6_4	chr8	14176963	14177025	RNU7-153P	+	snRNA	chr8	13942353	15095940	SGCZ	-	protein_coding	62	opposite	11729_ID	chr8	14176964	14177025	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
6398	ENST00000516473.1	ENST00000366522.6_1	chr1	245186316	245186420	RNU6-1089P	+	snRNA	chr1	245133283	245290466	EFCAB2	+	protein_coding	104	same	10823_ID	chr1	245186317	245186420	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
6421	ENST00000516542.1	ENST00000374791.7_1	chr11	131255143	131255258	RNU6ATAC12P	+	snRNA	chr11	131240372	132206716	NTM	+	protein_coding	115	same	11663_ID	chr11	131255144	131255258	115	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
6446	ENST00000516604.1	ENST00000470018.5_1	chr1	40189237	40189299	RNU7-121P	-	snRNA	chr1	40157853	40211075	PPIE	+	protein_coding	62	opposite	11707_ID	chr1	40189238	40189299	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
6470	ENST00000516680.1	ENST00000636006.1_2	chr4	57154650	57154750	RNU6-197P	-	snRNA	chr4	56916012	57180829	CRACD	+	protein_coding	100	opposite	11065_ID	chr4	57154651	57154750	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
6475	ENST00000516699.1	ENST00000377067.9_2	chr13	92712096	92712222	RNU4ATAC3P	+	snRNA	chr13	92050874	93519490	GPC5	+	protein_coding	126	same	10731_ID	chr13	92712097	92712222	126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
6481	ENST00000516721.1	ENST00000657394.1_1	chr1	102194197	102194293	RNU6-965P	-	snRNA	chr1	102105122	102253128	LINC01709	+	lncRNA	96	opposite	11641_ID	chr1	102194198	102194293	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
6485	ENST00000516733.1	ENST00000323345.11_2	chr9	136217701	136217767	SNORD36C	+	snoRNA	chr9	136215072	136218281	RPL7A	+	protein_coding	66	same	12403_ID	chr9	136217702	136217767	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
6500	ENST00000516772.1	ENST00000465804.5_3	chr3	149243417	149243513	RNU6-1098P	+	snRNA	chr3	149235021	149421060	WWTR1	-	protein_coding	96	opposite	10827_ID	chr3	149243418	149243513	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
6509	ENST00000516802.1	ENST00000298746.5_2	chr10	116729218	116729327	RNU6-1121P	-	snRNA	chr10	116697953	116737435	TRUB1	+	protein_coding	109	opposite	10840_ID	chr10	116729219	116729327	109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
6518	ENST00000516824.1	ENST00000528056.5_2	chrY	7192337	7192636	RN7SKP282	-	misc_RNA	chrY	7142012	7249589	PRKY	+	processed_transcript	299	opposite	9876_ID	chrY	7192338	7192636	299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
6540	ENST00000516894.1	ENST00000524381.5_3	chr11	132395702	132395781	RNU6-1182P	+	snRNA	chr11	132284874	133402414	OPCML	-	protein_coding	79	opposite	10885_ID	chr11	132395703	132395781	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
6542	ENST00000516903.1	ENST00000562124.5_5	chr15	66639544	66639680	SCARNA14	-	snoRNA	chr15	66629318	66679062	TIPIN	-	protein_coding	136	same	11993_ID	chr15	66639545	66639680	136	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
6550	ENST00000516930.1	ENST00000338145.7_4	chr4	103758203	103758256	RNU7-151P	-	snRNA	chr4	103718408	103790032	UBE2D3	-	protein_coding	53	same	11727_ID	chr4	103758204	103758256	53	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
6557	ENST00000516945.1	ENST00000453919.1	chr10	48206894	48207010	RNA5SP313	-	rRNA	chr10	48189611	48237508	AGAP9	+	protein_coding	116	opposite	10514_ID	chr10	48206895	48207010	116	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
6566	ENST00000516960.1	ENST00000527847.5_3	chr11	7910728	7910826	RNU6-943P	-	snRNA	chr11	7872297	7927502	AC044810.2	-	lncRNA	98	same	11625_ID	chr11	7910729	7910826	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
6598	ENST00000517051.1	ENST00000367362.8_4	chr1	200023188	200023293	RNU6-570P	+	snRNA	chr1	199996837	200146543	NR5A2	+	protein_coding	105	same	11344_ID	chr1	200023189	200023293	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
6605	ENST00000517068.1	ENST00000413193.2	chr10	47222340	47222456	RNA5SP312	+	rRNA	chr10	47191843	47239738	AGAP10	-	protein_coding	116	opposite	10512_ID	chr10	47222341	47222456	116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
6615	ENST00000517083.1	ENST00000234256.4_2	chr2	65221879	65221994	RNU6-548P	+	snRNA	chr2	65216532	65250999	SLC1A4	+	protein_coding	115	same	11330_ID	chr2	65221880	65221994	115	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
6638	ENST00000517143.1	ENST00000218867.4_2	chr13	23791570	23791673	RNU6-58P	-	snRNA	chr13	23755117	23899301	SGCG	+	protein_coding	103	opposite	11361_ID	chr13	23791571	23791673	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
6654	ENST00000517185.1	ENST00000647664.1_1	chr10	104563685	104563788	RNU6-1231P	+	snRNA	chr10	104503738	104593605	WBP1L	+	nonsense_mediated_decay	103	same	10929_ID	chr10	104563686	104563788	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
6655	ENST00000517192.1	ENST00000503008.5_3	chr4	164749951	164750265	RN7SKP105	-	misc_RNA	chr4	164445869	165305202	MARCHF1	-	protein_coding	314	same	9762_ID	chr4	164749952	164750265	314	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
6710	ENST00000517349.2_2	ENST00000355904.9_4	chr8	30496096	30503581	SMIM18	+	protein_coding	chr8	30435834	30515753	GTF2E2	-	protein_coding	7485	opposite	12128_ID	chr8	30496097	30503581	7485	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
6729	ENST00000517920.1_1	ENST00000285419.8_5	chr8	92028815	92030883	AC087439.1	+	lncRNA	chr8	92006029	92053087	PIP4P2	-	protein_coding	2068	opposite	2817_ID	chr8	92028816	92030883	2068	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
6738	ENST00000518078.1_3	ENST00000674864.1_1	chr8	63385775	63386828	AC018861.2	-	lncRNA	chr8	63161412	63926559	NKAIN3	+	protein_coding	1053	opposite	1670_ID	chr8	63385776	63386828	1053	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
6745	ENST00000518339.1_3	ENST00000651999.1_1	chr8	126761298	126762485	AC016074.1	-	lncRNA	chr8	126660570	126967836	AC016074.2	+	lncRNA	1187	opposite	1519_ID	chr8	126761299	126762485	1187	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
6748	ENST00000518387.1_1	ENST00000377360.8_3	chr5	169816496	169849848	KCNIP1-OT1	+	lncRNA	chr5	169780490	170162939	KCNIP1	+	protein_coding	33352	same	7417_ID	chr5	169816497	169849848	33352	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
6796	ENST00000519805.1_1	ENST00000407775.7_2	chr8	106682218	106691259	AC103853.2	+	lncRNA	chr8	106330665	106816767	ZFPM2	+	protein_coding	9041	same	3480_ID	chr8	106682219	106691259	9041	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
6806	ENST00000520155.1_3	ENST00000663058.1_1	chr8	83010685	83072812	LINC02839	-	lncRNA	chr8	82945767	83865313	AC060765.2	+	lncRNA	62127	opposite	7805_ID	chr8	83010686	83072812	62127	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
6817	ENST00000520588.1_3	ENST00000407775.7_2	chr8	106674579	106697993	AC103853.1	-	lncRNA	chr8	106330665	106816767	ZFPM2	+	protein_coding	23414	opposite	3478_ID	chr8	106674580	106697993	23414	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
6832	ENST00000520993.1_1	ENST00000490437.5_3	chr7	87845974	87848541	SRI-AS1	+	lncRNA	chr7	87835752	87856291	SRI	-	protein_coding	2567	opposite	12545_ID	chr7	87845975	87848541	2567	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
6848	ENST00000521556.1_1	ENST00000677327.1_1	chr8	63936930	63937853	AC120042.2	+	lncRNA	chr8	63927712	63951966	GGH	-	retained_intron	923	opposite	3957_ID	chr8	63936931	63937853	923	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
6865	ENST00000522127.1_3	ENST00000523442.5_1	chr8	75521932	75545555	AC115837.1	-	lncRNA	chr8	75512015	75735548	MIR2052HG	+	lncRNA	23623	opposite	3889_ID	chr8	75521933	75545555	23623	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
6884	ENST00000522640.1_1	ENST00000355904.9_4	chr8	30454430	30455049	AC102945.1	+	lncRNA	chr8	30435834	30515753	GTF2E2	-	protein_coding	619	opposite	3448_ID	chr8	30454431	30455049	619	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
6912	ENST00000523591.1_3	ENST00000377360.8_3	chr5	170066161	170108441	KCNIP1-AS1	-	lncRNA	chr5	169780490	170162939	KCNIP1	+	protein_coding	42280	opposite	7416_ID	chr5	170066162	170108441	42280	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
6935	ENST00000524312.1_3	ENST00000377360.8_3	chr5	169910809	169913411	AC008619.1	-	lncRNA	chr5	169780490	170162939	KCNIP1	+	protein_coding	2602	opposite	756_ID	chr5	169910810	169913411	2602	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
6946	ENST00000524707.1_1	ENST00000532947.2_1	chr11	28538378	28540888	AC013714.1	+	lncRNA	chr11	28131712	28548588	METTL15	+	nonsense_mediated_decay	2510	same	1460_ID	chr11	28538379	28540888	2510	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
6967	ENST00000526089.1_1	ENST00000326132.11_2	chr22	31601249	31601602	RNF185-AS1	-	lncRNA	chr22	31556167	31603005	RNF185	+	protein_coding	353	opposite	10543_ID	chr22	31601250	31601602	353	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
6994	ENST00000526947.1_3	ENST00000287437.8_2	chr8	126360437	126363658	AC084083.1	-	lncRNA	chr8	126104101	126379362	NSMCE2	+	protein_coding	3221	opposite	2735_ID	chr8	126360438	126363658	3221	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
7064	ENST00000529229.1_1	ENST00000341398.6_3	chr11	119580629	119584635	NECTIN1-AS1	+	lncRNA	chr11	119508807	119599263	NECTIN1	-	protein_coding	4006	opposite	9250_ID	chr11	119580630	119584635	4006	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
7077	ENST00000529868.1_1	ENST00000354588.7_3	chr11	62432784	62435968	CSKMT	+	retained_intron	chr11	62430288	62439241	LBHD1	-	protein_coding	3188	opposite	6718_ID	chr11	62432785	62435968	3184	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
7129	ENST00000531379.1_3	ENST00000262646.12_2	chr8	61464515	61465595	AC068389.3	-	lncRNA	chr8	61429545	61536203	RAB2A	+	protein_coding	1080	opposite	2403_ID	chr8	61464516	61465595	1080	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
7130	ENST00000531395.1_3	ENST00000538689.4_1	chr8	11655436	11660021	AC069185.1	-	lncRNA	chr8	11653081	11696813	FDFT1	+	protein_coding	4641	opposite	2471_ID	chr8	11655437	11660021	4585	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
7154	ENST00000532068.1_3	ENST00000652577.1_1	chr11	45755544	45757317	AC044839.2	-	lncRNA	chr11	45743868	45769580	AC044839.1	+	lncRNA	1773	opposite	2303_ID	chr11	45755545	45757317	1773	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
7175	ENST00000532973.2_3	ENST00000382080.6_4	chr8	14736565	14737328	AC084838.1	-	lncRNA	chr8	13942353	15095940	SGCZ	-	protein_coding	763	same	2768_ID	chr8	14736566	14737328	763	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
7180	ENST00000533260.1_3	ENST00000524381.5_3	chr11	132729139	132729972	OPCML-IT2	-	lncRNA	chr11	132284874	133402414	OPCML	-	protein_coding	833	same	9340_ID	chr11	132729140	132729972	833	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
7199	ENST00000533859.1_3	ENST00000524381.5_3	chr11	133229923	133235975	OPCML-IT1	-	lncRNA	chr11	132284874	133402414	OPCML	-	protein_coding	6052	same	9339_ID	chr11	133229924	133235975	6052	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
7272	ENST00000538624.1_1	ENST00000310653.10_5	chr11	73433393	73433739	AP002993.1	+	lncRNA	chr11	73386682	73472182	RAB6A	-	protein_coding	346	opposite	6225_ID	chr11	73433394	73433739	346	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
7300	ENST00000539784.1_1	ENST00000537971.5_1	chr12	3258962	3260642	TSPAN9-IT1	+	lncRNA	chr12	3186520	3395730	TSPAN9	+	protein_coding	1680	same	12798_ID	chr12	3258963	3260642	1680	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
7311	ENST00000540479.5_3	ENST00000637888.1_4	chr15	68483043	68498448	CALML4	-	protein_coding	chr15	68476369	68522031	AC107871.1	-	nonsense_mediated_decay	15406	same	6543_ID	chr15	68483044	68498448	15405	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	7
7328	ENST00000541899.2_2	ENST00000307198.11_3	chr11	71816969	71820375	AP000812.3	+	protein_coding	chr11	71791376	71821823	AP000812.4	+	protein_coding	3406	same	6033_ID	chr11	71816970	71820375	3406	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	7
7366	ENST00000544086.1_1	ENST00000298573.9_4	chr12	12638286	12644515	AC007619.1	+	lncRNA	chr12	12626215	12715797	DUSP16	-	protein_coding	6229	opposite	617_ID	chr12	12638287	12644515	6229	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	7
7374	ENST00000544381.4_2	ENST00000490935.5_3	chr2	63815742	63834328	MDH1	+	protein_coding	chr2	63711737	64054977	WDPCP	-	processed_transcript	18589	opposite	7936_ID	chr2	63815743	63834328	18586	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
7385	ENST00000545249.5_3	ENST00000307198.11_3	chr11	71796940	71814292	LAMTOR1	-	protein_coding	chr11	71791376	71821823	AP000812.4	+	protein_coding	17403	opposite	7506_ID	chr11	71796941	71814292	17352	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
7398	ENST00000545990.6_4	ENST00000536588.1_4	chr12	4724673	4758213	AKAP3	-	protein_coding	chr12	4714109	4771809	AC005832.4	+	nonsense_mediated_decay	33544	opposite	4426_ID	chr12	4724674	4758213	33540	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	7
7402	ENST00000546101.1_3	ENST00000445693.5_3	chr12	25738927	25745859	AC022367.1	-	lncRNA	chr12	25650446	25801488	LMNTD1	-	protein_coding	6935	same	1850_ID	chr12	25738928	25745859	6932	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
7486	ENST00000549251.1_3	ENST00000548458.6_1	chr12	105698644	105720795	KCCAT198	-	lncRNA	chr12	105629067	105764958	C12orf75	+	processed_transcript	22151	opposite	7399_ID	chr12	105698645	105720795	22151	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
7494	ENST00000549683.1_1	ENST00000398073.7_4	chr12	58230874	58236528	AC083805.2	+	lncRNA	chr12	58213709	58240512	CTDSP2	-	protein_coding	5654	opposite	2710_ID	chr12	58230875	58236528	5654	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
7528	ENST00000551479.1_3	ENST00000517298.5_1	chr8	86158523	86162077	AC011773.2	-	lncRNA	chr8	86132844	86180856	CA13	+	processed_transcript	3554	opposite	1295_ID	chr8	86158524	86162077	3554	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
7548	ENST00000552558.1_3	ENST00000266534.8_2	chr12	44638176	44657765	AC025030.2	-	lncRNA	chr12	44229883	44783541	TMEM117	+	protein_coding	19589	opposite	2043_ID	chr12	44638177	44657765	19589	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
7555	ENST00000552780.1_3	ENST00000261263.5_2	chr12	72187634	72193407	AC089984.1	-	lncRNA	chr12	72148642	72194066	RAB21	+	protein_coding	5773	opposite	2859_ID	chr12	72187635	72193407	5773	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
7567	ENST00000553301.1_1	ENST00000637716.1_5	chr14	101005275	101006746	AL845552.2	+	lncRNA	chr14	101003485	101044289	BEGAIN	-	protein_coding	1471	opposite	5917_ID	chr14	101005276	101006746	1471	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	7
7586	ENST00000553758.1_1	ENST00000167106.9_3	chr14	77245294	77248592	AF111169.1	+	lncRNA	chr14	77227810	77249358	VASH1	+	protein_coding	3298	same	4380_ID	chr14	77245295	77248592	3298	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
7595	ENST00000554022.1_3	ENST00000266970.9_2	chr12	56360621	56361258	AC025162.1	-	lncRNA	chr12	56360613	56366573	CDK2	+	protein_coding	637	opposite	2052_ID	chr12	56360622	56361258	637	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	7
7655	ENST00000555913.1_1	ENST00000554305.5_3	chr14	88277325	88304683	AL136501.1	+	lncRNA	chr14	88176762	88338635	AL359237.1	-	lncRNA	27358	opposite	4916_ID	chr14	88277326	88304683	27358	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
7673	ENST00000556368.1_3	ENST00000167106.9_3	chr14	77240626	77247861	AF111169.3	-	lncRNA	chr14	77227810	77249358	VASH1	+	protein_coding	7235	opposite	4381_ID	chr14	77240627	77247861	7235	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	7
7724	ENST00000557981.1_1	ENST00000261917.4_5	chr15	73627616	73634728	AC068397.2	+	lncRNA	chr15	73612199	73661299	HCN4	-	protein_coding	7128	opposite	2405_ID	chr15	73627617	73634728	7112	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
7726	ENST00000558006.1_1	ENST00000261868.10_2	chr15	44850026	44851386	AC009996.1	+	lncRNA	chr15	44829344	44855001	EIF3J	+	protein_coding	1360	same	1018_ID	chr15	44850027	44851386	1360	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
7789	ENST00000559369.5_1	ENST00000448407.1_3	chr13	106118215	106143383	DAOA	+	nonsense_mediated_decay	chr13	106111403	106158030	DAOA-AS1	-	lncRNA	25168	opposite	6766_ID	chr13	106118216	106143383	25168	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
7801	ENST00000559614.2_1	ENST00000557978.6_3	chr19	19717158	19719469	AC002306.1	+	lncRNA	chr19	19672515	19729502	PBX4	-	nonsense_mediated_decay	2311	opposite	43_ID	chr19	19717159	19719469	2311	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
7806	ENST00000559730.1_3	ENST00000561234.5_5	chr15	40756391	40758925	AC013356.2	-	lncRNA	chr15	40731919	40760428	BAHD1	+	protein_coding	2534	opposite	1433_ID	chr15	40756392	40758925	2534	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	7
7838	ENST00000560446.1_1	ENST00000267970.9_4	chr15	77336021	77337502	AC090181.1	+	lncRNA	chr15	77333744	77363451	TSPAN3	-	protein_coding	1481	opposite	2876_ID	chr15	77336022	77337502	1481	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
7926	ENST00000562493.1_1	ENST00000665996.1_3	chr19	28248091	28251757	AC006504.1	-	lncRNA	chr19	28172123	28284611	LINC00662	-	lncRNA	3666	same	471_ID	chr19	28248092	28251757	3666	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
7929	ENST00000562538.1_3	ENST00000369831.6_1	chr1	110235738	110236364	AC000032.1	-	lncRNA	chr1	110210643	110252171	GSTM2	+	protein_coding	626	opposite	15_ID	chr1	110235739	110236364	626	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
7968	ENST00000563103.1_1	ENST00000290894.12_4	chr15	45492522	45492830	AC051619.7	-	lncRNA	chr15	45459411	45493373	SHF	-	protein_coding	308	same	2320_ID	chr15	45492523	45492830	308	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
7973	ENST00000563182.1_3	ENST00000433976.7_2	chr16	89293214	89295100	AC009113.2	-	lncRNA	chr16	89284110	89303549	ZNF778	+	protein_coding	1886	opposite	880_ID	chr16	89293215	89295100	1886	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
8088	ENST00000565659.2_2	ENST00000592574.1_6	chr17	40274821	40275370	HSPB9	+	protein_coding	chr17	40271691	40306934	AC099811.2	-	protein_coding	549	opposite	7312_ID	chr17	40274822	40275370	549	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
8100	ENST00000565812.1_3	ENST00000568007.5_3	chr16	48481814	48482309	AC026470.3	-	lncRNA	chr16	48390274	48482313	SIAH1	-	nonsense_mediated_decay	495	same	2157_ID	chr16	48481815	48482309	495	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	7
8102	ENST00000565861.1_1	ENST00000439977.7_3	chr16	56974189	56975254	AC012181.2	+	lncRNA	chr16	56966053	56978776	HERPUD1	+	protein_coding	1065	same	1342_ID	chr16	56974190	56975254	1065	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
8154	ENST00000566960.1_1	ENST00000342907.3_5	chr16	70413359	70433405	AC012184.1	+	lncRNA	chr16	70409879	70473003	ST3GAL2	-	protein_coding	20046	opposite	1343_ID	chr16	70413360	70433405	20046	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	7
8195	ENST00000567829.1_3	ENST00000355803.8_1	chr16	1367891	1372846	AL031714.1	-	lncRNA	chr16	1358880	1377019	UBE2I	+	protein_coding	4955	opposite	4550_ID	chr16	1367892	1372846	4955	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	7
8268	ENST00000569456.1_1	ENST00000328086.12_4	chr16	25249638	25250608	AC008741.1	+	lncRNA	chr16	25247321	25269166	ZKSCAN2	-	protein_coding	970	opposite	795_ID	chr16	25249639	25250608	970	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
8368	ENST00000573877.1_1	ENST00000336868.8_5	chr17	781141	783333	AC087392.2	+	lncRNA	chr17	702549	883016	NXN	-	protein_coding	2192	opposite	2810_ID	chr17	781142	783333	2192	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
8392	ENST00000574912.1_5	ENST00000575677.5_2	chr16	68047338	68049814	DPEP2NB	-	protein_coding	chr16	68028688	68100276	DUS2	+	protein_coding	2476	opposite	6837_ID	chr16	68047339	68049814	2476	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
8409	ENST00000576080.1_3	ENST00000262366.7_1	chr16	4374667	4378341	GLIS2-AS1	-	lncRNA	chr16	4364761	4389598	GLIS2	+	protein_coding	3674	opposite	7133_ID	chr16	4374668	4378341	3674	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
8414	ENST00000576252.1_1	ENST00000336868.8_5	chr17	812871	814452	AC087392.1	+	lncRNA	chr17	702549	883016	NXN	-	protein_coding	1581	opposite	2809_ID	chr17	812872	814452	1581	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
8437	ENST00000577175.1_3	ENST00000509943.2_3	chr17	48290293	48292718	AC015909.4	-	lncRNA	chr17	48277236	48292784	AC015909.1	+	lncRNA	2425	opposite	1501_ID	chr17	48290294	48292718	2425	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
8440	ENST00000577203.1	ENST00000362072.8_5	chr11	113320744	113320810	MIR4301	-	miRNA	chr11	113280326	113346120	DRD2	-	protein_coding	66	same	8496_ID	chr11	113320745	113320810	66	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
8464	ENST00000577325.1_3	ENST00000262395.10_2	chr17	27072586	27074670	AC010761.4	-	lncRNA	chr17	27071028	27077974	TRAF4	+	protein_coding	2084	opposite	1141_ID	chr17	27072587	27074670	2084	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
8521	ENST00000577622.1	ENST00000558850.5_1	chr14	102807305	102807406	AL137229.1	+	miRNA	chr14	102783713	102808701	ZNF839	+	protein_coding	101	same	4947_ID	chr14	102807306	102807406	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
8539	ENST00000577698.1_1	ENST00000674770.1_1	chr17	66242769	66244079	AC005332.1	-	lncRNA	chr17	66202216	66253853	AMZ2	+	protein_coding	1310	opposite	278_ID	chr17	66242770	66244079	1310	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
8679	ENST00000578526.1	ENST00000526355.7_5	chr11	106672074	106672218	AP001282.1	-	miRNA	chr11	106544744	106889202	GUCY1A2	-	protein_coding	144	same	6117_ID	chr11	106672075	106672218	144	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
8707	ENST00000578708.1	ENST00000418532.6_6	chr13	78272146	78272251	MIR3665	-	miRNA	chr13	78271821	78338364	SLAIN1	+	protein_coding	105	opposite	8375_ID	chr13	78272147	78272251	105	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	7
8710	ENST00000578712.1	ENST00000282185.8_3	chr5	81274068	81274138	AC114969.1	+	miRNA	chr5	81267841	81551952	ATG10	+	protein_coding	70	same	3881_ID	chr5	81274069	81274138	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
8789	ENST00000579177.1	ENST00000377067.9_2	chr13	93142415	93142473	MIR548AS	+	miRNA	chr13	92050874	93519490	GPC5	+	protein_coding	58	same	8883_ID	chr13	93142416	93142473	58	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
8831	ENST00000579467.1_3	ENST00000318388.11_2	chr18	9112401	9115875	AP005899.1	-	lncRNA	chr18	9102696	9134339	NDUFV2	+	protein_coding	3474	opposite	6305_ID	chr18	9112402	9115875	3474	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
8833	ENST00000579468.1_3	ENST00000262395.10_2	chr17	27076748	27077097	AC010761.5	-	lncRNA	chr17	27071028	27077974	TRAF4	+	protein_coding	349	opposite	1142_ID	chr17	27076749	27077097	349	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
8865	ENST00000579643.1	ENST00000639822.1_1	chr17	45119190	45119483	RN7SL270P	+	misc_RNA	chr17	45000525	45127298	AC005670.2	+	processed_transcript	293	same	10069_ID	chr17	45119191	45119483	293	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
8878	ENST00000579705.1	ENST00000338895.7_2	chr1	3800627	3800697	AL691523.1	+	miRNA	chr1	3773830	3801984	DFFB	+	protein_coding	70	same	5888_ID	chr1	3800628	3800697	70	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
8887	ENST00000579771.1	ENST00000648086.1_3	chr6	170097343	170097429	AL513547.1	+	miRNA	chr6	169820063	170102143	AL031315.1	-	protein_coding	86	opposite	5718_ID	chr6	170097344	170097429	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
8892	ENST00000579795.6_2	ENST00000481916.6_3	chr17	26833365	26865918	FOXN1	+	protein_coding	chr17	26782769	26941201	AC005726.1	-	nonsense_mediated_decay	32658	opposite	7060_ID	chr17	26833366	26865918	32553	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
8940	ENST00000580047.1	ENST00000639822.1_1	chr17	45050382	45050466	MIR5089	+	miRNA	chr17	45000525	45127298	AC005670.2	+	processed_transcript	84	same	8828_ID	chr17	45050383	45050466	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
8974	ENST00000580269.1	ENST00000285518.11_3	chr8	6602684	6602765	MIR4659B	+	miRNA	chr8	6566162	6619024	AGPAT5	+	protein_coding	81	same	8649_ID	chr8	6602685	6602765	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
8997	ENST00000580372.1_3	ENST00000641323.1_1	chr17	46024167	46025638	AC018521.2	-	lncRNA	chr17	46018913	46026653	PNPO	+	nonsense_mediated_decay	1474	opposite	1628_ID	chr17	46024168	46025638	1471	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	7
9039	ENST00000580600.1	ENST00000382080.6_4	chr8	14372249	14372374	AC021760.1	+	miRNA	chr8	13942353	15095940	SGCZ	-	protein_coding	125	opposite	1805_ID	chr8	14372250	14372374	125	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
9049	ENST00000580645.2_1	ENST00000361524.8_4	chr18	22882089	22882924	AC110603.1	+	lncRNA	chr18	22641887	22932130	ZNF521	-	protein_coding	835	opposite	3790_ID	chr18	22882090	22882924	835	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
9090	ENST00000580848.1	ENST00000481731.5_3	chr20	1469194	1469292	AL109658.1	+	miRNA	chr20	1451385	1472164	SIRPB2	-	nonsense_mediated_decay	98	opposite	4699_ID	chr20	1469195	1469292	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
9094	ENST00000580862.1	ENST00000504352.1_1	chr5	134263728	134263802	MIR4461	+	miRNA	chr5	134240862	134343649	PCBD2	+	nonsense_mediated_decay	74	same	8554_ID	chr5	134263729	134263802	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
9103	ENST00000580913.1	ENST00000639345.1_3	chr4	5925001	5925055	MIR378D1	-	miRNA	chr4	5899099	5991791	C4orf50	-	nonsense_mediated_decay	54	same	8403_ID	chr4	5925002	5925055	54	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
9107	ENST00000580923.1	ENST00000426595.1_1	chr7	55960418	55960689	RN7SL64P	+	misc_RNA	chr7	55954969	56022932	AC092647.5	+	protein_coding	271	same	10335_ID	chr7	55960419	55960689	271	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
9159	ENST00000581232.1_1	ENST00000332968.11_5	chr18	47013708	47018248	AC100778.3	+	lncRNA	chr18	47008521	47018849	RPL17-C18orf32	-	protein_coding	4540	opposite	3410_ID	chr18	47013709	47018248	4540	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	7
9165	ENST00000581277.1	ENST00000368547.4_4	chr10	135185059	135185167	MIR3944	-	miRNA	chr10	135175988	135186858	ECHS1	-	protein_coding	108	same	8442_ID	chr10	135185060	135185167	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
9215	ENST00000581627.1	ENST00000526143.2_4	chr11	118781416	118781496	MIR4492	+	miRNA	chr11	118768454	118796317	BCL9L	-	protein_coding	80	opposite	8575_ID	chr11	118781417	118781496	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
9283	ENST00000581957.1	ENST00000464747.5_5	chr2	178120672	178120738	MIR3128	-	miRNA	chr2	178095035	178257425	NFE2L2	-	protein_coding	66	same	8251_ID	chr2	178120673	178120738	66	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
9288	ENST00000581972.1	ENST00000670079.1_1	chr5	38557603	38557663	MIR3650	-	miRNA	chr5	38556866	38648033	LIFR-AS1	+	lncRNA	60	opposite	8361_ID	chr5	38557604	38557663	60	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	7
9292	ENST00000581996.2_1	ENST00000443185.7_4	chr18	74203607	74205874	AC018413.1	+	lncRNA	chr18	74069636	74207198	ZNF516	-	protein_coding	2290	opposite	1617_ID	chr18	74203608	74205874	2267	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
9357	ENST00000582349.1	ENST00000436953.2_4	chr6	153740155	153740225	AL358134.2	-	miRNA	chr6	153625729	153748289	AL358134.1	-	lncRNA	70	same	5443_ID	chr6	153740156	153740225	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
9393	ENST00000582599.1	ENST00000337107.11_2	chr1	22305443	22305729	RN7SL421P	-	misc_RNA	chr1	22303514	22315847	CELA3B	+	protein_coding	286	opposite	10172_ID	chr1	22305444	22305729	286	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
9407	ENST00000582647.1	ENST00000649150.1_1	chr11	90288941	90289025	MIR4490	-	miRNA	chr11	89984371	90648216	DISC1FP1	+	lncRNA	84	opposite	8574_ID	chr11	90288942	90289025	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
9408	ENST00000582657.1	ENST00000282185.8_3	chr5	81374245	81374541	RN7SL378P	+	misc_RNA	chr5	81267841	81551952	ATG10	+	protein_coding	296	same	10142_ID	chr5	81374246	81374541	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
9427	ENST00000582768.1	ENST00000303127.12_4	chr5	176767674	176767919	RN7SL562P	-	misc_RNA	chr5	176758567	176778669	LMAN2	-	protein_coding	245	same	10272_ID	chr5	176767675	176767919	245	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
9487	ENST00000583078.1	ENST00000373053.7_4	chr10	74480786	74480858	MIR4676	+	miRNA	chr10	74451888	74647452	MCU	+	protein_coding	72	same	8665_ID	chr10	74480787	74480858	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
9517	ENST00000583240.1	ENST00000375587.8_3	chr9	95290265	95290340	MIR4670	-	miRNA	chr9	95088234	95382811	CENPP	+	protein_coding	75	opposite	8659_ID	chr9	95290266	95290340	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
9522	ENST00000583253.1_1	ENST00000319888.10_3	chr18	2561170	2562219	AP005136.3	-	lncRNA	chr18	2537523	2571508	METTL4	-	protein_coding	1049	same	6291_ID	chr18	2561171	2562219	1049	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
9527	ENST00000583284.1	ENST00000366618.8_3	chr1	234442212	234442285	MIR4671	+	miRNA	chr1	234040421	234460257	SLC35F3	+	protein_coding	73	same	8661_ID	chr1	234442213	234442285	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
9529	ENST00000583287.1_1	ENST00000443185.7_4	chr18	74084671	74090230	AC009716.1	+	lncRNA	chr18	74069636	74207198	ZNF516	-	protein_coding	5559	opposite	990_ID	chr18	74084672	74090230	5559	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
9540	ENST00000583390.1	ENST00000376355.7_3	chr13	100295312	100295403	MIR4306	+	miRNA	chr13	100258922	100549388	CLYBL	+	protein_coding	91	same	8499_ID	chr13	100295313	100295403	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
9565	ENST00000583521.1_1	ENST00000403172.8_3	chr17	79890273	79890934	AC145207.4	+	lncRNA	chr17	79890259	79895204	PYCR1	-	protein_coding	661	opposite	4233_ID	chr17	79890274	79890934	661	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
9580	ENST00000583604.1	ENST00000375153.8_2	chr1	19646298	19646554	RN7SL85P	-	misc_RNA	chr1	19638819	19655794	SLC66A1	+	protein_coding	256	opposite	10487_ID	chr1	19646299	19646554	256	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
9640	ENST00000583944.1	ENST00000294507.4_4	chr1	31212002	31212079	MIR4420	-	miRNA	chr1	31205315	31230621	LAPTM5	-	protein_coding	77	same	8527_ID	chr1	31212003	31212079	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
9656	ENST00000584048.1	ENST00000284987.6_4	chr21	28326279	28326362	MIR4759	+	miRNA	chr21	28290240	28339407	ADAMTS5	-	protein_coding	83	opposite	8746_ID	chr21	28326280	28326362	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
9693	ENST00000584226.4_3	ENST00000360242.9_3	chr18	66567017	66569492	AC096708.2	-	lncRNA	chr18	66465316	66722426	CCDC102B	+	protein_coding	2475	opposite	3288_ID	chr18	66567018	66569492	2475	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
9710	ENST00000584304.1	ENST00000621103.4_3	chr5	131701181	131701291	MIR3936	-	miRNA	chr5	131646977	131705608	MIR3936HG	-	lncRNA	110	same	8433_ID	chr5	131701182	131701291	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
9787	ENST00000584753.1_3	ENST00000382713.10_2	chr18	67372213	67392211	AC068254.1	-	lncRNA	chr18	67068123	67516323	DOK6	+	protein_coding	19998	opposite	2399_ID	chr18	67372214	67392211	19998	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
9816	ENST00000584934.1_1	ENST00000648894.1_2	chr6	64280909	64282313	AL135905.1	-	lncRNA	chr6	64231650	64293282	PTP4A1	+	protein_coding	1404	opposite	4877_ID	chr6	64280910	64282313	1404	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
9865	ENST00000585189.1_1	ENST00000481916.6_3	chr17	26900134	26901261	AC005726.3	+	lncRNA	chr17	26782769	26941201	AC005726.1	-	nonsense_mediated_decay	1127	opposite	342_ID	chr17	26900135	26901261	1127	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
9887	ENST00000585286.1	ENST00000393077.3_2	chr10	114393928	114394013	MIR4295	+	miRNA	chr10	114206972	114578503	VTI1A	+	protein_coding	85	same	8491_ID	chr10	114393929	114394013	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
9898	ENST00000585409.2_3	ENST00000621615.1_2	chr19	2321519	2328610	LSM7	-	protein_coding	chr19	2269523	2341170	AC005258.1	+	nonsense_mediated_decay	7092	opposite	7880_ID	chr19	2321520	2328610	7091	*	-	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
9903	ENST00000585527.1_2	ENST00000621615.1_2	chr19	2289782	2292023	LINGO3	-	protein_coding	chr19	2269523	2341170	AC005258.1	+	nonsense_mediated_decay	2241	opposite	7819_ID	chr19	2289783	2292023	2241	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
9919	ENST00000585980.1_3	ENST00000078429.9_2	chr19	3121113	3122126	KF456478.1	-	lncRNA	chr19	3094359	3123997	GNA11	+	protein_coding	1013	opposite	7434_ID	chr19	3121114	3122126	1013	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
9930	ENST00000586356.5_3	ENST00000316737.5_3	chr19	11411452	11435117	AC011472.2	-	lncRNA	chr19	11406823	11437672	TSPAN16	+	protein_coding	23665	opposite	1235_ID	chr19	11411453	11435117	23665	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	7
9975	ENST00000587587.1_3	ENST00000262958.4_2	chr19	3141573	3155173	AC005264.1	-	lncRNA	chr19	3136030	3163747	GNA15	+	protein_coding	13600	opposite	265_ID	chr19	3141574	3155173	13600	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
9979	ENST00000587701.1_3	ENST00000078429.9_2	chr19	3118662	3119302	AC005262.2	-	lncRNA	chr19	3094359	3123997	GNA11	+	protein_coding	640	opposite	264_ID	chr19	3118663	3119302	640	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	7
10030	ENST00000589622.1_1	ENST00000585919.5_1	chr19	10199707	10201053	AC020931.1	-	lncRNA	chr19	10196972	10203928	SHFL	+	retained_intron	1346	opposite	1764_ID	chr19	10199708	10201053	1346	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
10095	ENST00000591630.1_3	ENST00000587340.5_5	chr19	56865861	56877318	AC006116.8	-	lncRNA	chr19	56732680	56879752	ZSCAN5A	-	protein_coding	13561	same	426_ID	chr19	56865862	56877318	11457	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
10123	ENST00000592747.1_3	ENST00000592005.5_1	chr18	44603731	44617651	AC012254.1	-	lncRNA	chr18	44497454	44624853	KATNAL2	+	protein_coding	13920	opposite	1352_ID	chr18	44603732	44617651	13920	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	7
10125	ENST00000592820.1_3	ENST00000589238.5_1	chr18	11993986	11994937	AP001269.1	-	lncRNA	chr18	11981035	12030515	IMPA2	+	protein_coding	951	opposite	6115_ID	chr18	11993987	11994937	951	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
10170	ENST00000594280.1	ENST00000606738.3_4	chr1	48226978	48227290	FLJ00388	-	protein_coding	chr1	48226199	48463057	TRABD2B	-	protein_coding	312	same	7036_ID	chr1	48226979	48227290	312	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
10180	ENST00000594586.1_1	ENST00000394253.7_3	chr6	41759147	41759215	AL365205.3	+	lncRNA	chr6	41757633	41861898	USP49	-	protein_coding	68	opposite	5533_ID	chr6	41759148	41759215	68	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
10187	ENST00000595005.1_3	ENST00000334976.11_5	chr19	50990066	50990895	AC020909.2	-	lncRNA	chr19	50979763	50994128	EMC10	+	protein_coding	829	opposite	1749_ID	chr19	50990067	50990895	829	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
10210	ENST00000595857.5_5	ENST00000599795.5_4	chr19	49564824	49568311	NTF4	-	protein_coding	chr19	49559049	49568333	AC008687.8	-	nonsense_mediated_decay	3989	same	9311_ID	chr19	49564825	49568311	3487	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	7
10265	ENST00000597156.1_1	ENST00000618550.5_5	chr19	7935446	7936182	AC010336.3	+	lncRNA	chr19	7933604	7939275	PRR36	-	protein_coding	736	opposite	1067_ID	chr19	7935447	7936182	736	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	6	7
10285	ENST00000597769.1_1	ENST00000623882.3_7	chr19	18992488	18994185	AC005197.1	+	lncRNA	chr19	18979353	19006905	CERS1	-	protein_coding	1697	opposite	248_ID	chr19	18992489	18994185	1697	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
10294	ENST00000598051.1_1	ENST00000596341.5_1	chr19	58986721	58987130	AC012313.7	-	lncRNA	chr19	58985383	58992595	ZNF446	+	protein_coding	409	opposite	1361_ID	chr19	58986722	58987130	409	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	7
10303	ENST00000598194.1_3	ENST00000334976.11_5	chr19	50983375	50986608	AC020909.3	-	lncRNA	chr19	50979763	50994128	EMC10	+	protein_coding	3233	opposite	1750_ID	chr19	50983376	50986608	3233	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	7
10372	ENST00000600454.1	ENST00000368015.1_3	chr1	161035654	161035943	AL591806.1	+	protein_coding	chr1	161016738	161039760	ARHGAP30	-	protein_coding	289	opposite	5801_ID	chr1	161035655	161035943	289	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
10408	ENST00000601459.1	ENST00000311772.10_2	chr1	28177084	28177255	AL109927.1	-	protein_coding	chr1	28157292	28178187	PPP1R8	+	protein_coding	171	opposite	4713_ID	chr1	28177085	28177255	171	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
10455	ENST00000602441.1_3	ENST00000486740.6_2	chrX	101854584	101914640	AL035427.1	-	lncRNA	chrX	101854464	101969599	ARMCX5-GPRASP2	+	lncRNA	60056	opposite	4604_ID	chrX	101854585	101914640	60056	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
10495	ENST00000602767.2_2	ENST00000651080.1_4	chr1	173831610	173833079	GAS5-AS1	+	lncRNA	chr1	173827696	173836183	GAS5	-	lncRNA	1469	opposite	7105_ID	chr1	173831611	173833079	1469	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
10593	ENST00000604451.1	ENST00000551312.6_6	chr15	25236632	25236900	RP11-701H24.7	+	sense_intronic	chr15	25200180	25245423	AC124312.1	+	nonsense_mediated_decay	268	same	11930_ID	chr15	25236633	25236900	268	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
10651	ENST00000605902.1_3	ENST00000462959.2_1	chr2	61378567	61389231	AC016747.2	-	lncRNA	chr2	61342921	61391960	AC016747.4	+	lncRNA	10673	opposite	1561_ID	chr2	61378568	61389231	10664	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
10653	ENST00000605919.1_1	ENST00000394431.6_3	chr3	64005183	64005601	AC012557.2	+	lncRNA	chr3	63996225	64009686	PSMD6	-	protein_coding	418	opposite	1408_ID	chr3	64005184	64005601	418	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
10661	ENST00000606010.1_1	ENST00000220763.10_2	chr8	98145062	98145607	AP003117.2	-	lncRNA	chr8	97657469	98155729	CPQ	+	protein_coding	545	opposite	6241_ID	chr8	98145063	98145607	545	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
10677	ENST00000606180.1_1	ENST00000464747.5_5	chr2	178165327	178166734	AC019080.3	+	lncRNA	chr2	178095035	178257425	NFE2L2	-	protein_coding	1407	opposite	1684_ID	chr2	178165328	178166734	1407	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
10681	ENST00000606200.1_1	ENST00000464747.5_5	chr2	178171100	178175300	AC019080.4	+	lncRNA	chr2	178095035	178257425	NFE2L2	-	protein_coding	4200	opposite	1686_ID	chr2	178171101	178175300	4200	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
10702	ENST00000606393.1_1	ENST00000606214.5_4	chr6	13290249	13290722	AL008729.2	-	lncRNA	chr6	13266773	13327144	TBC1D7	-	protein_coding	473	same	4433_ID	chr6	13290250	13290722	473	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
10721	ENST00000606572.1_1	ENST00000640035.1_1	chr8	184346	184887	AC004908.1	-	lncRNA	chr8	182216	214703	ZNF596	+	protein_coding	541	opposite	194_ID	chr8	184347	184887	541	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
10726	ENST00000606617.1_1	ENST00000474295.5_1	chr1	26158403	26158625	AL020996.3	-	lncRNA	chr1	26146419	26159433	MTFR1L	+	protein_coding	222	opposite	4440_ID	chr1	26158404	26158625	222	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	7
10746	ENST00000606818.1_1	ENST00000409228.5_3	chr2	197015986	197019605	AC114760.2	+	lncRNA	chr2	197002170	197041227	STK17B	-	protein_coding	3619	opposite	3871_ID	chr2	197015987	197019605	3619	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
10766	ENST00000607017.1_1	ENST00000522938.5_3	chr8	80944958	80945535	AC009686.2	-	lncRNA	chr8	80831094	80993010	AC036214.3	-	nonsense_mediated_decay	577	same	987_ID	chr8	80944959	80945535	577	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
10799	ENST00000607314.1	ENST00000651335.1_3	chr8	32623642	32625477	RP11-1002K11.1	+	lincRNA	chr8	31498174	32713184	NRG1	+	protein_coding	1835	same	11876_ID	chr8	32623643	32625477	1835	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
10816	ENST00000607459.1_1	ENST00000378251.3_4	chr1	3701571	3702102	AL365330.1	+	lncRNA	chr1	3695122	3713062	LRRC47	-	protein_coding	531	opposite	5542_ID	chr1	3701572	3702102	531	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
10835	ENST00000607600.1_1	ENST00000372067.8_3	chr6	43738165	43738353	AL136131.3	-	lncRNA	chr6	43737949	43754224	VEGFA	+	protein_coding	188	opposite	4890_ID	chr6	43738166	43738353	188	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	7
10856	ENST00000607832.1_3	ENST00000320954.11_4	chr3	33185595	33189213	AC112211.1	-	lncRNA	chr3	33155505	33189265	CRTAP	+	protein_coding	3618	opposite	3812_ID	chr3	33185596	33189213	3618	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
10881	ENST00000608017.1_1	ENST00000636707.1_3	chr10	104242795	104243316	AL121928.1	+	lncRNA	chr10	104221637	104262466	ACTR1A	-	nonsense_mediated_decay	521	opposite	4775_ID	chr10	104242796	104243316	521	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
10893	ENST00000608140.1_1	ENST00000640418.1_3	chr2	86131401	86131850	AC012511.1	+	lncRNA	chr2	86066310	86132322	ST3GAL5	-	protein_coding	449	opposite	1399_ID	chr2	86131402	86131850	449	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
10903	ENST00000608259.1_1	ENST00000373053.7_4	chr10	74526317	74526810	AC016542.1	+	lncRNA	chr10	74451888	74647452	MCU	+	protein_coding	493	same	1531_ID	chr10	74526318	74526810	493	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
10910	ENST00000608335.1_1	ENST00000638053.1_2	chr10	38426264	38433327	AL117339.3	+	lncRNA	chr10	38383261	38439221	ZNF37A	+	protein_coding	7063	same	4728_ID	chr10	38426265	38433327	7063	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
10931	ENST00000608672.1_1	ENST00000648843.3_4	chr10	63444649	63445146	AL451049.1	-	lncRNA	chr10	63422686	63526524	CABCOCO1	+	protein_coding	497	opposite	5667_ID	chr10	63444650	63445146	497	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
10939	ENST00000608729.1_1	ENST00000609683.5_3	chr10	31120756	31122316	AL359532.1	-	lncRNA	chr10	31109135	31212317	ZNF438	-	nonsense_mediated_decay	1560	same	5488_ID	chr10	31120757	31122316	1560	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
10967	ENST00000609090.1_1	ENST00000640035.1_1	chr8	183118	183692	AC004908.2	+	lncRNA	chr8	182216	214703	ZNF596	+	protein_coding	574	same	195_ID	chr8	183119	183692	574	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
10975	ENST00000609166.1_1	ENST00000392328.6_2	chr2	191318817	191319247	AC093388.1	-	lncRNA	chr2	191273080	191367040	MFSD6	+	protein_coding	430	opposite	3200_ID	chr2	191318818	191319247	430	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
10989	ENST00000609315.1_1	ENST00000372890.6_5	chr9	131078615	131079188	AL359091.3	+	lncRNA	chr9	131067437	131084726	TRUB2	-	protein_coding	573	opposite	5470_ID	chr9	131078616	131079188	573	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
11001	ENST00000609428.1_1	ENST00000458073.5_1	chr22	39132614	39132797	AL021707.8	-	lncRNA	chr22	39122310	39134304	GTPBP1	+	protein_coding	183	opposite	4458_ID	chr22	39132615	39132797	183	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
11012	ENST00000609548.1_2	ENST00000617421.4_3	chr4	1161565	1161962	AC092535.5	+	lncRNA	chr4	1160724	1202750	SPON2	-	protein_coding	397	opposite	3100_ID	chr4	1161566	1161962	397	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
11030	ENST00000609744.1_1	ENST00000253193.9_2	chr19	33698034	33698545	AC008738.7	+	lncRNA	chr19	33685235	33699770	LRP3	+	protein_coding	511	same	794_ID	chr19	33698035	33698545	511	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
11064	ENST00000610044.1_3	ENST00000392122.3_3	chr1	167426978	167429128	AL359962.2	-	lncRNA	chr1	167399876	167487847	CD247	-	protein_coding	2150	same	5510_ID	chr1	167426979	167429128	2150	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
11083	ENST00000610217.1_1	ENST00000347635.9_2	chr22	45574870	45575191	AL008718.3	+	lncRNA	chr22	45559805	45583898	NUP50	+	protein_coding	321	same	4430_ID	chr22	45574871	45575191	321	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
11086	ENST00000610248.1_1	ENST00000640035.1_1	chr8	187044	187669	AC004908.3	+	lncRNA	chr8	182216	214703	ZNF596	+	protein_coding	625	same	196_ID	chr8	187045	187669	625	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
11153	ENST00000611726.1_1	ENST00000564489.1_3	chr16	75606082	75606583	AC025287.3	-	lncRNA	chr16	75575296	75642343	AC025287.1	-	lncRNA	501	same	2076_ID	chr16	75606083	75606583	501	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
11166	ENST00000612252.1_1	ENST00000345097.8_5	chr14	89623086	89623918	AL138478.1	+	lncRNA	chr14	89622515	90085474	FOXN3	-	protein_coding	832	opposite	4962_ID	chr14	89623087	89623918	832	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
11327	ENST00000615979.1_1	ENST00000563137.7_5	chr16	49880928	49881543	AC027348.1	-	lncRNA	chr16	49521434	49890023	ZNF423	-	protein_coding	30948	same	2209_ID	chr16	49880929	49881543	615	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
11348	ENST00000616499.1_1	ENST00000398545.5_4	chr18	47782405	47782831	AC090246.1	-	lncRNA	chr18	47753562	47792865	CFAP53	-	protein_coding	426	same	2887_ID	chr18	47782406	47782831	426	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
11423	ENST00000618632.1_3	ENST00000612708.4_1	chr5	36636120	36649449	AC008957.2	-	lncRNA	chr5	36606456	36688434	SLC1A3	+	protein_coding	13329	opposite	837_ID	chr5	36636121	36649449	13329	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
11445	ENST00000619113.1_1	ENST00000654297.1_3	chr2	307682	309424	AC079779.4	+	lncRNA	chr2	290940	314328	AC079779.3	-	lncRNA	1742	opposite	2676_ID	chr2	307683	309424	1742	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	7
11457	ENST00000619343.1_3	ENST00000497424.5_1	chr20	3901925	3904047	AL031670.1	-	lncRNA	chr20	3869485	3907605	PANK2	+	protein_coding	2122	opposite	4543_ID	chr20	3901926	3904047	2122	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	7	7
11462	ENST00000619492.1_1	ENST00000537971.5_1	chr12	3280822	3283222	AC005912.2	+	lncRNA	chr12	3186520	3395730	TSPAN9	+	protein_coding	2400	same	384_ID	chr12	3280823	3283222	2400	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
11526	ENST00000620563.1_1	ENST00000360242.9_3	chr18	66575284	66575836	AC096708.3	+	lncRNA	chr18	66465316	66722426	CCDC102B	+	protein_coding	552	same	3289_ID	chr18	66575285	66575836	552	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
11561	ENST00000621423.1_1	ENST00000371007.6_4	chr1	67587287	67589639	AL133320.2	-	lncRNA	chr1	67557847	67697535	C1orf141	-	protein_coding	2352	same	4841_ID	chr1	67587288	67589639	2352	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
11590	ENST00000621911.1_2	ENST00000564489.1_3	chr16	75590289	75590957	AC025287.2	+	lncRNA	chr16	75575296	75642343	AC025287.1	-	lncRNA	668	opposite	2075_ID	chr16	75590290	75590957	668	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
11649	ENST00000623441.1_2	ENST00000639059.1_2	chr15	22382381	22383507	AC135068.4	+	protein_coding	chr15	22303183	22383808	AC134980.2	+	protein_coding	1126	same	4140_ID	chr15	22382382	22383507	1126	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	7	7
11654	ENST00000623570.1_2	ENST00000614596.2_3	chr22	18871014	18872195	AC008103.1	-	lncRNA	chr22	18861055	18881920	FAM230F	-	lncRNA	1181	same	698_ID	chr22	18871015	18872195	1181	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
11704	ENST00000624818.1_1	ENST00000262735.9_1	chr22	46559201	46561246	FP325332.1	+	lncRNA	chr22	46546498	46639653	PPARA	+	protein_coding	2045	same	7072_ID	chr22	46559202	46561246	2045	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
11711	ENST00000624891.1_1	ENST00000464747.5_5	chr2	178182442	178183199	AC019080.5	-	lncRNA	chr2	178095035	178257425	NFE2L2	-	protein_coding	757	same	1687_ID	chr2	178182443	178183199	757	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
11730	ENST00000625474.1_1	ENST00000366930.9_6	chr1	218615967	218617338	TGFB2-OT1	+	lncRNA	chr1	218518677	218617961	TGFB2	+	protein_coding	1371	same	12669_ID	chr1	218615968	218617338	1371	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	7	7
11732	ENST00000625815.2_2	ENST00000393004.6_3	chr6	76067079	76109016	AL445465.1	+	lncRNA	chr6	76001574	76203345	FILIP1	-	protein_coding	42087	opposite	5626_ID	chr6	76067080	76109016	41937	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
11741	ENST00000626270.2_6	ENST00000367879.9_2	chr1	165858961	165870232	AL358115.1	-	lncRNA	chr1	165796850	165880855	UCK2	+	protein_coding	11271	opposite	5441_ID	chr1	165858962	165870232	11271	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
11761	ENST00000628401.1_1	ENST00000351217.10_3	chr15	73859352	73861635	NPTN-IT1	-	lncRNA	chr15	73852354	73926475	NPTN	-	protein_coding	2283	same	9294_ID	chr15	73859353	73861635	2283	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
11787	ENST00000630034.1_1	ENST00000636155.1_1	chr10	95522209	95531748	AL157396.1	+	lncRNA	chr10	95517784	95565891	LGI1	+	protein_coding	9539	same	5059_ID	chr10	95522210	95531748	9539	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
11827	ENST00000634535.1_1	ENST00000377067.9_2	chr13	92646770	92648776	AL162456.1	+	lncRNA	chr13	92050874	93519490	GPC5	+	protein_coding	2006	same	5201_ID	chr13	92646771	92648776	2006	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
11830	ENST00000634783.1_1	ENST00000591680.6_5	chr17	42563520	42564183	AC103703.1	-	lncRNA	chr17	42472648	42580774	GPATCH8	-	protein_coding	663	same	3459_ID	chr17	42563521	42564183	663	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
11858	ENST00000636224.2_4	ENST00000660576.1_1	chr3	181252400	181418399	AC125613.1	-	lncRNA	chr3	180707557	181460672	SOX2-OT	+	lncRNA	166435	opposite	4019_ID	chr3	181252401	181418399	165999	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
11877	ENST00000637497.1_1	ENST00000397861.7_4	chr17	54881201	54881630	AC106858.1	-	lncRNA	chr17	54869273	54911281	C17orf67	-	protein_coding	429	same	3660_ID	chr17	54881202	54881630	429	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
11981	ENST00000642657.1_3	ENST00000642855.1_3	chr1	192486319	192507232	AL136987.1	+	lncRNA	chr1	192356761	192598215	AL390957.1	-	lncRNA	46975	opposite	4930_ID	chr1	192486320	192507232	20913	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
12000	ENST00000645232.1_1	ENST00000319516.8_4	chr6	10404734	10408161	TFAP2A-AS2	+	lncRNA	chr6	10398104	10419871	TFAP2A	-	protein_coding	3427	opposite	12665_ID	chr6	10404735	10408161	3427	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
12006	ENST00000646820.1_1	ENST00000506163.5_2	chr5	70227070	70228667	AC139834.1	-	lncRNA	chr5	70220921	70248867	SMN1	+	protein_coding	1597	opposite	4213_ID	chr5	70227071	70228667	1597	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12051	ENST00000648243.1_4	ENST00000546977.5_1	chr12	58959741	59175501	LINC02388	-	lncRNA	chr12	58937906	59206842	AC020637.1	+	lncRNA	215788	opposite	7768_ID	chr12	58959742	59175501	215760	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12091	ENST00000648686.1_3	ENST00000371626.9_3	chr1	52485824	52499022	AL445685.3	-	nonsense_mediated_decay	chr1	52485802	52520863	TXNDC12	-	protein_coding	13198	same	5635_ID	chr1	52485825	52499022	13198	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	7
12111	ENST00000649026.1_1	ENST00000429345.5_3	chr6	6450588	6507676	AL162719.1	+	lncRNA	chr6	6346697	6622977	LY86-AS1	-	lncRNA	57088	opposite	5218_ID	chr6	6450589	6507676	57088	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
12114	ENST00000649053.1_3	ENST00000349777.5_1	chr15	42789591	42824279	AC018362.1	-	lncRNA	chr15	42787503	42825257	SNAP23	+	protein_coding	35447	opposite	1613_ID	chr15	42789592	42824279	34688	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	7
12122	ENST00000649176.1_1	ENST00000361524.8_4	chr18	22776626	22798205	AC105114.2	+	lncRNA	chr18	22641887	22932130	ZNF521	-	protein_coding	21579	opposite	3596_ID	chr18	22776627	22798205	21579	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
12160	ENST00000650086.1_3	ENST00000357103.5_2	chr12	1850362	1856265	AC005343.4	-	lncRNA	chr12	1800235	1897840	ADIPOR2	+	protein_coding	5903	opposite	282_ID	chr12	1850363	1856265	5903	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12169	ENST00000650266.1_3	ENST00000269439.12_2	chr18	43989159	43990608	AC018931.1	-	lncRNA	chr18	43913980	44043103	RNF165	+	protein_coding	1449	opposite	1678_ID	chr18	43989160	43990608	1449	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12191	ENST00000650715.1_4	ENST00000645606.1_3	chr12	122692214	122712003	DIABLO	-	protein_coding	chr12	122692208	122712081	AC048338.2	-	protein_coding	19794	same	6798_ID	chr12	122692215	122712003	19789	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	7
12207	ENST00000651064.1_3	ENST00000301244.12_3	chr19	38780756	38783063	AC011479.4	-	lncRNA	chr19	38755212	38783255	SPINT2	+	protein_coding	2307	opposite	1249_ID	chr19	38780757	38783063	2307	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	7
12211	ENST00000651076.1_3	ENST00000658049.1_1	chr2	221676337	221718176	AC093843.2	-	lncRNA	chr2	221641537	221720593	AC093843.1	+	lncRNA	41839	opposite	3251_ID	chr2	221676338	221718176	41839	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	7
12222	ENST00000651255.1_4	ENST00000649552.1_1	chr11	59967742	60010610	MS4A4E	-	protein_coding	chr11	59953174	60085417	MS4A4A	+	protein_coding	42868	opposite	9172_ID	chr11	59967743	60010610	42868	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
12235	ENST00000651636.1_1	ENST00000587340.5_5	chr19	56826630	56876685	AC006116.7	+	lncRNA	chr19	56732680	56879752	ZSCAN5A	-	protein_coding	50614	opposite	425_ID	chr19	56826631	56876685	50055	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
12280	ENST00000652530.1_1	ENST00000338145.7_4	chr4	103735408	103741038	AC018797.3	+	lncRNA	chr4	103718408	103790032	UBE2D3	-	protein_coding	5630	opposite	1665_ID	chr4	103735409	103741038	5630	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
12285	ENST00000652575.1_2	ENST00000651335.1_3	chr8	32504720	32504909	AC083977.1	+	protein_coding	chr8	31498174	32713184	NRG1	+	protein_coding	189	same	2727_ID	chr8	32504721	32504909	189	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
12294	ENST00000652791.1_1	ENST00000658738.1_3	chr2	45396754	45438812	AC009236.2	+	lncRNA	chr2	45391956	45550528	LINC01121	-	lncRNA	42058	opposite	927_ID	chr2	45396755	45438812	42058	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
12327	ENST00000653602.1_1	ENST00000424848.3_4	chr7	92282668	92296397	AC000065.1	+	lncRNA	chr7	92234234	92465887	CDK6	-	protein_coding	19178	opposite	18_ID	chr7	92282669	92296397	13729	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
12337	ENST00000653887.1_1	ENST00000642963.1_2	chr7	130538490	130615439	LINC00513	+	lncRNA	chr7	130476022	130792687	AC016831.6	-	lncRNA	76963	opposite	7558_ID	chr7	130538491	130615439	76949	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	7
12399	ENST00000655381.1_2	ENST00000674596.1_1	chr17	19266072	19273549	AC124066.1	+	lncRNA	chr17	19239864	19281220	B9D1	-	protein_coding	7477	opposite	3998_ID	chr17	19266073	19273549	7477	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
12429	ENST00000656007.1_3	ENST00000377067.9_2	chr13	92992046	93031789	GPC5-AS2	-	lncRNA	chr13	92050874	93519490	GPC5	+	protein_coding	39743	opposite	7150_ID	chr13	92992047	93031789	39743	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
12453	ENST00000656621.1_3	ENST00000553947.1_2	chr14	95065796	95074176	AL049839.3	+	lncRNA	chr14	95058394	95090983	AL049839.2	+	nonsense_mediated_decay	8380	same	4643_ID	chr14	95065797	95074176	8380	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
12454	ENST00000656657.1_3	ENST00000646805.1_1	chr18	30133995	30146597	AC009835.1	-	lncRNA	chr18	30050250	30325530	AC025887.2	+	lncRNA	40493	opposite	1000_ID	chr18	30133996	30146597	12602	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
12463	ENST00000656776.1_2	ENST00000651335.1_3	chr8	31883725	31997011	NRG1-IT1	+	lncRNA	chr8	31498174	32713184	NRG1	+	protein_coding	113286	same	9303_ID	chr8	31883726	31997011	113286	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12476	ENST00000657064.1_1	ENST00000424696.6_3	chr1	209704580	209709696	AL023754.2	+	lncRNA	chr1	209701799	209741018	AL023754.1	-	lncRNA	5116	opposite	4493_ID	chr1	209704581	209709696	5116	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	7
12505	ENST00000657615.1_2	ENST00000651335.1_3	chr8	32298219	32306319	NRG1-IT3	+	lncRNA	chr8	31498174	32713184	NRG1	+	protein_coding	8100	same	9304_ID	chr8	32298220	32306319	8100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12506	ENST00000657619.1_1	ENST00000304523.10_5	chr4	16600340	16606216	AC104656.1	+	lncRNA	chr4	16503163	16900268	LDB2	-	protein_coding	5876	opposite	3563_ID	chr4	16600341	16606216	5876	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
12507	ENST00000657664.1_1	ENST00000662602.1_1	chr3	115137708	115157397	AC026341.3	+	lncRNA	chr3	114866487	115283236	AC026341.1	+	lncRNA	19689	same	2132_ID	chr3	115137709	115157397	19689	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
12517	ENST00000657841.1_1	ENST00000634433.1_4	chr17	41277567	41305666	NBR2	+	lncRNA	chr17	41245029	41322262	BRCA1	-	protein_coding	28121	opposite	9236_ID	chr17	41277568	41305666	28099	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12526	ENST00000657970.1_3	ENST00000637185.1_2	chr9	109377358	109378264	AL512649.2	-	lncRNA	chr9	108755590	109464943	LINC01505	+	lncRNA	906	opposite	5693_ID	chr9	109377359	109378264	906	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
12534	ENST00000658131.1_4	ENST00000651335.1_3	chr8	31684753	31698225	AC068931.1	-	lncRNA	chr8	31498174	32713184	NRG1	+	protein_coding	13472	opposite	2458_ID	chr8	31684754	31698225	13472	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12564	ENST00000658603.1_1	ENST00000657392.1_3	chr11	29615872	29653056	LINC02546	+	lncRNA	chr11	29357425	30010875	LINC02755	-	lncRNA	37190	opposite	7784_ID	chr11	29615873	29653056	37184	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
12583	ENST00000658903.1_3	ENST00000674864.1_1	chr8	63570901	63602692	AC090577.1	-	lncRNA	chr8	63161412	63926559	NKAIN3	+	protein_coding	31791	opposite	2910_ID	chr8	63570902	63602692	31791	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
12588	ENST00000658962.1_3	ENST00000392491.2	chr6	122883316	122942159	AL512283.2	-	lncRNA	chr6	122793075	123047035	PKIB	+	protein_coding	58843	opposite	5677_ID	chr6	122883317	122942159	58843	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
12627	ENST00000659731.1_1	ENST00000651361.1_3	chr19	31658418	31716049	LINC01791	+	lncRNA	chr19	31640884	31840148	TSHZ3	-	processed_transcript	57687	opposite	7677_ID	chr19	31658419	31716049	57631	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	7
12645	ENST00000660165.1_3	ENST00000345127.9_5	chr12	42879154	42892781	AC079600.3	-	lncRNA	chr12	42850558	42983548	PRICKLE1	-	protein_coding	13627	same	2669_ID	chr12	42879155	42892781	13627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12660	ENST00000660512.1_1	ENST00000392122.3_3	chr1	167424431	167427883	AL359962.3	+	lncRNA	chr1	167399876	167487847	CD247	-	protein_coding	3452	opposite	5511_ID	chr1	167424432	167427883	3452	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12664	ENST00000660704.1_3	ENST00000650445.2_2	chr8	137249478	137307475	AC023781.1	-	lncRNA	chr8	137210488	137773015	LINC02055	+	lncRNA	57997	opposite	1964_ID	chr8	137249479	137307475	57997	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12680	ENST00000660950.1_3	ENST00000392491.2	chr6	123033031	123039959	AL512283.3	-	lncRNA	chr6	122793075	123047035	PKIB	+	protein_coding	6928	opposite	5678_ID	chr6	123033032	123039959	6928	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	6	7
12688	ENST00000661102.1_4	ENST00000621615.1_2	chr19	2315160	2316874	AC005258.2	-	lncRNA	chr19	2269523	2341170	AC005258.1	+	nonsense_mediated_decay	1714	opposite	263_ID	chr19	2315161	2316874	1714	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12711	ENST00000661747.1_3	ENST00000424848.3_4	chr7	92267511	92271630	AC000065.2	-	lncRNA	chr7	92234234	92465887	CDK6	-	protein_coding	4119	same	19_ID	chr7	92267512	92271630	4119	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
12747	ENST00000662499.1_3	ENST00000377067.9_2	chr13	93262898	93329978	AL356737.2	-	lncRNA	chr13	92050874	93519490	GPC5	+	protein_coding	67080	opposite	5392_ID	chr13	93262899	93329978	67080	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
12761	ENST00000662787.1_3	ENST00000261783.4_2	chr14	68094015	68106392	AL049779.4	-	lncRNA	chr14	68086636	68118425	ARG2	+	protein_coding	12377	opposite	4634_ID	chr14	68094016	68106392	12377	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
12763	ENST00000662855.1_1	ENST00000524236.2_2	chr8	112711747	112712505	AC022360.1	+	lncRNA	chr8	112428743	112769055	LINC02237	+	lncRNA	758	same	1848_ID	chr8	112711748	112712505	758	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
12764	ENST00000662866.1_1	ENST00000296741.7_4	chr4	185021634	185027191	AC107222.2	+	lncRNA	chr4	185009858	185139026	ENPP6	-	protein_coding	5557	opposite	3686_ID	chr4	185021635	185027191	5557	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
12768	ENST00000662923.1_1	ENST00000345097.8_5	chr14	89815720	89832425	AL357093.2	+	lncRNA	chr14	89622515	90085474	FOXN3	-	protein_coding	16705	opposite	5418_ID	chr14	89815721	89832425	16705	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
12775	ENST00000663064.1_1	ENST00000606080.2_4	chr6	116355063	116367916	AL357141.1	+	lncRNA	chr6	116252311	116382054	FRK	-	protein_coding	12853	opposite	5422_ID	chr6	116355064	116367916	12853	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12780	ENST00000663183.1_1	ENST00000557481.6_3	chr15	94378718	94422051	LINC02207	+	lncRNA	chr15	94261770	94443828	LINC01579	-	lncRNA	43333	opposite	7747_ID	chr15	94378719	94422051	43333	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
12798	ENST00000663555.1_3	ENST00000374791.7_1	chr11	131492344	131533470	NTM-AS1	-	lncRNA	chr11	131240372	132206716	NTM	+	protein_coding	41133	opposite	9312_ID	chr11	131492345	131533470	41126	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12834	ENST00000664278.1_3	ENST00000662602.1_1	chr3	115132322	115205296	AC026341.2	-	lncRNA	chr3	114866487	115283236	AC026341.1	+	lncRNA	72974	opposite	2131_ID	chr3	115132323	115205296	72974	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
12888	ENST00000665298.1_1	ENST00000265395.7_4	chr7	27657092	27667115	AC007130.1	+	lncRNA	chr7	27565060	27702502	HIBADH	-	protein_coding	10023	opposite	510_ID	chr7	27657093	27667115	10023	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
12891	ENST00000665352.1_1	ENST00000640418.1_3	chr2	86116273	86118259	ST3GAL5-AS1	+	lncRNA	chr2	86066310	86132322	ST3GAL5	-	protein_coding	1986	opposite	12557_ID	chr2	86116274	86118259	1986	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
12965	ENST00000667072.1_1	ENST00000405269.5_7	chr2	40761945	40772921	AC007877.1	+	lncRNA	chr2	40342389	40838193	SLC8A1	-	protein_coding	10976	opposite	652_ID	chr2	40761946	40772921	10976	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12990	ENST00000667675.1_1	ENST00000340630.9_4	chr22	37162521	37165066	Z80897.1	+	lncRNA	chr22	37154245	37172197	IFT27	-	protein_coding	2545	opposite	12937_ID	chr22	37162522	37165066	2545	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
13049	ENST00000668970.1_1	ENST00000657392.1_3	chr11	29504353	29574408	AC110058.1	+	lncRNA	chr11	29357425	30010875	LINC02755	-	lncRNA	70055	opposite	3783_ID	chr11	29504354	29574408	70055	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
13114	ENST00000670400.1_3	ENST00000376355.7_3	chr13	100488066	100493504	AL137139.3	-	lncRNA	chr13	100258922	100549388	CLYBL	+	protein_coding	5438	opposite	4941_ID	chr13	100488067	100493504	5438	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
13123	ENST00000670609.1_3	ENST00000376355.7_3	chr13	100378498	100381225	CLYBL-AS1	-	lncRNA	chr13	100258922	100549388	CLYBL	+	protein_coding	2727	opposite	6671_ID	chr13	100378499	100381225	2727	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
13181	ENST00000672226.1_1	ENST00000621615.1_2	chr19	2293171	2295780	AC104530.1	+	lncRNA	chr19	2269523	2341170	AC005258.1	+	nonsense_mediated_decay	2609	same	3545_ID	chr19	2293172	2295780	2609	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
13190	ENST00000673910.1_2	ENST00000380259.7_5	chr11	5535622	5539661	UBQLNL	-	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	4039	same	12843_ID	chr11	5535623	5539661	4039	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
13195	ENST00000674115.1_1	ENST00000237264.9_3	chr6	134274441	134301226	AL035699.1	+	protein_coding	chr6	134274361	134311570	TBPL1	+	protein_coding	26785	same	4617_ID	chr6	134274442	134301226	26785	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	7
23810	ENST00000283254.12_5	ENST00000629817.2_5	chr2	165944035	166060560	SCN3A	-	protein_coding	chr2	165848666	166064771	AC019197.1	+	lncRNA	116525	opposite	12011_ID	chr2	165944036	166060560	116525	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	3	7
24510	ENST00000285298.9_3	ENST00000446692.5_3	chr7	56019569	56024193	MRPS17	+	protein_coding	chr7	56019485	56052570	NIPSNAP2	+	protein_coding	4624	same	9170_ID	chr7	56019570	56024193	4624	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	7
32110	ENST00000300778.4_4	ENST00000380259.7_5	chr11	5443340	5444436	OR51Q1	+	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	1096	opposite	9431_ID	chr11	5443341	5444436	1096	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
48710	ENST00000322641.5_2	ENST00000380259.7_5	chr11	5509914	5510979	OR52D1	+	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	1065	opposite	9438_ID	chr11	5509915	5510979	1065	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
535	ENST00000328795.5_2	ENST00000628444.1_3	chr15	22382472	22383423	OR4N4	+	protein_coding	chr15	22303183	22383815	LINC02203	+	protein_coding	951	same	9395_ID	chr15	22382473	22383423	951	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	7	7
70610	ENST00000357771.5_4	ENST00000454994.3_5	chr1	39339740	39347259	GJA9	-	protein_coding	chr1	39330174	39347289	AL139260.3	-	nonsense_mediated_decay	7519	same	7121_ID	chr1	39339741	39347259	7519	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	7
82310	ENST00000362347.1	ENST00000341398.6_3	chr11	119527020	119527126	RNU6-1123P	+	snRNA	chr11	119508807	119599263	NECTIN1	-	protein_coding	106	opposite	10841_ID	chr11	119527021	119527126	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
105110	ENST00000363693.1	ENST00000604011.5_5	chr2	86742326	86742431	RNU6-640P	-	snRNA	chr2	86732790	86948245	RNF103-CHMP3	-	protein_coding	105	same	11399_ID	chr2	86742327	86742431	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
108110	ENST00000363861.1	ENST00000526755.5_1	chr8	42928616	42928761	RNU1-124P	+	snRNA	chr8	42911450	42940931	FNTA	+	nonsense_mediated_decay	145	same	10561_ID	chr8	42928617	42928761	145	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
15671	ENST00000377547.3_3	ENST00000650759.1_1	chr9	45001906	45003117	AL391987.4	-	lncRNA	chr9	44992765	45233072	FAM27C	+	lncRNA	1211	opposite	5595_ID	chr9	45001907	45003117	1211	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
16001	ENST00000380211.1_2	ENST00000380259.7_5	chr11	5461799	5462744	OR51I1	-	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	945	same	9418_ID	chr11	5461800	5462744	945	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
16041	ENST00000380219.1_2	ENST00000380259.7_5	chr11	5372737	5373676	OR51B6	+	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	939	opposite	9410_ID	chr11	5372738	5373676	939	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
16081	ENST00000380224.2_4	ENST00000380259.7_5	chr11	5322243	5323176	OR51B4	-	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	933	same	9406_ID	chr11	5322244	5323176	933	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
16251	ENST00000381361.4_1	ENST00000356578.8_5	chr11	2161746	2169896	IGF2-AS	+	lncRNA	chr11	2153767	2182439	INS-IGF2	-	nonsense_mediated_decay	8166	opposite	7337_ID	chr11	2161747	2169896	8150	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	7
18261	ENST00000384344.1	ENST00000360242.9_3	chr18	66526170	66526277	RNU6-39P	+	snRNA	chr18	66465316	66722426	CCDC102B	+	protein_coding	107	same	11208_ID	chr18	66526171	66526277	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
23741	ENST00000390913.1	ENST00000513386.1_3	chr5	60959971	60960066	RNU6-913P	-	snRNA	chr5	60958976	60994259	AC026746.1	-	lncRNA	95	same	11607_ID	chr5	60959972	60960066	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
27321	ENST00000408319.1	ENST00000548312.5_3	chr12	111070408	111070498	AC144522.1	+	miRNA	chr12	111065645	111127222	HVCN1	-	protein_coding	90	opposite	4227_ID	chr12	111070409	111070498	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
28891	ENST00000408674.1	ENST00000231228.3_3	chr5	158745049	158745175	RNU4ATAC2P	+	snRNA	chr5	158741787	158757495	IL12B	-	protein_coding	126	opposite	10730_ID	chr5	158745050	158745175	126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
33371	ENST00000412669.1_4	ENST00000449528.5_3	chr7	90219936	90226667	AC002456.1	-	lncRNA	chr7	90095737	90419943	CDK14	+	protein_coding	6735	opposite	50_ID	chr7	90219937	90226667	6731	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
36831	ENST00000421848.1_1	ENST00000650759.1_1	chr9	45004878	45023236	AL391987.3	+	lncRNA	chr9	44992765	45233072	FAM27C	+	lncRNA	18358	same	5594_ID	chr9	45004879	45023236	18358	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
41111	ENST00000434207.1_1	ENST00000604534.5_2	chr1	95585702	95604110	AC092802.3	+	lncRNA	chr1	95583478	95710511	TLCD4-RWDD3	+	protein_coding	18408	same	3153_ID	chr1	95585703	95604110	18408	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
42891	ENST00000439077.1_1	ENST00000604011.5_5	chr2	86789197	86844564	AC015971.1	+	lncRNA	chr2	86732790	86948245	RNF103-CHMP3	-	protein_coding	56697	opposite	1511_ID	chr2	86789198	86844564	55367	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
43631	ENST00000441025.2_4	ENST00000650759.1_1	chr9	44997999	44998719	AL391987.1	-	protein_coding	chr9	44992765	45233072	FAM27C	+	lncRNA	720	opposite	5591_ID	chr9	44998000	44998719	720	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
43661	ENST00000441101.1_3	ENST00000650759.1_1	chr9	45034956	45047145	FAM242E	-	lncRNA	chr9	44992765	45233072	FAM27C	+	lncRNA	12218	opposite	6980_ID	chr9	45034957	45047145	12189	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
46571	ENST00000449730.1_3	ENST00000665764.1_1	chr9	120602599	120659534	AL354754.1	-	lncRNA	chr9	120466680	120834592	AL160272.2	+	nonsense_mediated_decay	56935	opposite	5281_ID	chr9	120602600	120659534	56935	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	7
48631	ENST00000455390.1_1	ENST00000507747.1_4	chr6	167317185	167318323	RPS6KA2-AS1	+	lncRNA	chr6	167271581	167369612	AL159163.1	-	protein_coding	1138	opposite	11960_ID	chr6	167317186	167318323	1138	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
50321	ENST00000458919.1	ENST00000378482.7_2	chrX	38467467	38467529	RNU7-7P	+	snRNA	chrX	38420794	38548172	TSPAN7	+	protein_coding	62	same	11809_ID	chrX	38467468	38467529	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
51901	ENST00000462522.2	ENST00000522447.5_3	chr8	71566814	71567118	RN7SL19P	-	misc_RNA	chr8	71547552	71581409	LACTB2	-	protein_coding	304	same	10015_ID	chr8	71566815	71567118	304	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
52531	ENST00000467060.2	ENST00000429238.2_4	chr21	35291349	35291642	RN7SL740P	-	misc_RNA	chr21	34956992	35303911	AP000311.1	-	protein_coding	293	same	10395_ID	chr21	35291350	35291642	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
56051	ENST00000491114.1_3	ENST00000669711.1_3	chr10	97620304	97684601	AL365273.2	+	nonsense_mediated_decay	chr10	97492732	97849996	ENTPD1-AS1	-	lncRNA	64297	opposite	5539_ID	chr10	97620305	97684601	64297	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
59321	ENST00000507698.1_3	ENST00000637579.1_1	chr3	140986194	141085979	AC117383.1	-	lncRNA	chr3	140978964	141086595	PXYLP1	+	nonsense_mediated_decay	99785	opposite	3926_ID	chr3	140986195	141085979	99785	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	7
66981	ENST00000517265.1	ENST00000371007.6_4	chr1	67661822	67661926	RNU6-586P	+	snRNA	chr1	67557847	67697535	C1orf141	-	protein_coding	104	opposite	11357_ID	chr1	67661823	67661926	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
69231	ENST00000523733.1_3	ENST00000221114.8_2	chr8	30034069	30038404	AC026979.1	-	lncRNA	chr8	30013884	30041155	DCTN6	+	protein_coding	4335	opposite	2181_ID	chr8	30034070	30038404	4335	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	7
71171	ENST00000530908.5_1	ENST00000399201.5_3	chr21	37442238	37445464	CBR1	+	protein_coding	chr21	37415983	37451687	SETD4	-	protein_coding	3226	opposite	6559_ID	chr21	37442239	37445464	3226	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
72311	ENST00000535648.5_3	ENST00000649121.1_2	chr9	117781856	117880536	TNC	-	protein_coding	chr9	117731863	118003268	DELEC1	+	lncRNA	98683	opposite	12749_ID	chr9	117781857	117880536	98680	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
81551	ENST00000566912.2_4	ENST00000671160.1_1	chr6	22133433	22147422	NBAT1	-	lncRNA	chr6	21664415	22194641	CASC15	+	lncRNA	13989	opposite	9235_ID	chr6	22133434	22147422	13989	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
82091	ENST00000567984.1_3	ENST00000641956.1_1	chr16	29273593	29275800	AC009093.4	-	lncRNA	chr16	29150699	29342625	AC009093.10	+	lncRNA	2207	opposite	869_ID	chr16	29273594	29275800	2207	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
84851	ENST00000577394.1	ENST00000481195.6_4	chr5	133561447	133561543	MIR3661	+	miRNA	chr5	133530022	133561764	PPP2CA	-	protein_coding	96	opposite	8371_ID	chr5	133561448	133561543	96	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	7
87321	ENST00000578793.1	ENST00000277491.7	chr9	133275652	133275950	RN7SL665P	+	misc_RNA	chr9	133274028	133282639	AL354898.1	+	protein_coding	298	same	10350_ID	chr9	133275653	133275950	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
87411	ENST00000578855.1	ENST00000320805.8_3	chr16	28969903	28969982	MIR4517	+	miRNA	chr16	28962257	28978418	NFATC2IP	+	protein_coding	79	same	8597_ID	chr16	28969904	28969982	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
101871	ENST00000594558.1_1	ENST00000594769.5_8	chr19	39310805	39313863	AC104534.1	+	lncRNA	chr19	39308110	39330818	AC008982.1	-	protein_coding	3058	opposite	3547_ID	chr19	39310806	39313863	3058	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
102921	ENST00000597769.1_1	ENST00000247005.8_5	chr19	18992488	18994185	AC005197.1	+	lncRNA	chr19	18979353	19006967	GDF1	-	protein_coding	1697	opposite	249_ID	chr19	18992489	18994185	1697	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
106331	ENST00000605259.2_2	ENST00000650759.1_1	chr9	44997776	44999352	AL391987.2	+	protein_coding	chr9	44992765	45233072	FAM27C	+	lncRNA	1576	same	5593_ID	chr9	44997777	44999352	1576	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
107211	ENST00000606512.1_1	ENST00000522938.5_3	chr8	80868699	80869616	AC036214.2	-	lncRNA	chr8	80831094	80993010	AC036214.3	-	nonsense_mediated_decay	917	same	2274_ID	chr8	80868700	80869616	917	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
109731	ENST00000609067.1_1	ENST00000429892.5_3	chr12	122235416	122239878	AC084018.1	+	lncRNA	chr12	122233172	122241390	LINC01089	-	lncRNA	4462	opposite	2729_ID	chr12	122235417	122239878	4462	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
112141	ENST00000613093.1_1	ENST00000429892.5_3	chr12	122238702	122241309	AC084018.2	+	lncRNA	chr12	122233172	122241390	LINC01089	-	lncRNA	2607	opposite	2731_ID	chr12	122238703	122241309	2607	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	7
115481	ENST00000620963.1_3	ENST00000641956.1_1	chr16	29236914	29237669	AC009093.5	-	lncRNA	chr16	29150699	29342625	AC009093.10	+	lncRNA	755	opposite	871_ID	chr16	29236915	29237669	755	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
116171	ENST00000622268.1_1	ENST00000641956.1_1	chr16	29283540	29284093	AC009093.6	+	lncRNA	chr16	29150699	29342625	AC009093.10	+	lncRNA	553	same	872_ID	chr16	29283541	29284093	553	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
116561	ENST00000623441.1_2	ENST00000628444.1_3	chr15	22382381	22383507	AC135068.4	+	protein_coding	chr15	22303183	22383815	LINC02203	+	protein_coding	1126	same	4139_ID	chr15	22382382	22383507	1126	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	7	7
116951	ENST00000624187.1_3	ENST00000380259.7_5	chr11	5344588	5345527	OR51B2	-	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	939	same	9401_ID	chr11	5344589	5345527	939	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
119491	ENST00000641529.1_1	ENST00000380259.7_5	chr11	5405041	5414493	OR51M1	+	processed_transcript	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	9452	opposite	9427_ID	chr11	5405042	5414493	9452	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
119731	ENST00000641930.1_2	ENST00000380259.7_5	chr11	5470552	5477748	OR51I2	+	protein_coding	chr11	5275621	5699664	AC104389.5	-	nonsense_mediated_decay	7196	opposite	9425_ID	chr11	5470553	5477748	7196	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
120241	ENST00000647455.1_1	ENST00000665764.1_1	chr9	120521790	120639326	AL160272.1	+	lncRNA	chr9	120466680	120834592	AL160272.2	+	nonsense_mediated_decay	120534	same	5136_ID	chr9	120521791	120639326	117536	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	7
122401	ENST00000651525.1_3	ENST00000650759.1_1	chr9	44997999	44998719	AL627230.3	-	protein_coding	chr9	44992765	45233072	FAM27C	+	lncRNA	720	opposite	5850_ID	chr9	44998000	44998719	720	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
12554	ENST00000658292.1_3	ENST00000641956.1_1	chr16	29226705	29232361	AC009093.1	-	lncRNA	chr16	29150699	29342625	AC009093.10	+	lncRNA	5656	opposite	863_ID	chr16	29226706	29232361	5656	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
126381	ENST00000659736.1_1	ENST00000430192.5_3	chr2	8279482	8285080	U91324.1	+	lncRNA	chr2	8147900	8464760	LINC00299	-	lncRNA	5616	opposite	12836_ID	chr2	8279483	8285080	5598	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
93510	ENST00000363093.1	ENST00000372990.6_5	chr1	39392541	39392649	RNU6-605P	+	snRNA	chr1	39351478	39407502	RHBDL2	-	protein_coding	108	opposite	11373_ID	chr1	39392542	39392649	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
43331	ENST00000440367.7_2	ENST00000426937.5_4	chr3	42947633	42960826	ZNF662	+	protein_coding	chr3	42850974	42984284	KRBOX1	+	protein_coding	13193	same	13064_ID	chr3	42947634	42960826	13193	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	7
115981	ENST00000621974.1_1	ENST00000648603.1_4	chr15	57179304	57180417	AC010999.2	+	lncRNA	chr15	57087657	57210583	AC090517.5	-	lncRNA	1113	opposite	1172_ID	chr15	57179305	57180417	1113	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	7
117610	ENST00000364403.1	ENST00000290122.8_2	chr1	22337477	22337581	RNU6-776P	+	snRNA	chr1	22328149	22339035	CELA3A	+	protein_coding	104	same	11493_ID	chr1	22337478	22337581	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
52381	ENST00000466485.2	ENST00000290122.8_2	chr1	22337142	22337437	RN7SL186P	+	misc_RNA	chr1	22328149	22339035	CELA3A	+	protein_coding	295	same	10003_ID	chr1	22337143	22337437	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
97311	ENST00000584415.1	ENST00000290122.8_2	chr1	22330077	22330361	RN7SL768P	-	misc_RNA	chr1	22328149	22339035	CELA3A	+	protein_coding	284	opposite	10419_ID	chr1	22330078	22330361	284	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	7
3	ENST00000006275.8_3	ENST00000587566.5_4	chr19	45666185	45681495	TRAPPC6A	-	protein_coding	chr19	45582545	45769504	MARK4	+	protein_coding	15310	opposite	12773_ID	chr19	45666186	45681495	15310	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
28	ENST00000221462.9_2	ENST00000587566.5_4	chr19	45596436	45650543	PPP1R37	+	protein_coding	chr19	45582545	45769504	MARK4	+	protein_coding	56682	same	9616_ID	chr19	45596437	45650543	54107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
48	ENST00000229003.7_3	ENST00000547799.5_1	chr12	48103516	48119350	ENDOU	-	protein_coding	chr12	48099867	48136077	AC004241.1	+	lncRNA	15834	opposite	6906_ID	chr12	48103517	48119350	15834	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
58	ENST00000232219.6_4	ENST00000658348.1_1	chr3	139236275	139258671	RBP1	-	protein_coding	chr3	139108641	139501541	AC046134.2	+	lncRNA	22396	opposite	9722_ID	chr3	139236276	139258671	22396	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
64	ENST00000235382.7_2	ENST00000644134.1_3	chr1	192778168	192781405	RGS2	+	protein_coding	chr1	192460581	192894845	AL390957.1	-	lncRNA	3237	opposite	9742_ID	chr1	192778169	192781405	3237	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
124	ENST00000254227.4_4	ENST00000435827.6_3	chr1	27237979	27240466	NR0B2	-	protein_coding	chr1	27226728	27269267	NUDC	+	protein_coding	2487	opposite	9299_ID	chr1	27237980	27240466	2487	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
145	ENST00000257940.7_2	ENST00000551790.5_1	chr12	56512049	56521298	ZC3H10	+	protein_coding	chr12	56512033	56524883	ESYT1	+	protein_coding	9255	same	13005_ID	chr12	56512050	56521298	9249	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
154	ENST00000259845.5_4	ENST00000259881.10_5	chr6	31105310	31106843	PSORS1C2	-	protein_coding	chr6	31082576	31107869	PSORS1C1	+	protein_coding	1533	opposite	9670_ID	chr6	31105311	31106843	1533	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
156	ENST00000260403.7_2	ENST00000570199.2_4	chr15	43425783	43477342	TMEM62	+	protein_coding	chr15	43398422	43477977	AC068724.3	-	lncRNA	61866	opposite	12736_ID	chr15	43425784	43477342	51559	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
177	ENST00000265992.9_1	ENST00000669711.1_3	chr10	97803150	97820627	CCNJ	+	protein_coding	chr10	97492732	97849996	ENTPD1-AS1	-	lncRNA	17477	opposite	6587_ID	chr10	97803151	97820627	17477	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
182	ENST00000266970.9_2	ENST00000549233.2_6	chr12	56360613	56366573	CDK2	+	protein_coding	chr12	56352330	56367101	PMEL	-	protein_coding	6009	opposite	6602_ID	chr12	56360614	56366573	5960	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
191	ENST00000268919.6_2	ENST00000650577.1_3	chr17	51900287	51902554	KIF2B	+	protein_coding	chr17	51354120	52144186	AC034268.2	-	lncRNA	2267	opposite	7443_ID	chr17	51900288	51902554	2267	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
197	ENST00000272438.9_4	ENST00000606025.5_5	chr2	71213071	71222003	TEX261	-	protein_coding	chr2	71166447	71222466	AC007040.2	-	protein_coding	8932	same	12657_ID	chr2	71213072	71222003	8932	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
199	ENST00000272937.10_5	ENST00000456601.1_1	chr2	239146907	239148679	HES6	-	protein_coding	chr2	239140324	239164274	AC012485.1	+	lncRNA	2396	opposite	7228_ID	chr2	239146908	239148679	1772	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
228	ENST00000280358.5_2	ENST00000525987.5_1	chr11	112038094	112043279	TEX12	+	protein_coding	chr11	111957626	112064528	AP002884.2	+	retained_intron	5185	same	12652_ID	chr11	112038095	112043279	5185	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
330	ENST00000302188.8_4	ENST00000448427.1_1	chr2	28004245	28113254	RBKS	-	protein_coding	chr2	27994605	28210954	MRPL33	+	nonsense_mediated_decay	109303	opposite	9712_ID	chr2	28004246	28113254	109009	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
331	ENST00000302259.5_2	ENST00000302251.9_3	chr11	103907367	103909924	DDI1	+	protein_coding	chr11	103777916	104035107	PDGFD	-	protein_coding	2557	opposite	6778_ID	chr11	103907368	103909924	2557	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
338	ENST00000302964.4_4	ENST00000322122.8_3	chr16	31227282	31228456	PYDC1	-	protein_coding	chr16	31225439	31242858	TRIM72	+	protein_coding	1174	opposite	9687_ID	chr16	31227283	31228456	1174	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
366	ENST00000306954.5_4	ENST00000557048.1_1	chr14	93669238	93673410	GON7	-	protein_coding	chr14	93651318	93684932	AL110118.1	+	processed_transcript	4172	opposite	7145_ID	chr14	93669239	93673410	4172	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
395	ENST00000311069.6_5	ENST00000598664.5_2	chr19	7696500	7698605	PCP2	-	protein_coding	chr19	7694681	7707934	AC008763.2	+	nonsense_mediated_decay	2109	opposite	9515_ID	chr19	7696501	7698605	2105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
407	ENST00000312349.5_5	ENST00000519499.2_5	chr5	156768605	156772685	FNDC9	-	protein_coding	chr5	156768603	156887108	AC008676.3	-	protein_coding	4080	same	7052_ID	chr5	156768606	156772685	4080	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	5	6
447	ENST00000317802.9_3	ENST00000607452.6_3	chr2	54480314	54483366	TSPYL6	-	protein_coding	chr2	54198249	54532437	ACYP2	+	protein_coding	3052	opposite	12803_ID	chr2	54480315	54483366	3052	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
449	ENST00000317951.6_5	ENST00000587566.5_4	chr19	45653007	45664073	NKPD1	-	protein_coding	chr19	45582545	45769504	MARK4	+	protein_coding	11066	opposite	9266_ID	chr19	45653008	45664073	11066	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
468	ENST00000321039.4_2	ENST00000596831.1_3	chr19	57966157	57968510	VN1R1	-	protein_coding	chr19	57949337	57988871	AC004076.1	-	protein_coding	2353	same	12893_ID	chr19	57966158	57968510	2353	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
471	ENST00000321560.4_4	ENST00000578209.5_1	chr17	17104308	17109647	PLD6	-	protein_coding	chr17	17078677	17120993	MPRIP	+	protein_coding	5339	opposite	9580_ID	chr17	17104309	17109647	5339	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	6
495	ENST00000323675.4_2	ENST00000575310.1_1	chr17	7323642	7324951	SPEM1	+	protein_coding	chr17	7323421	7347400	AC113189.2	+	lncRNA	1309	same	12525_ID	chr17	7323643	7324951	1309	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
504	ENST00000325404.3_2	ENST00000660576.1_1	chr3	181429712	181432224	SOX2	+	protein_coding	chr3	180707557	181460672	SOX2-OT	+	lncRNA	2512	same	12494_ID	chr3	181429713	181432224	2512	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
516	ENST00000326669.6_2	ENST00000637181.2_2	chr6	149721397	149722414	SUMO4	+	protein_coding	chr6	149638847	149732743	TAB2	+	protein_coding	1017	same	12583_ID	chr6	149721398	149722414	1017	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
526	ENST00000327582.5_3	ENST00000372827.8_4	chr1	40235194	40237020	OXCT2	-	protein_coding	chr1	40222853	40254537	BMP8B	-	protein_coding	1826	same	9486_ID	chr1	40235195	40237020	1826	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
539	ENST00000329196.7_2	ENST00000634876.1_3	chr17	43922246	43924433	SPPL2C	+	protein_coding	chr17	43876755	43972996	MAPT-AS1	-	lncRNA	2187	opposite	12537_ID	chr17	43922247	43924433	2187	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
548	ENST00000329798.5_4	ENST00000641328.1_2	chr4	144498454	144621828	FREM3	-	protein_coding	chr4	144480609	144835100	AC107223.1	+	lncRNA	123374	opposite	7078_ID	chr4	144498455	144621828	123374	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
565	ENST00000332567.5_2	ENST00000592005.5_1	chr18	44558942	44561992	ELOA2	-	protein_coding	chr18	44497454	44624853	KATNAL2	+	protein_coding	3050	opposite	6897_ID	chr18	44558943	44561992	3050	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
568	ENST00000332663.3_1	ENST00000639059.1_2	chr15	22368477	22369561	AC135068.1	+	protein_coding	chr15	22303183	22383808	AC134980.2	+	protein_coding	1084	same	4136_ID	chr15	22368478	22369561	1084	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
596	ENST00000336077.11_3	ENST00000400864.3_1	chr19	55281244	55295774	KIR2DL1	+	protein_coding	chr19	55236000	55309738	AC245128.1	+	lncRNA	14530	same	7444_ID	chr19	55281245	55295774	14530	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
616	ENST00000338832.4_5	ENST00000531673.5_1	chr11	112118875	112131583	PLET1	-	protein_coding	chr11	112097110	112140678	PTS	+	nonsense_mediated_decay	12708	opposite	9581_ID	chr11	112118876	112131583	12708	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
693	ENST00000356057.9_2	ENST00000554253.1_3	chr14	59951160	59972122	JKAMP	+	protein_coding	chr14	59945991	59992155	AL121694.1	-	lncRNA	20968	opposite	7388_ID	chr14	59951161	59972122	20962	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	6
696	ENST00000356920.9_1	ENST00000404460.5_1	chr2	131975639	132022851	POTEE	+	protein_coding	chr2	131862925	132111282	PLEKHB2	+	protein_coding	47212	same	9598_ID	chr2	131975640	132022851	47212	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
712	ENST00000358615.9_4	ENST00000641328.1_2	chr4	144792016	144826712	GYPE	-	protein_coding	chr4	144480609	144835100	AC107223.1	+	lncRNA	34700	opposite	7204_ID	chr4	144792017	144826712	34696	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
725	ENST00000360128.11_2	ENST00000519356.1_3	chr8	33342699	33358780	MAK16	+	protein_coding	chr8	33330903	33367303	TTI2	-	processed_transcript	16081	opposite	7913_ID	chr8	33342700	33358780	16081	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	6
736	ENST00000360880.6_3	ENST00000407936.5_1	chr22	38368306	38383429	SOX10	-	protein_coding	chr22	38349703	38437113	POLR2F	+	protein_coding	16737	opposite	12491_ID	chr22	38368307	38383429	15123	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	6
756	ENST00000362127.1	ENST00000307534.8_3	chr10	91352499	91352586	MIR107	-	miRNA	chr10	91339253	91405329	PANK1	-	protein_coding	87	same	7963_ID	chr10	91352500	91352586	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
764	ENST00000362154.1	ENST00000497424.5_1	chr20	3898140	3898218	MIR103A2	+	miRNA	chr20	3869485	3907605	PANK2	+	protein_coding	78	same	7958_ID	chr20	3898141	3898218	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
769	ENST00000362165.1	ENST00000239231.7_4	chr5	167987896	167987982	MIR103A1	-	miRNA	chr5	167975499	168006373	PANK3	-	protein_coding	86	same	7957_ID	chr5	167987897	167987982	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
781	ENST00000362201.2	ENST00000540900.7_1	chr17	28444096	28444190	MIR423	+	miRNA	chr17	28442538	28512865	NSRP1	+	processed_transcript	94	same	8452_ID	chr17	28444097	28444190	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
792	ENST00000362224.1	ENST00000602823.1_3	chr6	72086662	72086734	MIR30C2	-	miRNA	chr6	72004875	72127139	AL136164.2	-	lncRNA	72	same	8230_ID	chr6	72086663	72086734	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
798	ENST00000362251.2	ENST00000443891.5_1	chr2	219267368	219267445	MIR26B	+	miRNA	chr2	219263060	219269399	CTDSP1	+	protein_coding	77	same	8209_ID	chr2	219267369	219267445	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
821	ENST00000362347.1	ENST00000532153.1_1	chr11	119527020	119527126	RNU6-1123P	+	snRNA	chr11	119479134	119529994	AP003393.1	+	lncRNA	106	same	10842_ID	chr11	119527021	119527126	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
828	ENST00000362390.1	ENST00000525234.1_3	chr11	129072860	129072965	RNU6-874P	+	snRNA	chr11	128936638	129149219	ARHGAP32	-	protein_coding	105	opposite	11574_ID	chr11	129072861	129072965	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
842	ENST00000362498.1	ENST00000533578.4_1	chr8	11249919	11250026	RNU6-1084P	-	snRNA	chr8	11225910	11296166	FAM167A-AS1	+	lncRNA	107	opposite	10822_ID	chr8	11249920	11250026	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
878	ENST00000362757.1	ENST00000642963.1_2	chr7	130739644	130739751	RNU6-1010P	-	snRNA	chr7	130476022	130792687	AC016831.6	-	lncRNA	107	same	10765_ID	chr7	130739645	130739751	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
883	ENST00000362775.1	ENST00000610426.5_3	chr5	74075133	74075238	RNU6-1330P	+	snRNA	chr5	74063073	74075938	NSA2	+	protein_coding	105	same	11013_ID	chr5	74075134	74075238	105	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
998	ENST00000363470.1	ENST00000489301.6_3	chr6	47791125	47791286	RNU1-105P	+	snRNA	chr6	47749717	47800516	OPN5	+	protein_coding	161	same	10551_ID	chr6	47791126	47791286	161	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
1011	ENST00000363506.1	ENST00000533507.5_1	chr11	47598022	47598140	RNU5E-10P	-	snRNA	chr11	47586887	47606113	NDUFS3	+	processed_transcript	118	opposite	10745_ID	chr11	47598023	47598140	118	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
1014	ENST00000363519.1	ENST00000286371.8_2	chr3	141621765	141621872	RNU6-509P	-	snRNA	chr3	141595484	141645391	ATP1B3	+	protein_coding	107	opposite	11294_ID	chr3	141621766	141621872	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
1017	ENST00000363533.1	ENST00000235835.7_3	chr1	19631569	19631676	RNU6-1099P	-	snRNA	chr1	19630458	19638640	AKR7A2	-	protein_coding	107	same	10828_ID	chr1	19631570	19631676	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
1029	ENST00000363599.1	ENST00000608933.6_4	chr4	89196356	89196460	RNU6-112P	-	snRNA	chr4	89178771	89205713	PPM1K	-	protein_coding	104	same	10845_ID	chr4	89196357	89196460	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
1181	ENST00000364421.1	ENST00000393004.6_3	chr6	76183453	76183610	RNU1-34P	-	snRNA	chr6	76001574	76203345	FILIP1	-	protein_coding	157	same	10581_ID	chr6	76183454	76183610	157	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
1185	ENST00000364432.1	ENST00000361436.10_4	chr9	130210779	130210909	SNORA65	-	snoRNA	chr9	130209952	130213685	RPL12	-	protein_coding	130	same	12193_ID	chr9	130210780	130210909	130	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
1223	ENST00000364629.1	ENST00000286175.12_3	chr2	201746437	201746544	RNU6-312P	-	snRNA	chr2	201735629	201753992	PPIL3	-	protein_coding	107	same	11147_ID	chr2	201746438	201746544	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
1243	ENST00000364730.1	ENST00000658348.1_1	chr3	139302946	139303287	RN7SKP124	-	misc_RNA	chr3	139108641	139501541	AC046134.2	+	lncRNA	341	opposite	9777_ID	chr3	139302947	139303287	341	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
1270	ENST00000364841.1	ENST00000341700.7_4	chr9	80250118	80250225	RNU6-1303P	-	snRNA	chr9	80037994	80263238	GNA14	-	protein_coding	107	same	10993_ID	chr9	80250119	80250225	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
1298	ENST00000364982.1	ENST00000269216.10_4	chr18	19760072	19760179	RNU6-702P	-	snRNA	chr18	19749549	19782491	GATA6	+	protein_coding	107	opposite	11441_ID	chr18	19760073	19760179	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
1300	ENST00000365012.1	ENST00000379607.10_4	chrX	20154183	20154253	snoU2-30	-	snoRNA	chrX	20142642	20159956	EIF1AX	-	protein_coding	70	same	12473_ID	chrX	20154184	20154253	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
1311	ENST00000365084.1	ENST00000611255.5_5	chr10	78020557	78020661	RNU6-673P	-	snRNA	chr10	77191381	78319926	LRMDA	+	protein_coding	104	opposite	11424_ID	chr10	78020558	78020661	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
1331	ENST00000365223.1	ENST00000332968.11_5	chr18	47015614	47015678	SNORD58C	-	snoRNA	chr18	47008521	47018849	RPL17-C18orf32	-	protein_coding	64	same	12431_ID	chr18	47015615	47015678	64	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
1369	ENST00000365477.1	ENST00000478244.6_4	chr13	114133229	114133393	RNU1-16P	-	snRNA	chr13	114110133	114145026	DCUN1D2	-	protein_coding	164	same	10569_ID	chr13	114133230	114133393	164	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
1409	ENST00000366397.3_3	ENST00000356413.5_2	chrX	69383691	69385056	IGBP1-AS1	-	lncRNA	chrX	69353296	69386174	IGBP1	+	protein_coding	1365	opposite	7334_ID	chrX	69383692	69385056	1365	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
1424	ENST00000367165.3_2	ENST00000367166.5_4	chr6	155585146	155597682	CLDN20	+	protein_coding	chr6	155577267	155635618	TFB1M	-	protein_coding	12536	opposite	6661_ID	chr6	155585147	155597682	12536	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
1448	ENST00000368908.10_4	ENST00000602841.5_3	chr1	151132223	151138378	LYSMD1	-	protein_coding	chr1	151129139	151141609	SCNM1	+	protein_coding	6201	opposite	7894_ID	chr1	151132224	151138378	6155	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
1458	ENST00000369929.8_1	ENST00000599405.3_2	chrX	153485224	153498755	OPN1MW2	+	protein_coding	chrX	153485202	153499470	OPN1MW3	+	protein_coding	13531	same	9341_ID	chrX	153485225	153498755	13531	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	6
1483	ENST00000371614.2_3	ENST00000371626.9_3	chr1	52497774	52499482	KTI12	-	protein_coding	chr1	52485802	52520863	TXNDC12	-	protein_coding	1708	same	7497_ID	chr1	52497775	52499482	1708	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
1495	ENST00000372491.4_3	ENST00000674559.1_1	chr9	131937830	131940540	IER5L	-	protein_coding	chr9	131902286	132022854	AL158151.3	+	nonsense_mediated_decay	2710	opposite	7324_ID	chr9	131937831	131940540	2710	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
1539	ENST00000375824.1_4	ENST00000503322.1_2	chr6	31683132	31685581	LY6G6D	+	protein_coding	chr6	31674680	31685695	LY6G6F-LY6G6D	+	protein_coding	2449	same	7886_ID	chr6	31683133	31685581	2449	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	6
1651	ENST00000383875.1	ENST00000332968.11_5	chr18	47017652	47017717	SNORD58A	-	snoRNA	chr18	47008521	47018849	RPL17-C18orf32	-	protein_coding	65	same	12427_ID	chr18	47017653	47017717	65	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
1685	ENST00000383958.1	ENST00000457380.5_3	chrX	46946904	46947011	RNU6-1189P	+	snRNA	chrX	46937753	46952713	RGN	+	protein_coding	107	same	10891_ID	chrX	46946905	46947011	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
1694	ENST00000383971.1	ENST00000504578.2_1	chr5	96511653	96511817	RNU1-73P	-	snRNA	chr5	96424778	96772921	LIX1-AS1	+	lncRNA	164	opposite	10599_ID	chr5	96511654	96511817	164	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
1709	ENST00000384003.1	ENST00000255389.10_4	chr17	17481944	17482053	RNU6-468P	+	snRNA	chr17	17408876	17495022	PEMT	-	protein_coding	109	opposite	11263_ID	chr17	17481945	17482053	109	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
1719	ENST00000384033.1	ENST00000301821.11_3	chr3	39449879	39450030	SNORA6	+	snoRNA	chr3	39448210	39454033	RPSA	+	protein_coding	151	same	12191_ID	chr3	39449880	39450030	151	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
1735	ENST00000384084.1	ENST00000343262.9_4	chr16	2012334	2012467	SNORA10	-	snoRNA	chr16	2012058	2014827	RPS2	-	protein_coding	133	same	12151_ID	chr16	2012335	2012467	133	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
1777	ENST00000384205.1	ENST00000660576.1_1	chr3	180949524	180949631	RNU6-4P	+	snRNA	chr3	180707557	181460672	SOX2-OT	+	lncRNA	107	same	11284_ID	chr3	180949525	180949631	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
1782	ENST00000384214.1	ENST00000527446.5_1	chr11	75111434	75111582	SNORD15A	+	snoRNA	chr11	75110574	75133324	RPS3	+	protein_coding	148	same	12377_ID	chr11	75111435	75111582	148	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
1873	ENST00000384504.1	ENST00000256429.8_4	chr18	51748653	51748782	SNORA37	-	snoRNA	chr18	51677975	51751039	MBD2	-	protein_coding	129	same	12172_ID	chr18	51748654	51748782	129	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
1888	ENST00000384536.1	ENST00000447459.7_8	chr16	28009615	28009722	RNU6-1241P	-	snRNA	chr16	27798848	28075035	GSG1L	-	protein_coding	107	same	10941_ID	chr16	28009616	28009722	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
1912	ENST00000384593.1	ENST00000493214.2_3	chr3	153189254	153189360	RNU6-901P	-	snRNA	chr3	153102897	153480315	LINC02006	-	lncRNA	106	same	11595_ID	chr3	153189255	153189360	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
1953	ENST00000384713.1	ENST00000555989.5_1	chr14	71865053	71865124	SNORD56B	+	snoRNA	chr14	71787165	72054482	SIPA1L1	+	processed_transcript	71	same	12423_ID	chr14	71865054	71865124	71	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
1954	ENST00000384714.1	ENST00000527446.5_1	chr11	75115464	75115610	SNORD15B	+	snoRNA	chr11	75110574	75133324	RPS3	+	protein_coding	146	same	12378_ID	chr11	75115465	75115610	146	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
1962	ENST00000384728.1	ENST00000507419.5_3	chr5	133970528	133970635	RNU6-1311P	-	snRNA	chr5	133942118	133984961	SAR1B	-	protein_coding	107	same	11000_ID	chr5	133970529	133970635	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
1964	ENST00000384730.1	ENST00000467125.1_5	chr6	117778896	117779001	RNU6-253P	-	snRNA	chr6	117639373	117894734	AL132671.2	-	protein_coding	105	same	11103_ID	chr6	117778897	117779001	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
1990	ENST00000384817.1	ENST00000606639.1_1	chr2	56210101	56210211	MIR217	-	miRNA	chr2	56179292	56408787	AC011306.1	+	lncRNA	110	opposite	8186_ID	chr2	56210102	56210211	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
2019	ENST00000384851.1	ENST00000611255.5_5	chr10	77312215	77312311	MIR606	+	miRNA	chr10	77191381	78319926	LRMDA	+	protein_coding	96	same	9007_ID	chr10	77312216	77312311	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
2109	ENST00000385008.1	ENST00000265753.12_3	chr7	73605527	73605624	MIR590	+	miRNA	chr7	73588574	73611431	EIF4H	+	protein_coding	97	same	8993_ID	chr7	73605528	73605624	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
2139	ENST00000385049.1	ENST00000422209.1_3	chr3	44903379	44903473	MIR564	+	miRNA	chr3	44884614	44914868	KIF15	+	nonsense_mediated_decay	94	same	8949_ID	chr3	44903380	44903473	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
2143	ENST00000385063.1	ENST00000606639.1_1	chr2	56216084	56216194	MIR216A	-	miRNA	chr2	56179292	56408787	AC011306.1	+	lncRNA	110	opposite	8182_ID	chr2	56216085	56216194	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
2159	ENST00000385084.1	ENST00000536780.6_2	chr15	89911247	89911337	MIR9-3	+	miRNA	chr15	89904809	89941718	MIR9-3HG	+	lncRNA	90	same	9100_ID	chr15	89911248	89911337	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
2164	ENST00000385092.1	ENST00000602823.1_3	chr6	72113253	72113324	MIR30A	-	miRNA	chr6	72004875	72127139	AL136164.2	-	lncRNA	71	same	8227_ID	chr6	72113254	72113324	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
2219	ENST00000385238.1	ENST00000415009.5_3	chr7	5535449	5535548	MIR589	-	miRNA	chr7	5470965	5553383	FBXL18	-	nonsense_mediated_decay	99	same	8992_ID	chr7	5535450	5535548	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
2250	ENST00000385288.1	ENST00000401886.5_1	chr22	20020661	20020743	MIR185	+	miRNA	chr22	20004536	20052881	TANGO2	+	protein_coding	82	same	8130_ID	chr22	20020662	20020743	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
2281	ENST00000389583.5_2	ENST00000669460.1_3	chr10	45406784	45432458	TMEM72	+	protein_coding	chr10	45289031	45455157	TMEM72-AS1	-	lncRNA	25695	opposite	12737_ID	chr10	45406785	45432458	25674	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
2282	ENST00000389970.7_4	ENST00000439129.5_2	chr22	42522502	42526883	CYP2D6	-	protein_coding	chr22	42486934	42533751	NDUFA6-DT	+	lncRNA	4383	opposite	6755_ID	chr22	42522503	42526883	4381	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
2298	ENST00000390186.2	ENST00000606639.1_1	chr2	56227848	56227930	MIR216B	-	miRNA	chr2	56179292	56408787	AC011306.1	+	lncRNA	82	opposite	8185_ID	chr2	56227849	56227930	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
2304	ENST00000390219.1	ENST00000648456.1_2	chr14	101318726	101318824	MIR770	+	miRNA	chr14	101292434	101327363	MEG3	+	lncRNA	98	same	9090_ID	chr14	101318727	101318824	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
2313	ENST00000390236.1	ENST00000380317.8_4	chr16	30905223	30905306	MIR762	+	miRNA	chr16	30844946	30905623	BCL7C	-	protein_coding	83	opposite	9080_ID	chr16	30905224	30905306	83	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
2334	ENST00000390736.2	ENST00000650021.1_1	chr2	34628730	34628824	AC011748.1	-	miRNA	chr2	34414879	34947900	LINC01320	+	lncRNA	94	opposite	1289_ID	chr2	34628731	34628824	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
2336	ENST00000390740.2	ENST00000664407.1_3	chr1	177522004	177522095	AL122019.1	+	miRNA	chr1	177362183	177889287	AL136114.1	-	lncRNA	91	opposite	4798_ID	chr1	177522005	177522095	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
2343	ENST00000390772.2	ENST00000512784.6_4	chr14	76814397	76814481	AC016543.1	-	miRNA	chr14	76777054	76964818	ESRRB	+	protein_coding	84	opposite	1532_ID	chr14	76814398	76814481	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
2354	ENST00000390813.1	ENST00000498589.1_3	chr22	22007269	22007347	MIR301B	+	miRNA	chr22	22006558	22024526	AP000553.1	+	lncRNA	78	same	8216_ID	chr22	22007270	22007347	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
2360	ENST00000390851.1	ENST00000665340.1_3	chr7	141427783	141427948	RNU1-82P	+	snRNA	chr7	141403802	141438030	WEE2-AS1	-	lncRNA	165	opposite	10603_ID	chr7	141427784	141427948	165	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
2369	ENST00000390897.1	ENST00000404460.5_1	chr2	131987179	131987286	RNU6-127P	+	snRNA	chr2	131862925	132111282	PLEKHB2	+	protein_coding	107	same	10973_ID	chr2	131987180	131987286	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
2372	ENST00000390913.1	ENST00000667197.1_1	chr5	60959971	60960066	RNU6-913P	-	snRNA	chr5	60933592	61089228	C5orf64	+	lncRNA	95	opposite	11606_ID	chr5	60959972	60960066	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
2409	ENST00000391080.1	ENST00000447459.7_8	chr16	27874571	27874677	RNU6-159P	+	snRNA	chr16	27798848	28075035	GSG1L	-	protein_coding	106	opposite	11039_ID	chr16	27874572	27874677	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
2429	ENST00000391149.1	ENST00000645463.1_1	chr8	127683766	127683899	RNU11-4P	+	snRNA	chr8	127570137	128305107	PCAT1	+	lncRNA	133	same	10615_ID	chr8	127683767	127683899	133	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
2431	ENST00000391155.1	ENST00000274458.9_2	chr5	115524151	115524249	RNU6-644P	-	snRNA	chr5	115420721	115628984	COMMD10	+	protein_coding	98	opposite	11402_ID	chr5	115524152	115524249	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
2443	ENST00000391214.1	ENST00000621705.1_2	chr14	20008752	20008859	RNU6-1268P	-	snRNA	chr14	20006912	20010958	AL512624.2	+	lncRNA	107	opposite	10960_ID	chr14	20008753	20008859	107	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
2516	ENST00000397541.6_2	ENST00000665340.1_3	chr7	141408152	141431071	WEE2	+	protein_coding	chr7	141403802	141438030	WEE2-AS1	-	lncRNA	22919	opposite	12910_ID	chr7	141408153	141431071	22919	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
2581	ENST00000401235.1	ENST00000497432.5_3	chr2	158298061	158298151	AC019201.1	+	miRNA	chr2	158287382	158345473	CYTIP	-	processed_transcript	90	opposite	1696_ID	chr2	158298062	158298151	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
2665	ENST00000408126.1	ENST00000373374.7_3	chr1	34641466	34641550	AC115286.1	-	miRNA	chr1	34632483	34684732	C1orf94	+	protein_coding	84	opposite	3886_ID	chr1	34641467	34641550	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
2671	ENST00000408140.1	ENST00000254730.11_2	chr3	128081007	128081101	MIR1280	+	miRNA	chr3	127872323	128127489	EEFSEC	+	protein_coding	94	same	8040_ID	chr3	128081008	128081101	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
2672	ENST00000408142.1	ENST00000216036.9_4	chr22	23478806	23478897	AC000029.1	+	miRNA	chr22	23401592	23484177	RSPH14	-	protein_coding	91	opposite	13_ID	chr22	23478807	23478897	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
2683	ENST00000408185.1	ENST00000335953.9_2	chr11	113957532	113957651	AP000908.1	-	miRNA	chr11	113930432	114127487	ZBTB16	+	protein_coding	119	opposite	6051_ID	chr11	113957533	113957651	119	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
2689	ENST00000408195.2	ENST00000295971.12_6	chr4	40465732	40465820	AC098869.1	+	miRNA	chr4	40425296	40631881	RBM47	-	protein_coding	88	opposite	3347_ID	chr4	40465733	40465820	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
2726	ENST00000408305.1	ENST00000611255.5_5	chr10	77887008	77887069	AC012047.1	-	miRNA	chr10	77191381	78319926	LRMDA	+	protein_coding	61	opposite	1320_ID	chr10	77887009	77887069	61	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
2758	ENST00000408378.1	ENST00000642083.1_1	chr8	7946462	7946611	MIR548I3	-	miRNA	chr8	7917117	8057495	AC105233.4	+	lncRNA	149	opposite	8905_ID	chr8	7946463	7946611	149	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
2760	ENST00000408383.1	ENST00000500779.2_1	chr5	110891592	110891678	AC008967.1	+	miRNA	chr5	110847923	111075423	STARD4-AS1	+	lncRNA	86	same	840_ID	chr5	110891593	110891678	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
2772	ENST00000408413.1	ENST00000616661.5_4	chr1	12629999	12630100	RNU6ATAC18P	-	snRNA	chr1	12627938	12678216	DHRS3	-	protein_coding	101	same	11667_ID	chr1	12630000	12630100	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
2786	ENST00000408457.1	ENST00000494118.5_4	chr3	21871229	21871329	AC023798.1	+	miRNA	chr3	21478503	22414123	ZNF385D	-	nonsense_mediated_decay	100	opposite	1972_ID	chr3	21871230	21871329	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
2827	ENST00000408547.1	ENST00000639785.2_4	chr3	122000699	122000769	AC068754.1	+	miRNA	chr3	121902514	122010476	CASR	+	protein_coding	70	same	2440_ID	chr3	122000700	122000769	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
2854	ENST00000408607.1	ENST00000650577.1_3	chr17	51614873	51614965	AC090079.1	+	miRNA	chr17	51354120	52144186	AC034268.2	-	lncRNA	92	opposite	2867_ID	chr17	51614874	51614965	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
2955	ENST00000408840.1	ENST00000369825.6_4	chr10	105154009	105154158	MIR1307	-	miRNA	chr10	105148797	105156249	ATP5MD	-	protein_coding	149	same	8080_ID	chr10	105154010	105154158	149	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
3013	ENST00000410146.1	ENST00000537989.5_4	chr6	90710940	90711225	RN7SKP110	-	misc_RNA	chr6	90636247	91006627	BACH2	-	protein_coding	285	same	9766_ID	chr6	90710941	90711225	285	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
3022	ENST00000410175.1	ENST00000647105.1_1	chr5	124686560	124686824	RN7SKP117	-	misc_RNA	chr5	124229052	124921977	LINC02240	+	lncRNA	264	opposite	9771_ID	chr5	124686561	124686824	264	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
3095	ENST00000410477.1	ENST00000557481.6_3	chr15	94440140	94440256	AC103996.1	-	miRNA	chr15	94261770	94443828	LINC01579	-	lncRNA	116	same	3493_ID	chr15	94440141	94440256	116	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
3102	ENST00000410499.1	ENST00000346618.8_3	chr6	20452599	20452704	RNU6-141P	-	snRNA	chr6	20402109	20493945	E2F3	+	protein_coding	105	opposite	11028_ID	chr6	20452600	20452704	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
3152	ENST00000410759.1	ENST00000394684.8_1	chr4	108788962	108789066	RNU6-733P	-	snRNA	chr4	108745718	108836203	SGMS2	+	protein_coding	104	opposite	11462_ID	chr4	108788963	108789066	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
3223	ENST00000411143.1	ENST00000644134.1_3	chr1	192844815	192845115	RN7SKP126	-	misc_RNA	chr1	192460581	192894845	AL390957.1	-	lncRNA	300	same	9779_ID	chr1	192844816	192845115	300	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
3240	ENST00000411269.1	ENST00000427043.4_2	chr19	15163740	15163885	AC004699.1	+	miRNA	chr19	15160290	15169104	CASP14	+	protein_coding	145	same	159_ID	chr19	15163741	15163885	145	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
3302	ENST00000411981.1_3	ENST00000339399.5_2	chr9	100748832	100749938	AL354726.1	-	lncRNA	chr9	100745622	100778225	ANP32B	+	protein_coding	1106	opposite	5277_ID	chr9	100748833	100749938	1106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
3308	ENST00000412137.1_3	ENST00000611255.5_5	chr10	78197165	78198533	AC013286.1	-	lncRNA	chr10	77191381	78319926	LRMDA	+	protein_coding	1368	opposite	1432_ID	chr10	78197166	78198533	1368	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
3374	ENST00000413988.3_6	ENST00000587566.5_4	chr19	45715627	45748665	EXOC3L2	-	protein_coding	chr19	45582545	45769504	MARK4	+	protein_coding	33038	opposite	6945_ID	chr19	45715628	45748665	33038	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
3376	ENST00000414039.1_3	ENST00000656153.1_3	chr1	94784034	94790125	AC097059.1	-	lncRNA	chr1	94713425	94876592	ARHGAP29-AS1	+	lncRNA	6091	opposite	3302_ID	chr1	94784035	94790125	6091	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
3395	ENST00000414409.1_1	ENST00000648455.1_1	chr7	51681946	51698566	AC005999.1	+	lncRNA	chr7	51539413	51797412	AC005999.2	+	lncRNA	16620	same	392_ID	chr7	51681947	51698566	16620	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
3432	ENST00000415088.1_1	ENST00000395715.8_5	chr8	116521828	116523552	AF178030.1	+	lncRNA	chr8	116420723	116681202	TRPS1	-	protein_coding	1724	opposite	4399_ID	chr8	116521829	116523552	1724	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
3450	ENST00000415437.1_1	ENST00000618415.4_3	chr1	163131464	163182813	RGS5-AS1	+	lncRNA	chr1	163112088	163291581	RGS5	-	protein_coding	51349	opposite	9744_ID	chr1	163131465	163182813	51349	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
3462	ENST00000415736.1_3	ENST00000467125.1_5	chr6	117772292	117774688	AL132671.1	-	lncRNA	chr6	117639373	117894734	AL132671.2	-	protein_coding	8136	same	4812_ID	chr6	117772293	117774688	2396	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
3486	ENST00000416448.2_1	ENST00000367845.6_3	chr6	135262529	135263588	AL445190.1	+	lncRNA	chr6	135238533	135271253	ALDH8A1	-	protein_coding	1059	opposite	5614_ID	chr6	135262530	135263588	1059	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
3518	ENST00000417465.1_1	ENST00000394253.7_3	chr6	41836359	41837469	AL160163.1	+	lncRNA	chr6	41757633	41861898	USP49	-	protein_coding	1110	opposite	5134_ID	chr6	41836360	41837469	1110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
3534	ENST00000418031.2_4	ENST00000361669.6_1	chr7	86411672	86432725	GRM3-AS1	-	lncRNA	chr7	86273229	86494200	GRM3	+	protein_coding	21053	opposite	7183_ID	chr7	86411673	86432725	21053	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
3556	ENST00000418574.3_1	ENST00000637435.1_1	chr12	16846733	16848911	AC007529.1	+	lncRNA	chr12	16814699	16941309	AC007529.2	+	lncRNA	2178	same	589_ID	chr12	16846734	16848911	2178	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
3588	ENST00000419481.1_3	ENST00000634371.1_3	chr6	30913755	30922639	HCG21	-	lncRNA	chr6	30899138	30923413	SFTA2	-	protein_coding	8884	same	7222_ID	chr6	30913756	30922639	8884	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
3600	ENST00000419852.1_1	ENST00000399084.5_6	chr6	32627656	32628506	HLA-DQB1-AS1	+	lncRNA	chr6	32627243	32636160	HLA-DQB1	-	protein_coding	850	opposite	7239_ID	chr6	32627657	32628506	850	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	6
3681	ENST00000421866.1_3	ENST00000368476.4_4	chr1	154551540	154552139	AL592078.1	-	lncRNA	chr1	154540253	154552489	CHRNB2	+	protein_coding	599	opposite	5802_ID	chr1	154551541	154552139	599	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
3707	ENST00000422417.1	ENST00000370550.10_2	chr1	87409367	87410425	RP4-604K5.2	-	antisense	chr1	87380317	87575665	HS2ST1	+	protein_coding	1058	opposite	11943_ID	chr1	87409368	87410425	1058	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
3739	ENST00000423187.1_3	ENST00000419450.1_1	chr1	71181615	71185972	AL513285.1	-	lncRNA	chr1	71172135	71252151	LINC01788	+	lncRNA	4357	opposite	5707_ID	chr1	71181616	71185972	4357	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
3743	ENST00000423246.1_2	ENST00000620217.4_3	chr13	114006130	114016183	GRTP1-AS1	+	lncRNA	chr13	113978478	114018463	GRTP1	-	protein_coding	10224	opposite	7187_ID	chr13	114006131	114016183	10053	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
3763	ENST00000423873.5_3	ENST00000457714.5_1	chr3	173628287	173638586	NLGN1-AS1	-	lncRNA	chr3	173116237	174004434	NLGN1	+	protein_coding	10299	opposite	9271_ID	chr3	173628288	173638586	10299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
3769	ENST00000424026.1_1	ENST00000379607.10_4	chrX	20158085	20158562	EIF1AX-AS1	+	lncRNA	chrX	20142642	20159956	EIF1AX	-	protein_coding	477	opposite	6885_ID	chrX	20158086	20158562	477	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
3786	ENST00000424487.1_1	ENST00000377038.8_4	chr1	10518611	10519395	AL354956.1	+	lncRNA	chr1	10516578	10532586	DFFA	-	protein_coding	784	opposite	5303_ID	chr1	10518612	10519395	784	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
3803	ENST00000424887.1_3	ENST00000477014.1_1	chrX	102881003	102881420	TCEAL3-AS1	-	lncRNA	chrX	102862898	102884618	TCEAL3	+	processed_transcript	417	opposite	12641_ID	chrX	102881004	102881420	417	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
3863	ENST00000427022.1_1	ENST00000362077.4_1	chr21	35577355	35697334	AP000317.1	+	lncRNA	chr21	35445891	35732332	AP000317.2	+	lncRNA	119979	same	5974_ID	chr21	35577356	35697334	119979	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
3915	ENST00000428794.1_1	ENST00000371626.9_3	chr1	52516589	52518355	TXNDC12-AS1	+	lncRNA	chr1	52485802	52520863	TXNDC12	-	protein_coding	1766	opposite	12826_ID	chr1	52516590	52518355	1766	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
3960	ENST00000430070.7_5	ENST00000533507.5_1	chr11	47593748	47600522	KBTBD4	-	protein_coding	chr11	47586887	47606113	NDUFS3	+	processed_transcript	6780	opposite	7397_ID	chr11	47593749	47600522	6774	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
3986	ENST00000430640.1_1	ENST00000380672.9_5	chr9	16473185	16476235	AL449983.1	+	lncRNA	chr9	16409500	16870668	BNC2	-	protein_coding	3050	opposite	5647_ID	chr9	16473186	16476235	3050	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
4019	ENST00000431691.1_3	ENST00000498382.5_1	chr1	224905205	224918364	CNIH3-AS1	-	lncRNA	chr1	224716892	224927323	CNIH3	+	processed_transcript	13159	opposite	6675_ID	chr1	224905206	224918364	13159	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
4030	ENST00000431993.3_5	ENST00000514208.5_2	chrX	148629754	148631477	HSFX3	-	protein_coding	chrX	148622568	148632055	EOLA1	+	protein_coding	1723	opposite	7308_ID	chrX	148629755	148631477	1723	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	6
4047	ENST00000432412.1_3	ENST00000400128.5_1	chr21	19394686	19487222	AF130417.1	-	lncRNA	chr21	19273579	19639690	CHODL	+	protein_coding	92536	opposite	4392_ID	chr21	19394687	19487222	92536	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
4071	ENST00000433125.1_1	ENST00000216085.12_5	chr22	29656877	29658026	AL031186.1	+	lncRNA	chr22	29655860	29663970	RHBDD3	-	protein_coding	1149	opposite	4510_ID	chr22	29656878	29658026	1149	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
4074	ENST00000433182.1_1	ENST00000346618.8_3	chr6	20438051	20440409	E2F3-IT1	+	lncRNA	chr6	20402109	20493945	E2F3	+	protein_coding	2358	same	6865_ID	chr6	20438052	20440409	2358	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
4079	ENST00000433368.6_3	ENST00000653295.1_1	chr6	49695114	49712150	CRISP3	-	protein_coding	chr6	49682037	49788212	AL121974.1	+	lncRNA	17062	opposite	6714_ID	chr6	49695115	49712150	17036	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
4103	ENST00000434164.1_3	ENST00000643089.1_4	chrY	16905521	16915913	NLGN4Y-AS1	-	lncRNA	chrY	16634452	16957519	NLGN4Y	+	protein_coding	10392	opposite	9272_ID	chrY	16905522	16915913	10392	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
4105	ENST00000434207.1_1	ENST00000370203.9_2	chr1	95585702	95604110	AC092802.3	+	lncRNA	chr1	95582910	95663163	TLCD4	+	protein_coding	18408	same	3152_ID	chr1	95585703	95604110	18408	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
4164	ENST00000435713.1_1	ENST00000622030.2_4	chr2	31752011	31788534	AL133247.1	+	lncRNA	chr2	31747549	31806007	SRD5A2	-	protein_coding	36523	opposite	4829_ID	chr2	31752012	31788534	36523	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
4186	ENST00000436306.1_1	ENST00000494118.5_4	chr3	21998627	22021320	ZNF385D-AS2	+	lncRNA	chr3	21478503	22414123	ZNF385D	-	nonsense_mediated_decay	37263	opposite	13044_ID	chr3	21998628	22021320	22693	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
4204	ENST00000436848.1_3	ENST00000396026.7_2	chr20	18294408	18295755	ZNF133-AS1	-	lncRNA	chr20	18268926	18297638	ZNF133	+	protein_coding	1347	opposite	13018_ID	chr20	18294409	18295755	1347	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	6
4214	ENST00000437040.1_3	ENST00000317357.10_2	chr6	107831006	107832925	AL121957.1	-	lncRNA	chr6	107811320	107982510	SOBP	+	protein_coding	1919	opposite	4789_ID	chr6	107831007	107832925	1919	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
4228	ENST00000437244.6_3	ENST00000334651.11_4	chrX	2252335	2254451	DHRSX-IT1	-	lncRNA	chrX	2137546	2419017	DHRSX	-	protein_coding	52116	same	6797_ID	chrX	2252336	2254451	2116	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
4240	ENST00000437683.1_3	ENST00000389554.8_2	chr2	162279169	162280088	AC009487.1	-	lncRNA	chr2	162272807	162282381	TBR1	+	protein_coding	919	opposite	963_ID	chr2	162279170	162280088	919	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	6
4247	ENST00000437983.2_3	ENST00000379826.5_4	chr13	37423502	37424183	SMAD9-IT1	-	lncRNA	chr13	37418967	37494375	SMAD9	-	protein_coding	681	same	12121_ID	chr13	37423503	37424183	681	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
4256	ENST00000438443.1_1	ENST00000667782.1_3	chr2	77899340	77900918	AC084149.1	+	lncRNA	chr2	77879150	78517595	AC012494.1	-	lncRNA	1578	opposite	2740_ID	chr2	77899341	77900918	1578	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
4286	ENST00000439145.1_1	ENST00000341700.7_4	chr9	80071210	80141613	GNA14-AS1	+	lncRNA	chr9	80037994	80263238	GNA14	-	protein_coding	70403	opposite	7136_ID	chr9	80071211	80141613	70403	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
4295	ENST00000439285.1_1	ENST00000400331.10_4	chr7	20181538	20193154	MACC1-AS1	+	lncRNA	chr7	20174277	20257007	MACC1	-	protein_coding	11616	opposite	7899_ID	chr7	20181539	20193154	11616	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
4303	ENST00000439447.1_1	ENST00000380672.9_5	chr9	16625673	16626388	AL450003.1	+	lncRNA	chr9	16409500	16870668	BNC2	-	protein_coding	715	opposite	5648_ID	chr9	16625674	16626388	715	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
4344	ENST00000440574.1_1	ENST00000451391.5_3	chr2	209119970	209120905	IDH1-AS1	+	lncRNA	chr2	209113320	209130798	IDH1	-	protein_coding	935	opposite	7323_ID	chr2	209119971	209120905	935	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
4365	ENST00000441184.1_1	ENST00000440575.6_4	chr6	108444836	108480596	OSTM1-AS1	+	lncRNA	chr6	108366034	108487044	OSTM1	-	protein_coding	35936	opposite	9480_ID	chr6	108444837	108480596	35760	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
4396	ENST00000442155.1_1	ENST00000608254.1	chrX	22716573	22787083	AC004470.1	+	lncRNA	chrX	22277913	23311263	RP11-40F8.2	-	lincRNA	70510	opposite	132_ID	chrX	22716574	22787083	70510	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
4413	ENST00000442477.1_3	ENST00000651693.1_1	chr1	50639977	50641540	ELAVL4-AS1	-	lncRNA	chr1	50489700	50645820	ELAVL4	+	nonsense_mediated_decay	1563	opposite	6892_ID	chr1	50639978	50641540	1563	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
4417	ENST00000442567.2_3	ENST00000659779.1_1	chr3	34566309	34585372	AC018359.1	-	lncRNA	chr3	34250455	34718461	LINC01811	+	lncRNA	19063	opposite	1612_ID	chr3	34566310	34585372	19063	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
4461	ENST00000444210.2_1	ENST00000415009.5_3	chr7	5515434	5519442	AC092171.2	+	lncRNA	chr7	5470965	5553383	FBXL18	-	nonsense_mediated_decay	4008	opposite	3068_ID	chr7	5515435	5519442	4008	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
4473	ENST00000444721.1_3	ENST00000676153.1_1	chr1	240061315	240063172	CHRM3-AS1	-	lncRNA	chr1	239549867	240078750	CHRM3	+	protein_coding	1857	opposite	6648_ID	chr1	240061316	240063172	1857	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
4485	ENST00000445070.1_1	ENST00000606738.3_4	chr1	48283737	48285909	AC096541.1	+	lncRNA	chr1	48226199	48463057	TRABD2B	-	protein_coding	2172	opposite	3271_ID	chr1	48283738	48285909	2172	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
4489	ENST00000445111.1_1	ENST00000611255.5_5	chr10	77502497	77503513	AL731568.1	+	lncRNA	chr10	77191381	78319926	LRMDA	+	protein_coding	81039	same	5898_ID	chr10	77502498	77503513	1016	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
4517	ENST00000445956.1_1	ENST00000395863.8_4	chr20	55789927	55790922	BMP7-AS1	+	lncRNA	chr20	55743808	55841697	BMP7	-	protein_coding	995	opposite	6424_ID	chr20	55789928	55790922	995	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
4522	ENST00000446139.1_3	ENST00000606639.1_1	chr2	56190325	56274461	MIR217HG	-	lncRNA	chr2	56179292	56408787	AC011306.1	+	lncRNA	84136	opposite	8188_ID	chr2	56190326	56274461	84136	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
4524	ENST00000446165.2_1	ENST00000465656.1_3	chr19	12721731	12744654	ZNF791	+	protein_coding	chr19	12694298	12750912	ZNF490	-	processed_transcript	22923	opposite	13073_ID	chr19	12721732	12744654	22923	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
4529	ENST00000446277.1_3	ENST00000272252.10_2	chr2	38895829	38898563	AC074366.1	-	lncRNA	chr2	38893255	38961907	GALM	+	protein_coding	3220	opposite	2578_ID	chr2	38895830	38898563	2734	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
4540	ENST00000446438.1_1	ENST00000357731.10_4	chr1	72036638	72039241	AL354949.1	+	lncRNA	chr1	71861625	72748222	NEGR1	-	protein_coding	2603	opposite	5298_ID	chr1	72036639	72039241	2603	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
4576	ENST00000447396.1_3	ENST00000653890.1_1	chr22	33501368	33502045	Z82198.1	-	lncRNA	chr22	33500315	33541847	LINC01640	+	lncRNA	677	opposite	12939_ID	chr22	33501369	33502045	677	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
4581	ENST00000447630.5_2	ENST00000417572.5_3	chr3	42623331	42636606	SS18L2	+	protein_coding	chr3	42589495	42642572	SEC22C	-	protein_coding	15095	opposite	12548_ID	chr3	42623332	42636606	13275	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
4591	ENST00000447848.1_3	ENST00000655302.1_1	chr6	136128285	136129604	AL133319.1	-	lncRNA	chr6	135818929	136135128	LINC00271	+	lncRNA	1319	opposite	4840_ID	chr6	136128286	136129604	1319	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
4623	ENST00000448834.1_3	ENST00000621345.4_2	chr10	115470439	115479091	AL592546.2	-	lncRNA	chr10	115438920	115490666	CASP7	+	protein_coding	8652	opposite	5818_ID	chr10	115470440	115479091	8652	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
4671	ENST00000450445.1_1	ENST00000380672.9_5	chr9	16726811	16727522	BNC2-AS1	+	lncRNA	chr9	16409500	16870668	BNC2	-	protein_coding	711	opposite	6427_ID	chr9	16726812	16727522	711	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
4674	ENST00000450503.1_1	ENST00000371276.9_7	chr1	55258557	55260578	AC096536.1	+	lncRNA	chr1	55245384	55266996	TTC22	-	protein_coding	2021	opposite	3269_ID	chr1	55258558	55260578	2021	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
4679	ENST00000450640.1_3	ENST00000650928.1_3	chr20	5488520	5490648	LINC01729	-	lncRNA	chr20	5463381	5507252	LINC00654	-	lncRNA	2128	same	7668_ID	chr20	5488521	5490648	2128	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
4685	ENST00000450908.2_1	ENST00000533507.5_1	chr11	47599276	47599829	KF459542.1	+	lncRNA	chr11	47586887	47606113	NDUFS3	+	processed_transcript	553	same	7435_ID	chr11	47599277	47599829	553	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
4712	ENST00000451476.1_1	ENST00000435237.1_1	chr2	21540531	21784185	AC011752.1	+	lncRNA	chr2	21444046	22193831	AC018742.1	+	lncRNA	243654	same	1290_ID	chr2	21540532	21784185	243654	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
4726	ENST00000451656.1_3	ENST00000332674.9_6	chr10	111967607	111968349	AL360182.2	-	lncRNA	chr10	111967362	112047123	MXI1	+	protein_coding	742	opposite	5527_ID	chr10	111967608	111968349	742	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
4743	ENST00000452051.1_1	ENST00000442633.1_3	chr3	196045220	196052441	TM4SF19-AS1	+	lncRNA	chr3	196042952	196065244	TM4SF19-TCTEX1D2	-	nonsense_mediated_decay	7241	opposite	12704_ID	chr3	196045221	196052441	7221	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	6
4780	ENST00000453121.1_3	ENST00000357731.10_4	chr1	72259914	72302695	NEGR1-IT1	-	lncRNA	chr1	71861625	72748222	NEGR1	-	protein_coding	42781	same	9252_ID	chr1	72259915	72302695	42781	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
4817	ENST00000454104.1_1	ENST00000377263.6_4	chr1	9908375	9910212	AL357140.1	+	lncRNA	chr1	9908333	9970327	CTNNBIP1	-	protein_coding	1837	opposite	5420_ID	chr1	9908376	9910212	1837	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
4848	ENST00000455081.2_3	ENST00000233121.7_4	chr2	27207645	27237456	MAPRE3-AS1	-	lncRNA	chr2	27193504	27250087	MAPRE3	+	protein_coding	29837	opposite	7918_ID	chr2	27207646	27237456	29811	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
4864	ENST00000455530.1_1	ENST00000393004.6_3	chr6	76164659	76168616	AL445465.2	+	lncRNA	chr6	76001574	76203345	FILIP1	-	protein_coding	3957	opposite	5627_ID	chr6	76164660	76168616	3957	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
4889	ENST00000456146.1_1	ENST00000420375.5_1	chr3	171612225	171613030	TMEM212-IT1	+	lncRNA	chr3	171561190	171656505	TMEM212	+	nonsense_mediated_decay	805	same	12722_ID	chr3	171612226	171613030	805	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
4892	ENST00000456177.5_1	ENST00000303415.7_4	chr20	1614153	1629118	SIRPG-AS1	+	lncRNA	chr20	1609797	1638425	SIRPG	-	protein_coding	14965	opposite	12066_ID	chr20	1614154	1629118	14965	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
4899	ENST00000456356.2_1	ENST00000409687.5_4	chr9	139957986	139959033	AL807752.3	+	lncRNA	chr9	139956578	139965009	SAPCD2	-	protein_coding	1047	opposite	5909_ID	chr9	139957987	139959033	1047	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
4917	ENST00000456795.1_1	ENST00000602823.1_3	chr6	72038644	72039509	AL136164.1	+	lncRNA	chr6	72004875	72127139	AL136164.2	-	lncRNA	865	opposite	4892_ID	chr6	72038645	72039509	865	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
4939	ENST00000457290.2_1	ENST00000393352.7_3	chr2	105979494	105995296	AC108058.1	+	lncRNA	chr2	105977282	106054960	FHL2	-	protein_coding	15802	opposite	3717_ID	chr2	105979495	105995296	15802	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
4957	ENST00000457775.3_4	ENST00000462691.5_4	chrX	149097790	149099505	HSFX4	+	protein_coding	chrX	149097744	149106653	EOLA2	-	protein_coding	1715	opposite	7309_ID	chrX	149097791	149099505	1715	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	6
4971	ENST00000458331.1_3	ENST00000434753.7_1	chrX	123006475	123007782	XIAP-AS1	-	lncRNA	chrX	122993661	123047826	XIAP	+	protein_coding	1307	opposite	12921_ID	chrX	123006476	123007782	1307	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
5060	ENST00000459176.1	ENST00000325157.7_4	chr22	40270258	40270519	RN7SKP210	-	misc_RNA	chr22	40139048	40289764	ENTHD1	-	protein_coding	261	same	9824_ID	chr22	40270259	40270519	261	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
5090	ENST00000459334.1	ENST00000549278.2_4	chr12	89675999	89676062	RNU7-120P	-	snRNA	chr12	89404477	89703343	LINC02458	-	lncRNA	63	same	11706_ID	chr12	89676000	89676062	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
5094	ENST00000459358.1	ENST00000568007.5_3	chr16	48455037	48455114	AC023818.1	-	miRNA	chr16	48390274	48482313	SIAH1	-	nonsense_mediated_decay	77	same	1975_ID	chr16	48455038	48455114	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
5104	ENST00000459420.1	ENST00000370067.5_2	chr1	107991090	107991177	AC114491.1	-	miRNA	chr1	107683660	108026080	NTNG1	+	protein_coding	87	opposite	3865_ID	chr1	107991091	107991177	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
5139	ENST00000459588.1	ENST00000488683.1_3	chr1	25104363	25104470	RNU6-1208P	-	snRNA	chr1	25071872	25170758	CLIC4	+	nonsense_mediated_decay	107	opposite	10912_ID	chr1	25104364	25104470	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
5153	ENST00000460552.2	ENST00000555989.5_1	chr14	71915405	71915673	RN7SL683P	+	misc_RNA	chr14	71787165	72054482	SIPA1L1	+	processed_transcript	268	same	10364_ID	chr14	71915406	71915673	268	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
5170	ENST00000461895.2	ENST00000658348.1_1	chr3	139328512	139328781	RN7SL724P	-	misc_RNA	chr3	139108641	139501541	AC046134.2	+	lncRNA	269	opposite	10383_ID	chr3	139328513	139328781	269	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
5226	ENST00000465466.1_3	ENST00000482954.5_1	chr7	140395135	140396877	NDUFB2-AS1	-	lncRNA	chr7	140390576	140406446	NDUFB2	+	protein_coding	1742	opposite	9246_ID	chr7	140395136	140396877	1742	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
5260	ENST00000467883.2	ENST00000346618.8_3	chr6	20421811	20422118	RN7SL128P	-	misc_RNA	chr6	20402109	20493945	E2F3	+	protein_coding	307	opposite	9963_ID	chr6	20421812	20422118	307	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
5274	ENST00000468961.2_1	ENST00000469584.5_3	chr3	63846320	63847495	THOC7-AS1	+	lncRNA	chr3	63819546	63849544	THOC7	-	protein_coding	1175	opposite	12681_ID	chr3	63846321	63847495	1175	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
5311	ENST00000470970.2	ENST00000490035.7_4	chr3	115556714	115557005	RN7SL815P	+	misc_RNA	chr3	115521220	116164334	LSAMP	-	protein_coding	291	opposite	10455_ID	chr3	115556715	115557005	291	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
5334	ENST00000472513.1_1	ENST00000649301.1_5	chr3	58558470	58560046	AC119424.1	+	lncRNA	chr3	58549852	58613304	FAM107A	-	protein_coding	1576	opposite	3951_ID	chr3	58558471	58560046	1576	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
5338	ENST00000472655.4_2	ENST00000540802.2_3	chr17	70026701	70037451	LINC01152	+	lncRNA	chr17	70017991	70054214	ROCR	-	lncRNA	11020	opposite	7610_ID	chr17	70026702	70037451	10750	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
5347	ENST00000473305.2	ENST00000648455.1_1	chr7	51784353	51784615	RN7SL292P	+	misc_RNA	chr7	51539413	51797412	AC005999.2	+	lncRNA	262	same	10084_ID	chr7	51784354	51784615	262	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
5351	ENST00000473384.2	ENST00000339082.7_3	chr19	44164651	44164928	RN7SL368P	-	misc_RNA	chr19	44150246	44174318	PLAUR	-	protein_coding	277	same	10133_ID	chr19	44164652	44164928	277	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
5406	ENST00000477126.1_1	ENST00000422209.1_3	chr3	44903395	44907162	TMEM42	+	retained_intron	chr3	44884614	44914868	KIF15	+	nonsense_mediated_decay	3767	same	12735_ID	chr3	44903396	44907162	3767	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
5470	ENST00000481765.2	ENST00000533578.4_1	chr8	11236903	11237200	RN7SL293P	+	misc_RNA	chr8	11225910	11296166	FAM167A-AS1	+	lncRNA	297	same	10085_ID	chr8	11236904	11237200	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
5472	ENST00000481857.2	ENST00000536244.5_1	chr6	36418691	36418978	RN7SL502P	-	misc_RNA	chr6	36410543	36458920	KCTD20	+	protein_coding	287	opposite	10235_ID	chr6	36418692	36418978	287	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
5486	ENST00000482763.2	ENST00000358290.9_4	chr4	88308037	88308326	RN7SL681P	-	misc_RNA	chr4	88257666	88312340	HSD17B11	-	protein_coding	289	same	10363_ID	chr4	88308038	88308326	289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
5519	ENST00000485204.2	ENST00000657392.1_3	chr11	29742945	29743238	RN7SL240P	-	misc_RNA	chr11	29357425	30010875	LINC02755	-	lncRNA	293	same	10047_ID	chr11	29742946	29743238	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
5542	ENST00000486137.1_3	ENST00000668131.1_1	chr3	59450055	59496404	AC126121.2	-	lncRNA	chr3	59035889	59740534	AC126121.3	+	lncRNA	46349	opposite	4022_ID	chr3	59450056	59496404	46349	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
5561	ENST00000488201.1_3	ENST00000478300.6_3	chr3	63409271	63535727	SYNPR-AS1	-	lncRNA	chr3	63263983	63602600	SYNPR	+	protein_coding	126456	opposite	12589_ID	chr3	63409272	63535727	126456	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
5566	ENST00000488710.2	ENST00000636437.1_4	chr6	106731289	106731586	RN7SL47P	-	misc_RNA	chr6	106493297	106773637	ATG5	-	protein_coding	297	same	10212_ID	chr6	106731290	106731586	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
5589	ENST00000490246.2	ENST00000549982.6_2	chr12	93903262	93903544	RN7SL737P	+	misc_RNA	chr12	93861289	93909990	MRPL42	+	protein_coding	282	same	10392_ID	chr12	93903263	93903544	282	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
5608	ENST00000491550.2	ENST00000578921.6_2	chr18	9830328	9830624	RN7SL862P	-	misc_RNA	chr18	9708297	9862548	RAB31	+	protein_coding	296	opposite	10489_ID	chr18	9830329	9830624	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
5611	ENST00000491676.1_1	ENST00000341319.8_4	chr3	183266522	183270114	KLHL6-AS1	+	lncRNA	chr3	183205338	183273494	KLHL6	-	protein_coding	3592	opposite	7455_ID	chr3	183266523	183270114	3592	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
5613	ENST00000491887.2	ENST00000611255.5_5	chr10	78001781	78002071	RN7SL518P	-	misc_RNA	chr10	77191381	78319926	LRMDA	+	protein_coding	290	opposite	10245_ID	chr10	78001782	78002071	290	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
5627	ENST00000492725.1_3	ENST00000286371.8_2	chr3	141637093	141637863	ATP1B3-AS1	-	lncRNA	chr3	141595484	141645391	ATP1B3	+	protein_coding	770	opposite	6368_ID	chr3	141637094	141637863	770	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
5646	ENST00000493781.2	ENST00000249364.9_3	chr7	128401390	128401625	RN7SL81P	+	misc_RNA	chr7	128379412	128413454	CALU	+	protein_coding	235	same	10459_ID	chr7	128401391	128401625	235	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
5647	ENST00000493791.2	ENST00000328879.9_4	chr22	20836223	20836497	RN7SL812P	-	misc_RNA	chr22	20795805	20850082	KLHL22	-	protein_coding	274	same	10452_ID	chr22	20836224	20836497	274	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
5661	ENST00000495357.1_1	ENST00000471307.6_8	chr3	180397871	180418237	CCDC39-AS1	+	lncRNA	chr3	180379659	180588721	CCDC39	-	lncRNA	20366	opposite	6574_ID	chr3	180397872	180418237	20366	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
5665	ENST00000495651.2	ENST00000471307.6_8	chr3	180454195	180454491	RN7SL229P	-	misc_RNA	chr3	180379659	180588721	CCDC39	-	lncRNA	296	same	10035_ID	chr3	180454196	180454491	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
5667	ENST00000495675.2	ENST00000655920.1_1	chr14	97996227	97996510	RN7SL710P	-	misc_RNA	chr14	97893407	98047940	LINC02325	+	lncRNA	283	opposite	10378_ID	chr14	97996228	97996510	283	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
5685	ENST00000497258.1_4	ENST00000668131.1_1	chr3	59365749	59374430	AC138057.1	-	lncRNA	chr3	59035889	59740534	AC126121.3	+	lncRNA	8681	opposite	4177_ID	chr3	59365750	59374430	8681	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
5689	ENST00000497468.2	ENST00000261427.10_2	chr4	39762619	39762919	RN7SL558P	+	misc_RNA	chr4	39699755	39784412	UBE2K	+	protein_coding	300	same	10268_ID	chr4	39762620	39762919	300	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
5712	ENST00000498758.2	ENST00000252440.11_6	chr19	11626863	11627150	RN7SL833P	-	misc_RNA	chr19	11616743	11639952	ECSIT	-	protein_coding	287	same	10465_ID	chr19	11626864	11627150	287	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
5719	ENST00000499096.2_3	ENST00000315073.10_2	chr5	180651645	180657685	AC008443.1	-	lncRNA	chr5	180650280	180662808	TRIM41	+	protein_coding	6040	opposite	731_ID	chr5	180651646	180657685	6040	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
5745	ENST00000501322.2_3	ENST00000332517.4_2	chr4	189061975	189064533	AC138781.1	-	lncRNA	chr4	189060594	189068897	TRIML1	+	protein_coding	2558	opposite	4192_ID	chr4	189061976	189064533	2558	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
5751	ENST00000501541.1_3	ENST00000526408.1_1	chr11	43965336	43968756	AC087521.1	-	lncRNA	chr11	43942625	44022707	AC087521.3	+	lncRNA	3420	opposite	2830_ID	chr11	43965337	43968756	3420	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
5759	ENST00000502275.1	ENST00000647105.1_1	chr5	124705857	124706617	RP11-395P13.3	-	lincRNA	chr5	124229052	124921977	LINC02240	+	lncRNA	760	opposite	11901_ID	chr5	124705858	124706617	760	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
5799	ENST00000503877.1_1	ENST00000660173.1_3	chr5	117618269	117620477	LINC02148	+	lncRNA	chr5	117335947	117897783	LINC02208	-	lncRNA	2208	opposite	7735_ID	chr5	117618270	117620477	2208	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
5817	ENST00000504520.6_3	ENST00000503210.5_4	chr4	83814161	83822113	THAP9-AS1	-	lncRNA	chr4	83800040	83822319	SEC31A	-	protein_coding	7952	same	12675_ID	chr4	83814162	83822113	7952	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
5864	ENST00000505796.1_3	ENST00000504578.2_1	chr5	96559074	96563661	AC008883.2	-	lncRNA	chr5	96424778	96772921	LIX1-AS1	+	lncRNA	4587	opposite	826_ID	chr5	96559075	96563661	4587	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
5867	ENST00000505978.1_1	ENST00000514726.1_3	chr17	49410039	49411451	AC005823.2	+	lncRNA	chr17	49389969	49412526	LINC02071	-	lncRNA	1412	opposite	361_ID	chr17	49410040	49411451	1412	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
5870	ENST00000506059.1_3	ENST00000507435.1_3	chr5	4775588	4805882	AC026719.1	-	lncRNA	chr5	4452042	4866334	AC106799.2	-	lncRNA	30294	same	2165_ID	chr5	4775589	4805882	30294	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
5880	ENST00000506392.1_1	ENST00000514115.6_4	chr5	113911737	113915667	LINC01957	+	lncRNA	chr5	113811035	114004107	AC010230.1	-	lncRNA	3930	opposite	7706_ID	chr5	113911738	113915667	3930	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
5888	ENST00000506562.1_3	ENST00000504578.2_1	chr5	96523793	96537584	AC008883.1	-	lncRNA	chr5	96424778	96772921	LIX1-AS1	+	lncRNA	13791	opposite	824_ID	chr5	96523794	96537584	13791	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
5905	ENST00000506934.1_3	ENST00000658348.1_1	chr3	139407244	139408184	AC110716.1	-	lncRNA	chr3	139108641	139501541	AC046134.2	+	lncRNA	940	opposite	3792_ID	chr3	139407245	139408184	940	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
5906	ENST00000507011.1_3	ENST00000507870.1_1	chr4	178650791	178829016	LINC01099	-	lncRNA	chr4	178649910	178911904	LINC01098	+	lncRNA	178299	opposite	7601_ID	chr4	178650792	178829016	178225	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
5917	ENST00000507341.1	ENST00000647105.1_1	chr5	124704260	124704842	RP11-395P13.2	+	lincRNA	chr5	124229052	124921977	LINC02240	+	lncRNA	582	same	11898_ID	chr5	124704261	124704842	582	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
5922	ENST00000507509.1_3	ENST00000514853.3_3	chr5	127174177	127193496	AC068658.1	-	lncRNA	chr5	127039080	127277326	CCDC192	+	protein_coding	19319	opposite	2431_ID	chr5	127174178	127193496	19319	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
5930	ENST00000507813.1_3	ENST00000503424.1_1	chr5	115638050	115639831	AC018752.1	-	lncRNA	chr5	115628153	115748459	COMMD10	+	processed_transcript	1781	opposite	1657_ID	chr5	115638051	115639831	1781	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
5961	ENST00000508936.1_3	ENST00000302085.9_3	chr4	146418224	146424123	SMAD1-AS2	-	lncRNA	chr4	146403004	146480328	SMAD1	+	protein_coding	5899	opposite	12120_ID	chr4	146418225	146424123	5899	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
5967	ENST00000509010.1	ENST00000647105.1_1	chr5	124731071	124731673	RP11-395P13.6	-	lincRNA	chr5	124229052	124921977	LINC02240	+	lncRNA	602	opposite	11906_ID	chr5	124731072	124731673	602	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
5984	ENST00000509655.2_3	ENST00000519499.2_5	chr5	156790389	156792509	AC016571.1	-	lncRNA	chr5	156768603	156887108	AC008676.3	-	protein_coding	2120	same	1535_ID	chr5	156790390	156792509	2120	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
5997	ENST00000510004.2_1	ENST00000657766.1_3	chr5	123731295	123736348	AC016556.1	+	lncRNA	chr5	123467065	123774269	LINC01170	-	lncRNA	5053	opposite	1534_ID	chr5	123731296	123736348	5053	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
6001	ENST00000510180.1_1	ENST00000671145.1_3	chr5	70741442	70742396	AC145141.1	+	lncRNA	chr5	70633008	70742599	LINC02197	-	lncRNA	954	opposite	4230_ID	chr5	70741443	70742396	954	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
6043	ENST00000511583.1	ENST00000647105.1_1	chr5	124718551	124719148	RP11-395P13.5	-	lincRNA	chr5	124229052	124921977	LINC02240	+	lncRNA	597	opposite	11904_ID	chr5	124718552	124719148	597	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
6047	ENST00000511631.1	ENST00000647105.1_1	chr5	124712526	124713132	RP11-395P13.4	+	lincRNA	chr5	124229052	124921977	LINC02240	+	lncRNA	606	same	11903_ID	chr5	124712527	124713132	606	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
6059	ENST00000511897.5_1	ENST00000256404.8_4	chr8	22735496	22745535	AC037441.1	+	lncRNA	chr8	22570763	22785427	PEBP4	-	protein_coding	10051	opposite	2279_ID	chr8	22735497	22745535	10039	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
6063	ENST00000511956.1_5	ENST00000658348.1_1	chr3	139173613	139199565	RBP2	-	protein_coding	chr3	139108641	139501541	AC046134.2	+	lncRNA	27864	opposite	9723_ID	chr3	139173614	139199565	25952	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
6080	ENST00000512398.1_1	ENST00000658348.1_1	chr3	139185271	139185637	AC097103.1	+	lncRNA	chr3	139108641	139501541	AC046134.2	+	lncRNA	28272	same	3304_ID	chr3	139185272	139185637	366	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
6102	ENST00000513067.1_3	ENST00000503611.5_1	chr4	159120256	159121594	AC098679.1	-	lncRNA	chr4	159091903	159124029	FAM198B-AS1	+	lncRNA	1338	opposite	3339_ID	chr4	159120257	159121594	1338	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	6
6112	ENST00000513386.1_3	ENST00000667197.1_1	chr5	60958976	60994259	AC026746.1	-	lncRNA	chr5	60933592	61089228	C5orf64	+	lncRNA	39959	opposite	2168_ID	chr5	60958977	60994259	35283	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
6124	ENST00000513802.1_1	ENST00000324194.12_4	chr3	140691585	140692097	AC108727.1	+	lncRNA	chr3	140660677	140699837	SLC25A36	+	protein_coding	512	same	3745_ID	chr3	140691586	140692097	512	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
6145	ENST00000514401.1_2	ENST00000507932.1_3	chr4	14392062	14395616	AC006296.1	+	lncRNA	chr4	14384746	14410702	AC006296.2	-	lncRNA	3554	opposite	450_ID	chr4	14392063	14395616	3554	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
6162	ENST00000514867.1_1	ENST00000508645.5_4	chr5	127999670	128078522	AC008588.1	+	lncRNA	chr5	127873705	128351637	SLC27A6	+	protein_coding	78852	same	751_ID	chr5	127999671	128078522	78852	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
6188	ENST00000515789.1_1	ENST00000304385.8_5	chr4	153587519	153591259	AC106882.1	+	lncRNA	chr4	153539779	153601149	TMEM154	-	protein_coding	3740	opposite	3672_ID	chr4	153587520	153591259	3740	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
6191	ENST00000515860.1_1	ENST00000663528.1_1	chr4	139346676	139358023	LINC00500	+	lncRNA	chr4	139230928	139584557	LINC00499	+	lncRNA	11347	same	7557_ID	chr4	139346677	139358023	11347	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
6235	ENST00000515997.1	ENST00000438552.6_5	chr20	2443607	2443683	SNORD119	-	snoRNA	chr20	2442279	2451499	SNRPB	-	protein_coding	76	same	12359_ID	chr20	2443608	2443683	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
6251	ENST00000516056.1	ENST00000308249.4_2	chr17	56913259	56913355	RNU6-518P	+	snRNA	chr17	56833214	57062540	PPM1E	+	protein_coding	96	same	11304_ID	chr17	56913260	56913355	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
6262	ENST00000516080.1	ENST00000340553.8_3	chr2	48567825	48567965	RNU4-49P	-	snRNA	chr2	48541820	48606434	FOXN2	+	protein_coding	140	opposite	10687_ID	chr2	48567826	48567965	140	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
6268	ENST00000516097.1	ENST00000671069.1_1	chr4	105895818	105895928	RNU6-351P	+	snRNA	chr4	105828421	106041157	AC096577.1	+	lncRNA	110	same	11174_ID	chr4	105895819	105895928	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
6308	ENST00000516210.1	ENST00000395514.5_3	chr14	55325932	55326048	RNU6ATAC9P	+	snRNA	chr14	55308725	55369542	GCH1	-	protein_coding	116	opposite	11687_ID	chr14	55325933	55326048	116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
6400	ENST00000516479.1	ENST00000340827.4_2	chr15	45265755	45265859	RNU6-966P	+	snRNA	chr15	45248884	45271427	TERB2	+	protein_coding	104	same	11642_ID	chr15	45265756	45265859	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
6402	ENST00000516485.1	ENST00000486740.6_2	chrX	101933634	101933741	RNU6-589P	-	snRNA	chrX	101854464	101969599	ARMCX5-GPRASP2	+	lncRNA	107	opposite	11360_ID	chrX	101933635	101933741	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
6453	ENST00000516635.1	ENST00000636437.1_4	chr6	106752050	106752161	RNU6-344P	+	snRNA	chr6	106493297	106773637	ATG5	-	protein_coding	111	opposite	11170_ID	chr6	106752051	106752161	111	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
6463	ENST00000516666.1	ENST00000340827.4_2	chr15	45255027	45255131	RNU6-1332P	+	snRNA	chr15	45248884	45271427	TERB2	+	protein_coding	104	same	11015_ID	chr15	45255028	45255131	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
6478	ENST00000516706.1	ENST00000374358.5_2	chr1	25667461	25667525	RNU6-1171P	+	snRNA	chr1	25664824	25688852	TMEM50A	+	protein_coding	64	same	10877_ID	chr1	25667462	25667525	64	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
6512	ENST00000516811.1	ENST00000618156.5_4	chr3	195249884	195250019	RNU6ATAC24P	-	snRNA	chr3	195241223	195270148	PPP1R2	-	protein_coding	135	same	11670_ID	chr3	195249885	195250019	135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
6515	ENST00000516818.1	ENST00000434753.7_1	chrX	123008308	123008415	RNU6-122P	+	snRNA	chrX	122993661	123047826	XIAP	+	protein_coding	107	same	10928_ID	chrX	123008309	123008415	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
6524	ENST00000516836.1	ENST00000357484.10_4	chr15	90440807	90440869	RNU7-111P	+	snRNA	chr15	90438237	90456184	ARPIN	-	protein_coding	62	opposite	11700_ID	chr15	90440808	90440869	62	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	6
6549	ENST00000516929.1	ENST00000576263.5_1	chr6	45613840	45613912	RNU6-515P	+	snRNA	chr6	45296463	45632086	RUNX2	+	protein_coding	72	same	11300_ID	chr6	45613841	45613912	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
6586	ENST00000517014.1	ENST00000651272.1_1	chr12	90147835	90147929	RNU6-148P	+	snRNA	chr12	90105824	90494540	AC009522.1	+	lncRNA	94	same	11033_ID	chr12	90147836	90147929	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
6632	ENST00000517125.1	ENST00000607452.6_3	chr2	54394080	54394144	RNU7-172P	-	snRNA	chr2	54198249	54532437	ACYP2	+	protein_coding	64	opposite	11743_ID	chr2	54394081	54394144	64	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
6636	ENST00000517138.1	ENST00000311772.10_2	chr1	28160911	28161077	SCARNA1	+	snoRNA	chr1	28157292	28178187	PPP1R8	+	protein_coding	166	same	11990_ID	chr1	28160912	28161077	166	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
6637	ENST00000517140.1	ENST00000346618.8_3	chr6	20422548	20422632	AL136303.1	+	miRNA	chr6	20402109	20493945	E2F3	+	protein_coding	84	same	4900_ID	chr6	20422549	20422632	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
6649	ENST00000517173.1	ENST00000457714.5_1	chr3	173775430	173775654	RN7SKP234	+	misc_RNA	chr3	173116237	174004434	NLGN1	+	protein_coding	224	same	9841_ID	chr3	173775431	173775654	224	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
6684	ENST00000517248.1	ENST00000500779.2_1	chr5	111055465	111055758	RN7SKP57	-	misc_RNA	chr5	110847923	111075423	STARD4-AS1	+	lncRNA	293	opposite	9907_ID	chr5	111055466	111055758	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
6695	ENST00000517266.1	ENST00000402312.7_1	chr14	100953880	100954124	RN7SKP92	+	misc_RNA	chr14	100842775	100996640	WDR25	+	protein_coding	244	same	9935_ID	chr14	100953881	100954124	244	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
6697	ENST00000517272.1	ENST00000654635.1_3	chr3	8406214	8406334	RNU4ATAC17P	-	snRNA	chr3	7992949	8543358	LMCD1-AS1	-	lncRNA	120	same	10727_ID	chr3	8406215	8406334	120	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
6721	ENST00000517511.1_1	ENST00000377888.8_7	chr5	148024249	148025953	AC008627.1	-	lncRNA	chr5	147861109	148034090	HTR4	-	protein_coding	1704	same	759_ID	chr5	148024250	148025953	1704	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
6747	ENST00000518362.1_3	ENST00000521788.1_1	chr8	120075180	120081021	AC107953.2	-	lncRNA	chr8	120007690	120116106	COLEC10	+	processed_transcript	5841	opposite	3705_ID	chr8	120075181	120081021	5841	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
6764	ENST00000518598.1_3	ENST00000523184.5_1	chr8	96083959	96100152	AC068189.1	-	lncRNA	chr8	96060693	96128683	NDUFAF6	+	processed_transcript	16193	opposite	2393_ID	chr8	96083960	96100152	16193	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
6767	ENST00000518749.1_1	ENST00000395923.5_3	chr8	102698774	102701321	AP000426.1	+	lncRNA	chr8	102698770	103137135	NCALD	-	protein_coding	2547	opposite	5986_ID	chr8	102698775	102701321	2547	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
6810	ENST00000520224.2_4	ENST00000645463.1_1	chr8	127778440	127859226	AC024382.1	-	lncRNA	chr8	127570137	128305107	PCAT1	+	lncRNA	80786	opposite	2015_ID	chr8	127778441	127859226	80786	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
6855	ENST00000521714.1_3	ENST00000523063.5_1	chr8	33831218	33867113	AF279873.4	-	lncRNA	chr8	33462373	33896003	AF279873.3	+	lncRNA	35895	opposite	4407_ID	chr8	33831219	33867113	35895	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
6871	ENST00000522383.1_3	ENST00000536633.2_2	chr8	124193877	124195028	AC068228.1	-	lncRNA	chr8	124191286	124222319	FAM83A	+	protein_coding	1151	opposite	2396_ID	chr8	124193878	124195028	1151	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
6888	ENST00000522805.1_3	ENST00000256404.8_4	chr8	22752946	22755326	AC037441.2	-	lncRNA	chr8	22570763	22785427	PEBP4	-	protein_coding	2380	same	2280_ID	chr8	22752947	22755326	2380	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
6953	ENST00000525361.5_3	ENST00000534396.5_4	chr11	82612739	82669319	DDIAS	+	protein_coding	chr11	82560955	82681626	PRCP	-	protein_coding	58303	opposite	6779_ID	chr11	82612740	82669319	56580	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
6956	ENST00000525424.1_1	ENST00000427140.5_1	chr20	57169472	57179029	AL050327.1	+	lncRNA	chr20	57090434	57194944	APCDD1L-DT	+	lncRNA	10811	same	4653_ID	chr20	57169473	57179029	9557	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
6972	ENST00000526269.2_3	ENST00000344954.10_1	chr11	128561566	128565918	SENCR	-	lncRNA	chr11	128556429	128683161	FLI1	+	protein_coding	4352	opposite	12035_ID	chr11	128561567	128565918	4352	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
7005	ENST00000527080.1_4	ENST00000529252.2_1	chr8	7829182	7830775	USP17L8	-	protein_coding	chr8	7812535	7866277	FAM66E	+	lncRNA	1593	opposite	12881_ID	chr8	7829183	7830775	1593	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
7012	ENST00000527318.1_3	ENST00000289957.3_2	chr8	42560725	42577089	AC103843.1	-	lncRNA	chr8	42552508	42592550	CHRNB3	+	protein_coding	16364	opposite	3477_ID	chr8	42560726	42577089	16364	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
7022	ENST00000527727.1_1	ENST00000657392.1_3	chr11	29467033	29478940	AC090124.1	+	lncRNA	chr11	29357425	30010875	LINC02755	-	lncRNA	11907	opposite	2871_ID	chr11	29467034	29478940	11907	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
7025	ENST00000527804.1_1	ENST00000302251.9_3	chr11	103816275	103817274	AP003043.1	+	lncRNA	chr11	103777916	104035107	PDGFD	-	protein_coding	999	opposite	6230_ID	chr11	103816276	103817274	999	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
7062	ENST00000529078.1_1	ENST00000448418.6_3	chr11	30447098	30450815	AL353699.1	+	lncRNA	chr11	30406039	30607828	MPPED2	-	protein_coding	3717	opposite	5256_ID	chr11	30447099	30450815	3717	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
7093	ENST00000530249.1_1	ENST00000657392.1_3	chr11	29735455	29903261	AC107973.1	+	lncRNA	chr11	29357425	30010875	LINC02755	-	lncRNA	167806	opposite	3708_ID	chr11	29735456	29903261	167806	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
7100	ENST00000530484.1_3	ENST00000529252.2_1	chr8	7833914	7835507	USP17L3	-	protein_coding	chr8	7812535	7866277	FAM66E	+	lncRNA	1593	opposite	12876_ID	chr8	7833915	7835507	1593	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
7138	ENST00000531663.1_1	ENST00000020926.8_4	chr11	45275434	45276134	AC103681.1	+	lncRNA	chr11	45261852	45307892	SYT13	-	protein_coding	766	opposite	3453_ID	chr11	45275435	45276134	700	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
7145	ENST00000531850.2_1	ENST00000532119.5_5	chr11	117689157	117692707	AP000757.2	+	lncRNA	chr11	117672444	117698783	FXYD2	-	protein_coding	3550	opposite	6022_ID	chr11	117689158	117692707	3550	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	6
7159	ENST00000532431.1	ENST00000328879.9_4	chr22	20829489	20829598	KLHL22-IT1	-	misc_RNA	chr22	20795805	20850082	KLHL22	-	protein_coding	109	same	7453_ID	chr22	20829490	20829598	109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
7172	ENST00000532866.1_3	ENST00000298317.9_5	chr11	126078505	126078922	AP001893.1	-	lncRNA	chr11	126071990	126081545	RPUSD4	-	protein_coding	417	same	6165_ID	chr11	126078506	126078922	417	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
7230	ENST00000535746.5_1	ENST00000669735.1_1	chr12	8474471	8482210	AC092745.1	+	lncRNA	chr12	8395742	8494644	AC092745.5	+	lncRNA	7739	same	3138_ID	chr12	8474472	8482210	7739	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
7248	ENST00000537055.4_4	ENST00000650950.1_1	chr19	57173347	57183125	ZNF835	-	protein_coding	chr19	57106680	57310970	ZIM2-AS1	+	lncRNA	9804	opposite	13078_ID	chr19	57173348	57183125	9778	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
7255	ENST00000537353.2	ENST00000337190.7_5	chr4	2251803	2251883	MIR4800	-	miRNA	chr4	2249158	2263836	MXD4	-	protein_coding	80	same	8784_ID	chr4	2251804	2251883	80	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
7267	ENST00000538113.1_1	ENST00000545234.6_4	chr12	28111449	28122746	AC008011.2	+	lncRNA	chr12	28111016	28125666	PTHLH	-	protein_coding	11297	opposite	679_ID	chr12	28111450	28122746	11297	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	4	6
7325	ENST00000541885.1_4	ENST00000637125.1_1	chr12	64900945	64927418	AC078962.2	-	lncRNA	chr12	64900780	65088692	RASSF3	+	protein_coding	26473	opposite	2612_ID	chr12	64900946	64927418	26473	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
7331	ENST00000542029.1_7	ENST00000591482.1_1	chr17	26696702	26700110	VTN	-	protein_coding	chr17	26684669	26708716	AC002094.1	+	lncRNA	5806	opposite	12898_ID	chr17	26696703	26700110	3408	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
7344	ENST00000543215.5_1	ENST00000644134.1_3	chr1	192605267	192629436	RGS13	+	protein_coding	chr1	192460581	192894845	AL390957.1	-	lncRNA	24174	opposite	9741_ID	chr1	192605268	192629436	24169	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
7372	ENST00000544380.1_1	ENST00000536588.1_4	chr12	4754661	4757193	AC005832.1	+	lncRNA	chr12	4714109	4771809	AC005832.4	+	nonsense_mediated_decay	2532	same	366_ID	chr12	4754662	4757193	2532	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
7423	ENST00000546910.6_6	ENST00000465654.5_1	chr7	141627156	141646774	CLEC5A	-	protein_coding	chr7	141607612	141720880	MGAM	+	protein_coding	19651	opposite	6663_ID	chr7	141627157	141646774	19618	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
7434	ENST00000547094.1_1	ENST00000651272.1_1	chr12	90341469	90343503	LINC02399	+	lncRNA	chr12	90105824	90494540	AC009522.1	+	lncRNA	2034	same	7771_ID	chr12	90341470	90343503	2034	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
7477	ENST00000548901.1_1	ENST00000261402.6_3	chr12	106496940	106499943	AC011595.1	+	lncRNA	chr12	106457117	106533811	NUAK1	-	protein_coding	3003	opposite	1268_ID	chr12	106496941	106499943	3003	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
7515	ENST00000550840.1_3	ENST00000551790.5_1	chr12	56512751	56513723	AC034102.7	-	lncRNA	chr12	56512033	56524883	ESYT1	+	protein_coding	972	opposite	2246_ID	chr12	56512752	56513723	972	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
7519	ENST00000550947.1_3	ENST00000551790.5_1	chr12	56513816	56523403	AC034102.6	-	lncRNA	chr12	56512033	56524883	ESYT1	+	protein_coding	9587	opposite	2245_ID	chr12	56513817	56523403	9587	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	3	6
7574	ENST00000553477.1_3	ENST00000557481.6_3	chr15	94380839	94396210	AC103996.3	-	lncRNA	chr15	94261770	94443828	LINC01579	-	lncRNA	15371	same	3497_ID	chr15	94380840	94396210	15371	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
7591	ENST00000553990.1_3	ENST00000568344.5_1	chr14	62536235	62547872	AL390816.1	-	lncRNA	chr14	62462540	62579268	SYT16	+	protein_coding	11637	opposite	5562_ID	chr14	62536236	62547872	11637	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
7594	ENST00000554010.1_1	ENST00000429593.6_3	chr14	23825614	23826212	AL049829.2	+	lncRNA	chr14	23825611	23834842	EFS	-	protein_coding	598	opposite	4640_ID	chr14	23825615	23826212	598	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
7600	ENST00000554071.1_1	ENST00000345097.8_5	chr14	90042559	90043821	FOXN3-AS2	+	lncRNA	chr14	89622515	90085474	FOXN3	-	protein_coding	1262	opposite	7064_ID	chr14	90042560	90043821	1262	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
7603	ENST00000554205.1_1	ENST00000557070.1_3	chr14	88034524	88035743	AL135746.1	+	lncRNA	chr14	87819413	88039366	LINC02296	-	lncRNA	1219	opposite	4870_ID	chr14	88034525	88035743	1219	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
7645	ENST00000555562.1_1	ENST00000345097.8_5	chr14	89883697	89886137	FOXN3-AS1	+	lncRNA	chr14	89622515	90085474	FOXN3	-	protein_coding	2440	opposite	7062_ID	chr14	89883698	89886137	2440	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
7660	ENST00000555969.1_1	ENST00000216410.8_4	chr14	53241954	53244458	AL139317.3	+	lncRNA	chr14	53241910	53258325	GNPNAT1	-	protein_coding	2504	opposite	5034_ID	chr14	53241955	53244458	2504	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
7664	ENST00000556080.2_2	ENST00000402312.7_1	chr14	100872935	100875265	AL135838.1	+	lncRNA	chr14	100842775	100996640	WDR25	+	protein_coding	2330	same	4875_ID	chr14	100872936	100875265	2330	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
7674	ENST00000556383.1_1	ENST00000345097.8_5	chr14	89866338	89875813	AL356805.1	+	lncRNA	chr14	89622515	90085474	FOXN3	-	protein_coding	9475	opposite	5403_ID	chr14	89866339	89875813	9475	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
7686	ENST00000556763.1_1	ENST00000557481.6_3	chr15	94425310	94429972	AC103996.2	+	lncRNA	chr15	94261770	94443828	LINC01579	-	lncRNA	4662	opposite	3495_ID	chr15	94425311	94429972	4662	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
7691	ENST00000556926.1_1	ENST00000345097.8_5	chr14	89821403	89822915	AL357093.1	+	lncRNA	chr14	89622515	90085474	FOXN3	-	protein_coding	1512	opposite	5416_ID	chr14	89821404	89822915	1512	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
7716	ENST00000557733.1_1	ENST00000380243.9_5	chr14	99978837	99979913	AL110504.1	+	lncRNA	chr14	99966526	100070544	CCDC85C	-	protein_coding	1076	opposite	4721_ID	chr14	99978838	99979913	1076	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	6
7757	ENST00000558478.1_1	ENST00000216799.9_4	chr14	24608653	24609653	AL136295.2	+	lncRNA	chr14	24608173	24610800	EMC9	-	protein_coding	1000	opposite	4896_ID	chr14	24608654	24609653	1000	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
7760	ENST00000558601.1_3	ENST00000561234.5_5	chr15	40745642	40746838	AC013356.3	-	lncRNA	chr15	40731919	40760428	BAHD1	+	protein_coding	1196	opposite	1434_ID	chr15	40745643	40746838	1196	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
7761	ENST00000558641.2_1	ENST00000647806.1_1	chr15	101402047	101414574	AC015712.4	+	lncRNA	chr15	101390035	101417041	AC015712.6	+	lncRNA	12527	same	1471_ID	chr15	101402048	101414574	12527	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	6
7797	ENST00000559539.1_3	ENST00000290759.9_2	chr15	76631949	76634404	AC027243.1	-	lncRNA	chr15	76629113	76634816	ISL2	+	protein_coding	2455	opposite	2198_ID	chr15	76631950	76634404	2455	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	6
7885	ENST00000561632.2_1	ENST00000228567.7_4	chr12	33557806	33558831	AC023158.1	-	lncRNA	chr12	33527172	33592754	SYT10	-	protein_coding	7740	same	1937_ID	chr12	33557807	33558831	1025	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
7896	ENST00000561816.1_1	ENST00000657392.1_3	chr11	30001659	30003939	LINC01616	-	lncRNA	chr11	29357425	30010875	LINC02755	-	lncRNA	2280	same	7660_ID	chr11	30001660	30003939	2280	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
7898	ENST00000561847.2_1	ENST00000567020.6_3	chr16	2526558	2532174	AC106820.4	+	lncRNA	chr16	2525051	2555735	TBC1D24	+	protein_coding	5616	same	3655_ID	chr16	2526559	2532174	5616	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
7905	ENST00000561956.1_3	ENST00000283882.4_4	chr16	75413715	75415158	AC009054.2	-	lncRNA	chr16	75327607	75467401	CFDP1	-	protein_coding	1443	same	849_ID	chr16	75413716	75415158	1443	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
7922	ENST00000562422.1_1	ENST00000336278.8_1	chr16	69274451	69275832	AC026474.1	+	lncRNA	chr16	69221031	69342955	SNTB2	+	protein_coding	1381	same	2159_ID	chr16	69274452	69275832	1381	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
7934	ENST00000562632.1_1	ENST00000642024.1_1	chr5	25319942	25321455	AC106754.1	+	lncRNA	chr5	25190518	25324495	LINC02211	+	lncRNA	1513	same	3645_ID	chr5	25319943	25321455	1513	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
7972	ENST00000563175.1_3	ENST00000219345.10_3	chr16	68290064	68294346	AC020978.2	-	lncRNA	chr16	68279275	68294961	PLA2G15	+	protein_coding	4282	opposite	1767_ID	chr16	68290065	68294346	4282	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	6
8000	ENST00000563684.1_1	ENST00000570137.7_5	chr16	80661447	80662276	AC092332.1	-	lncRNA	chr16	80631803	80838495	CDYL2	-	protein_coding	38013	same	3078_ID	chr16	80661448	80662276	829	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
8007	ENST00000563807.1_3	ENST00000576263.5_1	chr6	45541082	45544507	RUNX2-AS1	-	lncRNA	chr6	45296463	45632086	RUNX2	+	protein_coding	3425	opposite	11980_ID	chr6	45541083	45544507	3425	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
8009	ENST00000563865.1_1	ENST00000658348.1_1	chr3	139397461	139401406	AC110716.2	-	lncRNA	chr3	139108641	139501541	AC046134.2	+	lncRNA	3945	opposite	3793_ID	chr3	139397462	139401406	3945	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
8014	ENST00000563994.1_1	ENST00000564124.5_3	chr16	48593571	48621314	AC026470.2	+	lncRNA	chr16	48580007	48654059	N4BP1	-	retained_intron	27743	opposite	2156_ID	chr16	48593572	48621314	27743	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
8031	ENST00000564417.1_1	ENST00000615949.6_3	chr10	38080507	38080865	AL132657.2	+	lncRNA	chr10	38065453	38146125	ZNF248	-	protein_coding	358	opposite	4811_ID	chr10	38080508	38080865	358	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
8042	ENST00000564672.1_1	ENST00000262498.8_4	chr16	58150788	58153257	AC026771.1	+	lncRNA	chr16	58147495	58163285	CFAP20	-	protein_coding	2469	opposite	2171_ID	chr16	58150789	58153257	2469	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
8068	ENST00000565153.2_2	ENST00000652959.1_3	chr16	52640933	52647858	AC026462.3	+	lncRNA	chr16	52586093	52686044	CASC16	-	lncRNA	7635	opposite	2151_ID	chr16	52640934	52647858	6925	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
8092	ENST00000565709.1_1	ENST00000570258.5_4	chr16	2290487	2291819	AC009065.8	+	lncRNA	chr16	2289940	2302301	ECI1	-	protein_coding	1332	opposite	857_ID	chr16	2290488	2291819	1332	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
8096	ENST00000565771.1_3	ENST00000652959.1_3	chr16	52641673	52642070	AC026462.2	-	lncRNA	chr16	52586093	52686044	CASC16	-	lncRNA	397	same	2150_ID	chr16	52641674	52642070	397	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
8134	ENST00000566537.1_3	ENST00000545521.5_1	chr16	29817816	29819053	AC009133.2	-	lncRNA	chr16	29817426	29822481	MAZ	+	protein_coding	1237	opposite	897_ID	chr16	29817817	29819053	1237	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
8157	ENST00000566996.2_1	ENST00000300087.7_2	chr16	23681331	23684994	AC008870.1	+	lncRNA	chr16	23652786	23688793	DCTN5	+	protein_coding	5489	same	818_ID	chr16	23681332	23684994	3663	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
8165	ENST00000567141.1_1	ENST00000299565.9_1	chr15	78881464	78883618	AC027228.2	-	lncRNA	chr15	78857861	78887611	CHRNA5	+	protein_coding	2154	opposite	2196_ID	chr15	78881465	78883618	2154	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	6
8173	ENST00000567236.1_3	ENST00000564808.6_2	chr16	19131297	19132951	AC099518.5	-	lncRNA	chr16	19125323	19184900	AC099518.3	+	lncRNA	1654	opposite	3374_ID	chr16	19131298	19132951	1654	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
8196	ENST00000567865.1_1	ENST00000482852.5_1	chr15	58012492	58013126	AC090651.1	+	lncRNA	chr15	57998909	58074960	POLR2M	+	nonsense_mediated_decay	634	same	2926_ID	chr15	58012493	58013126	634	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
8210	ENST00000568140.1_3	ENST00000283882.4_4	chr16	75355787	75358946	AC009054.1	-	lncRNA	chr16	75327607	75467401	CFDP1	-	protein_coding	3159	same	848_ID	chr16	75355788	75358946	3159	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
8218	ENST00000568262.2_1	ENST00000567212.5_2	chr16	23579993	23581017	AC008870.2	+	lncRNA	chr16	23569041	23585708	UBFD1	+	protein_coding	1024	same	819_ID	chr16	23579994	23581017	1024	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
8231	ENST00000568437.1_1	ENST00000570137.7_5	chr16	80770256	80776202	AC099313.1	+	lncRNA	chr16	80631803	80838495	CDYL2	-	protein_coding	5946	opposite	3353_ID	chr16	80770257	80776202	5946	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
8259	ENST00000569200.1_3	ENST00000568638.1_1	chr16	84329103	84330591	AC010551.2	-	lncRNA	chr16	84328451	84363446	WFDC1	+	protein_coding	1488	opposite	1110_ID	chr16	84329104	84330591	1488	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
8329	ENST00000571775.1_1	ENST00000174618.5_4	chr17	2288140	2289958	AC006435.1	+	lncRNA	chr17	2287366	2304354	MNT	-	protein_coding	1818	opposite	459_ID	chr17	2288141	2289958	1818	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
8333	ENST00000572187.1_1	ENST00000240316.5_4	chr17	55017292	55018636	AC004584.1	+	lncRNA	chr17	55015559	55038411	COIL	-	protein_coding	1344	opposite	141_ID	chr17	55017293	55018636	1344	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
8364	ENST00000573748.5_1	ENST00000650609.1_3	chr7	74940472	74946406	AC211476.3	+	retained_intron	chr7	74925042	74954642	AC211476.5	-	lncRNA	5934	opposite	4249_ID	chr7	74940473	74946406	5934	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
8371	ENST00000574081.6_6	ENST00000671211.1_1	chr17	5112214	5138155	SCIMP	-	protein_coding	chr17	5095336	5143404	AC087500.1	+	lncRNA	25941	opposite	12009_ID	chr17	5112215	5138155	25941	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
8378	ENST00000574307.2_3	ENST00000173229.7_2	chr17	9074384	9082435	AC005695.1	-	lncRNA	chr17	8924826	9147317	NTN1	+	protein_coding	8051	opposite	329_ID	chr17	9074385	9082435	8051	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
8413	ENST00000576215.1_3	ENST00000571457.1_3	chr17	78973308	78973930	AC127496.6	-	lncRNA	chr17	78968443	78983317	CHMP6	+	protein_coding	622	opposite	4038_ID	chr17	78973309	78973930	622	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
8426	ENST00000576615.1_3	ENST00000575310.1_1	chr17	7342477	7346646	AC113189.3	-	lncRNA	chr17	7323421	7347400	AC113189.2	+	lncRNA	4169	opposite	3842_ID	chr17	7342478	7346646	4169	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	4	6
8428	ENST00000576710.1_1	ENST00000283025.7_4	chr16	10785129	10786830	AC007595.1	+	lncRNA	chr16	10721357	10788787	TEKT5	-	protein_coding	1701	opposite	609_ID	chr16	10785130	10786830	1701	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
8452	ENST00000577281.2_1	ENST00000648631.1_3	chr17	70422079	70424993	AC007639.1	+	lncRNA	chr17	70286231	70588943	LINC00511	-	lncRNA	2914	opposite	622_ID	chr17	70422080	70424993	2914	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
8454	ENST00000577282.1	ENST00000534968.5_3	chr1	160515437	160515535	AL138930.2	-	miRNA	chr1	160510884	160549306	CD84	-	protein_coding	98	same	4987_ID	chr1	160515438	160515535	98	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	6
8534	ENST00000577683.1	ENST00000441887.5_1	chr17	18743930	18744231	RN7SL627P	+	misc_RNA	chr17	18743397	18785889	PRPSAP2	+	protein_coding	301	same	10318_ID	chr17	18743931	18744231	301	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
8558	ENST00000577788.1	ENST00000344641.8_2	chr9	125061388	125061642	RN7SL227P	-	misc_RNA	chr9	125027160	125093616	MRRF	+	protein_coding	254	opposite	10033_ID	chr9	125061389	125061642	254	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
8566	ENST00000577804.1	ENST00000219368.8_4	chr16	74781108	74781209	AC009132.1	+	miRNA	chr16	74746866	74808718	FA2H	-	protein_coding	101	opposite	896_ID	chr16	74781109	74781209	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
8574	ENST00000577850.1_3	ENST00000292114.8_2	chr17	26688622	26689881	AC002094.2	-	lncRNA	chr17	26684669	26690705	TMEM199	+	protein_coding	1259	opposite	37_ID	chr17	26688623	26689881	1259	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	6
8604	ENST00000578043.1	ENST00000246535.4_3	chr19	34912920	34913216	RN7SL154P	-	misc_RNA	chr19	34895303	34917073	PDCD2L	+	protein_coding	296	opposite	9981_ID	chr19	34912921	34913216	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
8621	ENST00000578164.1	ENST00000437723.1_1	chr15	65192179	65192438	RN7SL348P	-	misc_RNA	chr15	65134146	65223118	AC069368.1	+	protein_coding	259	opposite	10120_ID	chr15	65192180	65192438	259	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
8648	ENST00000578349.1_1	ENST00000646805.1_1	chr18	30161490	30162791	AC025887.1	+	lncRNA	chr18	30050250	30325530	AC025887.2	+	lncRNA	1301	same	2112_ID	chr18	30161491	30162791	1301	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
8673	ENST00000578504.1_3	ENST00000269216.10_4	chr18	19755425	19756623	AC091588.1	-	lncRNA	chr18	19749549	19782491	GATA6	+	protein_coding	1198	opposite	3007_ID	chr18	19755426	19756623	1198	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
8704	ENST00000578688.1	ENST00000669711.1_3	chr10	97824071	97824156	MIR3157	-	miRNA	chr10	97492732	97849996	ENTPD1-AS1	-	lncRNA	85	same	8279_ID	chr10	97824072	97824156	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
8705	ENST00000578704.1	ENST00000328879.9_4	chr22	20837511	20837603	AC007731.1	-	miRNA	chr22	20795805	20850082	KLHL22	-	protein_coding	92	same	642_ID	chr22	20837512	20837603	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
8732	ENST00000578838.1	ENST00000477014.1_1	chrX	102873432	102873502	AL049610.1	-	miRNA	chrX	102862898	102884618	TCEAL3	+	processed_transcript	70	opposite	4627_ID	chrX	102873433	102873502	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
8824	ENST00000579427.1	ENST00000675515.1_1	chr7	5567733	5567817	AC006483.1	-	miRNA	chr7	5566782	5603533	ACTB	-	protein_coding	84	same	469_ID	chr7	5567734	5567817	84	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	6
8854	ENST00000579556.1	ENST00000342412.10_1	chr20	61870130	61870194	MIR3196	+	miRNA	chr20	61867234	61871847	BIRC7	+	protein_coding	64	same	8306_ID	chr20	61870131	61870194	64	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
8856	ENST00000579574.1	ENST00000281471.11_4	chr12	31866683	31866782	AC023157.1	+	miRNA	chr12	31824075	31881955	AMN1	-	protein_coding	99	opposite	1936_ID	chr12	31866684	31866782	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
8859	ENST00000579580.1_1	ENST00000269209.7_5	chr18	29867399	29870303	AC015563.2	+	lncRNA	chr18	29843484	30050845	GAREM1	-	protein_coding	2904	opposite	1467_ID	chr18	29867400	29870303	2904	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
8917	ENST00000579909.1	ENST00000465139.6_5	chr15	69094188	69094264	MIR4312	-	miRNA	chr15	69070873	69113234	ANP32A	-	protein_coding	76	same	8508_ID	chr15	69094189	69094264	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
8920	ENST00000579923.1_3	ENST00000584775.5_1	chr18	66420415	66421820	AC022035.1	-	lncRNA	chr18	66382511	66541946	CCDC102B	+	protein_coding	1405	opposite	1817_ID	chr18	66420416	66421820	1405	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
8959	ENST00000580178.1	ENST00000568007.5_3	chr16	48448688	48448970	RN7SL54P	+	misc_RNA	chr16	48390274	48482313	SIAH1	-	nonsense_mediated_decay	282	opposite	10264_ID	chr16	48448689	48448970	282	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
8973	ENST00000580267.1_3	ENST00000649141.1_1	chr18	8635176	8636345	AP001793.1	-	lncRNA	chr18	8609434	8639379	RAB12	+	protein_coding	1169	opposite	6162_ID	chr18	8635177	8636345	1169	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
8977	ENST00000580312.1	ENST00000339082.7_3	chr19	44167327	44167426	AC006953.1	-	miRNA	chr19	44150246	44174318	PLAUR	-	protein_coding	99	same	490_ID	chr19	44167328	44167426	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
8984	ENST00000580337.1	ENST00000398250.6_4	chr10	122223345	122223443	AC073587.1	-	miRNA	chr10	122216738	122351577	PLPP4	+	protein_coding	98	opposite	2536_ID	chr10	122223346	122223443	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
9043	ENST00000580609.1	ENST00000393004.6_3	chr6	76138122	76138189	MIR4463	+	miRNA	chr6	76001574	76203345	FILIP1	-	protein_coding	67	opposite	8555_ID	chr6	76138123	76138189	67	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
9046	ENST00000580629.1	ENST00000629817.2_5	chr2	166005704	166005983	RN7SL455P	-	misc_RNA	chr2	165848666	166064771	AC019197.1	+	lncRNA	279	opposite	10196_ID	chr2	166005705	166005983	279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
9048	ENST00000580634.1	ENST00000395514.5_3	chr14	55344830	55344911	MIR4308	-	miRNA	chr14	55308725	55369542	GCH1	-	protein_coding	81	same	8503_ID	chr14	55344831	55344911	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
9066	ENST00000580727.1	ENST00000427025.6_6	chr6	138756349	138756431	MIR3145	-	miRNA	chr6	138743179	138893677	NHSL1	-	protein_coding	82	same	8268_ID	chr6	138756350	138756431	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
9071	ENST00000580764.1	ENST00000512784.6_4	chr14	76821071	76821352	RN7SL747P	-	misc_RNA	chr14	76777054	76964818	ESRRB	+	protein_coding	281	opposite	10402_ID	chr14	76821072	76821352	281	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
9085	ENST00000580821.1	ENST00000296214.10_3	chr1	37966535	37966595	MIR5581	-	miRNA	chr1	37955593	37980367	MEAF6	-	protein_coding	60	same	8934_ID	chr1	37966536	37966595	60	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
9124	ENST00000581001.1	ENST00000536178.3_1	chr7	101936368	101936453	MIR4285	+	miRNA	chr7	101928445	101962178	SH2B2	+	protein_coding	85	same	8480_ID	chr7	101936369	101936453	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
9150	ENST00000581158.1	ENST00000515499.5_1	chr5	180649565	180649633	MIR4638	-	miRNA	chr5	180649498	180661326	TRIM41	+	protein_coding	68	opposite	8624_ID	chr5	180649566	180649633	68	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	6
9199	ENST00000581512.1	ENST00000378251.3_4	chr1	3699378	3699673	RN7SL574P	+	misc_RNA	chr1	3695122	3713062	LRRC47	-	protein_coding	295	opposite	10279_ID	chr1	3699379	3699673	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
9241	ENST00000581789.1	ENST00000482677.5_1	chr3	67878595	67878697	AC113171.1	+	miRNA	chr3	67705181	67998137	SUCLG2-AS1	+	lncRNA	102	same	3838_ID	chr3	67878596	67878697	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
9265	ENST00000581881.1	ENST00000295971.12_6	chr4	40504056	40504136	MIR4802	-	miRNA	chr4	40425296	40631881	RBM47	-	protein_coding	80	same	8785_ID	chr4	40504057	40504136	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
9266	ENST00000581890.1	ENST00000231887.8_4	chr3	184970997	184971060	hsa-mir-5588	-	miRNA	chr3	184908411	184971837	EHHADH	-	protein_coding	63	same	7303_ID	chr3	184970998	184971060	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
9275	ENST00000581926.1	ENST00000359227.8_4	chr19	11578090	11578412	RN7SL669P	+	misc_RNA	chr19	11562140	11591861	ELAVL3	-	protein_coding	322	opposite	10353_ID	chr19	11578091	11578412	322	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
9281	ENST00000581946.1_3	ENST00000540900.7_1	chr17	28449446	28453136	AC104984.3	-	lncRNA	chr17	28442538	28512865	NSRP1	+	processed_transcript	3690	opposite	3579_ID	chr17	28449447	28453136	3690	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
9302	ENST00000582080.1_1	ENST00000308249.4_2	chr17	57043312	57044088	AC100832.2	+	lncRNA	chr17	56833214	57062540	PPM1E	+	protein_coding	776	same	3432_ID	chr17	57043313	57044088	776	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
9322	ENST00000582190.1	ENST00000571058.5_2	chr17	1733134	1733217	AC130689.1	-	miRNA	chr17	1732995	1775777	RPA1	+	protein_coding	83	opposite	4076_ID	chr17	1733135	1733217	83	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
9381	ENST00000582477.1	ENST00000601521.5_3	chr19	58898136	58898225	MIR4754	-	miRNA	chr19	58897766	58906173	RPS5	+	protein_coding	89	opposite	8742_ID	chr19	58898137	58898225	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
9392	ENST00000582598.1	ENST00000537916.2_1	chr8	28362632	28362699	MIR4288	-	miRNA	chr8	28351721	28431784	FZD3	+	protein_coding	67	opposite	8483_ID	chr8	28362633	28362699	67	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
9479	ENST00000583015.1	ENST00000296755.12_2	chr5	71465293	71465367	MIR4803	+	miRNA	chr5	71403301	71505392	MAP1B	+	protein_coding	74	same	8786_ID	chr5	71465294	71465367	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
9481	ENST00000583027.1	ENST00000674416.1_1	chr13	42142421	42142531	MIR5006	-	miRNA	chr13	42122083	42164598	AL354833.1	+	lncRNA	110	opposite	8810_ID	chr13	42142422	42142531	110	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
9495	ENST00000583126.1	ENST00000644144.2_4	chr9	130631693	130631774	MIR4672	-	miRNA	chr9	130628764	130639954	AK1	-	protein_coding	81	same	8662_ID	chr9	130631694	130631774	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
9538	ENST00000583349.1_3	ENST00000362042.8_4	chr17	46137744	46138031	AC004477.1	-	lncRNA	chr17	46125720	46138907	NFE2L1	+	protein_coding	287	opposite	133_ID	chr17	46137745	46138031	287	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
9613	ENST00000583764.1	ENST00000313468.10_2	chr11	67801363	67801448	MIR4691	+	miRNA	chr11	67798147	67804111	NDUFS8	+	protein_coding	85	same	8676_ID	chr11	67801364	67801448	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
9634	ENST00000583925.1	ENST00000377075.3_2	chr2	97464014	97464090	MIR3127	+	miRNA	chr2	97426638	97477611	CNNM4	+	protein_coding	76	same	8250_ID	chr2	97464015	97464090	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
9642	ENST00000583956.1	ENST00000612814.5_5	chr17	26729127	26731067	CTD-2350C19.1	+	antisense	chr17	26721660	26733230	SLC46A1	-	protein_coding	1940	opposite	6736_ID	chr17	26729128	26731067	1940	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
9677	ENST00000584133.1	ENST00000457478.1_3	chr2	3020990	3021102	AC074264.1	-	miRNA	chr2	2898819	3129798	LINC01250	-	lncRNA	112	same	2576_ID	chr2	3020991	3021102	112	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
9678	ENST00000584139.1_1	ENST00000255390.10_4	chr17	10584050	10587305	AC002347.2	+	lncRNA	chr17	10575790	10600850	SCO1	-	protein_coding	3255	opposite	44_ID	chr17	10584051	10587305	3255	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	6
9742	ENST00000584487.1	ENST00000548458.6_1	chr12	105721683	105721770	AC011313.1	-	miRNA	chr12	105629067	105764958	C12orf75	+	processed_transcript	87	opposite	1188_ID	chr12	105721684	105721770	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
9766	ENST00000584638.1	ENST00000654635.1_3	chr3	8048163	8048248	AC069276.1	-	miRNA	chr3	7992949	8543358	LMCD1-AS1	-	lncRNA	85	same	2480_ID	chr3	8048164	8048248	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
9768	ENST00000584643.1_1	ENST00000522212.6_5	chr17	15434086	15434403	AC005838.2	-	lncRNA	chr17	15339337	15466875	TVP23C-CDRT4	-	protein_coding	317	same	369_ID	chr17	15434087	15434403	317	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
9775	ENST00000584704.1	ENST00000544408.5_3	chr22	41209886	41209962	MIR4766	-	miRNA	chr22	41165633	41215403	SLC25A17	-	protein_coding	76	same	8753_ID	chr22	41209887	41209962	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
9813	ENST00000584907.1	ENST00000299432.7_5	chr10	75188424	75188494	AL353731.1	+	miRNA	chr10	75183336	75193319	MSS51	-	protein_coding	70	opposite	5258_ID	chr10	75188425	75188494	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
9817	ENST00000584938.1	ENST00000356840.8_2	chr6	16141786	16141855	MIR4639	+	miRNA	chr6	16129316	16148479	MYLIP	+	protein_coding	69	same	8625_ID	chr6	16141787	16141855	69	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
9838	ENST00000585065.1_3	ENST00000578794.2_6	chr17	56066404	56072211	AC015813.1	-	lncRNA	chr17	56066398	56084607	AC015813.2	-	nonsense_mediated_decay	5812	same	1482_ID	chr17	56066405	56072211	5807	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	6
9839	ENST00000585066.1	ENST00000361682.11_3	chr22	19951275	19951357	MIR4761	+	miRNA	chr22	19929294	19957498	COMT	+	protein_coding	82	same	8748_ID	chr22	19951276	19951357	82	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
9913	ENST00000585832.3_4	ENST00000588030.5_1	chr19	1267469	1270259	CIRBP-AS1	-	lncRNA	chr19	1259382	1273171	CIRBP	+	protein_coding	2790	opposite	6654_ID	chr19	1267470	1270259	2790	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
9914	ENST00000585877.1_1	ENST00000585331.6_1	chr18	12670424	12671144	AP005482.2	-	lncRNA	chr18	12658736	12725739	PSMG2	+	protein_coding	720	opposite	6302_ID	chr18	12670425	12671144	720	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
9916	ENST00000585888.1_3	ENST00000370550.10_2	chr1	87397881	87400574	AL121989.1	-	lncRNA	chr1	87380317	87575665	HS2ST1	+	protein_coding	2693	opposite	4791_ID	chr1	87397882	87400574	2693	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
9951	ENST00000586878.1_1	ENST00000540900.7_1	chr17	28444096	28444190	hsa-mir-423	-	lncRNA	chr17	28442538	28512865	NSRP1	+	processed_transcript	94	opposite	7298_ID	chr17	28444097	28444190	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
9999	ENST00000588304.5_2	ENST00000592883.5_4	chr19	6135645	6193105	ACSBG2	+	protein_coding	chr19	6040084	6199540	RFX2	-	protein_coding	57848	opposite	4334_ID	chr19	6135646	6193105	57460	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
10002	ENST00000588445.1_1	ENST00000674182.1_3	chr17	33880223	33881786	AC015911.6	+	lncRNA	chr17	33871003	33887838	SLFN14	-	protein_coding	1563	opposite	1504_ID	chr17	33880224	33881786	1563	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
10044	ENST00000590143.5_3	ENST00000585331.6_1	chr18	12661831	12702638	CEP76	-	nonsense_mediated_decay	chr18	12658736	12725739	PSMG2	+	protein_coding	40945	opposite	6624_ID	chr18	12661832	12702638	40807	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
10050	ENST00000590241.1_1	ENST00000592432.5_1	chr17	74546032	74546908	AC015802.3	+	lncRNA	chr17	74523667	74549660	PRCD	+	processed_transcript	876	same	1477_ID	chr17	74546033	74546908	876	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
10052	ENST00000590309.1_1	ENST00000315249.11_3	chr17	33400849	33401393	AC004223.2	-	lncRNA	chr17	33333008	33416338	RFFL	-	protein_coding	544	same	111_ID	chr17	33400850	33401393	544	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
10083	ENST00000591336.1_1	ENST00000591998.6_4	chr19	9402190	9405158	AC011451.1	+	lncRNA	chr19	9401815	9420514	ZNF699	-	protein_coding	2968	opposite	1216_ID	chr19	9402191	9405158	2968	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
10089	ENST00000591432.1_3	ENST00000587566.5_4	chr19	45639250	45640235	AC005757.1	-	lncRNA	chr19	45582545	45769504	MARK4	+	protein_coding	985	opposite	353_ID	chr19	45639251	45640235	985	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
10091	ENST00000591540.1_3	ENST00000449302.8_2	chr17	41860171	41862050	AC003098.1	-	lncRNA	chr17	41857802	41864988	CFAP97D1	+	protein_coding	1879	opposite	82_ID	chr17	41860172	41862050	1879	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	6
10092	ENST00000591569.1_2	ENST00000587566.5_4	chr19	45690645	45720191	BLOC1S3	+	processed_transcript	chr19	45582545	45769504	MARK4	+	protein_coding	38150	same	6422_ID	chr19	45690646	45720191	29546	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
10099	ENST00000591826.1_3	ENST00000040663.8_2	chr19	13883286	13884932	AC008686.1	-	lncRNA	chr19	13875335	13885096	MRI1	+	protein_coding	2001	opposite	774_ID	chr19	13883287	13884932	1646	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
10101	ENST00000591928.1_3	ENST00000540900.7_1	chr17	28471079	28471808	AC104984.5	-	lncRNA	chr17	28442538	28512865	NSRP1	+	processed_transcript	729	opposite	3580_ID	chr17	28471080	28471808	729	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
10102	ENST00000591936.1_1	ENST00000587340.5_5	chr19	56823296	56823855	AC006116.5	-	lncRNA	chr19	56732680	56879752	ZSCAN5A	-	protein_coding	559	same	422_ID	chr19	56823297	56823855	559	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
10143	ENST00000593258.1_1	ENST00000587340.5_5	chr19	56858449	56859552	AC006116.6	-	lncRNA	chr19	56732680	56879752	ZSCAN5A	-	protein_coding	1103	same	424_ID	chr19	56858450	56859552	1103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
10158	ENST00000593957.1_3	ENST00000528604.5_1	chr19	17525065	17533133	AC010319.4	-	lncRNA	chr19	17516549	17535798	MVB12A	+	protein_coding	8068	opposite	1059_ID	chr19	17525066	17533133	8068	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
10165	ENST00000594215.2_1	ENST00000642083.1_1	chr8	8046056	8046717	AC068020.1	-	lncRNA	chr8	7917117	8057495	AC105233.4	+	lncRNA	50368	opposite	2387_ID	chr8	8046057	8046717	661	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
10186	ENST00000594910.1_1	ENST00000526824.5_3	chr19	51533331	51537591	AC011473.3	+	lncRNA	chr19	51532349	51538486	KLK12	-	nonsense_mediated_decay	4260	opposite	1241_ID	chr19	51533332	51537591	4260	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	6
10188	ENST00000595053.2_1	ENST00000531673.5_1	chr11	112130987	112132119	AP002884.3	+	lncRNA	chr11	112097110	112140678	PTS	+	nonsense_mediated_decay	1132	same	6215_ID	chr11	112130988	112132119	1132	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
10190	ENST00000595107.1_1	ENST00000407627.7_4	chr19	8024006	8024896	AC010336.6	+	lncRNA	chr19	8023456	8070525	ELAVL1	-	protein_coding	890	opposite	1069_ID	chr19	8024007	8024896	890	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
10196	ENST00000595383.2_1	ENST00000611255.5_5	chr10	77402233	77402864	AL589863.1	+	lncRNA	chr10	77191381	78319926	LRMDA	+	protein_coding	631	same	5742_ID	chr10	77402234	77402864	631	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
10226	ENST00000596286.1_1	ENST00000391805.5_3	chr19	51517629	51517990	AC011473.2	+	lncRNA	chr19	51516000	51523431	KLK10	-	protein_coding	361	opposite	1240_ID	chr19	51517630	51517990	361	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
10228	ENST00000596382.1_1	ENST00000421239.7_3	chr19	52956834	52962089	AC010332.3	+	retained_intron	chr19	52956805	53020135	ZNF578	+	protein_coding	5257	same	1065_ID	chr19	52956835	52962089	5255	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
10232	ENST00000596451.1_3	ENST00000601257.5_3	chr19	53100951	53102140	AC022150.2	-	lncRNA	chr19	53097403	53193749	ZNF83	-	protein_coding	1189	same	1831_ID	chr19	53100952	53102140	1189	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
10252	ENST00000596829.1_1	ENST00000344458.6_1	chr2	220411932	220412380	AC009955.3	-	lncRNA	chr2	220408384	220415301	TMEM198	+	protein_coding	448	opposite	1010_ID	chr2	220411933	220412380	448	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
10259	ENST00000597028.1_1	ENST00000528604.5_1	chr19	17530113	17530583	AC010319.3	-	lncRNA	chr19	17516549	17535798	MVB12A	+	protein_coding	470	opposite	1057_ID	chr19	17530114	17530583	470	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
10272	ENST00000597303.1_1	ENST00000292853.9_5	chr19	39521075	39521963	AC010605.1	+	lncRNA	chr19	39514660	39523189	FBXO27	-	protein_coding	888	opposite	1111_ID	chr19	39521076	39521963	888	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
10275	ENST00000597357.1_1	ENST00000595753.6_4	chr19	16662583	16663139	AC008764.3	+	lncRNA	chr19	16660647	16683226	SLC35E1	-	protein_coding	556	opposite	807_ID	chr19	16662584	16663139	556	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	6
10281	ENST00000597609.1_3	ENST00000291295.14_3	chr19	47112533	47114036	AC093503.1	-	lncRNA	chr19	47104586	47114039	CALM3	+	protein_coding	1503	opposite	3210_ID	chr19	47112534	47114036	1503	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
10290	ENST00000597865.1_1	ENST00000599795.5_4	chr19	49563869	49564389	AC008687.2	+	lncRNA	chr19	49559049	49568333	AC008687.8	-	nonsense_mediated_decay	520	opposite	775_ID	chr19	49563870	49564389	520	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
10306	ENST00000598322.1_1	ENST00000601257.5_3	chr19	53153689	53156537	AC022150.4	-	lncRNA	chr19	53097403	53193749	ZNF83	-	protein_coding	2848	same	1833_ID	chr19	53153690	53156537	2848	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
10333	ENST00000599143.1_3	ENST00000421239.7_3	chr19	53014534	53015595	AC022150.3	-	lncRNA	chr19	52956805	53020135	ZNF578	+	protein_coding	1061	opposite	1832_ID	chr19	53014535	53015595	1061	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
10336	ENST00000599209.1_1	ENST00000599795.5_4	chr19	49567515	49568113	AC008687.3	+	lncRNA	chr19	49559049	49568333	AC008687.8	-	nonsense_mediated_decay	598	opposite	777_ID	chr19	49567516	49568113	598	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
10338	ENST00000599274.1_1	ENST00000600322.5_3	chr19	39832412	39832585	AC011445.1	-	lncRNA	chr19	39819001	39833012	GMFG	-	protein_coding	173	same	1213_ID	chr19	39832413	39832585	173	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
10341	ENST00000599369.5_3	ENST00000600534.1_1	chr19	59073299	59084942	MZF1	-	protein_coding	chr19	59070591	59086164	MZF1-AS1	+	lncRNA	11645	opposite	9216_ID	chr19	59073300	59084942	11643	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
10355	ENST00000599823.1	ENST00000231198.12_2	chr5	157160002	157161727	AC026407.1	-	protein_coding	chr5	157158427	157168457	THG1L	+	protein_coding	1725	opposite	2147_ID	chr5	157160003	157161727	1725	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
10388	ENST00000600965.1_1	ENST00000674559.1_1	chr9	131932712	131933219	AL158151.4	+	lncRNA	chr9	131902286	132022854	AL158151.3	+	nonsense_mediated_decay	507	same	5101_ID	chr9	131932713	131933219	507	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
10419	ENST00000601797.1_3	ENST00000598664.5_2	chr19	7698651	7701876	AC008763.1	-	lncRNA	chr19	7694681	7707934	AC008763.2	+	nonsense_mediated_decay	3225	opposite	805_ID	chr19	7698652	7701876	3225	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
10444	ENST00000602352.1_1	ENST00000652466.1_3	chr12	123746606	123746949	AC068768.1	+	lncRNA	chr12	123734658	123752864	CDK2AP1	-	nonsense_mediated_decay	343	opposite	2441_ID	chr12	123746607	123746949	343	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
10453	ENST00000602426.1_1	ENST00000652320.1_1	chr6	106548014	106548468	AL022067.1	+	lncRNA	chr6	106441337	106557814	PRDM1	+	protein_coding	454	same	4468_ID	chr6	106548015	106548468	454	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
10460	ENST00000602456.1_1	ENST00000382771.9_2	chr18	61152833	61153251	AC036176.3	+	lncRNA	chr18	61144190	61172318	SERPINB5	+	protein_coding	418	same	2271_ID	chr18	61152834	61153251	418	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
10533	ENST00000602963.1_1	ENST00000284551.11_4	chr1	228581990	228584668	AL670729.1	+	lncRNA	chr1	228581376	228594536	TRIM11	-	protein_coding	2678	opposite	5879_ID	chr1	228581991	228584668	2678	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	6
10560	ENST00000603533.1_1	ENST00000636777.1_3	chr9	98169271	98169944	AL161729.3	-	lncRNA	chr9	97912296	98189024	FANCC	-	processed_transcript	673	same	5167_ID	chr9	98169272	98169944	673	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
10612	ENST00000604955.1_1	ENST00000659668.1_1	chr8	89820546	89821137	AC090578.2	-	lncRNA	chr8	89554941	89899802	AC090578.1	+	lncRNA	591	opposite	2911_ID	chr8	89820547	89821137	591	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
10624	ENST00000605249.1_1	ENST00000642963.1_2	chr7	130614967	130616965	AC016831.4	-	lncRNA	chr7	130476022	130792687	AC016831.6	-	lncRNA	1998	same	1566_ID	chr7	130614968	130616965	1998	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
10656	ENST00000605962.2_3	ENST00000650021.1_1	chr2	34925425	34928673	AC073218.1	-	lncRNA	chr2	34414879	34947900	LINC01320	+	lncRNA	11317	opposite	2513_ID	chr2	34925426	34928673	3248	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
10704	ENST00000606436.1_1	ENST00000607452.6_3	chr2	54309690	54312203	AC008280.2	+	lncRNA	chr2	54198249	54532437	ACYP2	+	protein_coding	2513	same	720_ID	chr2	54309691	54312203	2513	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
10720	ENST00000606566.1_1	ENST00000648399.1_1	chr5	6779570	6780111	AC122710.2	+	lncRNA	chr5	6775930	6833233	LINC02236	+	lncRNA	541	same	3985_ID	chr5	6779571	6780111	541	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
10738	ENST00000606756.1_1	ENST00000392491.2	chr6	122964532	122965916	AL512283.1	+	lncRNA	chr6	122793075	123047035	PKIB	+	protein_coding	1384	same	5676_ID	chr6	122964533	122965916	1384	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
10741	ENST00000606796.1_1	ENST00000576263.5_1	chr6	45388815	45389742	AL096865.1	-	lncRNA	chr6	45296463	45632086	RUNX2	+	protein_coding	927	opposite	4690_ID	chr6	45388816	45389742	927	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
10758	ENST00000606910.5_2	ENST00000607062.5_3	chr2	190526244	190532607	AC012488.2	+	protein_coding	chr2	190526110	190535483	ASNSD1	+	protein_coding	6363	same	1393_ID	chr2	190526245	190532607	6363	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
10796	ENST00000607313.1	ENST00000332968.11_5	chr18	47018033	47018099	SNORD58B	-	snoRNA	chr18	47008521	47018849	RPL17-C18orf32	-	protein_coding	66	same	12430_ID	chr18	47018034	47018099	66	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
10821	ENST00000607478.1_1	ENST00000592432.5_1	chr17	74547433	74547832	AC015802.5	+	lncRNA	chr17	74523667	74549660	PRCD	+	processed_transcript	399	same	1481_ID	chr17	74547434	74547832	399	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
10827	ENST00000607535.5_2	ENST00000607062.5_3	chr2	190526184	190531163	ASDURF	+	protein_coding	chr2	190526110	190535483	ASNSD1	+	protein_coding	4986	same	6354_ID	chr2	190526185	190531163	4979	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
10872	ENST00000607963.1_1	ENST00000304760.3_4	chr1	154452487	154453977	AL162591.2	+	lncRNA	chr1	154451956	154474888	SHE	-	protein_coding	1490	opposite	5212_ID	chr1	154452488	154453977	1490	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	6	6
10906	ENST00000608273.1_1	ENST00000380127.5_6	chr10	5855947	5856404	AL596094.1	+	lncRNA	chr10	5827968	5884095	GDI2	-	protein_coding	457	opposite	5822_ID	chr10	5855948	5856404	457	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
10914	ENST00000608367.1_2	ENST00000443891.5_1	chr2	219263465	219263942	AC021016.2	-	lncRNA	chr2	219263060	219269399	CTDSP1	+	protein_coding	477	opposite	1774_ID	chr2	219263466	219263942	477	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
10941	ENST00000608733.1_1	ENST00000265164.7_4	chr4	110613159	110613859	AC004067.1	+	lncRNA	chr4	110609783	110624601	CASP6	-	protein_coding	700	opposite	96_ID	chr4	110613160	110613859	700	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
10964	ENST00000609017.1_1	ENST00000432777.5_1	chr22	31478141	31479551	AC005005.3	-	lncRNA	chr22	31460090	31484011	SMTN	+	protein_coding	1410	opposite	210_ID	chr22	31478142	31479551	1410	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
10966	ENST00000609067.1_1	ENST00000541657.5_5	chr12	122235416	122239878	AC084018.1	+	lncRNA	chr12	122218857	122240834	RHOF	-	protein_coding	4462	opposite	2730_ID	chr12	122235417	122239878	4462	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
10994	ENST00000609375.1_5	ENST00000347364.7_3	chr20	10394167	10412570	AL034430.1	-	protein_coding	chr20	10381656	10414870	MKKS	-	protein_coding	18403	same	4587_ID	chr20	10394168	10412570	18403	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	6
11008	ENST00000609480.4_4	ENST00000679229.1_1	chr7	128506383	128512101	ATP6V1FNB	+	protein_coding	chr7	128502095	128521032	KCP	-	retained_intron	5718	opposite	6383_ID	chr7	128506384	128512101	5718	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
11032	ENST00000609758.1_1	ENST00000463053.1_3	chr22	51035580	51036028	U62317.2	+	lncRNA	chr22	51018785	51039884	CHKB	-	processed_transcript	448	opposite	12831_ID	chr22	51035581	51036028	448	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
11052	ENST00000609955.1_1	ENST00000234310.8_4	chr2	68406964	68407664	AC017083.2	+	lncRNA	chr2	68405988	68479664	PPP3R1	-	protein_coding	700	opposite	1609_ID	chr2	68406965	68407664	700	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	6
11063	ENST00000610042.1_1	ENST00000318037.3_4	chr3	196201671	196202265	AC117490.2	+	lncRNA	chr3	196195653	196230639	RNF168	-	protein_coding	594	opposite	3934_ID	chr3	196201672	196202265	594	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	6
11068	ENST00000610057.1_1	ENST00000616577.4_3	chr13	45914173	45915318	AL138963.3	+	lncRNA	chr13	45907605	45915419	TPT1	-	protein_coding	1145	opposite	4991_ID	chr13	45914174	45915318	1145	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
11077	ENST00000610143.1_1	ENST00000498589.1_3	chr22	22016222	22016652	AP000553.2	+	lncRNA	chr22	22006558	22024526	AP000553.1	+	lncRNA	430	same	6000_ID	chr22	22016223	22016652	430	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
11084	ENST00000610230.1_1	ENST00000426972.8_3	chr1	85932977	85933343	AL360219.1	+	lncRNA	chr1	85784163	86044046	DDAH1	-	protein_coding	366	opposite	5528_ID	chr1	85932978	85933343	366	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
11101	ENST00000610430.1_1	ENST00000372121.5_4	chr20	45310314	45311014	AL133520.1	-	lncRNA	chr20	45216781	45313106	SLC13A3	-	protein_coding	700	same	4868_ID	chr20	45310315	45311014	700	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
11106	ENST00000610572.1_1	ENST00000673902.1_2	chr4	90664942	90665456	AC097478.1	+	lncRNA	chr4	90621495	90758461	SNCA	-	protein_coding	514	opposite	3316_ID	chr4	90664943	90665456	514	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
11109	ENST00000610631.1_1	ENST00000376874.9_5	chr12	123999821	124000060	AC145423.1	-	lncRNA	chr12	123954600	124018266	RILPL1	-	protein_coding	239	same	4239_ID	chr12	123999822	124000060	239	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
11116	ENST00000610812.1_1	ENST00000473415.1_3	chr20	17546145	17546496	AL132765.2	-	lncRNA	chr20	17492636	17549865	BFSP1	-	processed_transcript	351	same	4814_ID	chr20	17546146	17546496	351	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
11148	ENST00000611627.1_1	ENST00000454799.6_1	chr12	8358579	8359993	AC092111.2	+	lncRNA	chr12	8332804	8368747	FAM66C	+	lncRNA	1414	same	3048_ID	chr12	8358580	8359993	1414	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
11172	ENST00000612426.1_1	ENST00000315249.11_3	chr17	33345678	33346010	AC004223.4	+	lncRNA	chr17	33333008	33416338	RFFL	-	protein_coding	332	opposite	114_ID	chr17	33345679	33346010	332	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
11182	ENST00000612722.1_1	ENST00000370307.6_4	chr20	61885329	61892967	FLJ16779	+	lncRNA	chr20	61872741	61904046	NKAIN4	-	protein_coding	7638	opposite	7040_ID	chr20	61885330	61892967	7638	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
11216	ENST00000613401.1_1	ENST00000448100.6_3	chr20	62361423	62361729	AL121845.4	-	lncRNA	chr20	62338816	62367493	ZGPAT	+	protein_coding	306	opposite	4763_ID	chr20	62361424	62361729	306	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
11228	ENST00000613598.1_1	ENST00000591482.1_1	chr17	26700274	26700581	AC002094.4	+	lncRNA	chr17	26684669	26708716	AC002094.1	+	lncRNA	307	same	39_ID	chr17	26700275	26700581	307	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
11234	ENST00000613819.1_1	ENST00000584775.5_1	chr18	66388318	66388797	AC040896.1	+	lncRNA	chr18	66382511	66541946	CCDC102B	+	protein_coding	479	same	2292_ID	chr18	66388319	66388797	479	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
11242	ENST00000613918.1_1	ENST00000444614.8_4	chr13	44451850	44452299	AL512506.1	-	lncRNA	chr13	44410487	44453876	CCDC122	-	protein_coding	449	same	5686_ID	chr13	44451851	44452299	449	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
11276	ENST00000614759.1_3	ENST00000614239.1_3	chr17	35297345	35300755	AC243773.1	-	lncRNA	chr17	35294771	35301912	LHX1	+	protein_coding	3410	opposite	4283_ID	chr17	35297346	35300755	3410	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	6
11283	ENST00000614876.1_1	ENST00000228567.7_4	chr12	33585245	33585788	AC023158.2	-	lncRNA	chr12	33527172	33592754	SYT10	-	protein_coding	543	same	1938_ID	chr12	33585246	33585788	543	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
11308	ENST00000615612.2_2	ENST00000216036.9_4	chr22	23412704	23467219	GNAZ	+	protein_coding	chr22	23401592	23484177	RSPH14	-	protein_coding	54515	opposite	7138_ID	chr22	23412705	23467219	54515	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
11326	ENST00000615968.1_2	ENST00000673902.1_2	chr4	90668952	90677004	AC097478.3	+	lncRNA	chr4	90621495	90758461	SNCA	-	protein_coding	8052	opposite	3319_ID	chr4	90668953	90677004	8052	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
11328	ENST00000615987.1_1	ENST00000376874.9_5	chr12	124003936	124004403	AC145423.2	-	lncRNA	chr12	123954600	124018266	RILPL1	-	protein_coding	467	same	4240_ID	chr12	124003937	124004403	467	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
11350	ENST00000616553.1_1	ENST00000219204.8_2	chr16	57279743	57280308	AC009090.3	-	lncRNA	chr16	57279170	57287547	ARL2BP	+	protein_coding	565	opposite	861_ID	chr16	57279744	57280308	565	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
11387	ENST00000617427.1_1	ENST00000615133.2_4	chr17	35743820	35744861	AC243654.3	+	lncRNA	chr17	35732926	35749662	C17orf78	+	protein_coding	1041	same	4281_ID	chr17	35743821	35744861	1041	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
11402	ENST00000617850.1_1	ENST00000564353.5_1	chr15	74891259	74891738	AC100835.2	-	lncRNA	chr15	74890840	74901068	CLK3	+	processed_transcript	479	opposite	3435_ID	chr15	74891260	74891738	479	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	6
11414	ENST00000618101.4_2	ENST00000655615.1_3	chr9	102584136	102629173	NR4A3	+	protein_coding	chr9	102159305	102668887	STX17-AS1	-	lncRNA	45037	opposite	9301_ID	chr9	102584137	102629173	45037	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
11419	ENST00000618336.4_3	ENST00000648852.1_2	chr9	117655622	117692875	TNFSF8	-	protein_coding	chr9	117613247	117883309	DELEC1	+	lncRNA	37253	opposite	12753_ID	chr9	117655623	117692875	37253	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
11510	ENST00000620306.1_1	ENST00000537256.5_1	chr16	87717550	87718083	AC010536.3	-	lncRNA	chr16	87635440	87731533	JPH3	+	processed_transcript	533	opposite	1100_ID	chr16	87717551	87718083	533	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
11515	ENST00000620420.1_1	ENST00000673902.1_2	chr4	90669433	90670305	AC097478.2	+	lncRNA	chr4	90621495	90758461	SNCA	-	protein_coding	872	opposite	3318_ID	chr4	90669434	90670305	872	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
11523	ENST00000620522.2_3	ENST00000592005.5_1	chr18	44548657	44549423	ELOA3C	-	protein_coding	chr18	44497454	44624853	KATNAL2	+	protein_coding	766	opposite	6900_ID	chr18	44548658	44549423	766	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
11537	ENST00000620933.1_1	ENST00000256078.10_6	chr12	25378036	25378599	AC092794.2	+	lncRNA	chr12	25358179	25403863	KRAS	-	protein_coding	563	opposite	3148_ID	chr12	25378037	25378599	563	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
11585	ENST00000621854.1_1	ENST00000544233.5_3	chr12	118475673	118475886	AC131159.1	+	lncRNA	chr12	118470498	118499016	WSB2	-	protein_coding	213	opposite	4083_ID	chr12	118475674	118475886	213	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
11673	ENST00000624054.1_1	ENST00000492572.5_1	chrX	153625218	153627157	AC245140.2	-	lncRNA	chrX	153618314	153629238	RPL10	+	retained_intron	1939	opposite	4307_ID	chrX	153625219	153627157	1939	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
11691	ENST00000624419.2_2	ENST00000579793.6_2	chr1	145209152	145282078	NOTCH2NLR	+	protein_coding	chr1	145209118	145291654	NOTCH2NLA	+	protein_coding	72926	same	9282_ID	chr1	145209153	145282078	72926	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
11727	ENST00000625150.1_1	ENST00000377669.6_3	chr13	74418819	74419267	AL159972.1	-	lncRNA	chr13	74260225	74569186	KLF12	-	protein_coding	448	same	5124_ID	chr13	74418820	74419267	448	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
11746	ENST00000626781.2_4	ENST00000545446.5_1	chr19	1385471	1389664	AC005329.3	-	lncRNA	chr19	1383873	1395583	NDUFS7	+	retained_intron	4193	opposite	277_ID	chr19	1385472	1389664	4193	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
11750	ENST00000627044.1_1	ENST00000648514.1_3	chr13	80585211	80602418	LINC01080	+	lncRNA	chr13	80515665	80648775	AL158064.1	-	lncRNA	17207	opposite	7600_ID	chr13	80585212	80602418	17207	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
11769	ENST00000628989.1_3	ENST00000650342.1_1	chr10	6816268	6821142	LINC00706	-	lncRNA	chr10	6724474	6865751	AL158210.1	+	lncRNA	4874	opposite	7574_ID	chr10	6816269	6821142	4874	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
11842	ENST00000635449.1_1	ENST00000645463.1_1	chr8	128092118	128104845	PRNCR1	+	lncRNA	chr8	127570137	128305107	PCAT1	+	lncRNA	12727	same	9645_ID	chr8	128092119	128104845	12727	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
11845	ENST00000635518.1_1	ENST00000635645.1_1	chrX	123380098	123470690	TEX13D	+	processed_transcript	chrX	123361717	123507047	SH2D1A	+	processed_transcript	90615	same	12656_ID	chrX	123380099	123470690	90592	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
11854	ENST00000636043.1_3	ENST00000634371.1_3	chr6	30902299	30921998	MUCL3	+	protein_coding	chr6	30899138	30923413	SFTA2	-	protein_coding	19699	opposite	9188_ID	chr6	30902300	30921998	19699	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
11872	ENST00000636941.1_4	ENST00000444908.7_2	chr7	143336322	143344739	TCAF2C	-	protein_coding	chr7	143318044	143422175	TCAF2	+	protein_coding	8417	opposite	12640_ID	chr7	143336323	143344739	8417	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
11880	ENST00000637658.2_5	ENST00000644123.1_3	chr12	2958211	2966205	TEX52	-	protein_coding	chr12	2921787	2968957	ITFG2	+	nonsense_mediated_decay	7994	opposite	12662_ID	chr12	2958212	2966205	7994	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
11883	ENST00000637854.1_3	ENST00000325301.7_4	chr22	39900235	39900448	AL022312.1	+	protein_coding	chr22	39898294	39914137	MIEF1	+	protein_coding	213	same	4473_ID	chr22	39900236	39900448	213	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	2	6
11899	ENST00000638815.1_2	ENST00000639059.1_2	chr15	22358191	22371172	OR4M2	+	processed_transcript	chr15	22303183	22383808	AC134980.2	+	protein_coding	12981	same	9393_ID	chr15	22358192	22371172	12981	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
11960	ENST00000641922.1_2	ENST00000427531.6_2	chr6	152433893	152439532	AL078582.1	+	lncRNA	chr6	152130241	152450754	ESR1	+	protein_coding	5639	same	4660_ID	chr6	152433894	152439532	5639	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
11970	ENST00000642100.1_3	ENST00000645463.1_1	chr8	128091139	128197488	CASC19	-	lncRNA	chr8	127570137	128305107	PCAT1	+	lncRNA	154848	opposite	6554_ID	chr8	128091140	128197488	106349	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
12008	ENST00000646931.3_3	ENST00000669711.1_3	chr10	97667731	97793502	CC2D2B	+	protein_coding	chr10	97492732	97849996	ENTPD1-AS1	-	lncRNA	126143	opposite	6561_ID	chr10	97667732	97793502	125771	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
12011	ENST00000647225.1_1	ENST00000644134.1_3	chr1	192685261	192685783	RPS27AP5	+	protein_coding	chr1	192460581	192894845	AL390957.1	-	lncRNA	522	opposite	11958_ID	chr1	192685262	192685783	522	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
12037	ENST00000648073.1_1	ENST00000493214.2_3	chr3	153158647	153220482	LINC02877	+	lncRNA	chr3	153102897	153480315	LINC02006	-	lncRNA	70842	opposite	7813_ID	chr3	153158648	153220482	61835	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
12061	ENST00000648356.1_1	ENST00000211936.10_3	chr6	27422346	27425354	AL021918.4	+	lncRNA	chr6	27418521	27440897	ZNF184	-	protein_coding	3008	opposite	4463_ID	chr6	27422347	27425354	3008	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
12069	ENST00000648447.1_3	ENST00000452959.6_1	chr3	39536327	39544058	AC092058.1	-	lncRNA	chr3	39509194	39570970	MOBP	+	nonsense_mediated_decay	7731	opposite	3034_ID	chr3	39536328	39544058	7731	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
12078	ENST00000648578.1_2	ENST00000404460.5_1	chr2	131949213	131966784	AC131180.1	-	lncRNA	chr2	131862925	132111282	PLEKHB2	+	protein_coding	17571	opposite	4085_ID	chr2	131949214	131966784	17571	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
12094	ENST00000648709.1_3	ENST00000655302.1_1	chr6	135949926	135955819	AL035604.1	-	lncRNA	chr6	135818929	136135128	LINC00271	+	lncRNA	5895	opposite	4613_ID	chr6	135949927	135955819	5893	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
12095	ENST00000648746.1_1	ENST00000372827.8_4	chr1	40245640	40247090	BMP8B-AS1	+	lncRNA	chr1	40222853	40254537	BMP8B	-	protein_coding	1450	opposite	6425_ID	chr1	40245641	40247090	1450	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
12105	ENST00000648930.1_1	ENST00000368814.8_4	chr1	151857726	151871809	AL450992.2	+	lncRNA	chr1	151843341	151881987	THEM4	-	protein_coding	14083	opposite	5663_ID	chr1	151857727	151871809	14083	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
12117	ENST00000649080.1_3	ENST00000254730.11_2	chr3	127900244	127913295	AL449214.1	-	lncRNA	chr3	127872323	128127489	EEFSEC	+	protein_coding	13051	opposite	5641_ID	chr3	127900245	127913295	13051	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
12120	ENST00000649140.1_1	ENST00000309137.13_4	chr16	57211260	57215302	AC009090.6	+	lncRNA	chr16	57186377	57219951	PSME3IP1	-	protein_coding	4042	opposite	862_ID	chr16	57211261	57215302	4042	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
12126	ENST00000649256.2_2	ENST00000587340.5_5	chr19	56784116	56821823	EDDM13	+	protein_coding	chr19	56732680	56879752	ZSCAN5A	-	protein_coding	37707	opposite	6870_ID	chr19	56784117	56821823	37707	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
12141	ENST00000649534.1_3	ENST00000578921.6_2	chr18	9840336	9841556	AC006238.2	-	lncRNA	chr18	9708297	9862548	RAB31	+	protein_coding	1220	opposite	444_ID	chr18	9840337	9841556	1220	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
12142	ENST00000649560.2_2	ENST00000654635.1_3	chr3	8121043	8167225	AC018832.1	+	lncRNA	chr3	7992949	8543358	LMCD1-AS1	-	lncRNA	46217	opposite	1669_ID	chr3	8121044	8167225	46182	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
12150	ENST00000649912.1_2	ENST00000347364.7_3	chr20	10401193	10401385	AL034430.2	-	protein_coding	chr20	10381656	10414870	MKKS	-	protein_coding	192	same	4589_ID	chr20	10401194	10401385	192	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	2	6
12182	ENST00000650564.1_1	ENST00000652959.1_3	chr16	52617605	52622791	AC026462.5	+	lncRNA	chr16	52586093	52686044	CASC16	-	lncRNA	5186	opposite	2152_ID	chr16	52617606	52622791	5186	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
12199	ENST00000650922.1_3	ENST00000676153.1_1	chr1	239872074	239933430	CHRM3-AS2	-	retained_intron	chr1	239549867	240078750	CHRM3	+	protein_coding	66750	opposite	6649_ID	chr1	239872075	239933430	61356	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
12206	ENST00000651045.1_2	ENST00000650609.1_3	chr7	74938328	74944219	SPDYE14	+	protein_coding	chr7	74925042	74954642	AC211476.5	-	lncRNA	5891	opposite	12518_ID	chr7	74938329	74944219	5891	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
12257	ENST00000652191.1_3	ENST00000579793.6_2	chr1	145209154	145282798	NOTCH2NLC	+	protein_coding	chr1	145209118	145291654	NOTCH2NLA	+	protein_coding	76776	same	9279_ID	chr1	145209155	145282798	73644	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
12281	ENST00000652542.1_1	ENST00000486740.6_2	chrX	101906019	101914002	GPRASP1	+	protein_coding	chrX	101854464	101969599	ARMCX5-GPRASP2	+	lncRNA	7992	same	7171_ID	chrX	101906020	101914002	7983	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
12284	ENST00000652549.1_3	ENST00000494263.5_1	chr2	219664451	219667277	AC009974.2	-	lncRNA	chr2	219646471	219680011	CYP27A1	+	retained_intron	2826	opposite	1015_ID	chr2	219664452	219667277	2826	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
12286	ENST00000652581.1_3	ENST00000652102.1_1	chrX	49136139	49137903	AC232271.2	-	lncRNA	chrX	49126676	49157879	PPP1R3F	+	nonsense_mediated_decay	1764	opposite	4254_ID	chrX	49136140	49137903	1764	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
12309	ENST00000653098.1_1	ENST00000323944.9_3	chr14	25287590	25289363	AL161663.2	+	lncRNA	chr14	25278867	25519503	STXBP6	-	protein_coding	1773	opposite	5155_ID	chr14	25287591	25289363	1773	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	6
12317	ENST00000653299.1_3	ENST00000657856.1_1	chr6	43371552	43376079	AL359813.2	-	lncRNA	chr6	43337763	43393021	AL359813.1	+	lncRNA	4527	opposite	5496_ID	chr6	43371553	43376079	4527	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
12323	ENST00000653487.1_4	ENST00000668999.1_3	chr19	35339949	35351651	AC008555.4	-	lncRNA	chr19	35330042	35363383	AC008555.2	+	lncRNA	11702	opposite	747_ID	chr19	35339950	35351651	11702	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
12348	ENST00000654308.1_3	ENST00000503611.5_1	chr4	159099319	159103958	AC098679.5	-	lncRNA	chr4	159091903	159124029	FAM198B-AS1	+	lncRNA	4639	opposite	3340_ID	chr4	159099320	159103958	4639	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
12353	ENST00000654430.1_1	ENST00000664407.1_3	chr1	177669667	177681410	LINC01741	+	lncRNA	chr1	177362183	177889287	AL136114.1	-	lncRNA	11752	opposite	7669_ID	chr1	177669668	177681410	11743	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
12354	ENST00000654444.1_3	ENST00000409642.8_4	chr2	150027074	150041084	AC009230.1	-	lncRNA	chr2	149895212	150071776	LYPD6B	+	protein_coding	14010	opposite	922_ID	chr2	150027075	150041084	14010	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
12359	ENST00000654632.1_1	ENST00000504578.2_1	chr5	96519530	96551778	AC008883.3	+	lncRNA	chr5	96424778	96772921	LIX1-AS1	+	lncRNA	32248	same	827_ID	chr5	96519531	96551778	32248	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
12360	ENST00000654640.1_1	ENST00000565706.2_4	chr15	34949936	34962713	AC100834.2	+	lncRNA	chr15	34943335	34963296	LINC02252	-	lncRNA	12777	opposite	3433_ID	chr15	34949937	34962713	12777	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
12362	ENST00000654727.1_1	ENST00000463053.1_3	chr22	51025301	51034063	CHKB-DT	+	lncRNA	chr22	51018785	51039884	CHKB	-	processed_transcript	12609	opposite	6638_ID	chr22	51025302	51034063	8762	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
12367	ENST00000654887.1_1	ENST00000490075.5_3	chr1	17302796	17304287	AL049569.2	+	lncRNA	chr1	17300996	17307116	MFAP2	-	processed_transcript	1491	opposite	4625_ID	chr1	17302797	17304287	1491	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
12384	ENST00000655170.1_1	ENST00000576738.1_3	chr17	77893213	77899798	LINC01978	+	lncRNA	chr17	77889050	77900524	LINC01979	-	lncRNA	6643	opposite	7709_ID	chr17	77893214	77899798	6585	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
12390	ENST00000655233.1_3	ENST00000627431.2_1	chr1	113521231	113542258	AL390242.1	-	lncRNA	chr1	113499445	113589673	SLC16A1-AS1	+	lncRNA	21027	opposite	5552_ID	chr1	113521232	113542258	21027	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
12416	ENST00000655870.1_1	ENST00000636307.1_3	chr7	155327658	155329520	AC009403.3	+	lncRNA	chr7	155293275	155437100	AC009403.2	-	lncRNA	1862	opposite	955_ID	chr7	155327659	155329520	1862	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
12428	ENST00000656004.1_1	ENST00000648572.1_3	chr6	89087998	89095166	AL139090.1	+	lncRNA	chr6	88887522	89130689	AL139042.1	-	lncRNA	7168	opposite	5004_ID	chr6	89087999	89095166	7168	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
12445	ENST00000656272.1_3	ENST00000647105.1_1	chr5	124329100	124331789	AC109458.2	-	lncRNA	chr5	124229052	124921977	LINC02240	+	lncRNA	2689	opposite	3758_ID	chr5	124329101	124331789	2689	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
12468	ENST00000656887.1_3	ENST00000669735.1_1	chr12	8435272	8439114	AC092745.4	-	lncRNA	chr12	8395742	8494644	AC092745.5	+	lncRNA	3842	opposite	3140_ID	chr12	8435273	8439114	3842	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
12514	ENST00000657795.1_1	ENST00000548458.6_1	chr12	105630115	105636951	AC078874.1	+	lncRNA	chr12	105629067	105764958	C12orf75	+	processed_transcript	6836	same	2599_ID	chr12	105630116	105636951	6836	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
12528	ENST00000658020.1_1	ENST00000473299.1_3	chr3	146639581	146645216	LINC02010	+	lncRNA	chr3	146627471	147088443	AC092957.1	-	lncRNA	5635	opposite	7713_ID	chr3	146639582	146645216	5635	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
12532	ENST00000658056.1_1	ENST00000661060.1_3	chr3	120552782	120590641	AC072026.3	+	lncRNA	chr3	120530376	120626899	AC072026.2	-	lncRNA	37859	opposite	2496_ID	chr3	120552783	120590641	37859	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
12609	ENST00000659355.1_1	ENST00000637011.1_3	chr16	54881227	54888903	AC106742.1	+	lncRNA	chr16	54881158	54908080	CRNDE	-	lncRNA	7676	opposite	3640_ID	chr16	54881228	54888903	7676	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
12654	ENST00000660331.1_3	ENST00000541323.1_2	chr8	17462175	17467778	AP006248.5	-	lncRNA	chr8	17433941	17500642	PDGFRL	+	protein_coding	5603	opposite	6309_ID	chr8	17462176	17467778	5603	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
12661	ENST00000660653.1_1	ENST00000654481.1_3	chr2	108145747	108172955	LINC01886	+	lncRNA	chr2	107999289	108364726	LINC01885	-	lncRNA	27208	opposite	7694_ID	chr2	108145748	108172955	27208	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
12663	ENST00000660701.1_3	ENST00000654635.1_3	chr3	8401029	8408113	AC023481.1	-	lncRNA	chr3	7992949	8543358	LMCD1-AS1	-	lncRNA	7084	same	1951_ID	chr3	8401030	8408113	7084	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
12672	ENST00000660868.1_3	ENST00000380472.7_2	chr6	2989569	2999838	NQO2-AS1	-	lncRNA	chr6	2988879	3015877	NQO2	+	protein_coding	10270	opposite	9298_ID	chr6	2989570	2999838	10269	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
12707	ENST00000661594.1_1	ENST00000667782.1_3	chr2	78142995	78145137	LINC01851	+	lncRNA	chr2	77879150	78517595	AC012494.1	-	lncRNA	2142	opposite	7690_ID	chr2	78142996	78145137	2142	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
12709	ENST00000661708.1_3	ENST00000643626.1_1	chr16	51231714	51302028	AC137494.1	-	lncRNA	chr16	51186035	51390577	AC087564.1	+	lncRNA	70314	opposite	4164_ID	chr16	51231715	51302028	70314	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
12736	ENST00000662130.1_3	ENST00000647474.1_1	chr17	10644573	10672406	AC015908.3	-	lncRNA	chr17	10633093	10784212	AC015908.7	+	lncRNA	27833	opposite	1496_ID	chr17	10644574	10672406	27833	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
12754	ENST00000662649.1_1	ENST00000537989.5_4	chr6	90782769	90789453	AL158136.1	+	lncRNA	chr6	90636247	91006627	BACH2	-	protein_coding	6684	opposite	5097_ID	chr6	90782770	90789453	6684	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
12770	ENST00000662966.1_3	ENST00000659615.1_3	chr9	110188685	110191023	AL359552.1	+	lncRNA	chr9	110182471	110228889	LINC01509	-	lncRNA	7205	opposite	5490_ID	chr9	110188686	110191023	2338	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	6
12772	ENST00000663005.1_4	ENST00000522566.5_5	chr8	104331619	104332334	AC025370.2	-	lncRNA	chr8	104310660	104345045	FZD6	+	protein_coding	715	opposite	2082_ID	chr8	104331620	104332334	715	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
12789	ENST00000663266.1_1	ENST00000658738.1_3	chr2	45400860	45403074	AC009236.1	+	lncRNA	chr2	45391956	45550528	LINC01121	-	lncRNA	2214	opposite	926_ID	chr2	45400861	45403074	2214	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
12795	ENST00000663390.1_1	ENST00000486740.6_2	chrX	101914910	101918383	AL035427.2	+	lncRNA	chrX	101854464	101969599	ARMCX5-GPRASP2	+	lncRNA	3473	same	4605_ID	chrX	101914911	101918383	3473	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
12817	ENST00000663941.1_3	ENST00000660576.1_1	chr3	181090519	181160271	AC068308.1	-	lncRNA	chr3	180707557	181460672	SOX2-OT	+	lncRNA	69866	opposite	2401_ID	chr3	181090520	181160271	69752	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
12825	ENST00000664082.1_1	ENST00000414691.8_5	chr6	11722779	11732156	AL022724.3	+	lncRNA	chr6	11713755	11779036	ADTRP	-	protein_coding	9377	opposite	4489_ID	chr6	11722780	11732156	9377	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	6
12836	ENST00000664346.1_3	ENST00000523149.5_1	chr8	28547731	28559547	EXTL3-AS1	-	lncRNA	chr8	28480245	28608420	EXTL3	+	protein_coding	11816	opposite	6948_ID	chr8	28547732	28559547	11816	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
12870	ENST00000665007.1_3	ENST00000397601.5_2	chr13	97931021	97947654	AL161430.1	-	lncRNA	chr13	97873687	98046374	MBNL2	+	protein_coding	16633	opposite	5147_ID	chr13	97931022	97947654	16633	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
12898	ENST00000665618.1_1	ENST00000667782.1_3	chr2	78315854	78354932	AC012494.2	+	lncRNA	chr2	77879150	78517595	AC012494.1	-	lncRNA	39078	opposite	1394_ID	chr2	78315855	78354932	39078	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
12901	ENST00000665660.1_3	ENST00000309502.7_3	chr1	203084595	203097495	AC105940.2	-	lncRNA	chr1	203059781	203136532	ADORA1	+	protein_coding	12900	opposite	3626_ID	chr1	203084596	203097495	12900	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
12911	ENST00000665850.1_3	ENST00000437723.1_1	chr15	65170626	65174584	AC069368.2	-	lncRNA	chr15	65134146	65223118	AC069368.1	+	protein_coding	3958	opposite	2488_ID	chr15	65170627	65174584	3958	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
12932	ENST00000666468.1_3	ENST00000649298.1_1	chr18	61747222	61816322	LINC00305	-	lncRNA	chr18	61708788	61826527	LINC01924	+	lncRNA	69100	opposite	7538_ID	chr18	61747223	61816322	69100	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
12988	ENST00000667641.1_1	ENST00000302824.7_4	chr15	81608146	81612716	AC103858.3	+	lncRNA	chr15	81601393	81616482	STARD5	-	protein_coding	5453	opposite	3486_ID	chr15	81608147	81612716	4570	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	6
13002	ENST00000667867.1_1	ENST00000482142.5_3	chr3	118207722	118210607	AC068633.2	+	lncRNA	chr3	117723665	118276515	AC068633.1	-	lncRNA	2885	opposite	2428_ID	chr3	118207723	118210607	2885	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
13013	ENST00000668057.1_3	ENST00000659668.1_1	chr8	89822177	89825373	AC090578.3	-	lncRNA	chr8	89554941	89899802	AC090578.1	+	lncRNA	3196	opposite	2912_ID	chr8	89822178	89825373	3196	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
13035	ENST00000668812.1_3	ENST00000638062.1_1	chr9	35922155	35925551	AL135841.1	-	lncRNA	chr9	35909488	35937150	SPAAR	+	nonsense_mediated_decay	3396	opposite	4876_ID	chr9	35922156	35925551	3396	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
13044	ENST00000668885.1_3	ENST00000650234.1_1	chr15	96006815	96037072	AC027013.1	-	lncRNA	chr15	95869756	96050239	LINC00924	+	lncRNA	30257	opposite	2186_ID	chr15	96006816	96037072	30257	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
13050	ENST00000668993.1_3	ENST00000645463.1_1	chr8	128265457	128269875	AC018714.2	-	lncRNA	chr8	127570137	128305107	PCAT1	+	lncRNA	4418	opposite	1653_ID	chr8	128265458	128269875	4418	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
13075	ENST00000669357.1_3	ENST00000667197.1_1	chr5	61028617	61031542	C5orf64-AS1	-	lncRNA	chr5	60933592	61089228	C5orf64	+	lncRNA	2942	opposite	6513_ID	chr5	61028618	61031542	2925	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
13088	ENST00000669692.1_3	ENST00000335953.9_2	chr11	114030512	114031888	AP002755.1	-	lncRNA	chr11	113930432	114127487	ZBTB16	+	protein_coding	1376	opposite	6198_ID	chr11	114030513	114031888	1376	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
13094	ENST00000669817.1_3	ENST00000654481.1_3	chr2	108315192	108363397	AC064869.1	-	lncRNA	chr2	107999289	108364726	LINC01885	-	lncRNA	48205	same	2365_ID	chr2	108315193	108363397	48205	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
13113	ENST00000670381.1_1	ENST00000611255.5_5	chr10	77352401	77387878	AL589863.2	+	lncRNA	chr10	77191381	78319926	LRMDA	+	protein_coding	35477	same	5743_ID	chr10	77352402	77387878	35477	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
13122	ENST00000670607.1_3	ENST00000652014.1_1	chr12	91011535	91202525	AC112481.2	-	lncRNA	chr12	90970271	91212080	LINC02822	+	lncRNA	190990	opposite	3823_ID	chr12	91011536	91202525	190990	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
13201	ENST00000674825.1_1	ENST00000592005.5_1	chr18	44554572	44556213	ELOA3	-	protein_coding	chr18	44497454	44624853	KATNAL2	+	protein_coding	1641	opposite	6898_ID	chr18	44554573	44556213	1641	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
13206	ENST00000675219.1_1	ENST00000592005.5_1	chr18	44549423	44550298	ELOA3B	-	protein_coding	chr18	44497454	44624853	KATNAL2	+	protein_coding	875	opposite	6899_ID	chr18	44549424	44550298	875	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
13212	ENST00000676072.1_1	ENST00000368102.5_4	chr1	159804306	159824861	SNHG28	-	lncRNA	chr1	159804263	159825137	AL590560.2	-	processed_transcript	20592	same	12147_ID	chr1	159804307	159824861	20555	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	6
13215	ENST00000676334.1_1	ENST00000330947.7_2	chr1	90045150	90045213	AC099569.1	+	protein_coding	chr1	89990387	90063420	LRRC8B	+	protein_coding	63	same	3384_ID	chr1	90045151	90045213	63	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	4	6
13216	ENST00000676383.1_1	ENST00000592005.5_1	chr18	44542730	44544371	ELOA3D	-	protein_coding	chr18	44497454	44624853	KATNAL2	+	protein_coding	1641	opposite	6901_ID	chr18	44542731	44544371	1641	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
24910	ENST00000287611.8_4	ENST00000599314.5_3	chr3	186435147	186462199	KNG1	+	protein_coding	chr3	186435037	186475457	AC068631.1	-	lncRNA	27063	opposite	7464_ID	chr3	186435148	186462199	27052	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
56910	ENST00000332663.3_1	ENST00000628444.1_3	chr15	22368477	22369561	AC135068.1	+	protein_coding	chr15	22303183	22383815	LINC02203	+	protein_coding	1084	same	4137_ID	chr15	22368478	22369561	1084	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
82710	ENST00000362367.1	ENST00000533372.1_3	chr12	49986886	49986996	RNU6-834P	+	snRNA	chr12	49976668	49999410	FAM186B	-	nonsense_mediated_decay	110	opposite	11541_ID	chr12	49986887	49986996	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
124510	ENST00000364730.1	ENST00000506254.5_3	chr3	139302946	139303287	RN7SKP124	-	misc_RNA	chr3	139279021	139396859	NMNAT3	-	nonsense_mediated_decay	341	same	9776_ID	chr3	139302947	139303287	341	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
14301	ENST00000367459.8_2	ENST00000644134.1_3	chr1	192544902	192549154	RGS1	+	protein_coding	chr1	192460581	192894845	AL390957.1	-	lncRNA	4262	opposite	9740_ID	chr1	192544903	192549154	4252	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
17061	ENST00000383988.1	ENST00000464978.5_1	chr6	88198162	88198270	RNU6-444P	+	snRNA	chr6	88180340	88221521	SLC35A1	+	processed_transcript	108	same	11249_ID	chr6	88198163	88198270	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
17411	ENST00000384101.1	ENST00000430014.1	chr1	144491441	144491605	RNVU1-5	-	snRNA	chr1	144456137	144521291	RP11-640M9.1	-	antisense	164	same	11830_ID	chr1	144491442	144491605	164	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
17681	ENST00000384188.1	ENST00000635306.1_3	chr2	49460932	49461038	RNU6-439P	-	snRNA	chr2	49429264	49679034	AC009975.2	-	lncRNA	106	same	11242_ID	chr2	49460933	49461038	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
18671	ENST00000384474.1	ENST00000379864.6_4	chr13	36841304	36841411	RNU6-71P	+	snRNA	chr13	36796144	36871961	CCDC169	-	protein_coding	107	opposite	11449_ID	chr13	36841305	36841411	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
29761	ENST00000408879.1	ENST00000647441.1_2	chr20	18591690	18591811	RNU6ATAC34P	-	snRNA	chr20	18568585	18747288	DTD1	+	nonsense_mediated_decay	121	opposite	11677_ID	chr20	18591691	18591811	121	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
31281	ENST00000410619.1	ENST00000651573.1_3	chr5	73567506	73567590	AC106732.1	-	miRNA	chr5	73554513	73617064	LINC01335	-	lncRNA	84	same	3637_ID	chr5	73567507	73567590	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
34471	ENST00000415333.1_1	ENST00000636307.1_3	chr7	155302977	155311318	AC008060.2	+	lncRNA	chr7	155293275	155437100	AC009403.2	-	lncRNA	8341	opposite	688_ID	chr7	155302978	155311318	8341	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
37601	ENST00000423637.1_3	ENST00000649121.1_2	chr9	117881817	117900688	AL162425.1	-	lncRNA	chr9	117731863	118003268	DELEC1	+	lncRNA	18871	opposite	5199_ID	chr9	117881818	117900688	18871	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
38971	ENST00000428285.1_3	ENST00000647441.1_2	chr20	18655038	18679353	DTD1-AS1	-	lncRNA	chr20	18568585	18747288	DTD1	+	nonsense_mediated_decay	24315	opposite	6856_ID	chr20	18655039	18679353	24315	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
40751	ENST00000433113.1_1	ENST00000669711.1_3	chr10	97593264	97633515	AL365273.1	+	lncRNA	chr10	97492732	97849996	ENTPD1-AS1	-	lncRNA	40251	opposite	5537_ID	chr10	97593265	97633515	40251	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
42721	ENST00000438597.1_3	ENST00000638983.1_4	chr1	211305929	211306716	KCNH1-IT1	-	lncRNA	chr1	211031504	211307488	AL590132.1	-	protein_coding	787	same	7412_ID	chr1	211305930	211306716	787	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
42801	ENST00000438893.2_1	ENST00000411974.5_6	chr22	24994020	24995365	AP000356.1	+	lncRNA	chr22	24990780	25011074	GGT1	+	protein_coding	1345	same	5983_ID	chr22	24994021	24995365	1345	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
44201	ENST00000442482.1_3	ENST00000621802.1_1	chr20	42178028	42179589	Z98752.1	-	lncRNA	chr20	42168810	42198138	Z98752.3	+	nonsense_mediated_decay	1561	opposite	12975_ID	chr20	42178029	42179589	1561	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
45311	ENST00000446246.1_3	ENST00000474070.5_3	chr7	29239155	29248586	CHN2-AS1	-	lncRNA	chr7	29186212	29519972	CHN2	+	nonsense_mediated_decay	9431	opposite	6645_ID	chr7	29239156	29248586	9431	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
46451	ENST00000449258.1_3	ENST00000374531.6_5	chr9	112522639	112534323	AL158829.1	-	lncRNA	chr9	112403067	112708983	PALM2AKAP2	+	protein_coding	11684	opposite	5116_ID	chr9	112522640	112534323	11684	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
51161	ENST00000459460.1	ENST00000415011.6_3	chr2	202006626	202006689	RNU7-45P	+	snRNA	chr2	202005011	202022546	CFLAR-AS1	-	lncRNA	63	opposite	11783_ID	chr2	202006627	202006689	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
51741	ENST00000461895.2	ENST00000506254.5_3	chr3	139328512	139328781	RN7SL724P	-	misc_RNA	chr3	139279021	139396859	NMNAT3	-	nonsense_mediated_decay	269	same	10384_ID	chr3	139328513	139328781	269	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
55611	ENST00000487715.2	ENST00000651573.1_3	chr5	73613810	73614107	RN7SL814P	+	misc_RNA	chr5	73554513	73617064	LINC01335	-	lncRNA	297	opposite	10453_ID	chr5	73613811	73614107	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
56621	ENST00000494527.2	ENST00000647441.1_2	chr20	18572973	18573261	RN7SL638P	+	misc_RNA	chr20	18568585	18747288	DTD1	+	nonsense_mediated_decay	288	same	10326_ID	chr20	18572974	18573261	288	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
59391	ENST00000507918.5_2	ENST00000514917.3_4	chr7	102191678	102202516	SPDYE2	+	protein_coding	chr7	102181947	102232891	AC093668.1	-	protein_coding	11077	opposite	12521_ID	chr7	102191679	102202516	10838	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
60011	ENST00000509974.1_1	ENST00000513421.5_5	chr4	54459122	54470214	LNX1-AS2	+	lncRNA	chr4	54439792	54567572	LNX1	-	protein_coding	11092	opposite	7847_ID	chr4	54459123	54470214	11092	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
61001	ENST00000512833.1_1	ENST00000641499.1_4	chr4	145772723	145795939	AC109811.1	+	lncRNA	chr4	145753059	146019366	ANAPC10	-	nonsense_mediated_decay	23216	opposite	3777_ID	chr4	145772724	145795939	23216	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	6
62511	ENST00000516038.1	ENST00000665764.1_1	chr9	120493652	120493749	snoZ13_snr52	-	snoRNA	chr9	120466680	120834592	AL160272.2	+	nonsense_mediated_decay	97	opposite	12474_ID	chr9	120493653	120493749	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
65741	ENST00000516967.1	ENST00000533109.6_4	chr11	122319917	122320039	RNU4ATAC10P	+	snRNA	chr11	122025462	122427429	MIR100HG	-	lncRNA	122	opposite	10721_ID	chr11	122319918	122320039	122	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
66771	ENST00000517226.1	ENST00000533109.6_4	chr11	122322181	122322307	RNU4ATAC5P	+	snRNA	chr11	122025462	122427429	MIR100HG	-	lncRNA	126	opposite	10732_ID	chr11	122322182	122322307	126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
67051	ENST00000517275.1	ENST00000593039.5_7	chr17	33420927	33420992	RNU6-840P	+	snRNA	chr17	33338367	33448512	AC004223.3	-	protein_coding	65	opposite	11547_ID	chr17	33420928	33420992	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
69931	ENST00000526777.1_5	ENST00000533109.6_4	chr11	122165897	122178727	AP000755.2	+	lncRNA	chr11	122025462	122427429	MIR100HG	-	lncRNA	12830	opposite	6020_ID	chr11	122165898	122178727	12830	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
70121	ENST00000527100.1_3	ENST00000533109.6_4	chr11	122165645	122172471	AP000755.1	-	lncRNA	chr11	122025462	122427429	MIR100HG	-	lncRNA	6826	same	6019_ID	chr11	122165646	122172471	6826	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
71701	ENST00000532619.1_1	ENST00000648261.1_1	chr11	118303835	118305921	AP001267.2	-	lncRNA	chr11	118272321	118353452	AP001267.5	+	protein_coding	2086	opposite	6112_ID	chr11	118303836	118305921	2086	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
71821	ENST00000533009.1_3	ENST00000054950.4_3	chr11	32118688	32126637	AL078612.1	-	lncRNA	chr11	32112619	32127268	RCN1	+	protein_coding	7949	opposite	4669_ID	chr11	32118689	32126637	7949	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	6
77401	ENST00000558192.1_3	ENST00000560807.5_3	chr15	78573291	78574532	AC090607.4	-	lncRNA	chr15	78570176	78582371	WDR61	-	protein_coding	1241	same	2920_ID	chr15	78573292	78574532	1241	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
80831	ENST00000565513.1_3	ENST00000379390.10_2	chr15	83782368	83783318	AC024270.2	-	lncRNA	chr15	83776323	83806160	TM6SF1	+	protein_coding	950	opposite	2010_ID	chr15	83782369	83783318	950	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
83511	ENST00000572792.1_3	ENST00000576708.5_4	chr17	5267609	5274921	AC015727.1	-	lncRNA	chr17	5265108	5292170	NUP88	-	nonsense_mediated_decay	7312	same	1474_ID	chr17	5267610	5274921	7312	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
85821	ENST00000577850.1_3	ENST00000591482.1_1	chr17	26688622	26689881	AC002094.2	-	lncRNA	chr17	26684669	26708716	AC002094.1	+	lncRNA	1259	opposite	36_ID	chr17	26688623	26689881	1259	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
89481	ENST00000580047.1	ENST00000640723.1_4	chr17	45050382	45050466	MIR5089	+	miRNA	chr17	45006917	45052890	GOSR2	+	protein_coding	84	same	8827_ID	chr17	45050383	45050466	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
89601	ENST00000580150.1_3	ENST00000332968.11_5	chr18	47010905	47012519	AC100778.2	-	lncRNA	chr18	47008521	47018849	RPL17-C18orf32	-	protein_coding	1614	same	3409_ID	chr18	47010906	47012519	1614	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
90191	ENST00000580489.1	ENST00000648261.1_1	chr11	118301122	118301419	RN7SL86P	+	misc_RNA	chr11	118272321	118353452	AP001267.5	+	protein_coding	297	same	10493_ID	chr11	118301123	118301419	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
90421	ENST00000580591.1	ENST00000648506.1_3	chr3	75762166	75762465	RN7SL92P	-	misc_RNA	chr3	75727810	75834487	ZNF717	-	processed_transcript	299	same	10499_ID	chr3	75762167	75762465	299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
93601	ENST00000582325.1_1	ENST00000255389.10_4	chr17	17410664	17411622	AC020558.2	+	lncRNA	chr17	17408876	17495022	PEMT	-	protein_coding	958	opposite	1709_ID	chr17	17410665	17411622	958	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
94421	ENST00000582802.1	ENST00000657233.1_1	chr14	27377847	27377931	MIR4307	+	miRNA	chr14	27342297	27387800	MIR4307HG	+	lncRNA	84	same	8500_ID	chr14	27377848	27377931	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
94471	ENST00000582824.1	ENST00000648506.1_3	chr3	75787430	75787514	MIR4273	+	miRNA	chr3	75727810	75834487	ZNF717	-	processed_transcript	84	opposite	8472_ID	chr3	75787431	75787514	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
95181	ENST00000583200.1	ENST00000334805.10_3	chr11	72494574	72494637	MIR4692	+	miRNA	chr11	72465774	72504726	STARD10	-	protein_coding	63	opposite	8677_ID	chr11	72494575	72494637	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
98471	ENST00000585069.1	ENST00000322220.1_1	chr7	43190493	43190593	MIR3943	+	miRNA	chr7	43157494	43202786	HECW1-IT1	+	lncRNA	100	same	8440_ID	chr7	43190494	43190593	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
98501	ENST00000585070.1	ENST00000591482.1_1	chr17	26687676	26687757	MIR4723	+	miRNA	chr17	26684669	26708716	AC002094.1	+	lncRNA	81	same	8712_ID	chr17	26687677	26687757	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
99301	ENST00000586051.1_1	ENST00000316737.5_3	chr19	11432831	11434871	AC011472.3	+	lncRNA	chr19	11406823	11437672	TSPAN16	+	protein_coding	2040	same	1236_ID	chr19	11432832	11434871	2040	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
100611	ENST00000590309.1_1	ENST00000593039.5_7	chr17	33400849	33401393	AC004223.2	-	lncRNA	chr17	33338367	33448512	AC004223.3	-	protein_coding	544	same	112_ID	chr17	33400850	33401393	544	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
104601	ENST00000602426.1_1	ENST00000636437.1_4	chr6	106548014	106548468	AL022067.1	+	lncRNA	chr6	106493297	106773637	ATG5	-	protein_coding	454	opposite	4467_ID	chr6	106548015	106548468	454	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
104791	ENST00000602598.1_1	ENST00000648261.1_1	chr11	118286691	118287236	AP001267.4	+	lncRNA	chr11	118272321	118353452	AP001267.5	+	protein_coding	545	same	6114_ID	chr11	118286692	118287236	545	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
105431	ENST00000602975.1_1	ENST00000558745.5_3	chr15	77359995	77360667	AC090181.2	-	lncRNA	chr15	77338673	77376326	TSPAN3	-	protein_coding	672	same	2877_ID	chr15	77359996	77360667	672	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
110511	ENST00000609909.1_1	ENST00000437429.6_3	chr1	110912775	110915625	AL355488.1	+	lncRNA	chr1	110905472	110933704	SLC16A4	-	protein_coding	2850	opposite	5342_ID	chr1	110912776	110915625	2850	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
111811	ENST00000612426.1_1	ENST00000593039.5_7	chr17	33345678	33346010	AC004223.4	+	lncRNA	chr17	33338367	33448512	AC004223.3	-	protein_coding	332	opposite	113_ID	chr17	33345679	33346010	332	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
114831	ENST00000619665.1_1	ENST00000560851.2_2	chr15	81695366	81695911	AC109809.1	+	lncRNA	chr15	81624251	81809317	TMC3-AS1	+	lncRNA	545	same	3776_ID	chr15	81695367	81695911	545	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
115731	ENST00000621471.1_1	ENST00000560851.2_2	chr15	81627917	81628460	AC103858.2	+	lncRNA	chr15	81624251	81809317	TMC3-AS1	+	lncRNA	543	same	3485_ID	chr15	81627918	81628460	543	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
116661	ENST00000623663.2_2	ENST00000530059.2_5	chr1	54603418	54608653	AL357673.2	+	lncRNA	chr1	54598640	54618595	CDCP2	-	protein_coding	5235	opposite	5431_ID	chr1	54603419	54608653	5235	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
117231	ENST00000624923.1_1	ENST00000433835.3_4	chr22	24207434	24215464	AP000350.8	-	lncRNA	chr22	24204374	24237410	AP000350.4	+	protein_coding	8030	opposite	5979_ID	chr22	24207435	24215464	8030	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
119071	ENST00000638815.1_2	ENST00000628444.1_3	chr15	22358191	22371172	OR4M2	+	processed_transcript	chr15	22303183	22383815	LINC02203	+	protein_coding	12981	same	9392_ID	chr15	22358192	22371172	12981	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
119881	ENST00000642619.1_1	ENST00000474070.5_3	chr7	29231197	29233725	AC004593.1	-	lncRNA	chr7	29186212	29519972	CHN2	+	nonsense_mediated_decay	2528	opposite	144_ID	chr7	29231198	29233725	2528	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
122171	ENST00000651064.1_3	ENST00000587519.4_4	chr19	38780756	38783063	AC011479.4	-	lncRNA	chr19	38779790	38795550	AC011479.1	+	protein_coding	2307	opposite	1248_ID	chr19	38780757	38783063	2307	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
121311	ENST00000364574.1	ENST00000665764.1_1	chr9	120470273	120470380	RNU6-1082P	-	snRNA	chr9	120466680	120834592	AL160272.2	+	nonsense_mediated_decay	107	opposite	10819_ID	chr9	120470274	120470380	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
13322	ENST00000365223.1	ENST00000580261.5_4	chr18	47015614	47015678	SNORD58C	-	snoRNA	chr18	47014853	47018893	RPL17	-	protein_coding	64	same	12432_ID	chr18	47015615	47015678	64	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	6
16521	ENST00000383875.1	ENST00000580261.5_4	chr18	47017652	47017717	SNORD58A	-	snoRNA	chr18	47014853	47018893	RPL17	-	protein_coding	65	same	12426_ID	chr18	47017653	47017717	65	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
21472	ENST00000385070.1	ENST00000356578.8_5	chr11	2155363	2155439	MIR483	-	miRNA	chr11	2153767	2182439	INS-IGF2	-	nonsense_mediated_decay	76	same	8789_ID	chr11	2155364	2155439	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
3726	ENST00000422761.1_3	ENST00000606025.5_5	chr2	71168956	71175740	ATP6V1B1-AS1	-	lncRNA	chr2	71166447	71222466	AC007040.2	-	protein_coding	6794	same	6379_ID	chr2	71168957	71175740	6784	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	6	6
38621	ENST00000426937.5_4	ENST00000451200.6_2	chr3	42850974	42984284	KRBOX1	+	protein_coding	chr3	42850937	43073827	AC092042.3	+	processed_transcript	133310	same	7465_ID	chr3	42850975	42984284	133310	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	6
42691	ENST00000438597.1_3	ENST00000638880.1_3	chr1	211305929	211306716	KCNH1-IT1	-	lncRNA	chr1	211256213	211361875	AC092017.2	-	protein_coding	787	same	7411_ID	chr1	211305930	211306716	787	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
53211	ENST00000471592.2	ENST00000622785.4_1	chr4	154302878	154303167	RN7SL419P	-	misc_RNA	chr4	154265800	154336247	MND1	+	protein_coding	289	opposite	10169_ID	chr4	154302879	154303167	289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
108001	ENST00000607313.1	ENST00000580261.5_4	chr18	47018033	47018099	SNORD58B	-	snoRNA	chr18	47014853	47018893	RPL17	-	protein_coding	66	same	12429_ID	chr18	47018034	47018099	66	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	6
116411	ENST00000623188.1_3	ENST00000645813.1_3	chr21	45593986	45608568	FP565260.5	-	lncRNA	chr21	45592051	45614221	AP001056.2	-	lncRNA	14582	same	7074_ID	chr21	45593987	45608568	14582	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	6
42181	ENST00000437102.1_3	ENST00000426937.5_4	chr3	42897496	42917390	CYP8B1	-	protein_coding	chr3	42850974	42984284	KRBOX1	+	protein_coding	19894	opposite	6761_ID	chr3	42897497	42917390	19894	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
45891	ENST00000447834.1_3	ENST00000426937.5_4	chr3	42975743	42978277	KRBOX1-AS1	-	lncRNA	chr3	42850974	42984284	KRBOX1	+	protein_coding	2534	opposite	7467_ID	chr3	42975744	42978277	2534	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	6
4	ENST00000016171.6_4	ENST00000493385.5_1	chr10	101470624	101491884	COX15	-	protein_coding	chr10	101462314	101503080	CUTC	+	processed_transcript	21260	opposite	6695_ID	chr10	101470625	101491884	21260	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	5
24	ENST00000218758.9_3	ENST00000585493.5_3	chr19	11685474	11689800	ACP5	-	protein_coding	chr19	11670262	11725658	ZNF627	+	protein_coding	4349	opposite	4333_ID	chr19	11685475	11689800	4326	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
32	ENST00000222329.9_4	ENST00000594664.1_7	chr19	42751720	42759280	ERF	-	protein_coding	chr19	42738734	42759284	AC006486.1	-	protein_coding	7560	same	6920_ID	chr19	42751721	42759280	7560	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
49	ENST00000229134.5_4	ENST00000536914.1_1	chr12	68595128	68619590	IL26	-	protein_coding	chr12	68383308	68628466	IFNG-AS1	+	lncRNA	24462	opposite	7351_ID	chr12	68595129	68619590	24462	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
50	ENST00000229135.4_4	ENST00000536914.1_1	chr12	68548547	68553520	IFNG	-	protein_coding	chr12	68383308	68628466	IFNG-AS1	+	lncRNA	4973	opposite	7330_ID	chr12	68548548	68553520	4973	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
79	ENST00000241356.5_3	ENST00000369717.8_3	chr1	112042050	112046255	ADORA3	-	protein_coding	chr1	112025969	112106584	TMIGD3	-	protein_coding	4205	same	4362_ID	chr1	112042051	112046255	4205	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
97	ENST00000246186.8_2	ENST00000635104.1_3	chr20	33814492	33864801	MMP24	+	protein_coding	chr20	33789547	33865904	MMP24OS	-	processed_transcript	50309	opposite	9150_ID	chr20	33814493	33864801	50309	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
109	ENST00000250055.3_4	ENST00000423172.6_1	chr17	7491495	7493412	SOX15	-	protein_coding	chr17	7487170	7496107	MPDU1	+	protein_coding	1917	opposite	12493_ID	chr17	7491496	7493412	1917	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
119	ENST00000253754.8_2	ENST00000431054.5_6	chr5	131593388	131609147	PDLIM4	+	protein_coding	chr5	131546073	131630964	P4HA2	-	protein_coding	15759	opposite	9530_ID	chr5	131593389	131609147	15759	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
138	ENST00000256412.8_2	ENST00000519689.1_3	chr8	24241797	24263526	ADAMDEC1	+	protein_coding	chr8	24158397	24769586	AC120193.1	-	lncRNA	21729	opposite	4350_ID	chr8	24241798	24263526	21729	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
143	ENST00000257696.5_2	ENST00000462662.1_1	chr7	128095931	128098472	HILPDA	+	protein_coding	chr7	128095893	128133913	AC010655.4	+	lncRNA	2570	same	7238_ID	chr7	128095932	128098472	2541	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
169	ENST00000263847.6_4	ENST00000661394.1_1	chr11	59341870	59383247	OSBP	-	protein_coding	chr11	59333395	59406964	AP000442.1	+	lncRNA	41377	opposite	9478_ID	chr11	59341871	59383247	41377	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
190	ENST00000268655.5_2	ENST00000575785.2_3	chr16	3451214	3459364	ZNF174	+	protein_coding	chr16	3415111	3529550	AC025283.2	+	nonsense_mediated_decay	8150	same	13024_ID	chr16	3451215	3459364	8150	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
196	ENST00000272421.10_2	ENST00000606025.5_5	chr2	71205509	71212629	ANKRD53	+	protein_coding	chr2	71166447	71222466	AC007040.2	-	protein_coding	7120	opposite	5954_ID	chr2	71205510	71212629	7120	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
201	ENST00000273990.6_5	ENST00000515026.1_2	chr4	101107026	101111625	DDIT4L	-	protein_coding	chr4	100929227	101116256	H2AZ1-DT	+	lncRNA	4913	opposite	6781_ID	chr4	101107027	101111625	4599	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
202	ENST00000274353.10_2	ENST00000520388.5_3	chr5	78407631	78428111	BHMT	+	protein_coding	chr5	78351676	78531861	DMGDH	-	processed_transcript	20480	opposite	6413_ID	chr5	78407632	78428111	20480	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
227	ENST00000280357.12_5	ENST00000525987.5_1	chr11	112013982	112034817	IL18	-	protein_coding	chr11	111957626	112064528	AP002884.2	+	retained_intron	20844	opposite	7349_ID	chr11	112013983	112034817	20835	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
280	ENST00000294740.3_4	ENST00000637430.1_1	chr1	200374067	200379184	ZNF281	-	protein_coding	chr1	200302320	200447150	AC104461.1	+	lncRNA	5117	opposite	13033_ID	chr1	200374068	200379184	5117	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
281	ENST00000294818.2_2	ENST00000416424.5_3	chr1	165513236	165533194	LRRC52	+	protein_coding	chr1	165446077	165551392	LRRC52-AS1	-	lncRNA	19958	opposite	7862_ID	chr1	165513237	165533194	19958	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
283	ENST00000295148.9_4	ENST00000453731.1_1	chr2	24252216	24270261	WDCP	-	protein_coding	chr2	24247022	24286191	MFSD2B	+	nonsense_mediated_decay	20229	opposite	12906_ID	chr2	24252217	24270261	18045	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	5
291	ENST00000296046.4_2	ENST00000488190.1_3	chr3	148583082	148614990	CPA3	+	protein_coding	chr3	148568719	148677899	AC092979.1	-	lncRNA	31908	opposite	6697_ID	chr3	148583083	148614990	31908	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
309	ENST00000298681.5_2	ENST00000647921.1_3	chr14	21467451	21470030	SLC39A2	+	protein_coding	chr14	21464102	21482981	AL161668.3	-	lncRNA	2617	opposite	12097_ID	chr14	21467452	21470030	2579	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
312	ENST00000299575.5_2	ENST00000640345.1_3	chr16	81069446	81080955	ATMIN	+	protein_coding	chr16	81055920	81129889	AC092718.8	-	protein_coding	11509	opposite	6364_ID	chr16	81069447	81080955	11509	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
341	ENST00000303577.7_2	ENST00000628659.2_4	chr2	70314608	70316335	PCBP1	+	protein_coding	chr2	70190385	70330041	PCBP1-AS1	-	lncRNA	1727	opposite	9506_ID	chr2	70314609	70316335	1727	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
355	ENST00000304801.6_3	ENST00000653295.1_1	chr6	49753372	49754998	PGK2	-	protein_coding	chr6	49682037	49788212	AL121974.1	+	lncRNA	1626	opposite	9543_ID	chr6	49753373	49754998	1626	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
377	ENST00000309048.8_2	ENST00000400900.6_4	chr1	10490489	10502865	CENPS	+	protein_coding	chr1	10490158	10512210	CENPS-CORT	+	protein_coding	12376	same	6620_ID	chr1	10490490	10502865	12376	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
401	ENST00000311787.6_4	ENST00000442525.5_1	chr10	50339198	50342066	FAM170B	-	protein_coding	chr10	50329883	50359592	FAM170B-AS1	+	lncRNA	2868	opposite	6965_ID	chr10	50339199	50342066	2868	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
406	ENST00000312295.5_2	ENST00000356133.3_3	chr3	186915273	186919250	RTP1	+	protein_coding	chr3	186914877	186925417	AC007920.1	-	lncRNA	3977	opposite	11978_ID	chr3	186915274	186919250	3977	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
417	ENST00000313511.8_4	ENST00000675058.1_1	chr16	28853731	28857669	TUFM	-	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	3938	opposite	12824_ID	chr16	28853732	28857669	3938	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
420	ENST00000313737.5_1	ENST00000337682.9_4	chr12	31477249	31478763	FLJ13224	+	lncRNA	chr12	31433517	31479084	SINHCAF	-	protein_coding	1514	opposite	7039_ID	chr12	31477250	31478763	1514	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
438	ENST00000317058.8_2	ENST00000675058.1_1	chr16	28565240	28603111	SGF29	+	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	37876	same	12051_ID	chr16	28565241	28603111	37871	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
456	ENST00000319374.4_4	ENST00000557752.1_1	chr14	77597612	77608134	ZDHHC22	-	protein_coding	chr14	77564653	77691805	AC007375.2	+	nonsense_mediated_decay	11465	opposite	13010_ID	chr14	77597613	77608134	10522	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
466	ENST00000320542.4_4	ENST00000520739.5_1	chr8	29989186	30002181	MBOAT4	-	protein_coding	chr8	29953002	30034724	LEPROTL1	+	nonsense_mediated_decay	12995	opposite	7926_ID	chr8	29989187	30002181	12995	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
467	ENST00000320805.8_3	ENST00000675058.1_1	chr16	28962257	28978418	NFATC2IP	+	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	16291	same	9254_ID	chr16	28962258	28978418	16161	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
482	ENST00000322610.12_4	ENST00000675058.1_1	chr16	28858009	28885526	SH2B1	+	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	27613	same	12055_ID	chr16	28858010	28885526	27517	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
490	ENST00000323146.8_2	ENST00000507279.5_4	chr5	139944412	139948685	SLC35A4	+	protein_coding	chr5	139942027	139971708	AC116353.5	-	lncRNA	4273	opposite	12088_ID	chr5	139944413	139948685	4273	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
491	ENST00000323206.2_2	ENST00000575310.1_1	chr17	7338753	7340998	TMEM102	+	protein_coding	chr17	7323421	7347400	AC113189.2	+	lncRNA	2245	same	12711_ID	chr17	7338754	7340998	2245	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
496	ENST00000323684.4_2	ENST00000608254.1	chrX	22291029	22292578	CBLL2	+	protein_coding	chrX	22277913	23311263	RP11-40F8.2	-	lincRNA	1549	opposite	6557_ID	chrX	22291030	22292578	1549	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
501	ENST00000324873.8_4	ENST00000675058.1_1	chr16	28544028	28550295	NUPR1	-	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	6301	opposite	9317_ID	chr16	28544029	28550295	6267	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
502	ENST00000325113.9_2	ENST00000410108.5_3	chr11	196760	200258	ODF3	+	protein_coding	chr11	167783	207383	BET1L	-	protein_coding	3501	opposite	9326_ID	chr11	196761	200258	3498	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
519	ENST00000326965.7_4	ENST00000646912.1_1	chr6	159455499	159466184	TAGAP	-	protein_coding	chr6	159420917	159497987	AL035530.2	+	lncRNA	10685	opposite	12595_ID	chr6	159455500	159466184	10685	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
527	ENST00000327720.6_2	ENST00000556799.1_5	chr14	60975863	60979568	SIX6	+	protein_coding	chr14	60945074	60982261	C14orf39	-	protein_coding	3705	opposite	12067_ID	chr14	60975864	60979568	3705	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
531	ENST00000327968.7_2	ENST00000608254.1	chrX	23018076	23021706	DDX53	+	protein_coding	chrX	22277913	23311263	RP11-40F8.2	-	lincRNA	3630	opposite	6785_ID	chrX	23018077	23021706	3630	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
541	ENST00000329434.2_2	ENST00000527565.1_3	chr11	7817451	7818520	OR5P2	-	protein_coding	chr11	7726174	7904494	AC044810.3	-	lncRNA	1069	same	9462_ID	chr11	7817452	7818520	1069	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
557	ENST00000331808.5_4	ENST00000644232.1_3	chr16	11022747	11036325	DEXI	-	protein_coding	chr16	11016023	11036878	CIITA	+	nonsense_mediated_decay	13578	opposite	6790_ID	chr16	11022748	11036325	13578	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	5
579	ENST00000333765.4	ENST00000422809.5_1	chr21	30968359	31003067	GRIK1-AS2	+	protein_coding	chr21	30699449	31003071	BACH1	+	protein_coding	34708	same	7179_ID	chr21	30968360	31003067	34708	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	5
583	ENST00000333870.8_4	ENST00000575310.1_1	chr17	7328934	7330887	SPEM2	+	protein_coding	chr17	7323421	7347400	AC113189.2	+	lncRNA	1953	same	12526_ID	chr17	7328935	7330887	1953	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
593	ENST00000335715.9_4	ENST00000675058.1_1	chr16	28603263	28608371	SULT1A2	-	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	5108	opposite	12580_ID	chr16	28603264	28608371	5108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
597	ENST00000336257.7_4	ENST00000460606.1_5	chr16	75562432	75569068	CHST5	-	protein_coding	chr16	75562429	75579326	AC009163.3	-	nonsense_mediated_decay	6713	same	6652_ID	chr16	75562433	75569068	6636	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	5
598	ENST00000336600.6_6	ENST00000422059.5_3	chr6	43968321	43975349	C6orf223	+	lncRNA	chr6	43963459	44042389	AL109615.3	-	lncRNA	7033	opposite	6517_ID	chr6	43968322	43975349	7028	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
644	ENST00000342376.4_2	ENST00000400864.3_1	chr19	55249977	55264504	KIR2DL3	+	protein_coding	chr19	55236000	55309738	AC245128.1	+	lncRNA	14527	same	7445_ID	chr19	55249978	55264504	14527	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
648	ENST00000342878.3_2	ENST00000410108.5_3	chr11	193077	194575	SCGB1C1	+	protein_coding	chr11	167783	207383	BET1L	-	protein_coding	1498	opposite	12005_ID	chr11	193078	194575	1498	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
652	ENST00000343318.9_3	ENST00000453068.1_1	chr7	91770956	91808845	LRRD1	-	protein_coding	chr7	91763917	91810039	CYP51A1-AS1	+	lncRNA	37889	opposite	7869_ID	chr7	91770957	91808845	37889	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
671	ENST00000352896.9_6	ENST00000518570.2_2	chr6	119280994	119470552	FAM184A	-	protein_coding	chr6	119255934	119503910	AL137009.1	+	lncRNA	189625	opposite	6966_ID	chr6	119280995	119470552	189558	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
673	ENST00000354258.4_3	ENST00000395330.5_1	chr6	32812985	32821755	TAP1	-	protein_coding	chr6	32811912	32827362	PSMB9	+	protein_coding	8770	opposite	12596_ID	chr6	32812986	32821755	8770	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
678	ENST00000354489.7_4	ENST00000463448.5_1	chr6	10762955	10838772	MAK	-	protein_coding	chr6	10747991	10852986	TMEM14B	+	nonsense_mediated_decay	75831	opposite	7911_ID	chr6	10762956	10838772	75817	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	5
690	ENST00000355622.8_3	ENST00000642985.1_1	chr9	120466680	120487013	TLR4	+	protein_coding	chr9	120466434	120639342	AL160272.2	+	nonsense_mediated_decay	20561	same	12703_ID	chr9	120466681	120487013	20333	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	5
699	ENST00000357084.7_1	ENST00000675058.1_1	chr16	28889725	28915785	ATP2A1	+	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	26062	same	6369_ID	chr16	28889726	28915785	26060	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
705	ENST00000357796.7_2	ENST00000675058.1_1	chr16	28763107	28784128	NPIPB9	+	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	21021	same	9293_ID	chr16	28763108	28784128	21021	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
711	ENST00000358582.9_4	ENST00000587199.5_7	chr19	38158651	38183216	ZNF781	-	protein_coding	chr19	38138713	38183238	ZFP30	-	protein_coding	24565	same	13072_ID	chr19	38158652	38183216	24565	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
715	ENST00000358993.3_4	ENST00000662492.1_1	chrX	140335595	140336650	SPANXC	-	protein_coding	chrX	140271507	140737305	SPANXA2-OT1	+	lncRNA	1055	opposite	12505_ID	chrX	140335596	140336650	1055	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
752	ENST00000362116.1	ENST00000360737.4_1	chr22	46508628	46508702	MIRLET7A3	+	miRNA	chr22	46481882	46509808	MIRLET7BHG	+	lncRNA	74	same	9129_ID	chr22	46508629	46508702	74	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	5	5
757	ENST00000362131.1	ENST00000371950.3_1	chrX	114058016	114058127	MIR448	+	miRNA	chrX	113818554	114144624	HTR2C	+	protein_coding	111	same	8568_ID	chrX	114058017	114058127	111	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
808	ENST00000362280.1	ENST00000463624.1_3	chr3	52302291	52302379	MIRLET7G	-	miRNA	chr3	52294460	52322036	WDR82	-	protein_coding	88	same	9138_ID	chr3	52302292	52302379	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
812	ENST00000362295.2	ENST00000652620.1_1	chr9	96938233	96938325	MIRLET7A1	+	miRNA	chr9	96928547	96963162	MIRLET7A1HG	+	lncRNA	92	same	9127_ID	chr9	96938234	96938325	92	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
823	ENST00000362356.1	ENST00000523374.5_4	chrX	46377200	46377303	RNU6-50P	+	snRNA	chrX	46357161	46404876	ZNF674	-	protein_coding	103	opposite	11295_ID	chrX	46377201	46377303	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
830	ENST00000362396.1	ENST00000659148.1_3	chr20	37078012	37078146	SNORA60	+	snoRNA	chr20	37074985	37079583	SNHG11	+	lncRNA	134	same	12192_ID	chr20	37078013	37078146	134	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
832	ENST00000362409.1	ENST00000509663.2_2	chr5	61739002	61739109	RNU6-661P	+	snRNA	chr5	61602032	61833076	AC114982.2	+	nonsense_mediated_decay	107	same	11416_ID	chr5	61739003	61739109	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
848	ENST00000362550.1	ENST00000502344.5_3	chr4	15095390	15095718	RN7SKP170	-	misc_RNA	chr4	15006565	15429538	C1QTNF7-AS1	-	lncRNA	328	same	9801_ID	chr4	15095391	15095718	328	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
895	ENST00000362842.1	ENST00000553149.1_1	chr15	25417781	25417863	SNORD115-2	+	snoRNA	chr15	25362618	25418143	SNHG14	+	lncRNA	82	same	12292_ID	chr15	25417782	25417863	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
896	ENST00000362849.1	ENST00000396026.7_2	chr20	18275786	18276095	RN7SKP74	-	misc_RNA	chr20	18268926	18297638	ZNF133	+	protein_coding	309	opposite	9917_ID	chr20	18275787	18276095	309	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
904	ENST00000362914.1	ENST00000560827.5_5	chr15	56566727	56566834	RNU6-1287P	-	snRNA	chr15	56536206	56683583	TEX9	+	protein_coding	107	opposite	10981_ID	chr15	56566728	56566834	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
922	ENST00000363002.1	ENST00000264710.5_2	chr2	26265543	26265650	RNU6-942P	+	snRNA	chr2	26256952	26360323	RAB10	+	protein_coding	107	same	11624_ID	chr2	26265544	26265650	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
923	ENST00000363010.1	ENST00000265191.4_4	chr5	137458699	137458800	RNU6-888P	-	snRNA	chr5	137450863	137475117	NME5	-	protein_coding	101	same	11586_ID	chr5	137458700	137458800	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
926	ENST00000363036.1	ENST00000649142.1_1	chr3	40540381	40540494	RNU5B-2P	-	snRNA	chr3	40518621	40559020	ZNF620	+	nonsense_mediated_decay	113	opposite	10740_ID	chr3	40540382	40540494	113	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
942	ENST00000363143.1	ENST00000305921.8_2	chr17	58739693	58739798	RNU6-623P	-	snRNA	chr17	58677553	58743641	PPM1D	+	protein_coding	105	opposite	11387_ID	chr17	58739694	58739798	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
948	ENST00000363214.1	ENST00000311528.10_2	chr16	89627841	89627925	SNORD68	+	snoRNA	chr16	89627089	89630950	RPL13	+	protein_coding	84	same	12438_ID	chr16	89627842	89627925	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
961	ENST00000363238.1	ENST00000513489.5_3	chr4	85154809	85154916	RNU6-774P	+	snRNA	chr4	84717588	85205480	AC079160.1	-	lncRNA	107	opposite	11492_ID	chr4	85154810	85154916	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
974	ENST00000363314.1	ENST00000450716.5_5	chr3	192447343	192447505	RNU1-20P	-	snRNA	chr3	191861766	192485553	FGF12	-	protein_coding	162	same	10572_ID	chr3	192447344	192447505	162	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
982	ENST00000363373.1	ENST00000648809.1_1	chr5	6848239	6848575	RN7SKP79	-	misc_RNA	chr5	6839572	7180380	LINC02196	+	lncRNA	336	opposite	9923_ID	chr5	6848240	6848575	336	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
1005	ENST00000363490.1	ENST00000369717.8_3	chr1	112032938	112033045	RNU6-792P	-	snRNA	chr1	112025969	112106584	TMIGD3	-	protein_coding	107	same	11505_ID	chr1	112032939	112033045	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
1028	ENST00000363593.1	ENST00000437139.7_6	chr17	8076771	8076905	SNORD118	-	snoRNA	chr17	8075774	8079698	TMEM107	-	protein_coding	134	same	12358_ID	chr17	8076772	8076905	134	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
1040	ENST00000363658.1	ENST00000297313.8_5	chr8	54827278	54827384	RNU6-1331P	+	snRNA	chr8	54764354	54871863	RGS20	+	protein_coding	106	same	11014_ID	chr8	54827279	54827384	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
1047	ENST00000363693.1	ENST00000263856.9_4	chr2	86742326	86742431	RNU6-640P	-	snRNA	chr2	86730552	86790566	CHMP3	-	protein_coding	105	same	11398_ID	chr2	86742327	86742431	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
1054	ENST00000363727.1	ENST00000287218.9_2	chr6	37883348	37883518	RNU1-87P	+	snRNA	chr6	37787502	38122400	ZFAND3	+	protein_coding	170	same	10608_ID	chr6	37883349	37883518	170	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
1079	ENST00000363861.1	ENST00000534420.1_3	chr8	42928616	42928761	RNU1-124P	+	snRNA	chr8	42873566	42932477	AC110275.1	+	nonsense_mediated_decay	145	same	10560_ID	chr8	42928617	42928761	145	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
1084	ENST00000363886.1	ENST00000515296.1_1	chr5	139097569	139097675	RNU6-236P	-	snRNA	chr5	139064229	139124595	AC008667.1	+	lncRNA	106	opposite	11091_ID	chr5	139097570	139097675	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
1119	ENST00000364056.1	ENST00000368851.10_5	chr6	111412415	111412535	RNU6-960P	-	snRNA	chr6	111408705	111552397	SLC16A10	+	protein_coding	120	opposite	11638_ID	chr6	111412416	111412535	120	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
1144	ENST00000364208.1	ENST00000610767.4_1	chr22	37451072	37451387	RN7SKP214	-	misc_RNA	chr22	37447775	37459429	KCTD17	+	protein_coding	315	opposite	9825_ID	chr22	37451073	37451387	315	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
1146	ENST00000364225.1	ENST00000608254.1	chrX	22545951	22546058	RNU6-266P	+	snRNA	chrX	22277913	23311263	RP11-40F8.2	-	lincRNA	107	opposite	11114_ID	chrX	22545952	22546058	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
1175	ENST00000364394.1	ENST00000274065.9_2	chr4	152023208	152023280	SNORD73	+	snoRNA	chr4	152020779	152025794	RPS3A	+	protein_coding	72	same	12444_ID	chr4	152023209	152023280	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
1205	ENST00000364533.1	ENST00000526895.5_3	chr11	17097325	17097415	SNORD14B	-	snoRNA	chr11	17095935	17099253	RPS13	-	processed_transcript	90	same	12373_ID	chr11	17097326	17097415	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
1211	ENST00000364571.1	ENST00000426755.5_5	chr3	196435729	196435835	RNU6-646P	-	snRNA	chr3	196366645	196457964	PIGX	+	protein_coding	106	opposite	11405_ID	chr3	196435730	196435835	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
1228	ENST00000364663.1	ENST00000616265.4_1	chr4	140606280	140606581	RN7SKP237	-	misc_RNA	chr4	140586921	140661899	MGST2	+	protein_coding	301	opposite	9844_ID	chr4	140606281	140606581	301	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
1290	ENST00000364948.1	ENST00000510042.5_3	chr4	169926399	169926495	RNY4P17	+	misc_RNA	chr4	169784920	169931409	CBR4	-	nonsense_mediated_decay	96	opposite	11851_ID	chr4	169926400	169926495	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
1295	ENST00000364961.1	ENST00000553149.1_1	chr15	25415869	25415951	SNORD115-1	+	snoRNA	chr15	25362618	25418143	SNHG14	+	lncRNA	82	same	12282_ID	chr15	25415870	25415951	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
1299	ENST00000364999.1	ENST00000334025.3_3	chr5	63869395	63869497	RNU6-294P	+	snRNA	chr5	63801841	63908146	RGS7BP	+	protein_coding	102	same	11135_ID	chr5	63869396	63869497	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
1323	ENST00000365161.1	ENST00000396651.8_2	chr1	45243514	45243584	SNORD38A	+	snoRNA	chr1	45241211	45244451	RPS8	+	protein_coding	70	same	12404_ID	chr1	45243515	45243584	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
1353	ENST00000365367.1	ENST00000266943.11_5	chr13	29277838	29277944	RNU6-53P	-	snRNA	chr13	29274216	29293107	SLC46A3	-	protein_coding	106	same	11322_ID	chr13	29277839	29277944	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
1376	ENST00000365538.1	ENST00000648583.1_1	chr1	147806735	147806886	RNU1-122P	-	snRNA	chr1	147768001	147816764	AC245100.1	+	lncRNA	151	opposite	10558_ID	chr1	147806736	147806886	151	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
1388	ENST00000365609.1	ENST00000534855.5_3	chr2	25192256	25192346	SNORD14	-	snoRNA	chr2	25166504	25194963	DNAJC27	-	protein_coding	90	same	12371_ID	chr2	25192257	25192346	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
1413	ENST00000366451.3_1	ENST00000426664.6_3	chr3	129565890	129566800	AC083799.1	-	lncRNA	chr3	129366636	129612419	TMCC1	-	protein_coding	910	same	2709_ID	chr3	129565891	129566800	910	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
1459	ENST00000369989.2_1	ENST00000357393.6_5	chr1	109399838	109401146	SPATA42	+	lncRNA	chr1	109380281	109506106	AKNAD1	-	protein_coding	1308	opposite	12514_ID	chr1	109399839	109401146	1308	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
1466	ENST00000370518.4_2	ENST00000662492.1_1	chrX	140677834	140678889	SPANXA2	+	protein_coding	chrX	140271507	140737305	SPANXA2-OT1	+	lncRNA	1055	same	12504_ID	chrX	140677835	140678889	1055	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
1467	ENST00000370519.3_3	ENST00000662492.1_1	chrX	140671795	140673133	SPANXA1	-	protein_coding	chrX	140271507	140737305	SPANXA2-OT1	+	lncRNA	1338	opposite	12503_ID	chrX	140671796	140673133	1338	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
1472	ENST00000370996.5_3	ENST00000358293.7_2	chr20	58511717	58515360	PPP1R3D	-	protein_coding	chr20	58508818	58523735	FAM217B	+	protein_coding	3643	opposite	9617_ID	chr20	58511718	58515360	3643	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
1475	ENST00000371088.5_2	ENST00000478138.1_3	chr1	63989195	64038364	EFCAB7	+	protein_coding	chr1	63955773	64059392	ITGB3BP	-	processed_transcript	49322	opposite	6872_ID	chr1	63989196	64038364	49169	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
1510	ENST00000373657.2_5	ENST00000439980.7_2	chrX	71424506	71458877	ERCC6L	-	protein_coding	chrX	71401614	71522776	PIN4	+	nonsense_mediated_decay	34371	opposite	6918_ID	chrX	71424507	71458877	34371	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
1522	ENST00000374809.6_1	ENST00000628752.2_7	chr20	33292142	33301243	TP53INP2	+	protein_coding	chr20	33284944	33337385	NCOA6	-	protein_coding	9101	opposite	12764_ID	chr20	33292143	33301243	9101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
1523	ENST00000374884.3_4	ENST00000667050.1_3	chrX	62567106	62571211	SPIN4	-	protein_coding	chrX	62442871	62780822	LINC01278	-	lncRNA	4105	same	12528_ID	chrX	62567107	62571211	4105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
1529	ENST00000375363.8_2	ENST00000472216.2_3	chr2	169757800	169766510	G6PC2	+	protein_coding	chr2	169733747	169769881	SPC25	-	processed_transcript	8710	opposite	7094_ID	chr2	169757801	169766510	8710	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
1544	ENST00000376288.3_4	ENST00000259881.10_5	chr6	31082863	31088223	CDSN	-	protein_coding	chr6	31082576	31107869	PSORS1C1	+	protein_coding	5360	opposite	6609_ID	chr6	31082864	31088223	5360	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
1546	ENST00000376356.5_2	ENST00000648191.1_1	chr10	25305540	25315593	THNSL1	+	protein_coding	chr10	25241278	25450165	AL512598.2	+	lncRNA	10053	same	12678_ID	chr10	25305541	25315593	10053	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
1556	ENST00000377035.2_4	ENST00000537729.5_6	chr12	122656575	122658768	IL31	-	protein_coding	chr12	122652284	122676021	LRRC43	+	protein_coding	2193	opposite	7353_ID	chr12	122656576	122658768	2193	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
1557	ENST00000377049.4_2	ENST00000400900.6_4	chr1	10510087	10512055	CORT	+	protein_coding	chr1	10490158	10512210	CENPS-CORT	+	protein_coding	1968	same	6694_ID	chr1	10510088	10512055	1968	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	5
1559	ENST00000377208.7_5	ENST00000606429.5_1	chr13	79172496	79177687	POU4F1	-	protein_coding	chr13	78628989	79191460	OBI1-AS1	+	lncRNA	5191	opposite	9602_ID	chr13	79172497	79177687	5191	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
1610	ENST00000380466.6_3	ENST00000570547.5_1	chr17	7529554	7531187	SAT2	-	processed_transcript	chr17	7517381	7536672	SHBG	+	protein_coding	1643	opposite	11988_ID	chr17	7529555	7531187	1633	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
1617	ENST00000380846.3	ENST00000510419.1	chr4	75480628	75490486	AREGB	+	protein_coding	chr4	75418300	75514664	AC142293.3	-	antisense	9858	opposite	6329_ID	chr4	75480629	75490486	9858	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
1619	ENST00000381151.5_3	ENST00000488492.5_1	chr21	35445877	35478559	SLC5A3	+	protein_coding	chr21	35445523	35515334	MRPS6	+	processed_transcript	32682	same	12100_ID	chr21	35445878	35478559	32682	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
1623	ENST00000381361.4_1	ENST00000643349.1_3	chr11	2161746	2169896	IGF2-AS	+	lncRNA	chr11	2150341	2170833	AC132217.2	-	protein_coding	8166	opposite	7338_ID	chr11	2161747	2169896	8150	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	5
1628	ENST00000381698.3_1	ENST00000639028.1_1	chrX	49315935	49323252	GAGE12E	+	protein_coding	chrX	49315880	49332821	GAGE12F	+	protein_coding	7317	same	7100_ID	chrX	49315936	49323252	7317	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
1666	ENST00000383897.1	ENST00000322434.8_3	chr5	178311715	178311880	RNU1-39P	+	snRNA	chr5	178286953	178312021	ZNF354B	+	protein_coding	165	same	10583_ID	chr5	178311716	178311880	165	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
1689	ENST00000383967.1	ENST00000411954.1	chr1	143687358	143687519	RNVU1-3	+	snRNA	chr1	143687242	143716941	RP6-206I17.2	+	lincRNA	161	same	11828_ID	chr1	143687359	143687519	161	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
1716	ENST00000384022.1	ENST00000548851.5_2	chr12	58199936	58200043	RNU6-1083P	-	snRNA	chr12	58176569	58201854	TSFM	+	protein_coding	107	opposite	10820_ID	chr12	58199937	58200043	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
1717	ENST00000384027.1	ENST00000230050.4_2	chr6	133136445	133136518	SNORD101	+	snoRNA	chr6	133135707	133138703	RPS12	+	protein_coding	73	same	12220_ID	chr6	133136446	133136518	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
1730	ENST00000384064.1	ENST00000665117.1_1	chr1	147486648	147486815	RNU1-129P	-	snRNA	chr1	147485434	147498169	LINC02804	+	lncRNA	167	opposite	10563_ID	chr1	147486649	147486815	167	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
1744	ENST00000384118.1	ENST00000519570.5_1	chr5	164362167	164362274	RNU6-209P	-	snRNA	chr5	163723983	164598649	AC109466.1	+	lncRNA	107	opposite	11075_ID	chr5	164362168	164362274	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
1756	ENST00000384143.1	ENST00000261249.7_4	chr14	61441044	61441153	RNU6-398P	+	snRNA	chr14	61438158	61447797	TRMT5	-	protein_coding	109	opposite	11206_ID	chr14	61441045	61441153	109	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	5
1761	ENST00000384161.1	ENST00000611517.4_2	chr1	27651709	27651816	RNU6-48P	+	snRNA	chr1	27648635	27662890	TMEM222	+	protein_coding	107	same	11278_ID	chr1	27651710	27651816	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
1774	ENST00000384199.1	ENST00000396842.7_2	chr3	15474616	15474723	RNU6-1024P	-	snRNA	chr3	15469104	15484120	EAF1	+	protein_coding	107	opposite	10776_ID	chr3	15474617	15474723	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
1784	ENST00000384217.1	ENST00000652829.1_1	chr18	45696154	45696261	RNU6-708P	-	snRNA	chr18	45688409	45711096	AC105101.2	+	lncRNA	107	opposite	11442_ID	chr18	45696155	45696261	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
1844	ENST00000384427.1	ENST00000473299.1_3	chr3	146714393	146714500	RNU6-505P	-	snRNA	chr3	146627471	147088443	AC092957.1	-	lncRNA	107	same	11290_ID	chr3	146714394	146714500	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
1856	ENST00000384454.1	ENST00000412294.5_1	chr2	12551523	12551627	RNU6-843P	-	snRNA	chr2	12147253	12718474	MIR3681HG	+	lncRNA	104	opposite	11549_ID	chr2	12551524	12551627	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
1878	ENST00000384513.1	ENST00000647474.1_1	chr17	10761215	10761321	RNU6-1065P	-	snRNA	chr17	10633093	10784212	AC015908.7	+	lncRNA	106	opposite	10809_ID	chr17	10761216	10761321	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
1947	ENST00000384690.1	ENST00000396651.8_2	chr1	45244061	45244128	SNORD38B	+	snoRNA	chr1	45241211	45244451	RPS8	+	protein_coding	67	same	12405_ID	chr1	45244062	45244128	67	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
1977	ENST00000384769.1	ENST00000311549.10_1	chr13	27829200	27829272	SNORD102	+	snoRNA	chr13	27825445	27830705	RPL21	+	protein_coding	72	same	12221_ID	chr13	27829201	27829272	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
1987	ENST00000384815.1	ENST00000637125.1_1	chr12	65016288	65016385	MIR548C	+	miRNA	chr12	64900780	65088692	RASSF3	+	protein_coding	97	same	8892_ID	chr12	65016289	65016385	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
2002	ENST00000384830.1	ENST00000590353.1_2	chr17	66420591	66420689	MIR635	-	miRNA	chr17	66409763	66521090	AC007780.1	+	lncRNA	98	opposite	9040_ID	chr17	66420592	66420689	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
2081	ENST00000384963.1	ENST00000609454.5_3	chr22	38243684	38243781	MIR659	-	miRNA	chr22	38227866	38245334	ANKRD54	-	protein_coding	97	same	9063_ID	chr22	38243685	38243781	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
2124	ENST00000385030.1	ENST00000552864.5_3	chr12	81226311	81226408	MIR617	-	miRNA	chr12	81186298	81331704	LIN7A	-	protein_coding	97	same	9021_ID	chr12	81226312	81226408	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
2132	ENST00000385041.1	ENST00000637804.1_1	chr6	18572014	18572111	MIR548A1	+	miRNA	chr6	18522977	18674232	MIR548A1HG	+	lncRNA	97	same	8866_ID	chr6	18572015	18572111	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
2145	ENST00000385067.1	ENST00000659856.1_1	chr20	58883531	58883625	MIR646	+	miRNA	chr20	58713521	59228842	MIR646HG	+	lncRNA	94	same	9053_ID	chr20	58883532	58883625	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
2169	ENST00000385131.1	ENST00000658633.1_3	chrX	146363460	146363548	MIR514A2	-	miRNA	chrX	146360998	146367999	AL591022.1	-	lncRNA	88	same	8846_ID	chrX	146363461	146363548	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
2170	ENST00000385132.1	ENST00000658633.1_3	chrX	146366158	146366246	MIR514A3	-	miRNA	chrX	146360998	146367999	AL591022.1	-	lncRNA	88	same	8847_ID	chrX	146366159	146366246	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
2175	ENST00000385140.1	ENST00000360737.4_1	chr22	46509565	46509648	MIRLET7B	+	miRNA	chr22	46481882	46509808	MIRLET7BHG	+	lncRNA	83	same	9130_ID	chr22	46509566	46509648	83	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	5	5
2180	ENST00000385191.1	ENST00000436784.7_2	chr3	52328234	52328324	MIR135A1	-	miRNA	chr3	52321843	52329273	GLYCTK	+	protein_coding	90	opposite	8087_ID	chr3	52328235	52328324	90	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	5
2198	ENST00000385210.1	ENST00000609454.5_3	chr22	38240278	38240378	MIR658	-	miRNA	chr22	38227866	38245334	ANKRD54	-	protein_coding	100	same	9062_ID	chr22	38240279	38240378	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
2245	ENST00000385278.1	ENST00000372072.7_3	chrX	109298556	109298654	MIR652	+	miRNA	chrX	109245862	109421012	TMEM164	+	protein_coding	98	same	9058_ID	chrX	109298557	109298654	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
2249	ENST00000385287.1	ENST00000552864.5_3	chr12	81329514	81329612	MIR618	-	miRNA	chr12	81186298	81331704	LIN7A	-	protein_coding	98	same	9022_ID	chr12	81329515	81329612	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
2258	ENST00000385300.1	ENST00000602315.2_3	chr5	148808480	148808586	MIR143	+	miRNA	chr5	148786442	148812398	CARMN	+	lncRNA	106	same	8096_ID	chr5	148808481	148808586	106	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	4	5
2261	ENST00000386062.1	ENST00000274065.9_2	chr4	152024978	152025043	SNORD73A	+	snoRNA	chr4	152020779	152025794	RPS3A	+	protein_coding	65	same	12445_ID	chr4	152024979	152025043	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
2293	ENST00000390183.1	ENST00000495645.5_2	chr7	150935506	150935624	MIR671	+	miRNA	chr7	150929574	150935905	CHPF2	+	protein_coding	118	same	9071_ID	chr7	150935507	150935624	118	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	5	5
2317	ENST00000390666.4_3	ENST00000416046.2_1	chr5	112768249	112770686	TSSK1B	-	protein_coding	chr5	112658724	112772038	AC079465.1	+	lncRNA	2437	opposite	12804_ID	chr5	112768250	112770686	2437	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
2348	ENST00000390795.2	ENST00000434344.2_1	chr20	55035321	55035413	AL121914.1	-	miRNA	chr20	54987316	55035443	CASS4	+	protein_coding	92	opposite	4771_ID	chr20	55035322	55035413	92	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
2352	ENST00000390811.2	ENST00000371950.3_1	chrX	113873917	113874002	MIR764	+	miRNA	chrX	113818554	114144624	HTR2C	+	protein_coding	85	same	9083_ID	chrX	113873918	113874002	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
2358	ENST00000390845.1	ENST00000635857.1_3	chr6	105493436	105493543	RNU6-1106P	-	snRNA	chr6	105384490	105526477	LIN28B	+	protein_coding	107	opposite	10833_ID	chr6	105493437	105493543	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
2362	ENST00000390870.1	ENST00000544732.5_3	chr12	22348402	22348563	RNU1-149P	-	snRNA	chr12	22219352	22403721	ST8SIA1	-	processed_transcript	161	same	10568_ID	chr12	22348403	22348563	161	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
2421	ENST00000391118.1	ENST00000336418.9_4	chr15	90429716	90429823	RNU6-1111P	-	snRNA	chr15	90373830	90437226	AP3S2	-	protein_coding	107	same	10837_ID	chr15	90429717	90429823	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
2432	ENST00000391157.1	ENST00000663908.1_1	chr1	90719013	90719117	RNU6-695P	-	snRNA	chr1	90707645	90749746	AC098656.1	+	lncRNA	104	opposite	11436_ID	chr1	90719014	90719117	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
2433	ENST00000391158.1	ENST00000265191.4_4	chr5	137452261	137452369	RNU6-460P	+	snRNA	chr5	137450863	137475117	NME5	-	protein_coding	108	opposite	11260_ID	chr5	137452262	137452369	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
2434	ENST00000391166.1	ENST00000185206.12_6	chr6	45986481	45986588	RNU6-754P	+	snRNA	chr6	45866192	46048085	CLIC5	-	protein_coding	107	opposite	11477_ID	chr6	45986482	45986588	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
2461	ENST00000391369.1	ENST00000647444.2_4	chr1	32379173	32380745	AL136115.1	+	protein_coding	chr1	32372021	32403969	PTP4A2	-	protein_coding	20403	opposite	4889_ID	chr1	32379174	32380745	1572	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
2469	ENST00000391997.3_4	ENST00000622121.1_1	chr1	186412697	186430246	PDC	-	protein_coding	chr1	186404292	186439423	PDC-AS1	+	lncRNA	17549	opposite	9519_ID	chr1	186412698	186430246	17549	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
2498	ENST00000395461.7_3	ENST00000675058.1_1	chr16	28996146	29002104	LAT	+	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	5959	same	7512_ID	chr16	28996147	29002104	5958	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
2499	ENST00000395609.6_5	ENST00000675058.1_1	chr16	28615264	28634876	SULT1A1	-	retained_intron	chr16	28352754	29381593	AC009093.11	+	lncRNA	19682	opposite	12579_ID	chr16	28615265	28634876	19612	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
2525	ENST00000397911.5_3	ENST00000622352.3_4	chr21	46047009	46048295	KRTAP10-9	+	protein_coding	chr21	45993600	46058201	KRTAP10-4	+	protein_coding	1286	same	7489_ID	chr21	46047010	46048295	1286	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
2534	ENST00000398944.7_3	ENST00000675058.1_1	chr16	28390899	28415162	EIF3CL	-	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	24263	opposite	6888_ID	chr16	28390900	28415162	24263	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
2538	ENST00000399152.2_3	ENST00000651666.1_3	chr4	172474150	172485418	AC074254.1	-	lncRNA	chr4	172457184	172557228	LINC02174	-	lncRNA	11268	same	2575_ID	chr4	172474151	172485418	11268	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
2571	ENST00000401177.2	ENST00000295400.11_5	chr2	70682661	70682756	AC017084.1	-	miRNA	chr2	70674415	70780958	TGFA	-	protein_coding	95	same	1610_ID	chr2	70682662	70682756	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
2587	ENST00000401254.2	ENST00000667368.1_3	chr11	97783796	97783889	AP003730.1	-	miRNA	chr11	97749474	97827814	LINC02713	-	lncRNA	93	same	6272_ID	chr11	97783797	97783889	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
2589	ENST00000401257.1	ENST00000472470.5_1	chr7	115985908	115985998	AC002066.2	-	miRNA	chr7	115928126	116146162	CAV2	+	processed_transcript	90	opposite	34_ID	chr7	115985909	115985998	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
2634	ENST00000406462.6_2	ENST00000357393.6_5	chr1	109417971	109477167	GPSM2	+	protein_coding	chr1	109380281	109506106	AKNAD1	-	protein_coding	59196	opposite	7174_ID	chr1	109417972	109477167	59196	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
2647	ENST00000408084.2	ENST00000671358.1_3	chr7	7034845	7034949	AC079804.1	+	miRNA	chr7	6992255	7144113	AC079804.3	-	lncRNA	104	opposite	2679_ID	chr7	7034846	7034949	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
2661	ENST00000408119.1	ENST00000481847.5_3	chr20	44407336	44407462	RNU6ATAC38P	+	snRNA	chr20	44376582	44420571	WFDC3	-	processed_transcript	126	opposite	11680_ID	chr20	44407337	44407462	126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
2709	ENST00000408271.2	ENST00000467721.5_3	chr13	50937283	50937373	AL138696.1	-	miRNA	chr13	50656306	51102670	DLEU1	+	lncRNA	90	opposite	4967_ID	chr13	50937284	50937373	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
2746	ENST00000408352.1	ENST00000405709.7_3	chr7	110568373	110568453	AC005161.1	+	miRNA	chr7	110302699	111202548	IMMP2L	-	protein_coding	80	opposite	246_ID	chr7	110568374	110568453	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
2756	ENST00000408372.1	ENST00000370783.8_5	chrX	134029783	134029872	Z83826.1	+	miRNA	chrX	134021661	134049287	MOSPD1	-	protein_coding	89	opposite	12946_ID	chrX	134029784	134029872	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
2771	ENST00000408411.1	ENST00000532287.6_4	chr11	31457016	31457110	AC108456.1	-	miRNA	chr11	31453947	31531169	IMMP1L	-	protein_coding	94	same	3736_ID	chr11	31457017	31457110	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
2798	ENST00000408484.1	ENST00000587394.6_3	chr19	2234060	2234148	MIR1227	-	miRNA	chr19	2230082	2236271	PLEKHJ1	-	protein_coding	88	same	7986_ID	chr19	2234061	2234148	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
2837	ENST00000408573.1	ENST00000230050.4_2	chr6	133137940	133138016	SNORD100	+	snoRNA	chr6	133135707	133138703	RPS12	+	protein_coding	76	same	12219_ID	chr6	133137941	133138016	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
2840	ENST00000408578.1	ENST00000431432.1_1	chrX	142533992	142534122	AL030997.1	-	miRNA	chrX	142372753	142604631	AC239727.1	+	lncRNA	130	opposite	4502_ID	chrX	142533993	142534122	130	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
2841	ENST00000408579.1	ENST00000396703.6_3	chr3	23440990	23441060	AC092038.1	-	miRNA	chr3	23244817	23633285	UBE2E2	+	protein_coding	70	opposite	3029_ID	chr3	23440991	23441060	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
2850	ENST00000408604.1	ENST00000447166.2_3	chr2	27804755	27804813	AC074091.1	-	miRNA	chr2	27760252	27805587	C2orf16	+	protein_coding	58	opposite	2568_ID	chr2	27804756	27804813	58	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	5	5
2857	ENST00000408612.1	ENST00000648127.1_3	chr1	28905260	28905334	SNORD99	-	snoRNA	chr1	28905049	28909498	SNHG12	-	lncRNA	74	same	12471_ID	chr1	28905261	28905334	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
2881	ENST00000408667.1	ENST00000422842.1_1	chr10	56367633	56367717	MIR548F1	-	miRNA	chr10	56245989	56415811	AL353784.1	+	lncRNA	84	opposite	8894_ID	chr10	56367634	56367717	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
2932	ENST00000408783.1	ENST00000371950.3_1	chrX	113949649	113949761	MIR1298	+	miRNA	chrX	113818554	114144624	HTR2C	+	protein_coding	112	same	8065_ID	chrX	113949650	113949761	112	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
2943	ENST00000408813.1	ENST00000656301.1_1	chr7	22896231	22896305	SNORD93	+	snoRNA	chr7	22893777	22912564	SNHG26	+	lncRNA	74	same	12464_ID	chr7	22896232	22896305	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
2960	ENST00000408856.1	ENST00000222584.8_2	chr7	21510675	21510764	MIR1183	+	miRNA	chr7	21467700	21554440	SP4	+	protein_coding	89	same	7969_ID	chr7	21510676	21510764	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
2962	ENST00000408859.1	ENST00000608254.1	chrX	23138948	23139022	AC004673.1	-	miRNA	chrX	22277913	23311263	RP11-40F8.2	-	lincRNA	74	same	153_ID	chrX	23138949	23139022	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
2966	ENST00000408865.1	ENST00000381359.5_5	chr15	44085856	44085957	MIR1282	-	miRNA	chr15	44069297	44086793	SERF2	+	protein_coding	101	opposite	8041_ID	chr15	44085857	44085957	101	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	5
2981	ENST00000408967.2	ENST00000335565.6_4	chrX	144908927	144911368	TMEM257	+	protein_coding	chrX	144899346	144911374	SLITRK2	+	protein_coding	2441	same	12730_ID	chrX	144908928	144911368	2441	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
2990	ENST00000409690.5_6	ENST00000426755.5_5	chr3	196433147	196439121	CEP19	-	protein_coding	chr3	196366645	196457964	PIGX	+	protein_coding	5974	opposite	6621_ID	chr3	196433148	196439121	5974	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3005	ENST00000410099.1_3	ENST00000407936.5_1	chr22	38428171	38430235	AL031587.1	-	lncRNA	chr22	38349703	38437113	POLR2F	+	protein_coding	2064	opposite	4522_ID	chr22	38428172	38430235	2064	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
3038	ENST00000410264.2	ENST00000515026.1_2	chr4	101051101	101051192	AC121157.1	-	miRNA	chr4	100929227	101116256	H2AZ1-DT	+	lncRNA	91	opposite	3966_ID	chr4	101051102	101051192	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
3062	ENST00000410389.1	ENST00000371950.3_1	chrX	113886018	113886098	MIR1912	+	miRNA	chrX	113818554	114144624	HTR2C	+	protein_coding	80	same	8143_ID	chrX	113886019	113886098	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3073	ENST00000410423.1	ENST00000380970.2_3	chr7	53843828	53844017	RNU2-29P	+	snRNA	chr7	53723201	53879624	LINC01446	-	lncRNA	189	opposite	10627_ID	chr7	53843829	53844017	189	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3111	ENST00000410554.1	ENST00000458480.2_1	chr13	81839881	81839972	RNU6-77P	+	snRNA	chr13	81824572	81876542	AL353633.1	+	lncRNA	91	same	11496_ID	chr13	81839882	81839972	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
3114	ENST00000410564.1	ENST00000648653.1_2	chr2	207086038	207086358	RN7SKP200	+	misc_RNA	chr2	207068266	207130050	GPR1-AS	+	lncRNA	320	same	9820_ID	chr2	207086039	207086358	320	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
3144	ENST00000410708.1	ENST00000621525.4_5	chr14	70827608	70827805	RNU2-51P	+	snRNA	chr14	70792780	70883791	SYNJ2BP-COX16	-	protein_coding	197	opposite	10642_ID	chr14	70827609	70827805	197	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
3145	ENST00000410712.1	ENST00000660196.1_1	chr4	76750606	76750742	RNU2-16P	-	snRNA	chr4	76744118	76759542	AC110615.1	+	lncRNA	136	opposite	10621_ID	chr4	76750607	76750742	136	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3158	ENST00000410783.1	ENST00000371950.3_1	chrX	113997743	113997823	MIR1911	+	miRNA	chrX	113818554	114144624	HTR2C	+	protein_coding	80	same	8142_ID	chrX	113997744	113997823	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
3215	ENST00000411110.1	ENST00000315330.8_5	chr12	10236784	10237089	RN7SKP161	+	misc_RNA	chr12	10222152	10251584	CLEC1A	-	protein_coding	305	opposite	9796_ID	chr12	10236785	10237089	305	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3237	ENST00000411247.1	ENST00000506486.5_3	chr5	118343265	118343363	RNU6-373P	+	snRNA	chr5	118342041	118373363	AC008629.1	-	lncRNA	98	opposite	11190_ID	chr5	118343266	118343363	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
3242	ENST00000411282.1	ENST00000503191.5_1	chr8	15379392	15379475	AC091559.1	+	miRNA	chr8	15274723	15531345	TUSC3	+	processed_transcript	83	same	3002_ID	chr8	15379393	15379475	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3255	ENST00000411362.1	ENST00000637125.1_1	chr12	64969444	64969521	SNORD83	+	snoRNA	chr12	64900780	65088692	RASSF3	+	protein_coding	77	same	12450_ID	chr12	64969445	64969521	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3274	ENST00000411479.1_1	ENST00000609389.5_1	chr7	29026643	29028515	AC005162.1	+	lncRNA	chr7	29019582	29052983	AC005162.2	+	lncRNA	1872	same	247_ID	chr7	29026644	29028515	1872	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
3288	ENST00000411838.1_3	ENST00000614703.4_2	chr6	158250174	158251605	AL391863.2	-	lncRNA	chr6	158121418	158296181	SNX9	+	protein_coding	1431	opposite	5590_ID	chr6	158250175	158251605	1431	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
3295	ENST00000411940.1_1	ENST00000315930.11_8	chrX	137709237	137709504	AL031386.1	+	lncRNA	chrX	137696887	137793879	FGF13	-	protein_coding	267	opposite	4518_ID	chrX	137709238	137709504	267	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
3312	ENST00000412163.1_1	ENST00000662492.1_1	chrX	140713993	140714863	AC235097.1	+	lncRNA	chrX	140271507	140737305	SPANXA2-OT1	+	lncRNA	870	same	4265_ID	chrX	140713994	140714863	870	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
3350	ENST00000413148.1_1	ENST00000377205.6_2	chr1	10043198	10044626	AL603962.1	+	lncRNA	chr1	10003532	10045556	NMNAT1	+	protein_coding	1428	same	5835_ID	chr1	10043199	10044626	1428	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
3381	ENST00000414086.1_1	ENST00000664018.1_1	chr2	12739112	12745271	AC096559.1	+	lncRNA	chr2	12454442	12843039	MIR3681HG	+	lncRNA	6159	same	3274_ID	chr2	12739113	12745271	6159	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
3394	ENST00000414377.1_1	ENST00000235307.7_2	chr1	184377470	184381494	AL078645.1	+	lncRNA	chr1	184356162	184598153	C1orf21	+	protein_coding	4024	same	4671_ID	chr1	184377471	184381494	4024	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
3413	ENST00000414796.2_3	ENST00000453451.5_1	chr2	35223339	35225227	AC019064.1	-	lncRNA	chr2	35024916	35388178	AC012593.1	+	lncRNA	1888	opposite	1681_ID	chr2	35223340	35225227	1888	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3419	ENST00000414920.2_1	ENST00000450716.5_5	chr3	191956418	192000886	FGF12-AS1	+	lncRNA	chr3	191861766	192485553	FGF12	-	protein_coding	45061	opposite	7016_ID	chr3	191956419	192000886	44468	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
3440	ENST00000415285.1_1	ENST00000376131.8_4	chr13	102369913	102375456	AL160153.1	+	lncRNA	chr13	102363153	103054124	FGF14	-	protein_coding	5543	opposite	5132_ID	chr13	102369914	102375456	5543	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	5
3445	ENST00000415340.1	ENST00000418400.1	chr10	51253786	51262426	RP11-592B15.9	-	lincRNA	chr10	51253145	51291409	RP11-592B15.3	-	processed_transcript	8640	same	11920_ID	chr10	51253787	51262426	8640	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
3469	ENST00000416032.7_5	ENST00000435237.1_1	chr2	21860939	21872393	AC009411.1	-	lncRNA	chr2	21444046	22193831	AC018742.1	+	lncRNA	11505	opposite	957_ID	chr2	21860940	21872393	11454	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
3479	ENST00000416350.1_1	ENST00000441356.1_3	chr2	151422647	151424594	AC104777.2	+	lncRNA	chr2	151409045	151428735	LINC01920	-	lncRNA	1947	opposite	3568_ID	chr2	151422648	151424594	1947	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
3480	ENST00000416401.1_1	ENST00000618415.4_3	chr1	163229639	163230449	AL592435.1	+	lncRNA	chr1	163112088	163291581	RGS5	-	protein_coding	810	opposite	5816_ID	chr1	163229640	163230449	810	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3535	ENST00000418049.1_3	ENST00000168216.11_3	chrX	53459669	53459979	AC233728.1	-	lncRNA	chrX	53458208	53461317	HSD17B10	-	protein_coding	310	same	4257_ID	chrX	53459670	53459979	310	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3536	ENST00000418078.3_3	ENST00000668734.1_3	chr1	73230713	73256965	LINC02796	+	lncRNA	chr1	73102229	73364659	AL583808.1	-	lncRNA	26252	opposite	7800_ID	chr1	73230714	73256965	26252	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
3550	ENST00000418451.1_1	ENST00000421575.6_4	chr2	53091372	53093769	AC010967.2	+	lncRNA	chr2	52949808	53188590	AC010967.1	-	lncRNA	2397	opposite	1163_ID	chr2	53091373	53093769	2397	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
3559	ENST00000418618.1	ENST00000639839.1_2	chr1	31971840	31974167	RP11-439L8.3	+	lincRNA	chr1	31971826	32048848	LINC01226	+	lncRNA	2327	same	11913_ID	chr1	31971841	31974167	2327	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
3563	ENST00000418665.1_3	ENST00000366889.6_1	chr6	163464011	163475193	PACRG-AS2	-	lncRNA	chr6	163148163	163736524	PACRG	+	protein_coding	11605	opposite	9494_ID	chr6	163464012	163475193	11182	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
3570	ENST00000418943.1_2	ENST00000649617.1_1	chr13	64322131	64325213	AL445989.1	+	processed_transcript	chr13	64312243	64325216	AL445989.2	+	lncRNA	4340	same	5640_ID	chr13	64322132	64325213	3082	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
3579	ENST00000419244.2_3	ENST00000356388.9_6	chr2	65600833	65607819	AC012370.1	-	lncRNA	chr2	65537984	65659733	SPRED2	-	protein_coding	6986	same	1369_ID	chr2	65600834	65607819	6986	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
3580	ENST00000419257.1_1	ENST00000662263.1_3	chr17	70068473	70089622	LINC02097	+	lncRNA	chr17	70063239	70116946	SOX9-AS1	-	lncRNA	30703	opposite	7726_ID	chr17	70068474	70089622	21149	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
3610	ENST00000420038.1_1	ENST00000598753.1_3	chr19	12561748	12571519	AC008758.2	+	lncRNA	chr19	12543916	12595630	AC008758.6	-	nonsense_mediated_decay	9771	opposite	801_ID	chr19	12561749	12571519	9771	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	5
3611	ENST00000420044.1_3	ENST00000262487.5_2	chr20	13224710	13226016	AL050320.1	-	lncRNA	chr20	13201920	13281298	ISM1	+	protein_coding	1306	opposite	4651_ID	chr20	13224711	13226016	1306	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
3640	ENST00000420828.1_1	ENST00000417751.5_3	chr2	13863172	13898277	AC016730.1	+	lncRNA	chr2	13850655	14541087	LINC00276	-	lncRNA	35105	opposite	1558_ID	chr2	13863173	13898277	35105	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
3700	ENST00000422216.1_1	ENST00000371884.6_3	chr1	47691468	47696422	AL135960.1	+	lncRNA	chr1	47681961	47697387	TAL1	-	protein_coding	4954	opposite	4882_ID	chr1	47691469	47696422	4954	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
3748	ENST00000423346.1_3	ENST00000216029.7_1	chr22	39062512	39064755	AL021707.4	-	lncRNA	chr22	39052659	39069859	CBY1	+	protein_coding	2243	opposite	4452_ID	chr22	39062513	39064755	2243	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
3752	ENST00000423466.2_1	ENST00000656037.1_1	chr3	177401414	177409038	AC026355.2	+	lncRNA	chr3	177159714	177485167	LINC00578	+	lncRNA	7624	same	2134_ID	chr3	177401415	177409038	7624	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3754	ENST00000423500.1_3	ENST00000357847.9_2	chr6	143415170	143420782	AL023581.1	-	lncRNA	chr6	143382025	143662195	AIG1	+	protein_coding	5612	opposite	4490_ID	chr6	143415171	143420782	5612	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
3755	ENST00000423593.1_1	ENST00000366209.6_5	chr2	34292292	34294617	LINC01318	+	lncRNA	chr2	33931952	34522820	LINC01320	+	lncRNA	2325	same	7631_ID	chr2	34292293	34294617	2325	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
3767	ENST00000423979.1_3	ENST00000361669.6_1	chr7	86404396	86405338	AC005009.1	-	lncRNA	chr7	86273229	86494200	GRM3	+	protein_coding	942	opposite	212_ID	chr7	86404397	86405338	942	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3768	ENST00000423984.2_1	ENST00000235521.5_3	chr1	119590027	119607408	WARS2-IT1	+	lncRNA	chr1	119573838	119683276	WARS2	-	protein_coding	17381	opposite	12902_ID	chr1	119590028	119607408	17381	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3770	ENST00000424075.2_1	ENST00000536932.5_5	chr12	133464427	133465169	AC127070.1	+	lncRNA	chr12	133446309	133532890	CHFR	-	protein_coding	742	opposite	4032_ID	chr12	133464428	133465169	742	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3820	ENST00000425275.1_1	ENST00000441879.5_5	chr3	195977419	195978525	AC069257.1	+	lncRNA	chr3	195941092	196014561	PCYT1A	-	protein_coding	1113	opposite	2478_ID	chr3	195977420	195978525	1106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
3826	ENST00000425419.1_1	ENST00000361686.8_3	chr2	107450919	107457663	AC016994.1	+	lncRNA	chr2	107418055	107503563	ST6GAL2	-	protein_coding	6744	opposite	1579_ID	chr2	107450920	107457663	6744	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
3830	ENST00000425541.2_1	ENST00000669460.1_3	chr10	45432955	45451173	AL353801.1	+	lncRNA	chr10	45289031	45455157	TMEM72-AS1	-	lncRNA	18218	opposite	5265_ID	chr10	45432956	45451173	18218	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
3852	ENST00000426615.3_2	ENST00000452365.2_4	chr2	177042444	177043736	HAGLROS	+	lncRNA	chr2	177037729	177053259	HAGLR	-	lncRNA	1292	opposite	7213_ID	chr2	177042445	177043736	1292	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
3862	ENST00000426991.2_4	ENST00000267339.6_4	chr13	111546985	111551519	ANKRD10-IT1	-	lncRNA	chr13	111530886	111567416	ANKRD10	-	protein_coding	4534	same	5948_ID	chr13	111546986	111551519	4534	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
3890	ENST00000428273.1_1	ENST00000651593.1_2	chr10	131567107	131567699	AL157832.1	+	lncRNA	chr10	131265504	131569247	MGMT	+	protein_coding	592	same	5078_ID	chr10	131567108	131567699	592	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
3908	ENST00000428689.5_1	ENST00000284881.9_7	chr21	19165804	19183162	AL109761.1	+	lncRNA	chr21	19161290	19191673	C21orf91	-	protein_coding	17358	opposite	4703_ID	chr21	19165805	19183162	17358	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
3941	ENST00000429482.1_3	ENST00000373615.9_3	chr9	126793902	126794803	AC006450.2	-	lncRNA	chr9	126774046	126795580	LHX2	+	protein_coding	901	opposite	466_ID	chr9	126793903	126794803	901	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	5
3957	ENST00000430034.1_3	ENST00000643349.1_3	chr11	2150350	2151194	AC132217.1	-	lncRNA	chr11	2150341	2170833	AC132217.2	-	protein_coding	844	same	4100_ID	chr11	2150351	2151194	844	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
3967	ENST00000430222.1_1	ENST00000525403.5_1	chr11	3875841	3876629	AC090587.1	+	lncRNA	chr11	3875756	4080567	STIM1	+	protein_coding	788	same	2914_ID	chr11	3875842	3876629	788	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
3978	ENST00000430457.1_1	ENST00000409003.5_6	chr8	119303446	119412844	AC023590.1	+	lncRNA	chr8	119201693	119634153	SAMD12	-	protein_coding	118467	opposite	1961_ID	chr8	119303447	119412844	109398	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
3981	ENST00000430551.2_3	ENST00000665210.1_1	chr2	105104915	105126967	LINC01103	-	lncRNA	chr2	105050835	105149205	LINC01102	+	lncRNA	22052	opposite	7603_ID	chr2	105104916	105126967	22052	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
4012	ENST00000431407.1_3	ENST00000262487.5_2	chr20	13218447	13220321	ISM1-AS1	-	lncRNA	chr20	13201920	13281298	ISM1	+	protein_coding	1874	opposite	7371_ID	chr20	13218448	13220321	1874	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4021	ENST00000431789.1_3	ENST00000648716.1_4	chr5	55832409	55833653	AC022431.1	-	lncRNA	chr5	55807393	55902059	C5orf67	-	lncRNA	1244	same	1861_ID	chr5	55832410	55833653	1244	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4022	ENST00000431803.2_1	ENST00000648594.1_3	chr1	22385689	22390692	CDC42-IT1	+	lncRNA	chr1	22352003	22427853	CDC42	+	protein_coding	5003	same	6597_ID	chr1	22385690	22390692	5003	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4025	ENST00000431897.1_3	ENST00000640575.2_2	chr2	103583865	103600887	LINC01935	-	lncRNA	chr2	103378421	103636358	TMEM182	+	protein_coding	17022	opposite	7705_ID	chr2	103583866	103600887	17022	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
4048	ENST00000432431.1_3	ENST00000653533.1_1	chr2	145445979	145447752	AC023128.1	-	lncRNA	chr2	145425340	145940216	TEX41	+	lncRNA	1773	opposite	1933_ID	chr2	145445980	145447752	1773	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4108	ENST00000434265.2_3	ENST00000309502.7_3	chr1	203113821	203121707	AC105940.1	-	lncRNA	chr1	203059781	203136532	ADORA1	+	protein_coding	7886	opposite	3625_ID	chr1	203113822	203121707	7886	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
4150	ENST00000435291.1_1	ENST00000640575.2_2	chr2	103603780	103605023	AC108051.1	+	lncRNA	chr2	103378421	103636358	TMEM182	+	protein_coding	1243	same	3715_ID	chr2	103603781	103605023	1243	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
4207	ENST00000436877.2_3	ENST00000669460.1_3	chr10	45395061	45415668	AL353801.2	-	lncRNA	chr10	45289031	45455157	TMEM72-AS1	-	lncRNA	20607	same	5266_ID	chr10	45395062	45415668	20607	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4231	ENST00000437416.3_5	ENST00000498382.5_1	chr1	224795831	224803922	CNIH3-AS2	-	lncRNA	chr1	224716892	224927323	CNIH3	+	processed_transcript	8091	opposite	6676_ID	chr1	224795832	224803922	8091	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4273	ENST00000438828.4_7	ENST00000477723.1_3	chr2	203776997	203852986	CARF	+	protein_coding	chr2	203764279	203879521	WDR12	-	processed_transcript	76050	opposite	6552_ID	chr2	203776998	203852986	75989	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
4301	ENST00000439431.3_4	ENST00000429289.5_1	chr7	143206348	143216562	OR10AC1	-	polymorphic_pseudogene	chr7	143104905	143220542	EPHA1-AS1	+	lncRNA	10214	opposite	9345_ID	chr7	143206349	143216562	10214	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
4305	ENST00000439529.1_3	ENST00000254977.7_3	chr20	11890051	11899325	AL035448.1	-	lncRNA	chr20	11871370	11907257	BTBD3	+	protein_coding	9274	opposite	4608_ID	chr20	11890052	11899325	9274	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
4342	ENST00000440558.2	ENST00000448962.5_1	chr19	54720736	54746649	LILRA6	-	protein_coding	chr19	54704725	54752862	RPS9	+	nonsense_mediated_decay	25913	opposite	7523_ID	chr19	54720737	54746649	25913	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	5
4367	ENST00000441238.1_3	ENST00000295400.11_5	chr2	70694516	70695627	TGFA-IT1	-	lncRNA	chr2	70674415	70780958	TGFA	-	protein_coding	1111	same	12668_ID	chr2	70694517	70695627	1111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4392	ENST00000442062.1_3	ENST00000665053.1_3	chr2	229548252	229549296	AC012070.1	-	lncRNA	chr2	229339939	229706165	LINC01807	-	lncRNA	1044	same	1327_ID	chr2	229548253	229549296	1044	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4419	ENST00000442716.1_1	ENST00000454681.2_3	chr13	34185103	34185659	AL161719.1	+	lncRNA	chr13	33929342	34250905	AL139383.1	-	lncRNA	556	opposite	5163_ID	chr13	34185104	34185659	556	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4436	ENST00000443165.1_1	ENST00000450716.5_5	chr3	192232810	192234362	FGF12-AS2	+	lncRNA	chr3	191861766	192485553	FGF12	-	protein_coding	1552	opposite	7017_ID	chr3	192232811	192234362	1552	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4444	ENST00000443576.3_3	ENST00000567873.1_3	chr13	33907815	33909414	LINC02344	-	lncRNA	chr13	33701566	33924767	STARD13	-	protein_coding	1599	same	7763_ID	chr13	33907816	33909414	1599	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4447	ENST00000443696.1_3	ENST00000353383.6_5	chr17	17662467	17674135	RAI1-AS1	-	lncRNA	chr17	17584771	17714767	RAI1	+	protein_coding	11668	opposite	9697_ID	chr17	17662468	17674135	11668	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4476	ENST00000444853.2_1	ENST00000637125.1_1	chr12	65022123	65023756	AC078962.1	+	lncRNA	chr12	64900780	65088692	RASSF3	+	protein_coding	1633	same	2611_ID	chr12	65022124	65023756	1633	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4497	ENST00000445385.2_2	ENST00000585776.5_3	chr9	84558500	84564953	SPATA31D3	+	protein_coding	chr9	84545140	84592004	AL158154.3	-	lncRNA	6453	opposite	12512_ID	chr9	84558501	84564953	6453	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
4499	ENST00000445442.2_3	ENST00000366796.7_4	chr6	168698748	168702794	AL606970.1	-	lncRNA	chr6	168693509	168720434	DACT2	-	protein_coding	4046	same	5845_ID	chr6	168698749	168702794	4046	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
4506	ENST00000445617.2_1	ENST00000575858.5_3	chr17	9355513	9373331	AC087501.1	+	lncRNA	chr17	9153788	9479152	STX8	-	nonsense_mediated_decay	17818	opposite	2825_ID	chr17	9355514	9373331	17818	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
4520	ENST00000446058.1_3	ENST00000361686.8_3	chr2	107439378	107441487	ST6GAL2-IT1	-	lncRNA	chr2	107418055	107503563	ST6GAL2	-	protein_coding	2109	same	12558_ID	chr2	107439379	107441487	2109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
4521	ENST00000446107.1_1	ENST00000660538.1_1	chr10	44407891	44409684	AL139237.1	+	lncRNA	chr10	44404743	44476550	LINC00841	+	lncRNA	1793	same	5018_ID	chr10	44407892	44409684	1793	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4562	ENST00000447056.1_3	ENST00000656143.1_1	chr1	193653375	193657559	AL357793.2	-	lncRNA	chr1	193442353	194167838	AL136456.1	+	lncRNA	4184	opposite	5434_ID	chr1	193653376	193657559	4184	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4572	ENST00000447343.2_1	ENST00000245663.9_3	chr20	62376041	62377304	AL121845.1	+	lncRNA	chr20	62375022	62462617	ZBTB46	-	protein_coding	1270	opposite	4762_ID	chr20	62376042	62377304	1263	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
4578	ENST00000447529.1_1	ENST00000393083.2_3	chr7	137003338	137011700	AC078842.2	+	lncRNA	chr7	136912110	137028520	PTN	-	protein_coding	8362	opposite	2592_ID	chr7	137003339	137011700	8362	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4579	ENST00000447572.1_3	ENST00000372525.7_3	chr1	43241483	43242461	AC098484.1	-	lncRNA	chr1	43232919	43245162	C1orf50	+	protein_coding	978	opposite	3337_ID	chr1	43241484	43242461	978	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	5
4590	ENST00000447834.1_3	ENST00000451200.6_2	chr3	42975743	42978277	KRBOX1-AS1	-	lncRNA	chr3	42850937	43073827	AC092042.3	+	processed_transcript	2534	opposite	7466_ID	chr3	42975744	42978277	2534	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4592	ENST00000447880.1_3	ENST00000264607.9_2	chr2	239335717	239336370	AC016999.1	-	lncRNA	chr2	239335567	239360891	ASB1	+	protein_coding	653	opposite	1581_ID	chr2	239335718	239336370	653	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
4606	ENST00000448412.2_1	ENST00000656143.1_1	chr1	193648023	193696165	AL357793.1	+	lncRNA	chr1	193442353	194167838	AL136456.1	+	lncRNA	48142	same	5432_ID	chr1	193648024	193696165	48142	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4612	ENST00000448570.1_1	ENST00000436786.1_1	chr9	22767173	22768315	AC017067.1	+	lncRNA	chr9	22646198	22824212	LINC01239	+	lncRNA	1142	same	1604_ID	chr9	22767174	22768315	1142	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
4618	ENST00000448791.1_1	ENST00000374135.9_4	chr1	27202623	27204736	AL034380.1	+	lncRNA	chr1	27202622	27216774	GPN2	-	protein_coding	2113	opposite	4585_ID	chr1	27202624	27204736	2113	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
4621	ENST00000448803.6_1	ENST00000618330.3_5	chr15	85144235	85166947	ZSCAN2	+	protein_coding	chr15	85141039	85177219	AC048382.5	-	lncRNA	26811	opposite	13086_ID	chr15	85144236	85166947	22712	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
4627	ENST00000448859.2_4	ENST00000605292.5_1	chr20	10855980	10889927	AL050403.1	-	lncRNA	chr20	10653575	10972290	AL050403.2	+	lncRNA	33947	opposite	4658_ID	chr20	10855981	10889927	33947	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
4643	ENST00000449391.2_3	ENST00000446825.1_4	chr2	20790534	20792308	HS1BP3-IT1	-	lncRNA	chr2	20760207	20850842	HS1BP3	-	protein_coding	1774	same	7289_ID	chr2	20790535	20792308	1774	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
4665	ENST00000450108.1	ENST00000373795.7_5	chr1	29479000	29479503	RP11-242O24.5	+	antisense	chr1	29474254	29508412	SRSF4	-	protein_coding	503	opposite	11886_ID	chr1	29479001	29479503	503	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
4687	ENST00000450936.1_3	ENST00000399784.6_2	chr21	33678774	33681048	MRAP-AS1	-	lncRNA	chr21	33664123	33684601	MRAP	+	protein_coding	2274	opposite	9157_ID	chr21	33678775	33681048	2274	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
4694	ENST00000451085.5_1	ENST00000405709.7_3	chr7	110731061	110765507	LRRN3	+	protein_coding	chr7	110302699	111202548	IMMP2L	-	protein_coding	34449	opposite	7871_ID	chr7	110731062	110765507	34446	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
4719	ENST00000451610.6_1	ENST00000355624.8_4	chr10	119776997	119805321	AC022395.1	+	lncRNA	chr10	119764426	119806452	RAB11FIP2	-	protein_coding	28324	opposite	1853_ID	chr10	119776998	119805321	28324	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
4737	ENST00000451832.1_3	ENST00000405709.7_3	chr7	110364214	110365881	AC073326.1	-	lncRNA	chr7	110302699	111202548	IMMP2L	-	protein_coding	1667	same	2521_ID	chr7	110364215	110365881	1667	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
4740	ENST00000451946.1_3	ENST00000654191.1_1	chr10	65796104	65797040	AC012558.1	-	lncRNA	chr10	65632329	66452714	AC013287.1	+	lncRNA	936	opposite	1409_ID	chr10	65796105	65797040	936	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4741	ENST00000451979.1_1	ENST00000667050.1_3	chrX	62569524	62572057	SPIN4-AS1	+	lncRNA	chrX	62442871	62780822	LINC01278	-	lncRNA	2533	opposite	12529_ID	chrX	62569525	62572057	2533	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
4748	ENST00000452207.1_1	ENST00000454681.2_3	chr13	34231572	34234065	AL139081.1	+	lncRNA	chr13	33929342	34250905	AL139383.1	-	lncRNA	2493	opposite	5003_ID	chr13	34231573	34234065	2493	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4751	ENST00000452313.1	ENST00000675058.1_1	chr16	28467692	28481868	NPIPB7	-	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	14176	opposite	9291_ID	chr16	28467693	28481868	14176	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4762	ENST00000452494.2_2	ENST00000548010.1_3	chr10	101286704	101288224	AL513542.1	+	lncRNA	chr10	101286106	101290934	LINC01475	-	lncRNA	1520	opposite	5716_ID	chr10	101286705	101288224	1520	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
4773	ENST00000452848.1_1	ENST00000450716.5_5	chr3	192234619	192239187	FGF12-AS3	+	lncRNA	chr3	191861766	192485553	FGF12	-	protein_coding	4568	opposite	7018_ID	chr3	192234620	192239187	4568	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4819	ENST00000454136.7_4	ENST00000645134.1_1	chr6	32361739	32374905	BTNL2	-	protein_coding	chr6	32223104	32375540	TSBP1-AS1	+	lncRNA	13166	opposite	6440_ID	chr6	32361740	32374905	13166	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
4823	ENST00000454228.1_3	ENST00000341189.8_1	chrX	100877972	100879154	ARMCX3-AS1	-	lncRNA	chrX	100877786	100882833	ARMCX3	+	protein_coding	1182	opposite	6343_ID	chrX	100877973	100879154	1182	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
4847	ENST00000455074.1_1	ENST00000450050.6_3	chr9	132402754	132403561	AL590369.1	+	lncRNA	chr9	132396882	132404448	ASB6	-	protein_coding	807	opposite	5761_ID	chr9	132402755	132403561	807	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
4852	ENST00000455238.1_3	ENST00000635446.1_1	chr1	48544458	48547868	AL356289.1	-	lncRNA	chr1	48516330	48557408	LINC02794	+	lncRNA	3410	opposite	5381_ID	chr1	48544459	48547868	3410	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
4856	ENST00000455307.5_1	ENST00000614557.1_1	chr3	178136988	178175093	LINC01014	+	lncRNA	chr3	178136910	178561088	AC117457.1	+	protein_coding	38109	same	7588_ID	chr3	178136989	178175093	38105	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
4859	ENST00000455390.1_1	ENST00000512860.5_5	chr6	167317185	167318323	RPS6KA2-AS1	+	lncRNA	chr6	166918002	167319939	RPS6KA2	-	protein_coding	1138	opposite	11961_ID	chr6	167317186	167318323	1138	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4866	ENST00000455541.1_1	ENST00000628659.2_4	chr2	70316852	70323232	AC016700.1	+	lncRNA	chr2	70190385	70330041	PCBP1-AS1	-	lncRNA	6380	opposite	1551_ID	chr2	70316853	70323232	6380	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4886	ENST00000456087.1_3	ENST00000567873.1_3	chr13	33732723	33738546	STARD13-IT1	-	lncRNA	chr13	33701566	33924767	STARD13	-	protein_coding	5823	same	12564_ID	chr13	33732724	33738546	5823	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
4888	ENST00000456103.1_3	ENST00000653211.1_1	chr6	28616062	28616843	LINC00533	-	lncRNA	chr6	28603345	28617315	AL121932.2	+	lncRNA	781	opposite	7561_ID	chr6	28616063	28616843	781	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	5	5
4896	ENST00000456316.1_1	ENST00000399916.5_4	chr1	25287835	25289588	RUNX3-AS1	+	lncRNA	chr1	25226001	25291501	RUNX3	-	protein_coding	1753	opposite	11981_ID	chr1	25287836	25289588	1753	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4902	ENST00000456450.1_3	ENST00000382062.6_1	chr2	3650986	3651832	AC010907.2	-	lncRNA	chr2	3642421	3692234	COLEC11	+	protein_coding	846	opposite	1159_ID	chr2	3650987	3651832	846	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4906	ENST00000456621.1_1	ENST00000608254.1	chrX	22446248	22512830	AC092832.2	+	lncRNA	chrX	22277913	23311263	RP11-40F8.2	-	lincRNA	66582	opposite	3157_ID	chrX	22446249	22512830	66582	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
4915	ENST00000456755.1_3	ENST00000656037.1_1	chr3	177339169	177346075	AC026355.3	-	lncRNA	chr3	177159714	177485167	LINC00578	+	lncRNA	6906	opposite	2135_ID	chr3	177339170	177346075	6906	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4934	ENST00000457120.1_1	ENST00000369780.8_1	chr10	105308831	105310721	AL121929.1	+	lncRNA	chr10	105253735	105352309	NEURL1	+	protein_coding	1890	same	4776_ID	chr10	105308832	105310721	1890	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
4938	ENST00000457224.1_3	ENST00000664459.1_1	chr20	24123225	24125022	AL110503.1	-	lncRNA	chr20	24043960	24206649	LINC01721	+	lncRNA	1797	opposite	4720_ID	chr20	24123226	24125022	1797	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
4945	ENST00000457385.1_1	ENST00000671178.1_3	chr2	38658435	38660715	LINC01883	+	lncRNA	chr2	38633668	38742782	LINC02613	-	lncRNA	2280	opposite	7693_ID	chr2	38658436	38660715	2280	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
4967	ENST00000458170.1_6	ENST00000472595.5_1	chrX	72027258	72028044	FAM236D	-	protein_coding	chrX	71996832	72068636	DMRTC1B	+	nonsense_mediated_decay	786	opposite	6977_ID	chrX	72027259	72028044	786	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
5012	ENST00000458848.1	ENST00000551229.3_4	chr12	45948372	45948442	RNU6-671P	-	snRNA	chr12	45869302	46004373	AC079950.1	-	lncRNA	70	same	11422_ID	chr12	45948373	45948442	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
5031	ENST00000458954.1	ENST00000641618.1_4	chr8	12435513	12435661	AC068587.2	+	miRNA	chr8	12325201	12465169	AC068587.4	-	lncRNA	148	opposite	2423_ID	chr8	12435514	12435661	148	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
5037	ENST00000459025.1	ENST00000443671.2	chr1	147665992	147666115	RNA5SP58	+	rRNA	chr1	147635065	147672830	XXyac-YX155B6.6	-	lincRNA	123	opposite	10524_ID	chr1	147665993	147666115	123	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
5048	ENST00000459101.1	ENST00000526761.5_6	chr11	77277978	77278039	RNU7-59P	-	snRNA	chr11	77225980	77330740	CLNS1A	-	nonsense_mediated_decay	61	same	11794_ID	chr11	77277979	77278039	61	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
5085	ENST00000459303.1	ENST00000541212.6_3	chr12	122346008	122346069	RNU7-170P	+	snRNA	chr12	122326695	122356203	PSMD9	+	protein_coding	61	same	11741_ID	chr12	122346009	122346069	61	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
5119	ENST00000459475.1	ENST00000353689.8_3	chr14	20794608	20794685	SNORD126	-	snoRNA	chr14	20779526	20801471	CCNB1IP1	-	protein_coding	77	same	12367_ID	chr14	20794609	20794685	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
5174	ENST00000462069.6_2	ENST00000665590.1_3	chr3	62304696	62321888	C3orf14	+	protein_coding	chr3	62206922	62355031	PTPRG-AS1	-	lncRNA	17199	opposite	6511_ID	chr3	62304697	62321888	17192	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
5177	ENST00000462168.1_1	ENST00000383075.8_6	chr3	147104753	147105240	ZIC4-AS1	+	lncRNA	chr3	147103832	147124330	ZIC4	-	protein_coding	487	opposite	13014_ID	chr3	147104754	147105240	487	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
5180	ENST00000462240.2	ENST00000429705.6_1	chr3	43356442	43356745	RN7SL517P	+	misc_RNA	chr3	43328029	43392635	SNRK	+	protein_coding	303	same	10244_ID	chr3	43356443	43356745	303	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
5191	ENST00000462960.2	ENST00000429371.7_3	chr8	146010682	146010971	RN7SL395P	+	misc_RNA	chr8	145997608	146012702	ZNF34	-	protein_coding	289	opposite	10154_ID	chr8	146010683	146010971	289	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
5218	ENST00000464862.2	ENST00000658411.1_1	chr22	32377131	32377414	RN7SL305P	-	misc_RNA	chr22	32366814	32433982	LINC02558	+	lncRNA	283	opposite	10092_ID	chr22	32377132	32377414	283	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
5227	ENST00000465477.5_2	ENST00000486568.5_1	chr3	158450115	158501859	AC080013.1	+	lncRNA	chr3	158449986	158525210	MFSD1	+	protein_coding	51808	same	2694_ID	chr3	158450116	158501859	51744	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
5245	ENST00000466970.2	ENST00000559321.2_2	chr15	97896726	97897015	RN7SL677P	+	misc_RNA	chr15	97759041	97975316	LINC02253	+	lncRNA	289	same	10359_ID	chr15	97896727	97897015	289	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
5252	ENST00000467399.2	ENST00000319104.7_3	chr8	42736378	42736675	RN7SL806P	+	misc_RNA	chr8	42704779	42751728	RNF170	-	protein_coding	297	opposite	10446_ID	chr8	42736379	42736675	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
5270	ENST00000468558.2	ENST00000606025.5_5	chr2	71192700	71192995	RN7SL160P	+	misc_RNA	chr2	71166447	71222466	AC007040.2	-	protein_coding	295	opposite	9983_ID	chr2	71192701	71192995	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	5	5
5272	ENST00000468841.2	ENST00000627670.3_3	chr2	118773957	118774243	RN7SL111P	+	misc_RNA	chr2	118754299	118812292	AC009303.2	+	lncRNA	286	same	9947_ID	chr2	118773958	118774243	286	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
5273	ENST00000468851.2	ENST00000668623.1_3	chr13	23453263	23453338	AL162853.1	-	miRNA	chr13	23433188	23489914	LINC00621	-	lncRNA	75	same	5224_ID	chr13	23453264	23453338	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
5280	ENST00000469484.1_1	ENST00000474267.5_3	chr3	55521726	55522336	WNT5A-AS1	+	lncRNA	chr3	55499742	55523973	WNT5A	-	protein_coding	610	opposite	12914_ID	chr3	55521727	55522336	610	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
5290	ENST00000469864.2	ENST00000484076.1_1	chr3	119829344	119829633	RN7SL762P	-	misc_RNA	chr3	119813741	119855630	AC092910.3	+	lncRNA	289	opposite	10415_ID	chr3	119829345	119829633	289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
5304	ENST00000470671.1_3	ENST00000439980.7_2	chrX	71475528	71493221	RPS4X	-	processed_transcript	chrX	71401614	71522776	PIN4	+	nonsense_mediated_decay	21570	opposite	11959_ID	chrX	71475529	71493221	17693	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
5320	ENST00000471607.2	ENST00000455576.1_1	chr3	25061653	25061954	RN7SL216P	-	misc_RNA	chr3	24729409	25215796	AC092422.1	+	lncRNA	301	opposite	10026_ID	chr3	25061654	25061954	301	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
5323	ENST00000471754.2	ENST00000534788.1_1	chr11	118801919	118802184	RN7SL688P	+	misc_RNA	chr11	118795872	118829264	UPK2	+	processed_transcript	265	same	10366_ID	chr11	118801920	118802184	265	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
5386	ENST00000475692.2	ENST00000645056.1_3	chr1	88943513	88943797	RN7SL583P	-	misc_RNA	chr1	88151912	89006342	PKN2-AS1	-	lncRNA	284	same	10285_ID	chr1	88943514	88943797	284	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
5450	ENST00000480095.2	ENST00000676214.1_1	chr3	128503989	128504288	RN7SL698P	+	misc_RNA	chr3	128412511	128533640	RAB7A	+	protein_coding	299	same	10371_ID	chr3	128503990	128504288	299	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
5473	ENST00000481882.7_6	ENST00000657773.1_3	chr1	47011312	47017319	KNCN	-	protein_coding	chr1	47004282	47035909	MKNK1-AS1	+	lncRNA	6007	opposite	7463_ID	chr1	47011313	47017319	6007	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
5477	ENST00000482328.2	ENST00000649584.1_1	chr7	140345643	140345924	RN7SL771P	+	misc_RNA	chr7	140340708	140369276	AC006452.1	+	lncRNA	281	same	10420_ID	chr7	140345644	140345924	281	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
5507	ENST00000484405.2	ENST00000377197.8_2	chr9	72499278	72499566	RN7SL570P	-	misc_RNA	chr9	72435732	72521143	C9orf135	+	protein_coding	288	opposite	10276_ID	chr9	72499279	72499566	288	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
5516	ENST00000485097.2	ENST00000555028.6_2	chr14	74641158	74641454	RN7SL530P	+	misc_RNA	chr14	74551498	74667938	LIN52	+	protein_coding	296	same	10253_ID	chr14	74641159	74641454	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
5535	ENST00000485643.2	ENST00000334025.3_3	chr5	63835330	63835621	RN7SL169P	+	misc_RNA	chr5	63801841	63908146	RGS7BP	+	protein_coding	291	same	9990_ID	chr5	63835331	63835621	291	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
5544	ENST00000486285.1_3	ENST00000300175.8_2	chr15	32948284	32961293	SCG5-AS1	-	lncRNA	chr15	32933876	32989299	SCG5	+	protein_coding	16982	opposite	12004_ID	chr15	32948285	32961293	13009	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
5549	ENST00000487309.2	ENST00000484076.1_1	chr3	119840755	119841051	RN7SL397P	+	misc_RNA	chr3	119813741	119855630	AC092910.3	+	lncRNA	296	same	10155_ID	chr3	119840756	119841051	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
5597	ENST00000490647.1_3	ENST00000661060.1_3	chr3	120552286	120555207	LINC02049	-	lncRNA	chr3	120530376	120626899	AC072026.2	-	lncRNA	2921	same	7719_ID	chr3	120552287	120555207	2921	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
5645	ENST00000493710.1_1	ENST00000462662.1_1	chr7	128095990	128109251	AC010655.2	+	lncRNA	chr7	128095893	128133913	AC010655.4	+	lncRNA	13261	same	1121_ID	chr7	128095991	128109251	13261	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
5654	ENST00000494455.5_3	ENST00000419593.5_1	chr20	44004116	44036529	TP53TG5	-	processed_transcript	chr20	43991839	44039250	SYS1-DBNDD2	+	nonsense_mediated_decay	35333	opposite	12765_ID	chr20	44004117	44036529	32413	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
5674	ENST00000496478.2	ENST00000287218.9_2	chr6	37800697	37800961	RN7SL285P	-	misc_RNA	chr6	37787502	38122400	ZFAND3	+	protein_coding	264	opposite	10078_ID	chr6	37800698	37800961	264	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
5683	ENST00000496930.5_1	ENST00000570618.5_3	chr17	44370098	44415158	LRRC37A	+	protein_coding	chr17	44352149	44439130	ARL17B	-	protein_coding	45062	opposite	7860_ID	chr17	44370099	44415158	45060	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	5
5694	ENST00000497864.5_2	ENST00000483233.5_3	chr3	52005441	52014490	ABHD14A	+	protein_coding	chr3	52002525	52017425	ABHD14B	-	protein_coding	9774	opposite	10_ID	chr3	52005442	52014490	9049	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
5708	ENST00000498656.2	ENST00000243347.5_2	chr2	152228516	152228798	RN7SL124P	+	misc_RNA	chr2	152214105	152236560	TNFAIP6	+	protein_coding	282	same	9958_ID	chr2	152228517	152228798	282	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
5711	ENST00000498736.2	ENST00000439980.7_2	chrX	71418561	71418898	RN7SL388P	+	misc_RNA	chrX	71401614	71522776	PIN4	+	nonsense_mediated_decay	337	same	10149_ID	chrX	71418562	71418898	337	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
5714	ENST00000498871.3_4	ENST00000308234.11_1	chr5	98105321	98108843	RGMB-AS1	-	lncRNA	chr5	98104998	98132198	RGMB	+	protein_coding	3852	opposite	9739_ID	chr5	98105322	98108843	3522	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
5720	ENST00000499110.1_3	ENST00000335325.9_2	chr16	75142498	75144610	AC099508.1	-	lncRNA	chr16	75032921	75144892	ZNRF1	+	protein_coding	2112	opposite	3369_ID	chr16	75142499	75144610	2112	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
5722	ENST00000499525.1_1	ENST00000530247.1_3	chr6	28555154	28559524	AL049543.1	+	lncRNA	chr6	28543793	28583989	ZBED9	-	processed_transcript	4370	opposite	4620_ID	chr6	28555155	28559524	4370	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
5739	ENST00000501068.2_1	ENST00000640345.1_3	chr16	81110923	81112466	AC092718.1	+	lncRNA	chr16	81055920	81129889	AC092718.8	-	protein_coding	1543	opposite	3125_ID	chr16	81110924	81112466	1543	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
5743	ENST00000501164.2_3	ENST00000523184.5_1	chr8	96079035	96085148	MIR3150BHG	-	lncRNA	chr8	96060693	96128683	NDUFAF6	+	processed_transcript	6375	opposite	8270_ID	chr8	96079036	96085148	6113	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
5781	ENST00000503188.1_1	ENST00000507435.1_3	chr5	4512374	4516889	AC106799.1	+	lncRNA	chr5	4452042	4866334	AC106799.2	-	lncRNA	4515	opposite	3651_ID	chr5	4512375	4516889	4515	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
5787	ENST00000503505.1_1	ENST00000502773.6_4	chr4	157762510	157763388	AC092608.1	+	lncRNA	chr4	157681605	157892951	PDGFC	-	protein_coding	878	opposite	3107_ID	chr4	157762511	157763388	878	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
5790	ENST00000503695.4_1	ENST00000536932.5_5	chr12	133488055	133491318	AC127070.2	+	lncRNA	chr12	133446309	133532890	CHFR	-	protein_coding	3263	opposite	4033_ID	chr12	133488056	133491318	3263	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
5793	ENST00000503757.1_1	ENST00000507435.1_3	chr5	4773593	4774978	LINC02114	+	lncRNA	chr5	4452042	4866334	AC106799.2	-	lncRNA	1385	opposite	7728_ID	chr5	4773594	4774978	1385	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
5818	ENST00000504539.1_3	ENST00000239906.10_2	chr5	137682715	137685330	AC104116.1	-	lncRNA	chr5	137673954	137685418	FAM53C	+	protein_coding	2615	opposite	3510_ID	chr5	137682716	137685330	2615	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
5855	ENST00000505663.1_3	ENST00000624272.3_1	chr5	134571923	134583869	C5orf66-AS2	-	lncRNA	chr5	134368969	134680375	C5orf66	+	lncRNA	11946	opposite	6515_ID	chr5	134571924	134583869	11946	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
5861	ENST00000505721.2_4	ENST00000321871.11_3	chr3	132964446	132976051	TMEM108-AS1	-	lncRNA	chr3	132757234	133116619	TMEM108	+	protein_coding	11605	opposite	12712_ID	chr3	132964447	132976051	11605	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
5868	ENST00000506009.2_3	ENST00000238738.9_2	chr2	46795394	46807377	RHOQ-AS1	-	lncRNA	chr2	46769628	46811827	RHOQ	+	protein_coding	11983	opposite	9748_ID	chr2	46795395	46807377	11983	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
5879	ENST00000506335.1_1	ENST00000513692.5_5	chr5	1884079	1884763	IRX4-AS1	+	lncRNA	chr5	1877526	1887350	IRX4	-	protein_coding	684	opposite	7368_ID	chr5	1884080	1884763	684	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
5907	ENST00000507031.2_1	ENST00000675058.1_1	chr16	28814063	28829149	AC145285.2	+	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	15086	same	4236_ID	chr16	28814064	28829149	15086	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
5908	ENST00000507035.2_3	ENST00000624272.3_1	chr5	134374520	134375737	C5orf66-AS1	-	lncRNA	chr5	134368969	134680375	C5orf66	+	lncRNA	1217	opposite	6514_ID	chr5	134374521	134375737	1217	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
5910	ENST00000507058.1_1	ENST00000624272.3_1	chr5	134456215	134475371	AC008406.2	+	lncRNA	chr5	134368969	134680375	C5orf66	+	lncRNA	19156	same	725_ID	chr5	134456216	134475371	19156	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
5982	ENST00000509530.1_3	ENST00000624272.3_1	chr5	134460069	134466939	AC008406.1	-	lncRNA	chr5	134368969	134680375	C5orf66	+	lncRNA	6870	opposite	724_ID	chr5	134460070	134466939	6870	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
6074	ENST00000512280.1_3	ENST00000635322.1_1	chr1	151735859	151741977	AL589765.4	-	lncRNA	chr1	151735374	151743806	OAZ3	+	protein_coding	6118	opposite	5738_ID	chr1	151735860	151741977	6118	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
6094	ENST00000512692.7_4	ENST00000394205.7_4	chr4	141204877	141294538	SCOC-AS1	-	lncRNA	chr4	141178439	141303710	SCOC	+	protein_coding	89680	opposite	12013_ID	chr4	141204878	141294538	89661	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
6107	ENST00000513197.1_1	ENST00000668535.1_3	chr5	68259072	68263672	AC093248.1	+	lncRNA	chr5	68088435	68303012	AC093523.1	-	lncRNA	4600	opposite	3189_ID	chr5	68259073	68263672	4600	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
6118	ENST00000513616.1_3	ENST00000512873.1_1	chr4	27264127	27268876	AC024132.3	-	lncRNA	chr4	27219100	27283847	LINC02261	+	lncRNA	4749	opposite	2002_ID	chr4	27264128	27268876	4749	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6127	ENST00000513925.1_1	ENST00000507435.1_3	chr5	4640843	4648367	AC010634.1	+	lncRNA	chr5	4452042	4866334	AC106799.2	-	lncRNA	7524	opposite	1119_ID	chr5	4640844	4648367	7524	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6136	ENST00000514201.1_3	ENST00000439211.7_4	chr5	79926131	79927409	AC008434.1	-	lncRNA	chr5	79922044	79950802	DHFR	-	protein_coding	1278	same	729_ID	chr5	79926132	79927409	1278	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
6149	ENST00000514427.1_4	ENST00000510657.1_3	chr4	101699738	101712392	LINC01217	-	lncRNA	chr4	101401128	101801283	EMCN	-	processed_transcript	12845	same	7621_ID	chr4	101699739	101712392	12654	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6167	ENST00000515150.1_3	ENST00000510657.1_3	chr4	101733411	101735437	LINC01218	-	lncRNA	chr4	101401128	101801283	EMCN	-	processed_transcript	2026	same	7622_ID	chr4	101733412	101735437	2026	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6170	ENST00000515302.1	ENST00000510419.1	chr4	75454448	75475972	RP11-727M10.2	-	antisense	chr4	75418300	75514664	AC142293.3	-	antisense	21524	same	11933_ID	chr4	75454449	75475972	21524	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
6185	ENST00000515604.5_5	ENST00000670253.1_3	chr4	77172873	77232273	FAM47E-STBD1	+	protein_coding	chr4	77161892	77233251	AC034139.1	-	lncRNA	59409	opposite	6988_ID	chr4	77172874	77232273	59400	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
6187	ENST00000515728.1_3	ENST00000510657.1_3	chr4	101581435	101596270	LINC01216	-	lncRNA	chr4	101401128	101801283	EMCN	-	processed_transcript	14835	same	7620_ID	chr4	101581436	101596270	14835	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6231	ENST00000515974.1	ENST00000486187.5_3	chr10	43100605	43100711	RNU6-1170P	+	snRNA	chr10	43077041	43134001	ZNF33B	-	processed_transcript	106	opposite	10876_ID	chr10	43100606	43100711	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
6247	ENST00000516045.1	ENST00000446160.7_7	chr3	149496795	149496895	RNU6-507P	-	snRNA	chr3	149478886	149510341	ANKUB1	-	protein_coding	100	same	11291_ID	chr3	149496796	149496895	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6253	ENST00000516059.1	ENST00000668995.1_1	chr16	72855831	72855891	RNU7-71P	-	snRNA	chr16	72699021	72856680	AC004943.2	+	lncRNA	60	opposite	11801_ID	chr16	72855832	72855891	60	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	5
6286	ENST00000516155.1	ENST00000430262.3_3	chr17	47403201	47403263	RNU7-135P	-	snRNA	chr17	47366567	47439612	ZNF652	-	protein_coding	62	same	11720_ID	chr17	47403202	47403263	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
6309	ENST00000516214.1	ENST00000331113.9_2	chr7	120312924	120313029	RNU6-581P	+	snRNA	chr7	119913228	120390391	KCND2	+	protein_coding	105	same	11353_ID	chr7	120312925	120313029	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
6311	ENST00000516218.1	ENST00000652227.1_1	chr2	177529403	177529494	RNU6ATAC14P	+	snRNA	chr2	177502463	177683908	LINC01117	+	lncRNA	91	same	11664_ID	chr2	177529404	177529494	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
6312	ENST00000516219.1	ENST00000656037.1_1	chr3	177221090	177221340	RN7SKP52	-	misc_RNA	chr3	177159714	177485167	LINC00578	+	lncRNA	250	opposite	9903_ID	chr3	177221091	177221340	250	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
6319	ENST00000516230.1	ENST00000301683.7_3	chr17	41043354	41043452	RNU6-287P	-	snRNA	chr17	41026686	41050721	LINC00671	-	lncRNA	98	same	11129_ID	chr17	41043355	41043452	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6325	ENST00000516256.1	ENST00000551227.1_1	chr14	29451508	29451616	RNU6-864P	-	snRNA	chr14	29406094	29497969	AL135878.1	+	lncRNA	108	opposite	11569_ID	chr14	29451509	29451616	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
6346	ENST00000516317.1	ENST00000304842.6_2	chr7	65809290	65809401	RNU6-313P	+	snRNA	chr7	65670320	65825430	TPST1	+	protein_coding	111	same	11148_ID	chr7	65809291	65809401	111	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6348	ENST00000516322.1	ENST00000310256.7_3	chr1	231124734	231124869	AL844165.1	-	miRNA	chr1	231114839	231136479	ARV1	+	protein_coding	135	opposite	5914_ID	chr1	231124735	231124869	135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
6349	ENST00000516323.1	ENST00000469037.2_1	chr10	38332800	38332903	RNU6-795P	-	snRNA	chr10	38299613	38354016	ZNF33A	+	protein_coding	103	opposite	11506_ID	chr10	38332801	38332903	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
6395	ENST00000516469.1	ENST00000619426.5_2	chr17	36911531	36911653	RNU6-866P	-	snRNA	chr17	36908993	36920478	PSMB3	+	protein_coding	122	opposite	11571_ID	chr17	36911532	36911653	122	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
6414	ENST00000516518.1	ENST00000352508.7_3	chr11	47461556	47461617	RNU6-1302P	-	snRNA	chr11	47459314	47470695	RAPSN	-	protein_coding	61	same	10992_ID	chr11	47461557	47461617	61	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
6416	ENST00000516525.1	ENST00000595851.5_3	chr19	58995115	58995210	RNU6-1337P	-	snRNA	chr19	58990878	59010630	SLC27A5	-	nonsense_mediated_decay	95	same	11019_ID	chr19	58995116	58995210	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6427	ENST00000516562.1	ENST00000665394.1_1	chr1	238488986	238489088	RNU6-725P	-	snRNA	chr1	238402242	238568206	AL356010.2	+	lncRNA	102	opposite	11455_ID	chr1	238488987	238489088	102	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
6442	ENST00000516594.1	ENST00000666293.1_3	chr20	18309649	18309746	RNY4P11	+	misc_RNA	chr20	18269986	18328183	AL049646.1	-	lncRNA	97	opposite	11847_ID	chr20	18309650	18309746	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
6480	ENST00000516712.1	ENST00000393216.3_3	chr9	135297027	135297077	RNU5D-2P	+	snRNA	chr9	135285597	135448706	CFAP77	+	protein_coding	50	same	10743_ID	chr9	135297028	135297077	50	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
6484	ENST00000516732.1	ENST00000663929.1_1	chr3	109216491	109216576	AC092905.1	+	miRNA	chr3	109128873	109442120	LINC01205	+	lncRNA	85	same	3170_ID	chr3	109216492	109216576	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6494	ENST00000516752.1	ENST00000525377.6_1	chr16	3119523	3119652	RNU1-125P	+	snRNA	chr16	3115641	3132193	IL32	+	protein_coding	129	same	10562_ID	chr16	3119524	3119652	129	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
6510	ENST00000516805.1	ENST00000559107.5_3	chr15	102188408	102188515	RNU6-807P	-	snRNA	chr15	102173179	102192587	TM2D3	-	protein_coding	107	same	11515_ID	chr15	102188409	102188515	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6528	ENST00000516853.1	ENST00000478300.6_3	chr3	63320462	63320543	AC099545.1	+	miRNA	chr3	63263983	63602600	SYNPR	+	protein_coding	81	same	3379_ID	chr3	63320463	63320543	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
6530	ENST00000516863.1	ENST00000472470.5_1	chr7	116073267	116073354	snoZ185	+	snoRNA	chr7	115928126	116146162	CAV2	+	processed_transcript	87	same	12475_ID	chr7	116073268	116073354	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6545	ENST00000516907.1	ENST00000648653.1_2	chr2	207124789	207124938	RN7SKP260	-	misc_RNA	chr2	207068266	207130050	GPR1-AS	+	lncRNA	149	opposite	9861_ID	chr2	207124790	207124938	149	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
6546	ENST00000516908.1	ENST00000370103.9_5	chr1	102325406	102325513	RNU6-352P	+	snRNA	chr1	102268115	102462482	OLFM3	-	protein_coding	107	opposite	11175_ID	chr1	102325407	102325513	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
6573	ENST00000516977.1	ENST00000426664.6_3	chr3	129538619	129538719	RNU6-1142P	+	snRNA	chr3	129366636	129612419	TMCC1	-	protein_coding	100	opposite	10851_ID	chr3	129538620	129538719	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6580	ENST00000517001.1	ENST00000651725.1_4	chrX	101170561	101170668	RNU6-345P	+	snRNA	chrX	101137285	101187052	ZMAT1	-	protein_coding	107	opposite	11171_ID	chrX	101170562	101170668	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
6630	ENST00000517121.1	ENST00000651919.1_1	chrX	112162359	112162458	RNU6-1015P	+	snRNA	chrX	112123790	112455413	AC002072.1	+	lncRNA	99	same	10767_ID	chrX	112162360	112162458	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
6658	ENST00000517203.1	ENST00000659962.1_1	chr10	67469817	67469902	AC022538.1	+	miRNA	chr10	67330293	67540825	LINC01515	+	lncRNA	85	same	1884_ID	chr10	67469818	67469902	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
6668	ENST00000517216.1	ENST00000654248.1_1	chr1	176212997	176213165	RNU2-12P	-	snRNA	chr1	176176835	176417055	AL591043.2	+	lncRNA	168	opposite	10619_ID	chr1	176212998	176213165	168	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6682	ENST00000517245.1	ENST00000374728.7_1	chr10	35424370	35424430	RNU7-77P	+	snRNA	chr10	35416384	35501883	CREM	+	protein_coding	60	same	11807_ID	chr10	35424371	35424430	60	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
6686	ENST00000517253.1	ENST00000314622.9_2	chr3	93817350	93817410	RNU7-108P	-	snRNA	chr3	93781904	93850676	NSUN3	+	protein_coding	60	opposite	11697_ID	chr3	93817351	93817410	60	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
6724	ENST00000517708.1_1	ENST00000524219.1_3	chr5	156531798	156541911	AC011377.1	+	lncRNA	chr5	156522418	156569880	HAVCR2	-	protein_coding	10113	opposite	1201_ID	chr5	156531799	156541911	10113	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
6726	ENST00000517796.1_3	ENST00000520096.5_3	chr8	94228153	94247107	AC016885.1	-	lncRNA	chr8	94225538	94433108	LINC00535	-	lncRNA	18954	same	1570_ID	chr8	94228154	94247107	18954	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
6728	ENST00000517897.1_1	ENST00000519738.5_3	chr8	37337606	37338327	AC124067.1	+	lncRNA	chr8	37308280	37411701	LINC01605	-	lncRNA	721	opposite	3999_ID	chr8	37337607	37338327	721	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
6734	ENST00000518031.1_1	ENST00000523949.5_3	chr8	26298006	26300111	AC011726.2	+	lncRNA	chr8	26240712	26363152	BNIP3L	+	protein_coding	2105	same	1286_ID	chr8	26298007	26300111	2105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
6741	ENST00000518178.1_3	ENST00000522460.1_1	chr8	34086811	34106464	AC087855.1	-	lncRNA	chr8	34085956	34204249	AC090993.1	+	lncRNA	19653	opposite	2853_ID	chr8	34086812	34106464	19653	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
6743	ENST00000518182.1_1	ENST00000524142.5_4	chr5	151133552	151146808	AC091982.1	+	lncRNA	chr5	151122382	151152093	ATOX1	-	protein_coding	13256	opposite	3026_ID	chr5	151133553	151146808	13256	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
6752	ENST00000518473.1_3	ENST00000671145.1_3	chr5	70668502	70670725	AC145141.2	-	lncRNA	chr5	70633008	70742599	LINC02197	-	lncRNA	14688	same	4231_ID	chr5	70668503	70670725	2223	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
6768	ENST00000518750.1_3	ENST00000520369.5_1	chr8	58943892	58945241	AC104350.1	-	lncRNA	chr8	58907126	59116838	FAM110B	+	processed_transcript	1349	opposite	3525_ID	chr8	58943893	58945241	1349	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
6778	ENST00000519185.1_1	ENST00000520920.5_3	chr8	19103859	19106750	AC068880.3	+	lncRNA	chr8	18942501	19116979	AC100849.1	-	lncRNA	2891	opposite	2455_ID	chr8	19103860	19106750	2891	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
6790	ENST00000519680.1_3	ENST00000310193.4_4	chr8	65616330	65647016	AC104232.2	-	lncRNA	chr8	65503407	65711294	CYP7B1	-	protein_coding	30686	same	3519_ID	chr8	65616331	65647016	30686	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
6800	ENST00000519929.2_4	ENST00000519570.5_1	chr5	163875166	163894885	LINC02143	-	lncRNA	chr5	163723983	164598649	AC109466.1	+	lncRNA	19719	opposite	7734_ID	chr5	163875167	163894885	19719	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
6878	ENST00000522547.1_1	ENST00000523949.5_3	chr8	26280108	26281445	AC011726.1	+	lncRNA	chr8	26240712	26363152	BNIP3L	+	protein_coding	1337	same	1285_ID	chr8	26280109	26281445	1337	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
6881	ENST00000522598.1_2	ENST00000520096.5_3	chr8	94271894	94310204	AC016885.2	+	lncRNA	chr8	94225538	94433108	LINC00535	-	lncRNA	38862	opposite	1571_ID	chr8	94271895	94310204	38310	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
6889	ENST00000522857.1_2	ENST00000523191.5_4	chr8	64617313	64664235	AC069133.1	+	lncRNA	chr8	64599736	65281115	LINC01414	-	lncRNA	48601	opposite	2469_ID	chr8	64617314	64664235	46922	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
6923	ENST00000523791.1_1	ENST00000659614.1_1	chr8	103904103	103905836	AP003354.1	+	lncRNA	chr8	103876498	104014652	MAILR	+	lncRNA	69045	same	6248_ID	chr8	103904104	103905836	1733	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
6947	ENST00000524768.1_1	ENST00000603276.5_2	chr11	75486948	75487974	AP001922.3	+	lncRNA	chr11	75470556	75508321	DGAT2	+	protein_coding	1026	same	6167_ID	chr11	75486949	75487974	1026	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
6955	ENST00000525382.1_3	ENST00000532942.5_2	chr11	32074388	32074806	AL035078.3	-	lncRNA	chr11	31837931	32126211	AL035078.4	+	protein_coding	418	opposite	4598_ID	chr11	32074389	32074806	418	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
6957	ENST00000525461.1_1	ENST00000526887.5_3	chr8	145689199	145690484	AC084125.1	+	lncRNA	chr8	145675958	145690813	CYHR1	-	protein_coding	1285	opposite	2737_ID	chr8	145689200	145690484	1285	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
6969	ENST00000526154.1_1	ENST00000659248.1_3	chr11	81682035	81698855	AP002802.1	+	lncRNA	chr11	81532313	82114955	MIR4300HG	-	lncRNA	16820	opposite	6205_ID	chr11	81682036	81698855	16820	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
6970	ENST00000526170.5_2	ENST00000524763.5_2	chr11	695795	705028	TMEM80	+	protein_coding	chr11	694437	720212	EPS8L2	+	protein_coding	9601	same	12741_ID	chr11	695796	705028	9233	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
6992	ENST00000526929.1_2	ENST00000664195.1_3	chr8	7194636	7196229	USP17L4	+	protein_coding	chr8	7156266	7212881	FAM66B	-	lncRNA	1593	opposite	12878_ID	chr8	7194637	7196229	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
6997	ENST00000526963.1_1	ENST00000410108.5_3	chr11	203622	205470	AC069287.2	+	lncRNA	chr11	167783	207383	BET1L	-	protein_coding	1848	opposite	2483_ID	chr11	203623	205470	1848	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
7006	ENST00000527083.5_3	ENST00000502161.7_2	chr11	27639172	27656069	LINC00678	-	lncRNA	chr11	27528393	27719778	BDNF-AS	+	lncRNA	17002	opposite	7572_ID	chr11	27639173	27656069	16897	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7011	ENST00000527314.1_1	ENST00000322563.8_4	chr11	75901768	75906115	AP000785.1	+	lncRNA	chr11	75897368	75917546	WNT11	-	protein_coding	4347	opposite	6028_ID	chr11	75901769	75906115	4347	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
7030	ENST00000527895.1_1	ENST00000532176.2_5	chr19	42636706	42641251	AC010247.1	+	lncRNA	chr19	42621417	42700737	POU2F2	-	protein_coding	60575	opposite	1039_ID	chr19	42636707	42641251	4545	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7050	ENST00000528638.1_1	ENST00000526761.5_6	chr11	77300435	77321054	AQP11	+	processed_transcript	chr11	77225980	77330740	CLNS1A	-	nonsense_mediated_decay	20966	opposite	6324_ID	chr11	77300436	77321054	20619	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
7054	ENST00000528781.1_3	ENST00000637683.1_3	chr11	76336505	76337878	AP001189.5	-	lncRNA	chr11	76318896	76341471	LINC02757	-	lncRNA	1373	same	6110_ID	chr11	76336506	76337878	1373	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
7072	ENST00000529559.1_2	ENST00000664195.1_3	chr8	7189908	7191501	USP17L1	+	protein_coding	chr8	7156266	7212881	FAM66B	-	lncRNA	1593	opposite	12856_ID	chr8	7189909	7191501	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7074	ENST00000529716.5_2	ENST00000675058.1_1	chr16	28648974	28670003	NPIPB8	+	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	21029	same	9292_ID	chr16	28648975	28670003	21029	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
7089	ENST00000530142.5_3	ENST00000675888.1_2	chr8	145579090	145583036	FBXL6	-	retained_intron	chr8	145557618	145584912	SLC52A2	+	protein_coding	3946	opposite	7008_ID	chr8	145579091	145583036	3946	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
7148	ENST00000531948.1_4	ENST00000657463.1_1	chr8	125948765	125956007	AC100858.1	-	lncRNA	chr8	125835943	125963337	LINC00964	+	lncRNA	7438	opposite	3440_ID	chr8	125948766	125956007	7242	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
7150	ENST00000531962.2_4	ENST00000532942.5_2	chr11	32057524	32062864	AL035078.1	-	lncRNA	chr11	31837931	32126211	AL035078.4	+	protein_coding	5340	opposite	4596_ID	chr11	32057525	32062864	5340	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
7157	ENST00000532254.1_5	ENST00000675058.1_1	chr16	28353875	28374829	NPIPB6	-	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	20954	opposite	9289_ID	chr16	28353876	28374829	20954	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
7184	ENST00000533378.1_3	ENST00000392679.5_4	chr11	126162816	126164149	AP001318.1	-	lncRNA	chr11	126152981	126164828	TIRAP	+	protein_coding	1333	opposite	6118_ID	chr11	126162817	126164149	1333	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	5
7197	ENST00000533832.1_1	ENST00000532942.5_2	chr11	32086457	32093719	AL035078.2	+	lncRNA	chr11	31837931	32126211	AL035078.4	+	protein_coding	7262	same	4597_ID	chr11	32086458	32093719	7262	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
7213	ENST00000534594.1_1	ENST00000315571.6_2	chr11	35993977	36010557	AL136146.2	+	lncRNA	chr11	35965611	36253686	LDLRAD3	+	protein_coding	16580	same	4891_ID	chr11	35993978	36010557	16580	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
7221	ENST00000535363.1_1	ENST00000359543.8_4	chr16	10623296	10625939	AC027277.1	+	lncRNA	chr16	10622278	10674455	EMP2	-	protein_coding	2643	opposite	2201_ID	chr16	10623297	10625939	2643	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
7278	ENST00000538868.2_1	ENST00000537256.5_1	chr16	87727142	87729753	AC010536.1	-	lncRNA	chr16	87635440	87731533	JPH3	+	processed_transcript	2611	opposite	1098_ID	chr16	87727143	87729753	2611	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
7320	ENST00000541383.1_3	ENST00000228506.8_2	chr12	121134926	121137304	AC069234.2	-	lncRNA	chr12	121124951	121139662	MLEC	+	protein_coding	2418	opposite	2475_ID	chr12	121134927	121137304	2378	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
7347	ENST00000543475.1_1	ENST00000353383.6_5	chr17	17679999	17682843	SMCR5	-	lncRNA	chr17	17584771	17714767	RAI1	+	protein_coding	2844	opposite	12125_ID	chr17	17680000	17682843	2844	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7368	ENST00000544108.1_1	ENST00000257247.11_6	chr11	62304783	62309490	AP001363.1	+	lncRNA	chr11	62201017	62314268	AHNAK	-	protein_coding	4707	opposite	6123_ID	chr11	62304784	62309490	4707	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
7379	ENST00000544939.1_3	ENST00000344651.5_2	chr12	121159309	121161442	AC069234.3	-	lncRNA	chr12	121148260	121161443	UNC119B	+	protein_coding	2133	opposite	2476_ID	chr12	121159310	121161442	2133	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
7387	ENST00000545258.1_1	ENST00000228438.2_4	chr12	10019625	10022407	AC091814.1	+	lncRNA	chr12	10005582	10022735	CLEC2B	-	protein_coding	2782	opposite	3013_ID	chr12	10019626	10022407	2782	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
7393	ENST00000545709.1_1	ENST00000541189.5_1	chr12	65675436	65680508	AC026124.1	+	lncRNA	chr12	65672523	65881875	MSRB3	+	protein_coding	5072	same	2116_ID	chr12	65675437	65680508	5072	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
7396	ENST00000545821.1_3	ENST00000637125.1_1	chr12	65047839	65048799	AC078962.3	-	lncRNA	chr12	64900780	65088692	RASSF3	+	protein_coding	960	opposite	2613_ID	chr12	65047840	65048799	960	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7404	ENST00000546135.1_3	ENST00000637125.1_1	chr12	64992857	65003239	AC078962.4	-	lncRNA	chr12	64900780	65088692	RASSF3	+	protein_coding	10382	opposite	2614_ID	chr12	64992858	65003239	10382	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7410	ENST00000546464.1_3	ENST00000308197.10_2	chr12	56661576	56663888	AC073896.5	-	lncRNA	chr12	56660725	56664750	COQ10A	+	protein_coding	2312	opposite	2554_ID	chr12	56661577	56663888	2312	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
7437	ENST00000547270.1_3	ENST00000465654.5_1	chr7	141672430	141673573	TAS2R38	-	protein_coding	chr7	141607612	141720880	MGAM	+	protein_coding	1143	opposite	12615_ID	chr7	141672431	141673573	1143	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7438	ENST00000547326.2_3	ENST00000266659.8_3	chr12	75877233	75883600	AC121761.1	-	lncRNA	chr12	75874534	75897643	GLIPR1	+	protein_coding	6367	opposite	3979_ID	chr12	75877234	75883600	6367	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7463	ENST00000548385.1_1	ENST00000656336.1_1	chr14	27286173	27305664	LINC02293	+	lncRNA	chr14	27068960	27764722	AL110292.1	+	lncRNA	27119	same	7757_ID	chr14	27286174	27305664	19491	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7489	ENST00000549330.1_3	ENST00000656336.1_1	chr14	27244700	27291313	LINC02294	-	lncRNA	chr14	27068960	27764722	AL110292.1	+	lncRNA	46613	opposite	7758_ID	chr14	27244701	27291313	46613	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7524	ENST00000551271.5_3	ENST00000548638.5_1	chr14	105883220	105886076	AL928654.1	-	lncRNA	chr14	105864915	105916443	TEX22	+	nonsense_mediated_decay	2856	opposite	5918_ID	chr14	105883221	105886076	2856	*	-	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7531	ENST00000551844.1_3	ENST00000228741.8_2	chr12	96616574	96617751	AC008149.1	-	lncRNA	chr12	96588152	96663602	ELK3	+	protein_coding	1177	opposite	709_ID	chr12	96616575	96617751	1177	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
7545	ENST00000552470.1_3	ENST00000652014.1_1	chr12	91011535	91016599	AC084365.1	-	lncRNA	chr12	90970271	91212080	LINC02822	+	lncRNA	5064	opposite	2746_ID	chr12	91011536	91016599	5064	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7554	ENST00000552768.1_3	ENST00000657051.1_1	chr12	50302664	50305646	LINC02396	-	lncRNA	chr12	50294093	50324109	LINC02395	+	lncRNA	2982	opposite	7770_ID	chr12	50302665	50305646	2982	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7562	ENST00000553082.1_1	ENST00000549503.1_5	chr14	30409950	30449418	AL133372.3	+	lncRNA	chr14	30133017	30661104	PRKD1	-	protein_coding	39468	opposite	4849_ID	chr14	30409951	30449418	39468	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
7596	ENST00000554022.1_3	ENST00000549233.2_6	chr12	56360621	56361258	AC025162.1	-	lncRNA	chr12	56352330	56367101	PMEL	-	protein_coding	637	same	2051_ID	chr12	56360622	56361258	637	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
7618	ENST00000554623.1_3	ENST00000556922.1_1	chr16	89986234	89989070	AC092143.2	-	lncRNA	chr16	89985572	90002500	AC092143.1	+	protein_coding	2836	opposite	3063_ID	chr16	89986235	89989070	2836	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
7638	ENST00000555403.1_3	ENST00000358473.2_4	chr14	50793243	50794627	AL359397.2	-	lncRNA	chr14	50785951	50802276	DMAC2L	+	protein_coding	1384	opposite	5485_ID	chr14	50793244	50794627	1384	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
7663	ENST00000556073.1_3	ENST00000557649.6_3	chr14	105055357	105056184	BX927359.1	-	lncRNA	chr14	105046100	105056852	C14orf180	+	protein_coding	827	opposite	6463_ID	chr14	105055358	105056184	827	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	5
7685	ENST00000556738.1_1	ENST00000556592.1_3	chr14	20728638	20732467	AL356019.2	-	lncRNA	chr14	20724716	20755899	TTC5	-	processed_transcript	3829	same	5368_ID	chr14	20728639	20732467	3829	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
7719	ENST00000557799.1_1	ENST00000570216.5_3	chr15	77952393	77960416	LINGO1-AS2	+	lncRNA	chr15	77908174	78113242	LINGO1	-	protein_coding	8023	opposite	7818_ID	chr15	77952394	77960416	8023	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
7741	ENST00000558255.1_1	ENST00000644461.1_2	chr15	39459939	39472127	AC113146.1	+	lncRNA	chr15	38920260	39472700	LINC02694	+	lncRNA	12373	same	3836_ID	chr15	39459940	39472127	12188	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
7763	ENST00000558691.1_1	ENST00000570216.5_3	chr15	77934105	77941582	LINGO1-AS1	+	lncRNA	chr15	77908174	78113242	LINGO1	-	protein_coding	10529	opposite	7817_ID	chr15	77934106	77941582	7477	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
7782	ENST00000559022.1_1	ENST00000354670.9_4	chr15	40381032	40381587	BMF-AS1	+	lncRNA	chr15	40380090	40401080	BMF	-	protein_coding	555	opposite	6423_ID	chr15	40381033	40381587	555	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
7784	ENST00000559120.1_1	ENST00000261751.8_4	chr15	78918236	78920535	AC067863.1	+	lncRNA	chr15	78916452	78933552	CHRNB4	-	protein_coding	2299	opposite	2379_ID	chr15	78918237	78920535	2299	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
7799	ENST00000559553.1_3	ENST00000558435.5_1	chr15	45722849	45734006	AC025580.1	-	lncRNA	chr15	45722776	45740959	C15orf48	+	protein_coding	11157	opposite	2100_ID	chr15	45722850	45734006	11157	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
7807	ENST00000559749.1_1	ENST00000570216.5_3	chr15	78079534	78080917	AC105133.1	+	lncRNA	chr15	77908174	78113242	LINGO1	-	protein_coding	1482	opposite	3597_ID	chr15	78079535	78080917	1383	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7808	ENST00000559786.1_1	ENST00000532176.2_5	chr19	42656720	42661675	AC010247.2	+	lncRNA	chr19	42621417	42700737	POU2F2	-	protein_coding	4955	opposite	1040_ID	chr19	42656721	42661675	4955	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7879	ENST00000561471.1_3	ENST00000675058.1_1	chr16	29000460	29002099	AC109460.4	-	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	1639	opposite	3763_ID	chr16	29000461	29002099	1639	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
7901	ENST00000561881.1_1	ENST00000646851.1_3	chr1	98432560	98434370	BX005019.1	-	lncRNA	chr1	98348819	98460556	DPYD	-	processed_transcript	1810	same	6445_ID	chr1	98432561	98434370	1810	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
7916	ENST00000562343.2_1	ENST00000637934.1_1	chr12	52211682	52213934	AC068987.3	+	lncRNA	chr12	52208826	52235890	AC068987.2	+	lncRNA	2252	same	2463_ID	chr12	52211683	52213934	2252	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	5
7921	ENST00000562409.1_1	ENST00000219204.8_2	chr16	57281261	57282404	AC009090.1	+	lncRNA	chr16	57279170	57287547	ARL2BP	+	protein_coding	1143	same	860_ID	chr16	57281262	57282404	1143	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
7925	ENST00000562450.1_1	ENST00000640345.1_3	chr16	81088905	81090031	AC092718.5	+	lncRNA	chr16	81055920	81129889	AC092718.8	-	protein_coding	1126	opposite	3131_ID	chr16	81088906	81090031	1126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
7937	ENST00000562696.1_1	ENST00000561500.5_3	chr16	69743776	69744486	AC092115.2	+	lncRNA	chr16	69740898	69760409	NQO1	-	protein_coding	710	opposite	3050_ID	chr16	69743777	69744486	710	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
7960	ENST00000562982.5_1	ENST00000668341.1_3	chr16	80574630	80584538	DYNLRB2	+	protein_coding	chr16	80188875	80597197	AC105411.1	-	lncRNA	10078	opposite	6863_ID	chr16	80574631	80584538	9908	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
7979	ENST00000563314.5_1	ENST00000675058.1_1	chr16	28834355	28848558	ATXN2L	+	retained_intron	chr16	28352754	29381593	AC009093.11	+	lncRNA	14203	same	6384_ID	chr16	28834356	28848558	14203	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
7990	ENST00000563477.1_1	ENST00000675058.1_1	chr16	29150981	29228027	AC009093.2	+	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	77046	same	867_ID	chr16	29150982	29228027	77046	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
7995	ENST00000563565.1_3	ENST00000675058.1_1	chr16	28841932	28848521	AC133550.2	-	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	6589	opposite	4110_ID	chr16	28841933	28848521	6589	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8020	ENST00000564147.1_3	ENST00000564382.5_5	chr16	68270747	68271570	AC020978.4	-	lncRNA	chr16	68267259	68271970	ESRP2	-	protein_coding	823	same	1769_ID	chr16	68270748	68271570	823	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8021	ENST00000564168.2_2	ENST00000220325.9_4	chr15	42213614	42221484	EHD4-AS1	+	lncRNA	chr15	42188130	42264755	EHD4	-	protein_coding	7870	opposite	6881_ID	chr15	42213615	42221484	7870	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
8040	ENST00000564580.5_2	ENST00000675058.1_1	chr16	29086296	29128039	RRN3P2	+	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	41743	same	11967_ID	chr16	29086297	29128039	41743	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8047	ENST00000564719.2_2	ENST00000503616.5_3	chr5	129083786	129102425	MINAR2	+	protein_coding	chr5	128836053	129241610	AC008591.1	-	lncRNA	18639	opposite	7951_ID	chr5	129083787	129102425	18639	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
8052	ENST00000564831.6_3	ENST00000675058.1_1	chr16	28505963	28510285	APOBR	+	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	4328	same	6323_ID	chr16	28505964	28510285	4322	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8056	ENST00000564919.1_1	ENST00000611932.4_4	chr16	8947168	8948204	AC022167.1	+	lncRNA	chr16	8946799	8962869	CARHSP1	-	protein_coding	1036	opposite	1836_ID	chr16	8947169	8948204	1036	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	5
8064	ENST00000565089.5_1	ENST00000675058.1_1	chr16	28943285	28950663	CD19	+	retained_intron	chr16	28352754	29381593	AC009093.11	+	lncRNA	7378	same	6592_ID	chr16	28943286	28950663	7378	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8072	ENST00000565297.2_2	ENST00000649603.1_1	chr8	79747541	79752760	LINC02605	+	lncRNA	chr8	79717527	79868317	AC083837.1	+	lncRNA	5219	same	7787_ID	chr8	79747542	79752760	5219	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8077	ENST00000565498.1_3	ENST00000568235.5_3	chr16	20754984	20777942	AC004381.1	-	lncRNA	chr16	20621564	20787242	ACSM3	+	protein_coding	22958	opposite	124_ID	chr16	20754985	20777942	22958	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
8091	ENST00000565685.1_3	ENST00000570199.2_4	chr15	43476276	43477339	AC068724.1	-	lncRNA	chr15	43398422	43477977	AC068724.3	-	lncRNA	1063	same	2436_ID	chr15	43476277	43477339	1063	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8106	ENST00000565916.1_1	ENST00000219837.12_6	chr16	19717672	19726705	AC002550.1	+	lncRNA	chr16	19713258	19729549	KNOP1	-	protein_coding	9033	opposite	66_ID	chr16	19717673	19726705	9033	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	5
8111	ENST00000565975.5_1	ENST00000675058.1_1	chr16	28986092	28995869	SPNS1	+	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	10328	same	12535_ID	chr16	28986093	28995869	9777	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8114	ENST00000566030.1_1	ENST00000668341.1_3	chr16	80213025	80214579	AC022166.2	+	lncRNA	chr16	80188875	80597197	AC105411.1	-	lncRNA	1554	opposite	1835_ID	chr16	80213026	80214579	1554	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
8119	ENST00000566144.1_3	ENST00000563778.5_2	chr16	30194856	30195884	AC012645.3	-	lncRNA	chr16	30194147	30198815	CORO1A	+	protein_coding	1453	opposite	1420_ID	chr16	30194857	30195884	1028	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8132	ENST00000566501.5_1	ENST00000675058.1_1	chr16	28699878	28746919	EIF3C	+	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	47170	same	6887_ID	chr16	28699879	28746919	47041	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8144	ENST00000566762.1_6	ENST00000675058.1_1	chr16	28925894	28947847	RABEP2	-	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	32106	opposite	9693_ID	chr16	28925895	28947847	21953	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8152	ENST00000566956.1_3	ENST00000675058.1_1	chr16	28890277	28891241	ATP2A1-AS1	-	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	964	opposite	6371_ID	chr16	28890278	28891241	964	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8155	ENST00000566974.1_3	ENST00000560674.5_1	chr15	99669036	99672011	AC036108.2	-	lncRNA	chr15	99638419	99675798	SYNM	+	protein_coding	2975	opposite	2269_ID	chr15	99669037	99672011	2975	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
8158	ENST00000566997.1_1	ENST00000211076.5_3	chr16	1307339	1308075	AC120498.2	+	lncRNA	chr16	1306069	1309009	TPSD1	+	protein_coding	736	same	3963_ID	chr16	1307340	1308075	736	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
8171	ENST00000567209.2_3	ENST00000675058.1_1	chr16	28985282	28990145	AC109460.1	-	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	4863	opposite	3759_ID	chr16	28985283	28990145	4863	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8194	ENST00000567731.1_3	ENST00000675058.1_1	chr16	28873486	28874661	AC133550.3	-	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	1175	opposite	4112_ID	chr16	28873487	28874661	1175	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8204	ENST00000567984.1_3	ENST00000675058.1_1	chr16	29273593	29275800	AC009093.4	-	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	2207	opposite	868_ID	chr16	29273594	29275800	2207	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8207	ENST00000568075.1_6	ENST00000675058.1_1	chr16	28513294	28523372	IL27	-	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	12690	opposite	7352_ID	chr16	28513295	28523372	10078	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8216	ENST00000568183.1_3	ENST00000675058.1_1	chr16	28831890	28833354	AC145285.3	-	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	1464	opposite	4237_ID	chr16	28831891	28833354	1464	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8219	ENST00000568275.1_3	ENST00000668341.1_3	chr16	80581738	80586411	AC108097.1	-	lncRNA	chr16	80188875	80597197	AC105411.1	-	lncRNA	4673	same	3721_ID	chr16	80581739	80586411	4673	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8228	ENST00000568362.5_1	ENST00000640345.1_3	chr16	81103458	81110203	AC092718.6	+	lncRNA	chr16	81055920	81129889	AC092718.8	-	protein_coding	6745	opposite	3134_ID	chr16	81103459	81110203	6745	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
8256	ENST00000569125.1_4	ENST00000561796.5_3	chr16	66503877	66515133	BEAN1-AS1	-	lncRNA	chr16	66461273	66527432	BEAN1	+	protein_coding	11435	opposite	6409_ID	chr16	66503878	66515133	11256	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
8257	ENST00000569147.1_3	ENST00000650688.1_1	chr16	87430309	87433901	AC010531.3	-	lncRNA	chr16	87417558	87438385	MAP1LC3B	+	protein_coding	3592	opposite	1093_ID	chr16	87430310	87433901	3592	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
8267	ENST00000569430.7_9	ENST00000675058.1_1	chr16	28486716	28506871	CLN3	-	protein_coding	chr16	28352754	29381593	AC009093.11	+	lncRNA	21465	opposite	6666_ID	chr16	28486717	28506871	20155	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8283	ENST00000569969.5_2	ENST00000675058.1_1	chr16	28986124	29002096	AC109460.3	+	retained_intron	chr16	28352754	29381593	AC009093.11	+	lncRNA	15972	same	3762_ID	chr16	28986125	29002096	15972	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8303	ENST00000570444.1_3	ENST00000575310.1_1	chr17	7339875	7340842	AC113189.1	-	lncRNA	chr17	7323421	7347400	AC113189.2	+	lncRNA	967	opposite	3840_ID	chr17	7339876	7340842	967	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
8319	ENST00000571138.5_1	ENST00000250076.7_5	chr17	5014762	5017674	ZNF232-AS1	+	lncRNA	chr17	5008929	5026397	ZNF232	-	protein_coding	2915	opposite	13031_ID	chr17	5014763	5017674	2912	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
8331	ENST00000571939.1_3	ENST00000558583.3_3	chr16	13291462	13298764	AC009134.1	-	lncRNA	chr16	12995454	13334273	SHISA9	+	protein_coding	7302	opposite	900_ID	chr16	13291463	13298764	7302	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
8342	ENST00000572594.1_1	ENST00000300784.8_2	chr17	80702943	80703585	AC024361.1	+	lncRNA	chr17	80693490	80709072	FN3K	+	protein_coding	642	same	2014_ID	chr17	80702944	80703585	642	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
8374	ENST00000574245.1_1	ENST00000574298.6_2	chr16	3357572	3358393	AC004232.1	-	lncRNA	chr16	3355471	3368852	ZNF75A	+	protein_coding	821	opposite	115_ID	chr16	3357573	3358393	821	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8375	ENST00000574246.1_1	ENST00000285243.7_4	chr17	48770808	48772810	AC005921.2	+	lncRNA	chr17	48770558	48785275	ANKRD40	-	protein_coding	2002	opposite	387_ID	chr17	48770809	48772810	2002	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
8379	ENST00000574460.1_1	ENST00000575858.5_3	chr17	9450614	9451858	AC087501.3	+	lncRNA	chr17	9153788	9479152	STX8	-	nonsense_mediated_decay	1244	opposite	2828_ID	chr17	9450615	9451858	1244	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
8421	ENST00000576477.1_1	ENST00000575858.5_3	chr17	9368058	9370739	AC087501.2	+	lncRNA	chr17	9153788	9479152	STX8	-	nonsense_mediated_decay	2681	opposite	2826_ID	chr17	9368059	9370739	2681	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
8442	ENST00000577215.1	ENST00000502387.5_1	chr5	122358183	122358478	RN7SL689P	-	misc_RNA	chr5	122272427	122365049	SNX24	+	processed_transcript	295	opposite	10367_ID	chr5	122358184	122358478	295	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
8455	ENST00000577285.1	ENST00000649279.2_5	chr18	42550046	42550131	MIR4319	-	miRNA	chr18	42260852	42648475	SETBP1	+	protein_coding	85	opposite	8511_ID	chr18	42550047	42550131	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
8465	ENST00000577345.1	ENST00000522279.5_1	chr8	136252032	136252102	AC022681.1	+	miRNA	chr8	136246373	136311962	LINC01591	+	lncRNA	70	same	1899_ID	chr8	136252033	136252102	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8466	ENST00000577346.1_1	ENST00000441885.8_3	chr17	11191521	11194128	AC005725.1	+	lncRNA	chr17	11144529	11467380	SHISA6	+	protein_coding	23507	same	340_ID	chr17	11191522	11194128	2607	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
8472	ENST00000577374.1	ENST00000608254.1	chrX	22655108	22655194	AC092832.1	+	miRNA	chrX	22277913	23311263	RP11-40F8.2	-	lincRNA	86	opposite	3156_ID	chrX	22655109	22655194	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
8477	ENST00000577387.1	ENST00000439980.7_2	chrX	71443093	71443403	RN7SL264P	-	misc_RNA	chrX	71401614	71522776	PIN4	+	nonsense_mediated_decay	310	opposite	10062_ID	chrX	71443094	71443403	310	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
8486	ENST00000577421.1	ENST00000533058.5_1	chr11	118889653	118889722	MIR3656	+	miRNA	chr11	118889475	118896164	TRAPPC4	+	protein_coding	69	same	8365_ID	chr11	118889654	118889722	69	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
8492	ENST00000577467.1	ENST00000396981.6_3	chr17	4267462	4267748	RN7SL774P	-	misc_RNA	chr17	4172553	4269777	UBE2G1	-	protein_coding	286	same	10422_ID	chr17	4267463	4267748	286	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8514	ENST00000577590.1	ENST00000675058.1_1	chr16	28855239	28855328	MIR4721	-	miRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	89	opposite	8709_ID	chr16	28855240	28855328	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8577	ENST00000577868.1	ENST00000209875.9_4	chr12	54625180	54625260	MIR3198-2	-	miRNA	chr12	54624725	54673906	CBX5	-	protein_coding	80	same	8308_ID	chr12	54625181	54625260	80	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
8611	ENST00000578108.1	ENST00000407936.5_1	chr22	38384800	38384860	MIR4534	+	miRNA	chr22	38349703	38437113	POLR2F	+	protein_coding	60	same	8613_ID	chr22	38384801	38384860	60	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
8623	ENST00000578180.1	ENST00000671358.1_3	chr7	7106241	7106323	AC092104.2	-	miRNA	chr7	6992255	7144113	AC079804.3	-	lncRNA	82	same	3044_ID	chr7	7106242	7106323	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8642	ENST00000578311.1	ENST00000344651.5_2	chr12	121160995	121161069	MIR4700	+	miRNA	chr12	121148260	121161443	UNC119B	+	protein_coding	74	same	8687_ID	chr12	121160996	121161069	74	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	5
8646	ENST00000578326.1	ENST00000453451.5_1	chr2	35034319	35034623	RN7SL602P	-	misc_RNA	chr2	35024916	35388178	AC012593.1	+	lncRNA	304	opposite	10299_ID	chr2	35034320	35034623	304	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8714	ENST00000578728.1	ENST00000663294.1_1	chr1	71607657	71607751	AL360297.1	-	miRNA	chr1	71547035	71953406	ZRANB2-AS2	+	lncRNA	94	opposite	5531_ID	chr1	71607658	71607751	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
8716	ENST00000578736.1	ENST00000336418.9_4	chr15	90427162	90427262	MIR5009	-	miRNA	chr15	90373830	90437226	AP3S2	-	protein_coding	100	same	8812_ID	chr15	90427163	90427262	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
8721	ENST00000578760.1	ENST00000523063.5_1	chr8	33573301	33573586	RN7SL457P	+	misc_RNA	chr8	33462373	33896003	AF279873.3	+	lncRNA	285	same	10198_ID	chr8	33573302	33573586	285	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
8722	ENST00000578766.1	ENST00000336418.9_4	chr15	90393868	90393953	MIR5094	-	miRNA	chr15	90373830	90437226	AP3S2	-	protein_coding	85	same	8837_ID	chr15	90393869	90393953	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
8736	ENST00000578855.1	ENST00000675058.1_1	chr16	28969903	28969982	MIR4517	+	miRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	79	same	8596_ID	chr16	28969904	28969982	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8763	ENST00000579037.1_1	ENST00000359042.6_2	chr17	71239231	71240845	AC087301.1	+	lncRNA	chr17	71228760	71245086	C17orf80	+	protein_coding	1614	same	2805_ID	chr17	71239232	71240845	1614	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
8834	ENST00000579472.1	ENST00000436290.2_3	chr13	88270919	88270995	MIR4500	-	miRNA	chr13	88096241	88323218	MIR4500HG	-	lncRNA	76	same	8583_ID	chr13	88270920	88270995	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8839	ENST00000579498.1	ENST00000533516.2_4	chr8	125834219	125834300	MIR4662B	-	miRNA	chr8	125823467	125860354	AC100858.2	-	lncRNA	81	same	8652_ID	chr8	125834220	125834300	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
8857	ENST00000579576.1	ENST00000595851.5_3	chr19	59002213	59002488	RN7SL693P	-	misc_RNA	chr19	58990878	59010630	SLC27A5	-	nonsense_mediated_decay	275	same	10369_ID	chr19	59002214	59002488	275	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
8864	ENST00000579641.2_1	ENST00000575858.5_3	chr17	9186490	9208968	AC005695.2	+	lncRNA	chr17	9153788	9479152	STX8	-	nonsense_mediated_decay	22478	opposite	330_ID	chr17	9186491	9208968	22478	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
8901	ENST00000579824.1	ENST00000315571.6_2	chr11	36031647	36031754	MIR3973	+	miRNA	chr11	35965611	36253686	LDLRAD3	+	protein_coding	107	same	8446_ID	chr11	36031648	36031754	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8912	ENST00000579890.1	ENST00000637822.1_5	chr16	54583214	54583308	AC079412.1	-	miRNA	chr16	54576719	54593012	LINC02183	-	lncRNA	94	same	2661_ID	chr16	54583215	54583308	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
8924	ENST00000579939.1	ENST00000444115.5_4	chr3	48529744	48529838	AC104448.1	-	miRNA	chr3	48509268	48542259	SHISA5	-	protein_coding	94	same	3535_ID	chr3	48529745	48529838	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
8928	ENST00000579966.1	ENST00000520968.5_3	chr5	154209017	154209100	MIR378H	+	miRNA	chr5	154204043	154238812	FAXDC2	-	protein_coding	83	opposite	8406_ID	chr5	154209018	154209100	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
8936	ENST00000580000.1	ENST00000571995.6_4	chr17	80626108	80626183	MIR4525	-	miRNA	chr17	80612848	80656574	RAB40B	-	protein_coding	75	same	8607_ID	chr17	80626109	80626183	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
8946	ENST00000580089.1	ENST00000412294.5_1	chr2	12339255	12339327	MIR3681	+	miRNA	chr2	12147253	12718474	MIR3681HG	+	lncRNA	72	same	8385_ID	chr2	12339256	12339327	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
8963	ENST00000580221.1	ENST00000650950.1_1	chr19	57230570	57230655	AC006115.1	-	miRNA	chr19	57106680	57310970	ZIM2-AS1	+	lncRNA	85	opposite	418_ID	chr19	57230571	57230655	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
8972	ENST00000580256.3_4	ENST00000647474.1_1	chr17	10725786	10741404	PIRT	-	protein_coding	chr17	10633093	10784212	AC015908.7	+	lncRNA	15618	opposite	9563_ID	chr17	10725787	10741404	15618	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
8976	ENST00000580311.1_3	ENST00000395825.4_4	chr17	16461298	16462583	AC127540.1	-	lncRNA	chr17	16450267	16472518	ZNF287	-	protein_coding	1285	same	4044_ID	chr17	16461299	16462583	1285	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
8986	ENST00000580342.1	ENST00000671358.1_3	chr7	7107817	7107900	AC092104.5	-	miRNA	chr7	6992255	7144113	AC079804.3	-	lncRNA	83	same	3047_ID	chr7	7107818	7107900	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9014	ENST00000580494.1	ENST00000366209.6_5	chr2	34011104	34011205	AC069303.1	-	miRNA	chr2	33931952	34522820	LINC01320	+	lncRNA	101	opposite	2484_ID	chr2	34011105	34011205	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9024	ENST00000580546.1	ENST00000608949.5_1	chr1	227832980	227833067	AL592310.1	+	miRNA	chr1	227751243	227865144	ZNF678	+	protein_coding	87	same	5811_ID	chr1	227832981	227833067	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
9037	ENST00000580594.1	ENST00000671358.1_3	chr7	7106997	7107080	AC092104.1	-	miRNA	chr7	6992255	7144113	AC079804.3	-	lncRNA	83	same	3043_ID	chr7	7106998	7107080	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9072	ENST00000580765.1	ENST00000435237.1_1	chr2	22145864	22146160	RN7SL117P	+	misc_RNA	chr2	21444046	22193831	AC018742.1	+	lncRNA	296	same	9952_ID	chr2	22145865	22146160	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9084	ENST00000580820.1	ENST00000299563.5_2	chr11	74464518	74464629	AP000560.1	-	miRNA	chr11	74459893	74553458	RNF169	+	protein_coding	111	opposite	6002_ID	chr11	74464519	74464629	111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9089	ENST00000580847.1	ENST00000671358.1_3	chr7	7106594	7106676	MIR3683	-	miRNA	chr7	6992255	7144113	AC079804.3	-	lncRNA	82	same	8387_ID	chr7	7106595	7106676	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9091	ENST00000580852.1	ENST00000393693.7_5	chr5	176056439	176056501	MIR4281	-	miRNA	chr5	176047082	176057535	SNCB	-	protein_coding	62	same	8477_ID	chr5	176056440	176056501	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
9118	ENST00000580971.1	ENST00000426559.6_3	chr1	26232852	26232945	MIR3917	-	miRNA	chr1	26211930	26232957	STMN1	-	protein_coding	93	same	8421_ID	chr1	26232853	26232945	93	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
9126	ENST00000581016.1	ENST00000659248.1_3	chr11	81601782	81601878	MIR4300	-	miRNA	chr11	81532313	82114955	MIR4300HG	-	lncRNA	96	same	8495_ID	chr11	81601783	81601878	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9127	ENST00000581017.1	ENST00000671358.1_3	chr7	7108453	7108535	AC092104.4	-	miRNA	chr7	6992255	7144113	AC079804.3	-	lncRNA	82	same	3046_ID	chr7	7108454	7108535	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9138	ENST00000581083.1_3	ENST00000433206.6_1	chr17	37059956	37060853	AC006441.1	-	lncRNA	chr17	37026111	37078022	LASP1	+	protein_coding	897	opposite	462_ID	chr17	37059957	37060853	897	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
9156	ENST00000581197.1	ENST00000323777.8_5	chr17	56533484	56533575	AC023992.1	-	miRNA	chr17	56497527	56565769	HSF5	-	protein_coding	91	same	1991_ID	chr17	56533485	56533575	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
9158	ENST00000581228.1	ENST00000659856.1_1	chr20	59139619	59139683	MIR548AG2	+	miRNA	chr20	58713521	59228842	MIR646HG	+	lncRNA	64	same	8871_ID	chr20	59139620	59139683	64	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9167	ENST00000581297.1	ENST00000366209.6_5	chr2	34152450	34152539	AC097506.1	+	miRNA	chr2	33931952	34522820	LINC01320	+	lncRNA	89	same	3323_ID	chr2	34152451	34152539	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
9179	ENST00000581367.1	ENST00000264775.9_5	chr5	54804677	54804754	MIR5687	-	miRNA	chr5	54720681	54830797	PLPP1	-	protein_coding	77	same	8958_ID	chr5	54804678	54804754	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9194	ENST00000581461.1	ENST00000360737.4_1	chr22	46509445	46509537	MIR4763	+	miRNA	chr22	46481882	46509808	MIRLET7BHG	+	lncRNA	92	same	8750_ID	chr22	46509446	46509537	92	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	5	5
9202	ENST00000581525.1	ENST00000396651.8_2	chr1	45241535	45241615	SNORD55	+	snoRNA	chr1	45241211	45244451	RPS8	+	protein_coding	80	same	12422_ID	chr1	45241536	45241615	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9204	ENST00000581537.1	ENST00000399848.7_2	chr18	13459945	13460025	MIR5190	+	miRNA	chr18	13218785	13652754	LDLRAD4	+	protein_coding	80	same	8852_ID	chr18	13459946	13460025	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9217	ENST00000581636.1_1	ENST00000326005.10_3	chr15	64988820	64989060	AC100830.2	+	lncRNA	chr15	64979771	64995480	OAZ2	-	protein_coding	240	opposite	3429_ID	chr15	64988821	64989060	240	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9257	ENST00000581847.1	ENST00000671358.1_3	chr7	7107674	7107757	AC092104.3	-	miRNA	chr7	6992255	7144113	AC079804.3	-	lncRNA	83	same	3045_ID	chr7	7107675	7107757	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9264	ENST00000581880.1	ENST00000396703.6_3	chr3	23521987	23522069	AC092038.2	-	miRNA	chr3	23244817	23633285	UBE2E2	+	protein_coding	82	opposite	3030_ID	chr3	23521988	23522069	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
9269	ENST00000581900.1	ENST00000370375.8_2	chr1	92694812	92694896	AL451010.1	-	miRNA	chr1	92683471	92711370	C1orf146	+	protein_coding	84	opposite	5665_ID	chr1	92694813	92694896	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9270	ENST00000581901.1_1	ENST00000582441.1_3	chr17	26201670	26208263	AC005697.2	+	lncRNA	chr17	26125831	26220391	AC005697.1	-	protein_coding	6593	opposite	332_ID	chr17	26201671	26208263	6593	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
9280	ENST00000581943.1	ENST00000659856.1_1	chr20	59053168	59053239	MIR4533	+	miRNA	chr20	58713521	59228842	MIR646HG	+	lncRNA	71	same	8612_ID	chr20	59053169	59053239	71	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
9293	ENST00000581997.1	ENST00000344458.6_1	chr2	220413794	220413869	MIR3132	-	miRNA	chr2	220408384	220415301	TMEM198	+	protein_coding	75	opposite	8255_ID	chr2	220413795	220413869	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9308	ENST00000582110.1	ENST00000362077.4_1	chr21	35677429	35677493	AP000318.1	+	miRNA	chr21	35445891	35732332	AP000317.2	+	lncRNA	64	same	5976_ID	chr21	35677430	35677493	64	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
9356	ENST00000582334.1_1	ENST00000647474.1_1	chr17	10695375	10698302	AC015908.4	+	lncRNA	chr17	10633093	10784212	AC015908.7	+	lncRNA	2927	same	1499_ID	chr17	10695376	10698302	2927	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
9364	ENST00000582372.1	ENST00000232607.7_3	chr3	124451285	124451363	MIR544B	+	miRNA	chr3	124449298	124468120	UMPS	+	protein_coding	78	same	8864_ID	chr3	124451286	124451363	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9366	ENST00000582386.1_1	ENST00000584361.1_1	chr18	6557820	6558653	AP005202.1	+	lncRNA	chr18	6511414	6590652	LINC01387	+	lncRNA	833	same	6295_ID	chr18	6557821	6558653	833	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
9380	ENST00000582458.1	ENST00000302609.8_4	chr10	38243849	38243919	AL117337.1	-	miRNA	chr10	38238500	38265575	ZNF25	-	protein_coding	70	same	4726_ID	chr10	38243850	38243919	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9421	ENST00000582718.1_3	ENST00000422514.7_2	chr17	27048504	27049895	AC010761.1	-	lncRNA	chr17	27047002	27051377	RPL23A	+	protein_coding	1391	opposite	1138_ID	chr17	27048505	27049895	1391	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
9434	ENST00000582802.1	ENST00000656336.1_1	chr14	27377847	27377931	MIR4307	+	miRNA	chr14	27068960	27764722	AL110292.1	+	lncRNA	84	same	8501_ID	chr14	27377848	27377931	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
9456	ENST00000582890.1	ENST00000524717.6_4	chr11	96074601	96074690	MIR1260B	+	miRNA	chr11	95709761	96076359	MAML2	-	protein_coding	89	opposite	8017_ID	chr11	96074602	96074690	89	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	5
9465	ENST00000582929.1	ENST00000532176.2_5	chr19	42637596	42637665	MIR4323	-	miRNA	chr19	42621417	42700737	POU2F2	-	protein_coding	69	same	8517_ID	chr19	42637597	42637665	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
9484	ENST00000583044.1_1	ENST00000326005.10_3	chr15	64987239	64987793	AC100830.3	+	lncRNA	chr15	64979771	64995480	OAZ2	-	protein_coding	554	opposite	3430_ID	chr15	64987240	64987793	554	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9486	ENST00000583069.1	ENST00000628659.2_4	chr2	70302149	70302404	RN7SL470P	-	misc_RNA	chr2	70190385	70330041	PCBP1-AS1	-	lncRNA	255	same	10209_ID	chr2	70302150	70302404	255	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9504	ENST00000583168.1	ENST00000399848.7_2	chr18	13611112	13611199	MIR4526	+	miRNA	chr18	13218785	13652754	LDLRAD4	+	protein_coding	87	same	8608_ID	chr18	13611113	13611199	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9505	ENST00000583183.1	ENST00000663929.1_1	chr3	109321674	109321744	MIR4445	+	miRNA	chr3	109128873	109442120	LINC01205	+	lncRNA	70	same	8545_ID	chr3	109321675	109321744	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
9530	ENST00000583292.1	ENST00000671393.1_1	chr2	185243701	185243771	MIR548AE1	+	miRNA	chr2	185069098	185247596	AC020584.1	+	lncRNA	70	same	8870_ID	chr2	185243702	185243771	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9541	ENST00000583393.1	ENST00000216410.8_4	chr14	53252294	53252581	RN7SL588P	+	misc_RNA	chr14	53241910	53258325	GNPNAT1	-	protein_coding	287	opposite	10288_ID	chr14	53252295	53252581	287	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9577	ENST00000583596.1	ENST00000370151.9_2	chr10	103361173	103361254	MIR3158-1	+	miRNA	chr10	103348077	103369419	DPCD	+	protein_coding	81	same	8280_ID	chr10	103361174	103361254	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9578	ENST00000583598.1_1	ENST00000353383.6_5	chr17	17681094	17682408	AC122129.2	+	lncRNA	chr17	17584771	17714767	RAI1	+	protein_coding	1314	same	3983_ID	chr17	17681095	17682408	1314	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
9612	ENST00000583762.1	ENST00000487915.6_3	chr14	34446515	34446597	AL358340.1	-	miRNA	chr14	34398304	34692083	EGLN3	-	protein_coding	82	same	5453_ID	chr14	34446516	34446597	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9618	ENST00000583820.1	ENST00000293604.10_2	chr6	30616442	30616536	AL662800.2	+	miRNA	chr6	30614815	30620986	C6orf136	+	protein_coding	94	same	5872_ID	chr6	30616443	30616536	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9621	ENST00000583829.1	ENST00000371950.3_1	chrX	113870730	113870837	AC007025.1	+	miRNA	chrX	113818554	114144624	HTR2C	+	protein_coding	107	same	497_ID	chrX	113870731	113870837	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
9633	ENST00000583919.1	ENST00000319104.7_3	chr8	42751339	42751418	MIR4469	-	miRNA	chr8	42704779	42751728	RNF170	-	protein_coding	79	same	8560_ID	chr8	42751340	42751418	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9636	ENST00000583935.1	ENST00000370318.5_4	chr6	74142706	74142807	AC019205.2	+	miRNA	chr6	74123237	74161982	CGAS	-	protein_coding	101	opposite	1698_ID	chr6	74142707	74142807	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
9687	ENST00000584174.1	ENST00000261858.7_3	chr15	69452989	69453063	AC026512.1	+	miRNA	chr15	69452973	69564546	GLCE	+	protein_coding	74	same	2160_ID	chr15	69452990	69453063	74	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	5
9720	ENST00000584363.1	ENST00000587091.6_3	chrX	73673457	73673691	RN7SL641P	-	misc_RNA	chrX	73641327	73753751	SLC16A2	+	protein_coding	234	opposite	10329_ID	chrX	73673458	73673691	234	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9765	ENST00000584622.1	ENST00000216468.8_4	chr14	77817614	77817902	RN7SL137P	-	misc_RNA	chr14	77801371	77843437	TMED8	-	protein_coding	288	same	9971_ID	chr14	77817615	77817902	288	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
9782	ENST00000584735.1	ENST00000455905.1_1	chr7	99184537	99184622	AC005020.1	+	miRNA	chr7	99156317	99205433	AC005020.2	+	nonsense_mediated_decay	85	same	216_ID	chr7	99184538	99184622	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
9786	ENST00000584748.1	ENST00000601669.6_1	chr19	35905786	35906051	RN7SL491P	-	misc_RNA	chr19	35890432	35910272	LINC01531	+	lncRNA	265	opposite	10223_ID	chr19	35905787	35906051	265	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
9788	ENST00000584756.1	ENST00000468251.5_1	chr10	111764011	111764315	RN7SL450P	+	misc_RNA	chr10	111756125	111878366	ADD3	+	processed_transcript	304	same	10192_ID	chr10	111764012	111764315	304	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9836	ENST00000585048.1_4	ENST00000580770.5_1	chr17	16343792	16344266	AC093484.4	-	lncRNA	chr17	16342350	16381992	SNHG29	+	lncRNA	474	opposite	3209_ID	chr17	16343793	16344266	474	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
9837	ENST00000585049.1	ENST00000369489.10_5	chr1	117102645	117102733	MIR548AC	-	miRNA	chr1	117057155	117113648	CD58	-	protein_coding	88	same	8869_ID	chr1	117102646	117102733	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
9842	ENST00000585070.1	ENST00000292114.8_2	chr17	26687676	26687757	MIR4723	+	miRNA	chr17	26684669	26690705	TMEM199	+	protein_coding	81	same	8711_ID	chr17	26687677	26687757	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9851	ENST00000585107.1	ENST00000443943.5_1	chr7	100802753	100802836	MIR4653	+	miRNA	chr7	100797763	100804877	AP1S1	+	nonsense_mediated_decay	83	same	8640_ID	chr7	100802754	100802836	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9869	ENST00000585195.1	ENST00000372072.7_3	chrX	109325345	109325446	MIR3978	+	miRNA	chrX	109245862	109421012	TMEM164	+	protein_coding	101	same	8448_ID	chrX	109325346	109325446	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
9875	ENST00000585225.1	ENST00000243347.5_2	chr2	152224847	152224925	MIR4773-1	+	miRNA	chr2	152214105	152236560	TNFAIP6	+	protein_coding	78	same	8761_ID	chr2	152224848	152224925	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
9894	ENST00000585366.1_3	ENST00000399848.7_2	chr18	13514518	13522887	AP005131.1	-	lncRNA	chr18	13218785	13652754	LDLRAD4	+	protein_coding	8369	opposite	6286_ID	chr18	13514519	13522887	8369	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9912	ENST00000585817.1_3	ENST00000399848.7_2	chr18	13461018	13470822	AP005131.5	-	lncRNA	chr18	13218785	13652754	LDLRAD4	+	protein_coding	9804	opposite	6290_ID	chr18	13461019	13470822	9804	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
9922	ENST00000586051.1_1	ENST00000222120.8_4	chr19	11432831	11434871	AC011472.3	+	lncRNA	chr19	11432743	11450333	RAB3D	-	protein_coding	2040	opposite	1238_ID	chr19	11432832	11434871	2040	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	5
9946	ENST00000586713.5_7	ENST00000262768.11_4	chr17	76866991	76899297	CEP295NL	-	protein_coding	chr17	76849058	76921469	TIMP2	-	protein_coding	32308	same	6623_ID	chr17	76866992	76899297	32306	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
9957	ENST00000587076.1_1	ENST00000651507.1_3	chr17	33805012	33805463	AC015911.5	+	lncRNA	chr17	33801922	33864880	SLFN12L	-	lncRNA	451	opposite	1503_ID	chr17	33805013	33805463	451	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
9970	ENST00000587434.1_1	ENST00000262768.11_4	chr17	76851559	76851926	AC022966.1	+	lncRNA	chr17	76849058	76921469	TIMP2	-	protein_coding	367	opposite	1923_ID	chr17	76851560	76851926	367	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
9980	ENST00000587759.1_1	ENST00000592883.5_4	chr19	6067963	6077130	AC011444.2	+	lncRNA	chr19	6040084	6199540	RFX2	-	protein_coding	9167	opposite	1211_ID	chr19	6067964	6077130	9167	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
9995	ENST00000588204.1_3	ENST00000399848.7_2	chr18	13362201	13366242	AP002439.1	-	lncRNA	chr18	13218785	13652754	LDLRAD4	+	protein_coding	4041	opposite	6187_ID	chr18	13362202	13366242	4041	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
10000	ENST00000588342.1_1	ENST00000592883.5_4	chr19	6109332	6125808	AC011444.3	+	lncRNA	chr19	6040084	6199540	RFX2	-	protein_coding	16476	opposite	1212_ID	chr19	6109333	6125808	16476	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
10008	ENST00000588672.1_3	ENST00000399848.7_2	chr18	13419419	13427479	LDLRAD4-AS1	-	lncRNA	chr18	13218785	13652754	LDLRAD4	+	protein_coding	8060	opposite	7519_ID	chr18	13419420	13427479	8060	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
10017	ENST00000589045.1_3	ENST00000399848.7_2	chr18	13500639	13501288	AP005131.2	-	lncRNA	chr18	13218785	13652754	LDLRAD4	+	protein_coding	649	opposite	6287_ID	chr18	13500640	13501288	649	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
10025	ENST00000589471.1_4	ENST00000592806.1_2	chr19	28340637	28380130	AC006504.2	-	lncRNA	chr19	28284395	28475892	AC006504.5	+	lncRNA	39588	opposite	472_ID	chr19	28340638	28380130	39493	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10040	ENST00000590042.1_3	ENST00000399848.7_2	chr18	13561397	13565034	AP005131.3	-	lncRNA	chr18	13218785	13652754	LDLRAD4	+	protein_coding	3637	opposite	6288_ID	chr18	13561398	13565034	3637	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
10047	ENST00000590191.1_2	ENST00000588099.1_3	chr16	4784480	4799396	C16orf71	+	protein_coding	chr16	4780115	4802566	AC020663.1	-	lncRNA	15053	opposite	6480_ID	chr16	4784481	4799396	14916	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
10059	ENST00000590468.1_3	ENST00000399848.7_2	chr18	13471848	13472669	AP005131.4	-	lncRNA	chr18	13218785	13652754	LDLRAD4	+	protein_coding	821	opposite	6289_ID	chr18	13471849	13472669	821	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
10069	ENST00000590912.1_1	ENST00000435968.5_3	chr7	20135759	20170098	AC007001.1	+	lncRNA	chr7	19958822	20179997	AC005062.1	-	lncRNA	34339	opposite	493_ID	chr7	20135760	20170098	34339	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10076	ENST00000591103.1_2	ENST00000627670.3_3	chr2	118756320	118757056	AC009303.3	+	lncRNA	chr2	118754299	118812292	AC009303.2	+	lncRNA	736	same	942_ID	chr2	118756321	118757056	736	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10100	ENST00000591837.1_1	ENST00000292431.5_2	chr19	13242384	13243224	AC005546.1	+	lncRNA	chr19	13229077	13251961	NACC1	+	protein_coding	840	same	314_ID	chr19	13242385	13243224	840	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10108	ENST00000592276.1	ENST00000221496.5_2	chr19	2250637	2250717	MIR4321	+	miRNA	chr19	2249321	2252072	AMH	+	protein_coding	80	same	8514_ID	chr19	2250638	2250717	80	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
10111	ENST00000592368.1_1	ENST00000585814.1_3	chr19	3558012	3558484	AC005786.2	+	lncRNA	chr19	3547288	3573849	MFSD12	-	nonsense_mediated_decay	472	opposite	356_ID	chr19	3558013	3558484	472	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10120	ENST00000592655.1_3	ENST00000399848.7_2	chr18	13234943	13236469	AP002505.1	-	lncRNA	chr18	13218785	13652754	LDLRAD4	+	protein_coding	1526	opposite	6192_ID	chr18	13234944	13236469	1526	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10121	ENST00000592671.1_3	ENST00000171111.10_5	chr19	10601014	10601676	AC011461.1	-	lncRNA	chr19	10596800	10614032	KEAP1	-	protein_coding	662	same	1219_ID	chr19	10601015	10601676	662	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
10149	ENST00000593662.1_4	ENST00000622727.4_3	chrX	72158002	72158798	FAM236A	+	protein_coding	chrX	72091858	72163643	DMRTC1	-	nonsense_mediated_decay	796	opposite	6974_ID	chrX	72158003	72158798	796	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10151	ENST00000593729.5_3	ENST00000598884.1_3	chr19	8373651	8386259	NDUFA7	-	nonsense_mediated_decay	chr19	8373166	8386263	AC010323.1	-	nonsense_mediated_decay	12608	same	9245_ID	chr19	8373652	8386259	12608	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	5
10155	ENST00000593791.1_3	ENST00000539106.5_2	chr19	18679315	18680185	AC005253.2	-	lncRNA	chr19	18668571	18680197	KXD1	+	protein_coding	870	opposite	262_ID	chr19	18679316	18680185	870	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
10189	ENST00000595064.1_1	ENST00000291934.4_2	chr19	55888946	55889493	AC020922.3	-	lncRNA	chr19	55888193	55889614	TMEM190	+	protein_coding	547	opposite	1762_ID	chr19	55888947	55889493	547	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
10193	ENST00000595228.4_2	ENST00000410108.5_3	chr11	193077	194575	SCGB1C2	+	protein_coding	chr11	167783	207383	BET1L	-	protein_coding	1498	opposite	12006_ID	chr11	193078	194575	1498	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
10199	ENST00000595500.1_3	ENST00000309244.9_4	chr19	51864965	51868798	AC008750.4	-	lncRNA	chr19	51848422	51869642	ETFB	-	protein_coding	3833	same	799_ID	chr19	51864966	51868798	3833	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10203	ENST00000595680.1_3	ENST00000651184.1_3	chr19	44298460	44299810	AC115522.1	-	lncRNA	chr19	44290025	44324837	LYPD5	-	nonsense_mediated_decay	1350	same	3887_ID	chr19	44298461	44299810	1350	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
10208	ENST00000595809.1_3	ENST00000653533.1_1	chr2	145635300	145639600	LINC01966	-	lncRNA	chr2	145425340	145940216	TEX41	+	lncRNA	4300	opposite	7707_ID	chr2	145635301	145639600	4300	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
10231	ENST00000596418.1_3	ENST00000233154.9_2	chr2	106462989	106471696	AC010978.1	-	lncRNA	chr2	106361368	106510728	NCK2	+	protein_coding	10644	opposite	1169_ID	chr2	106462990	106471696	8707	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
10236	ENST00000596535.3_6	ENST00000472595.5_1	chrX	72001688	72002484	FAM236B	-	protein_coding	chrX	71996832	72068636	DMRTC1B	+	nonsense_mediated_decay	796	opposite	6975_ID	chrX	72001689	72002484	796	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10250	ENST00000596816.1_3	ENST00000595505.5_6	chr19	16750777	16751479	AC024075.1	-	lncRNA	chr19	16688460	16770926	AC008764.4	-	nonsense_mediated_decay	702	same	1993_ID	chr19	16750778	16751479	702	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
10276	ENST00000597411.1_3	ENST00000539106.5_2	chr19	18668584	18672370	AC005253.1	-	lncRNA	chr19	18668571	18680197	KXD1	+	protein_coding	3786	opposite	261_ID	chr19	18668585	18672370	3786	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
10280	ENST00000597592.1_1	ENST00000252590.9_4	chr19	17471740	17473562	AC010463.2	+	lncRNA	chr19	17462263	17488151	PLVAP	-	protein_coding	1822	opposite	1080_ID	chr19	17471741	17473562	1822	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
10298	ENST00000598112.2_1	ENST00000595505.5_6	chr19	16744607	16746080	AC024075.2	-	lncRNA	chr19	16688460	16770926	AC008764.4	-	nonsense_mediated_decay	1473	same	1999_ID	chr19	16744608	16746080	1473	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
10313	ENST00000598409.6_2	ENST00000650950.1_1	chr19	57154526	57168615	SMIM17	+	protein_coding	chr19	57106680	57310970	ZIM2-AS1	+	lncRNA	14089	same	12127_ID	chr19	57154527	57168615	14089	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
10314	ENST00000598523.3_3	ENST00000671457.1_3	chrX	151806348	151826007	GABRQ	+	protein_coding	chrX	151743148	151867178	AC244102.4	-	lncRNA	19659	opposite	7099_ID	chrX	151806349	151826007	19659	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
10345	ENST00000599486.1_1	ENST00000597373.2_5	chr16	86320032	86326995	LINC02135	+	lncRNA	chr16	86259185	86334909	LINC01081	-	lncRNA	6963	opposite	7733_ID	chr16	86320033	86326995	6963	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10386	ENST00000600936.1_1	ENST00000557752.1_1	chr14	77607025	77609339	AC007375.3	+	lncRNA	chr14	77564653	77691805	AC007375.2	+	nonsense_mediated_decay	2314	same	555_ID	chr14	77607026	77609339	2314	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
10413	ENST00000601508.1_1	ENST00000651166.1_1	chr2	220362332	220362968	AC053503.4	-	lncRNA	chr2	220360846	220363009	SPEGNB	+	protein_coding	636	opposite	2322_ID	chr2	220362333	220362968	636	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	5
10454	ENST00000602435.1_1	ENST00000374728.7_1	chr10	35499343	35499678	AL117336.1	+	lncRNA	chr10	35416384	35501883	CREM	+	protein_coding	335	same	4724_ID	chr10	35499344	35499678	335	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
10459	ENST00000602455.1_1	ENST00000652102.1_1	chrX	49129516	49132231	AC232271.1	+	lncRNA	chrX	49126676	49157879	PPP1R3F	+	nonsense_mediated_decay	2715	same	4253_ID	chrX	49129517	49132231	2715	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10463	ENST00000602508.1_1	ENST00000472595.5_1	chrX	71997431	71998921	FAM226B	+	lncRNA	chrX	71996832	72068636	DMRTC1B	+	nonsense_mediated_decay	1490	same	6973_ID	chrX	71997432	71998921	1490	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10491	ENST00000602736.1_1	ENST00000446825.1_4	chr2	20786007	20786446	AC012065.2	-	lncRNA	chr2	20760207	20850842	HS1BP3	-	protein_coding	439	same	1324_ID	chr2	20786008	20786446	439	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
10503	ENST00000602802.1_1	ENST00000548851.5_2	chr12	58197620	58198198	AC025165.5	+	lncRNA	chr12	58176569	58201854	TSFM	+	protein_coding	578	same	2058_ID	chr12	58197621	58198198	578	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
10509	ENST00000602838.1_1	ENST00000675058.1_1	chr16	28465461	28465832	AC138894.2	-	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	371	opposite	4195_ID	chr16	28465462	28465832	371	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10537	ENST00000602979.1_1	ENST00000641618.1_4	chr8	12333970	12334631	AC130352.1	+	lncRNA	chr8	12325201	12465169	AC068587.4	-	lncRNA	50380	opposite	4060_ID	chr8	12333971	12334631	661	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
10608	ENST00000604845.1_1	ENST00000358788.10_1	chr2	75887587	75889334	AC005034.3	+	lncRNA	chr2	75873919	75917885	MRPL19	+	protein_coding	1747	same	219_ID	chr2	75887588	75889334	1747	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
10663	ENST00000606037.1_1	ENST00000297313.8_5	chr8	54788709	54789209	AC113194.1	-	lncRNA	chr8	54764354	54871863	RGS20	+	protein_coding	500	opposite	3844_ID	chr8	54788710	54789209	500	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10664	ENST00000606056.1_1	ENST00000514218.5_6	chr5	42806495	42807099	AC008945.1	+	lncRNA	chr5	42801035	42887494	SELENOP	-	protein_coding	604	opposite	835_ID	chr5	42806496	42807099	604	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
10688	ENST00000606234.1	ENST00000664466.1_1	chr4	105412032	105412111	AC093628.1	+	miRNA	chr4	105412005	105568798	CXXC4-AS1	+	lncRNA	79	same	3230_ID	chr4	105412033	105412111	79	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	5
10695	ENST00000606330.1_1	ENST00000623028.1_3	chr3	11653075	11653671	AC022001.3	+	lncRNA	chr3	11643383	11812824	VGLL4	-	protein_coding	596	opposite	1811_ID	chr3	11653076	11653671	596	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
10710	ENST00000606479.1	ENST00000653211.1_1	chr6	28615973	28616042	AL121932.1	-	miRNA	chr6	28603345	28617315	AL121932.2	+	lncRNA	69	opposite	4779_ID	chr6	28615974	28616042	69	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	5	5
10714	ENST00000606526.1	ENST00000526895.5_3	chr11	17096200	17096291	SNORD14A	-	snoRNA	chr11	17095935	17099253	RPS13	-	processed_transcript	91	same	12372_ID	chr11	17096201	17096291	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
10722	ENST00000606577.1	ENST00000507000.5_4	chr5	180668813	180668892	SNORD96A	-	snoRNA	chr5	180665169	180675096	RACK1	-	protein_coding	79	same	12466_ID	chr5	180668814	180668892	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
10729	ENST00000606638.1	ENST00000417201.4_4	chr9	125018211	125018309	AL162424.2	+	miRNA	chr9	124999900	125027119	RBM18	-	protein_coding	98	opposite	5198_ID	chr9	125018212	125018309	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
10788	ENST00000607263.1	ENST00000526761.5_6	chr11	77306155	77306224	AP002789.1	-	miRNA	chr11	77225980	77330740	CLNS1A	-	nonsense_mediated_decay	69	same	6204_ID	chr11	77306156	77306224	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
10790	ENST00000607269.1_1	ENST00000606429.5_1	chr13	79170263	79173754	AL445209.1	+	lncRNA	chr13	78628989	79191460	OBI1-AS1	+	lncRNA	3491	same	5616_ID	chr13	79170264	79173754	3491	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
10800	ENST00000607315.1_2	ENST00000520739.5_1	chr8	30013345	30013748	AC026979.2	-	lncRNA	chr8	29953002	30034724	LEPROTL1	+	nonsense_mediated_decay	403	opposite	2182_ID	chr8	30013346	30013748	403	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
10810	ENST00000607405.1_1	ENST00000436290.2_3	chr13	88260161	88261489	AL355578.1	-	lncRNA	chr13	88096241	88323218	MIR4500HG	-	lncRNA	1328	same	5348_ID	chr13	88260162	88261489	1328	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10822	ENST00000607496.1_1	ENST00000575858.5_3	chr17	9456639	9459013	AC087501.4	-	lncRNA	chr17	9153788	9479152	STX8	-	nonsense_mediated_decay	2374	same	2829_ID	chr17	9456640	9459013	2374	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
10841	ENST00000607691.1_1	ENST00000501071.2_3	chr5	8445061	8445648	AC091965.4	-	lncRNA	chr5	8333593	8457671	LINC02226	-	lncRNA	587	same	3023_ID	chr5	8445062	8445648	587	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
10845	ENST00000607698.1_1	ENST00000473314.6_3	chr1	25574327	25574812	AL031432.3	+	lncRNA	chr1	25568746	25664656	RSRP1	-	nonsense_mediated_decay	485	opposite	4521_ID	chr1	25574328	25574812	485	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10851	ENST00000607744.1_1	ENST00000461672.5_3	chr3	37223597	37224225	AC126118.1	+	lncRNA	chr3	37162954	37225180	LRRFIP2	-	retained_intron	628	opposite	4021_ID	chr3	37223598	37224225	628	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10858	ENST00000607849.1_1	ENST00000623028.1_3	chr3	11648657	11652222	AC022001.2	+	lncRNA	chr3	11643383	11812824	VGLL4	-	protein_coding	3565	opposite	1810_ID	chr3	11648658	11652222	3565	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
10862	ENST00000607869.1	ENST00000509104.5_2	chr5	32781643	32781745	AC026703.2	+	miRNA	chr5	32689175	32783134	NPR3	+	protein_coding	102	same	2164_ID	chr5	32781644	32781745	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
10900	ENST00000608229.1_1	ENST00000444384.3_3	chr10	81727968	81732969	SFTPD-AS1	+	lncRNA	chr10	81701204	81742370	SFTPD	-	protein_coding	5001	opposite	12049_ID	chr10	81727969	81732969	5001	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
10912	ENST00000608357.1_1	ENST00000369686.9_1	chr1	113060420	113061063	AL354760.1	-	lncRNA	chr1	113010055	113072787	WNT2B	+	protein_coding	643	opposite	5282_ID	chr1	113060421	113061063	643	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
10919	ENST00000608410.1_1	ENST00000429340.1_1	chr21	27832221	27832533	AP001596.2	-	lncRNA	chr21	27750870	27843421	AP001596.1	+	lncRNA	312	opposite	6147_ID	chr21	27832222	27832533	312	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
11021	ENST00000609664.2_4	ENST00000622352.3_4	chr21	46020496	46022091	KRTAP10-7	+	protein_coding	chr21	45993600	46058201	KRTAP10-4	+	protein_coding	1595	same	7485_ID	chr21	46020497	46022091	1595	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
11038	ENST00000609813.1_1	ENST00000675515.1_1	chr7	5596361	5596876	AC006483.2	+	lncRNA	chr7	5566782	5603533	ACTB	-	protein_coding	515	opposite	470_ID	chr7	5596362	5596876	515	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11042	ENST00000609898.1_1	ENST00000669460.1_3	chr10	45454364	45454906	AL353801.3	-	lncRNA	chr10	45289031	45455157	TMEM72-AS1	-	lncRNA	542	same	5267_ID	chr10	45454365	45454906	542	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11047	ENST00000609924.1_1	ENST00000580139.1_1	chr18	3246398	3247084	AP005329.3	-	lncRNA	chr18	3190394	3247275	AP005329.2	+	lncRNA	686	opposite	6299_ID	chr18	3246399	3247084	686	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	5	5
11058	ENST00000609976.1_1	ENST00000619227.4_3	chr22	38346971	38347785	AL031587.3	+	lncRNA	chr22	38339056	38349676	C22orf23	-	protein_coding	814	opposite	4523_ID	chr22	38346972	38347785	814	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
11096	ENST00000610375.1_1	ENST00000257818.3_4	chr11	33902188	33903346	AC132216.1	+	lncRNA	chr11	33880121	33913623	LMO2	-	protein_coding	1158	opposite	4099_ID	chr11	33902189	33903346	1158	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
11107	ENST00000610598.4_3	ENST00000420087.2	chrX	134945963	134953982	CT45A7	-	protein_coding	chrX	134928696	134953994	CT45A4	-	protein_coding	8019	same	6726_ID	chrX	134945964	134953982	8019	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	5
11112	ENST00000610699.1_1	ENST00000433346.5_1	chr12	7008915	7009376	U47924.3	+	lncRNA	chr12	6982732	7016897	LRRC23	+	protein_coding	461	same	12829_ID	chr12	7008916	7009376	461	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
11120	ENST00000610940.4_3	ENST00000638240.1_1	chr22	18900289	18924066	PRODH	-	protein_coding	chr22	18893750	18935245	AC007326.4	+	protein_coding	23777	opposite	9647_ID	chr22	18900290	18924066	23777	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
11123	ENST00000610993.1_1	ENST00000560827.5_5	chr15	56540984	56541325	AC068726.1	+	lncRNA	chr15	56536206	56683583	TEX9	+	protein_coding	341	same	2439_ID	chr15	56540985	56541325	341	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11128	ENST00000611191.1_1	ENST00000342745.5_2	chr14	70083838	70084365	AL133445.2	+	lncRNA	chr14	70078312	70181861	SUSD6	+	protein_coding	527	same	4858_ID	chr14	70083839	70084365	527	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11129	ENST00000611214.1_1	ENST00000563262.5_5	chr15	55581046	55581544	AC018926.2	-	lncRNA	chr15	55520863	55611311	RAB27A	-	protein_coding	498	same	1675_ID	chr15	55581047	55581544	498	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
11150	ENST00000611668.4_3	ENST00000420087.2	chrX	134947434	134953875	CT45A10	-	protein_coding	chrX	134928696	134953994	CT45A4	-	protein_coding	6441	same	6725_ID	chrX	134947435	134953875	6441	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
11158	ENST00000611915.2_4	ENST00000640575.2_2	chr2	103489641	103512203	LINC01796	-	lncRNA	chr2	103378421	103636358	TMEM182	+	protein_coding	22597	opposite	7679_ID	chr2	103489642	103512203	22562	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
11160	ENST00000612008.1_1	ENST00000643056.1_3	chr10	131902832	131903262	AL139123.1	-	lncRNA	chr10	131818288	131909074	C10orf143	-	nonsense_mediated_decay	430	same	5010_ID	chr10	131902833	131903262	430	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11168	ENST00000612308.2_3	ENST00000653087.1_1	chr9	44990764	44991061	AL627230.1	-	protein_coding	chr9	44990308	45212569	FAM27C	+	lncRNA	297	opposite	5848_ID	chr9	44990765	44991061	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11183	ENST00000612734.1_1	ENST00000256078.10_6	chr12	25363585	25364167	AC092794.1	+	lncRNA	chr12	25358179	25403863	KRAS	-	protein_coding	582	opposite	3147_ID	chr12	25363586	25364167	582	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
11190	ENST00000612824.1_1	ENST00000567873.1_3	chr13	33910352	33910853	AL138999.1	-	lncRNA	chr13	33701566	33924767	STARD13	-	protein_coding	757	same	4992_ID	chr13	33910353	33910853	501	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11191	ENST00000612824.1_1	ENST00000648376.1_1	chr13	33910352	33910853	AL138999.1	-	lncRNA	chr13	33909633	33923756	AL138999.2	+	lncRNA	757	opposite	4993_ID	chr13	33910353	33910853	501	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11193	ENST00000612891.4_3	ENST00000517883.2_5	chr2	74641302	74648687	C2orf81	-	protein_coding	chr2	74620962	74648789	AC005041.1	-	nonsense_mediated_decay	7416	same	6510_ID	chr2	74641303	74648687	7385	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
11199	ENST00000612995.1_1	ENST00000567695.6_4	chr16	4582216	4583671	AC023830.3	-	lncRNA	chr16	4560669	4588774	CDIP1	-	protein_coding	1455	same	1979_ID	chr16	4582217	4583671	1455	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11220	ENST00000613454.1_2	ENST00000675058.1_1	chr16	28565029	28565461	AC020765.2	-	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	432	opposite	1734_ID	chr16	28565030	28565461	432	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11260	ENST00000614406.1_1	ENST00000368636.8_4	chr10	133784705	133785037	AL162274.2	+	lncRNA	chr10	133779958	133795517	BNIP3	-	protein_coding	332	opposite	5188_ID	chr10	133784706	133785037	332	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
11266	ENST00000614562.1_1	ENST00000547799.5_1	chr12	48125690	48126134	AC004241.2	+	lncRNA	chr12	48099867	48136077	AC004241.1	+	lncRNA	444	same	117_ID	chr12	48125691	48126134	444	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
11280	ENST00000614819.1_1	ENST00000675058.1_1	chr16	28833751	28835290	AC145285.6	-	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	1539	opposite	4238_ID	chr16	28833752	28835290	1539	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11323	ENST00000615958.4_3	ENST00000648191.1_1	chr10	25270908	25351208	ENKUR	-	protein_coding	chr10	25241278	25450165	AL512598.2	+	lncRNA	80301	opposite	6907_ID	chr10	25270909	25351208	80300	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
11339	ENST00000616257.1_3	ENST00000606888.3_3	chr1	145470667	145473700	AC243547.2	-	lncRNA	chr1	145470514	145475647	ANKRD34A	+	protein_coding	3033	opposite	4276_ID	chr1	145470668	145473700	3033	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
11370	ENST00000616957.1_1	ENST00000544732.5_3	chr12	22257424	22258254	AC007671.1	-	lncRNA	chr12	22219352	22403721	ST8SIA1	-	processed_transcript	830	same	630_ID	chr12	22257425	22258254	830	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
11381	ENST00000617191.1_1	ENST00000368636.8_4	chr10	133793743	133794841	AL162274.1	+	lncRNA	chr10	133779958	133795517	BNIP3	-	protein_coding	1098	opposite	5187_ID	chr10	133793744	133794841	1098	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11415	ENST00000618151.1_1	ENST00000467721.5_3	chr13	50699951	50702599	AL137060.3	+	lncRNA	chr13	50656306	51102670	DLEU1	+	lncRNA	2648	same	4937_ID	chr13	50699952	50702599	2648	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
11449	ENST00000619201.1_1	ENST00000613522.1_3	chr20	5981063	5981587	AL035461.2	+	lncRNA	chr20	5971588	5986467	MCM8-AS1	-	lncRNA	524	opposite	4611_ID	chr20	5981064	5981587	524	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
11465	ENST00000619602.1_1	ENST00000546995.5_1	chr12	56322953	56323513	AC025162.2	+	lncRNA	chr12	56322038	56332376	DGKA	+	retained_intron	560	same	2054_ID	chr12	56322954	56323513	560	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11493	ENST00000620001.1_1	ENST00000624272.3_1	chr5	134370210	134371584	AC008406.3	+	lncRNA	chr5	134368969	134680375	C5orf66	+	lncRNA	1374	same	726_ID	chr5	134370211	134371584	1374	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11507	ENST00000620208.1_1	ENST00000559824.5_1	chr15	60885225	60885659	AC009560.1	+	lncRNA	chr15	60771376	60922836	RORA-AS1	+	lncRNA	434	same	977_ID	chr15	60885226	60885659	434	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
11525	ENST00000620532.1_1	ENST00000596831.1_3	chr19	57961056	57964379	AC004076.2	+	lncRNA	chr19	57949337	57988871	AC004076.1	-	protein_coding	3323	opposite	97_ID	chr19	57961057	57964379	3323	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
11529	ENST00000620704.5_4	ENST00000491002.2	chrX	134962854	134971127	CT45A9	-	protein_coding	chrX	134962848	134971244	CT45A6	-	protein_coding	8273	same	6727_ID	chrX	134962855	134971127	8273	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	5
11530	ENST00000620744.1_1	ENST00000217740.4_2	chr18	29610997	29611322	AC009831.3	+	lncRNA	chr18	29598787	29653182	RNF125	+	protein_coding	325	same	998_ID	chr18	29610998	29611322	325	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11541	ENST00000620963.1_3	ENST00000675058.1_1	chr16	29236914	29237669	AC009093.5	-	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	755	opposite	870_ID	chr16	29236915	29237669	755	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11543	ENST00000621046.2_1	ENST00000592806.1_2	chr19	28293745	28294380	AC006504.7	+	lncRNA	chr19	28284395	28475892	AC006504.5	+	lncRNA	635	same	473_ID	chr19	28293746	28294380	635	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11550	ENST00000621254.1_1	ENST00000337318.8_5	chr10	126311921	126312648	AL513190.1	+	lncRNA	chr10	126307860	126432947	FAM53B	-	protein_coding	727	opposite	5705_ID	chr10	126311922	126312648	727	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	5
11556	ENST00000621401.4_5	ENST00000615007.4_4	chr8	143852614	143859226	LYNX1	-	protein_coding	chr8	143845755	143859640	LYNX1-SLURP2	-	protein_coding	6612	same	7892_ID	chr8	143852615	143859226	6612	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
11563	ENST00000621449.1_1	ENST00000620217.4_3	chr13	113993764	113994273	AL136221.1	-	lncRNA	chr13	113978478	114018463	GRTP1	-	protein_coding	509	same	4894_ID	chr13	113993765	113994273	509	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
11579	ENST00000621809.1_1	ENST00000376649.8_3	chr12	132419186	132419473	AC131009.3	+	lncRNA	chr12	132413820	132430441	PUS1	+	protein_coding	287	same	4079_ID	chr12	132419187	132419473	287	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
11583	ENST00000621827.1_1	ENST00000234798.4_3	chr16	1273638	1274143	AC120498.10	+	lncRNA	chr16	1271650	1275257	TPSG1	-	protein_coding	505	opposite	3962_ID	chr16	1273639	1274143	505	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
11608	ENST00000622261.1_1	ENST00000220325.9_4	chr15	42200401	42200912	AC039056.2	-	lncRNA	chr15	42188130	42264755	EHD4	-	protein_coding	511	same	2288_ID	chr15	42200402	42200912	511	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
11610	ENST00000622268.1_1	ENST00000675058.1_1	chr16	29283540	29284093	AC009093.6	+	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	553	same	873_ID	chr16	29283541	29284093	553	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11623	ENST00000622561.4_1	ENST00000473314.6_3	chr1	25598976	25656936	RHD	+	protein_coding	chr1	25568746	25664656	RSRP1	-	nonsense_mediated_decay	58053	opposite	9746_ID	chr1	25598977	25656936	57960	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11697	ENST00000624527.3_4	ENST00000649361.1_1	chr6	2622146	2634853	LINC01600	-	lncRNA	chr6	2617377	2637689	LINC02521	+	lncRNA	12707	opposite	7658_ID	chr6	2622147	2634853	12707	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
11703	ENST00000624810.3_1	ENST00000644251.1_1	chr21	45554006	45602558	GATD3B	+	protein_coding	chr21	45553491	45622947	GATD3A	+	protein_coding	49038	same	7108_ID	chr21	45554007	45602558	48552	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
11734	ENST00000626109.1_1	ENST00000433082.6_3	chr1	214098091	214099997	LINC00538	-	lncRNA	chr1	213991093	214161725	PROX1-AS1	-	lncRNA	1906	same	7562_ID	chr1	214098092	214099997	1906	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
11742	ENST00000626308.1_2	ENST00000642146.1_1	chr13	100150990	100153504	AL139035.1	+	lncRNA	chr13	100098564	100153899	TM9SF2	+	protein_coding	2514	same	5000_ID	chr13	100150991	100153504	2514	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
11759	ENST00000628131.2_3	ENST00000567873.1_3	chr13	33754537	33855375	STARD13-AS	+	lncRNA	chr13	33701566	33924767	STARD13	-	protein_coding	101184	opposite	12563_ID	chr13	33754538	33855375	100838	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11763	ENST00000628479.2_3	ENST00000470165.1_1	chr10	103338640	103348027	POLL	-	protein_coding	chr10	103330316	103356408	DPCD	+	processed_transcript	9389	opposite	9595_ID	chr10	103338641	103348027	9387	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
11782	ENST00000629810.1_5	ENST00000636867.1_2	chr1	53675454	53679144	AL606760.2	-	lncRNA	chr1	53662463	53679850	CPT2	+	protein_coding	3993	opposite	5841_ID	chr1	53675455	53679144	3690	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
11786	ENST00000629999.3_2	ENST00000593484.1_3	chr19	19030513	19039998	DDX49	+	nonsense_mediated_decay	chr19	19017821	19045206	AC002985.1	-	nonsense_mediated_decay	9485	opposite	6784_ID	chr19	19030514	19039998	9485	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
11794	ENST00000630751.2_2	ENST00000362077.4_1	chr21	35530023	35561218	LINC00310	+	lncRNA	chr21	35445891	35732332	AP000317.2	+	lncRNA	32522	same	7540_ID	chr21	35530024	35561218	31195	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
11836	ENST00000635215.1_1	ENST00000399363.4_4	chr17	9708759	9714364	AC027045.3	+	lncRNA	chr17	9705702	9725388	GSG1L2	-	protein_coding	5605	opposite	2188_ID	chr17	9708760	9714364	5605	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
11852	ENST00000635887.1_4	ENST00000675058.1_1	chr16	28467691	28503362	AC138894.1	-	nonsense_mediated_decay	chr16	28352754	29381593	AC009093.11	+	lncRNA	35728	opposite	4194_ID	chr16	28467692	28503362	35671	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11859	ENST00000636267.1_4	ENST00000622727.4_3	chrX	72132452	72133238	FAM236C	+	protein_coding	chrX	72091858	72163643	DMRTC1	-	nonsense_mediated_decay	786	opposite	6976_ID	chrX	72132453	72133238	786	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11862	ENST00000636467.2_2	ENST00000585822.1_3	chr18	37421705	37476262	LINC01902	+	lncRNA	chr18	37421137	37504804	LINC01901	-	lncRNA	54590	opposite	7696_ID	chr18	37421706	37476262	54557	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
11866	ENST00000636696.4_4	ENST00000575310.1_1	chr17	7332175	7336139	SPEM3	+	protein_coding	chr17	7323421	7347400	AC113189.2	+	lncRNA	3964	same	12527_ID	chr17	7332176	7336139	3964	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
11891	ENST00000637973.1_2	ENST00000481726.1_1	chr18	61633639	61637415	AC009802.1	-	lncRNA	chr18	61616590	61649008	HMSD	+	processed_transcript	3776	opposite	997_ID	chr18	61633640	61637415	3776	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
11902	ENST00000639479.1_1	ENST00000308234.11_1	chr5	98128564	98131470	AC008522.1	-	lncRNA	chr5	98104998	98132198	RGMB	+	protein_coding	2906	opposite	737_ID	chr5	98128565	98131470	2906	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	5	5
11920	ENST00000641100.1_3	ENST00000641354.1_1	chr1	8058246	8059994	AL034417.3	-	lncRNA	chr1	8051193	8065372	AL034417.4	+	lncRNA	1748	opposite	4586_ID	chr1	8058247	8059994	1748	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
11923	ENST00000641167.1_4	ENST00000527565.1_3	chr11	7846364	7852387	OR5P3	-	protein_coding	chr11	7726174	7904494	AC044810.3	-	lncRNA	6023	same	9465_ID	chr11	7846365	7852387	6023	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
11943	ENST00000641559.1_2	ENST00000465654.5_1	chr7	141616198	141620425	OR9A4	+	protein_coding	chr7	141607612	141720880	MGAM	+	protein_coding	4227	same	9474_ID	chr7	141616199	141620425	4227	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11966	ENST00000641956.1_1	ENST00000675058.1_1	chr16	29150699	29342625	AC009093.10	+	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	191926	same	865_ID	chr16	29150700	29342625	191926	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11977	ENST00000642586.1_1	ENST00000642829.1_5	chr6	159515124	159537286	AL356417.1	+	lncRNA	chr6	159472705	159542527	AL356417.3	-	lncRNA	22162	opposite	5386_ID	chr6	159515125	159537286	22162	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
12005	ENST00000646480.1_1	ENST00000646441.1_3	chr13	107144495	107173978	AL138689.2	+	lncRNA	chr13	107142092	107188010	EFNB2	-	protein_coding	30484	opposite	4966_ID	chr13	107144496	107173978	29483	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	5
12031	ENST00000647963.1_3	ENST00000366889.6_1	chr6	163390081	163396039	AL590286.2	-	lncRNA	chr6	163148163	163736524	PACRG	+	protein_coding	5958	opposite	5757_ID	chr6	163390082	163396039	5958	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12032	ENST00000647982.1_3	ENST00000519570.5_1	chr5	164556312	164580020	AC091973.1	-	lncRNA	chr5	163723983	164598649	AC109466.1	+	lncRNA	23708	opposite	3025_ID	chr5	164556313	164580020	23708	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
12034	ENST00000648024.1_1	ENST00000469361.5_3	chr14	39617036	39620567	AL109628.2	+	lncRNA	chr14	39617014	39639736	TRAPPC6B	-	retained_intron	3531	opposite	4698_ID	chr14	39617037	39620567	3531	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	5
12054	ENST00000648308.1_3	ENST00000396582.6_2	chr14	32618381	32627214	AL161665.1	-	lncRNA	chr14	32546279	32628934	ARHGAP5	+	protein_coding	8833	opposite	5156_ID	chr14	32618382	32627214	8833	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	5
12060	ENST00000648351.1_3	ENST00000317173.9_4	chr8	10133008	10137247	AC079200.1	-	lncRNA	chr8	9911801	10286401	MSRA	+	protein_coding	4239	opposite	2627_ID	chr8	10133009	10137247	4239	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12062	ENST00000648376.1_1	ENST00000567873.1_3	chr13	33909633	33923756	AL138999.2	+	lncRNA	chr13	33701566	33924767	STARD13	-	protein_coding	14123	opposite	4994_ID	chr13	33909634	33923756	14123	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12068	ENST00000648443.1_1	ENST00000524717.6_4	chr11	95825537	95870991	AP000779.1	+	lncRNA	chr11	95709761	96076359	MAML2	-	protein_coding	45454	opposite	6027_ID	chr11	95825538	95870991	45454	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
12080	ENST00000648584.1_3	ENST00000366889.6_1	chr6	163536722	163558807	AL137182.1	-	lncRNA	chr6	163148163	163736524	PACRG	+	protein_coding	22085	opposite	4944_ID	chr6	163536723	163558807	22085	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
12096	ENST00000648747.1_3	ENST00000435237.1_1	chr2	21830336	21860069	AC009411.2	-	lncRNA	chr2	21444046	22193831	AC018742.1	+	lncRNA	29733	opposite	958_ID	chr2	21830337	21860069	29733	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12107	ENST00000648956.1_1	ENST00000377263.6_4	chr1	9960671	9968092	AL357140.4	+	lncRNA	chr1	9908333	9970327	CTNNBIP1	-	protein_coding	7421	opposite	5421_ID	chr1	9960672	9968092	7421	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12136	ENST00000649481.1_3	ENST00000317173.9_4	chr8	9975514	10004933	AC023385.1	-	lncRNA	chr8	9911801	10286401	MSRA	+	protein_coding	59503	opposite	1945_ID	chr8	9975515	10004933	29419	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12164	ENST00000650148.1_1	ENST00000642740.1_1	chr15	62153307	62186363	AC009554.2	+	lncRNA	chr15	62126880	62227937	AC009554.1	+	lncRNA	33056	same	973_ID	chr15	62153308	62186363	33056	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
12187	ENST00000650621.1_1	ENST00000668734.1_3	chr1	73258786	73320158	LINC02797	+	lncRNA	chr1	73102229	73364659	AL583808.1	-	lncRNA	61372	opposite	7801_ID	chr1	73258787	73320158	61372	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
12202	ENST00000650958.1_3	ENST00000428675.6_2	chr2	198682146	198701050	AC011997.2	-	lncRNA	chr2	198669316	199014587	PLCL1	+	protein_coding	18904	opposite	1317_ID	chr2	198682147	198701050	18904	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12213	ENST00000651114.1_3	ENST00000509663.2_2	chr5	61643110	61699756	DIMT1	-	nonsense_mediated_decay	chr5	61602032	61833076	AC114982.2	+	nonsense_mediated_decay	56656	opposite	6802_ID	chr5	61643111	61699756	56646	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12223	ENST00000651314.1_1	ENST00000575310.1_1	chr17	7332179	7339597	AC113189.12	+	nonsense_mediated_decay	chr17	7323421	7347400	AC113189.2	+	lncRNA	7418	same	3841_ID	chr17	7332180	7339597	7418	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12234	ENST00000651604.1_3	ENST00000675058.1_1	chr16	28964136	28977757	AC109460.2	-	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	14068	opposite	3761_ID	chr16	28964137	28977757	13621	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12246	ENST00000651902.1_2	ENST00000490856.5_3	chr7	106065723	106151990	AC005050.3	+	lncRNA	chr7	106012696	106372895	AC004917.1	-	lncRNA	86267	opposite	231_ID	chr7	106065724	106151990	86267	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
12253	ENST00000652118.1_3	ENST00000467721.5_3	chr13	50946923	50961294	AL158195.1	-	lncRNA	chr13	50656306	51102670	DLEU1	+	lncRNA	14371	opposite	5108_ID	chr13	50946924	50961294	14371	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
12256	ENST00000652162.1_3	ENST00000498382.5_1	chr1	224890973	224900551	AL596330.1	-	lncRNA	chr1	224716892	224927323	CNIH3	+	processed_transcript	19270	opposite	5828_ID	chr1	224890974	224900551	9578	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12270	ENST00000652402.1_3	ENST00000421604.1_1	chr21	24479249	24492225	AP001255.1	-	lncRNA	chr21	24437812	24503528	AP001116.1	+	lncRNA	12976	opposite	6111_ID	chr21	24479250	24492225	12976	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
12275	ENST00000652498.1_1	ENST00000451762.4_3	chr4	85891332	85891883	AC108021.1	+	lncRNA	chr4	85887378	85932430	WDFY3-AS2	+	lncRNA	551	same	3712_ID	chr4	85891333	85891883	551	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
12357	ENST00000654549.1_3	ENST00000537280.2_4	chr12	132128716	132130196	AC117500.6	+	lncRNA	chr12	132123940	132146368	LINC02414	-	lncRNA	1480	opposite	3936_ID	chr12	132128717	132130196	1480	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
12361	ENST00000654725.1_3	ENST00000650059.1_1	chr14	97216031	97221893	AL137786.3	-	lncRNA	chr14	97204357	97256974	LINC02299	+	lncRNA	5862	opposite	4955_ID	chr14	97216032	97221893	5862	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
12366	ENST00000654841.1_3	ENST00000399848.7_2	chr18	13276425	13277154	AP002505.3	-	lncRNA	chr18	13218785	13652754	LDLRAD4	+	protein_coding	729	opposite	6193_ID	chr18	13276426	13277154	729	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12370	ENST00000654897.1_1	ENST00000549503.1_5	chr14	30397650	30401962	AL355053.1	+	lncRNA	chr14	30133017	30661104	PRKD1	-	protein_coding	4312	opposite	5311_ID	chr14	30397651	30401962	4312	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12377	ENST00000655063.1_3	ENST00000658207.1_1	chr6	729127	760936	AL357054.5	-	lncRNA	chr6	692529	796781	AL357054.2	+	lncRNA	31809	opposite	5411_ID	chr6	729128	760936	31809	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
12382	ENST00000655122.1_1	ENST00000666525.1_3	chr5	33009039	33026131	AC034223.1	+	lncRNA	chr5	32888341	33049509	AC010343.3	-	lncRNA	17092	opposite	2259_ID	chr5	33009040	33026131	17092	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
12401	ENST00000655466.1_1	ENST00000648809.1_1	chr5	6868666	6888200	AC122710.1	+	lncRNA	chr5	6839572	7180380	LINC02196	+	lncRNA	19534	same	3984_ID	chr5	6868667	6888200	19534	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12402	ENST00000655474.1_1	ENST00000663636.1_3	chr2	8077412	8093533	AC007463.2	+	lncRNA	chr2	8063744	8418316	LINC00298	-	lncRNA	16121	opposite	578_ID	chr2	8077413	8093533	16121	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
12457	ENST00000656698.1_3	ENST00000502936.1_1	chr4	104471745	104480434	AC105460.1	-	lncRNA	chr4	104469901	104545691	AC105460.2	+	lncRNA	8692	opposite	3621_ID	chr4	104471746	104480434	8689	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
12474	ENST00000657029.1_1	ENST00000523191.5_4	chr8	64681985	64726494	LINC01289	+	lncRNA	chr8	64599736	65281115	LINC01414	-	lncRNA	44509	opposite	7627_ID	chr8	64681986	64726494	44509	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
12481	ENST00000657150.1_1	ENST00000554914.1_3	chr8	10586967	10630420	AC105001.1	+	lncRNA	chr8	10582908	10697357	AC105001.2	-	protein_coding	43597	opposite	3583_ID	chr8	10586968	10630420	43453	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
12484	ENST00000657182.1_3	ENST00000400384.7_2	chr18	48173684	48177582	AC012433.2	-	lncRNA	chr18	48086456	48258196	MAPK4	+	protein_coding	3898	opposite	1383_ID	chr18	48173685	48177582	3898	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12489	ENST00000657233.1_1	ENST00000656336.1_1	chr14	27342297	27387800	MIR4307HG	+	lncRNA	chr14	27068960	27764722	AL110292.1	+	lncRNA	45503	same	8502_ID	chr14	27342298	27387800	45503	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
12513	ENST00000657705.1_1	ENST00000379992.6_3	chr9	28539732	28566731	AL445526.1	+	lncRNA	chr9	27948075	28670283	LINGO2	-	protein_coding	26999	opposite	5630_ID	chr9	28539733	28566731	26999	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12545	ENST00000658292.1_3	ENST00000675058.1_1	chr16	29226705	29232361	AC009093.1	-	lncRNA	chr16	28352754	29381593	AC009093.11	+	lncRNA	5656	opposite	864_ID	chr16	29226706	29232361	5656	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12565	ENST00000658605.1_1	ENST00000323944.9_3	chr14	25330377	25335184	AL161663.1	+	lncRNA	chr14	25278867	25519503	STXBP6	-	protein_coding	4807	opposite	5154_ID	chr14	25330378	25335184	4807	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
12593	ENST00000659090.1_3	ENST00000647763.1_1	chr12	58323897	58330128	GIHCG	-	lncRNA	chr12	58299821	58352931	ATP23	+	processed_transcript	6231	opposite	7117_ID	chr12	58323898	58330128	6231	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12599	ENST00000659166.1_1	ENST00000423112.2_1	chr9	3630946	3648390	AL354977.2	+	lncRNA	chr9	3526722	3671634	RFX3-AS1	+	lncRNA	17444	same	5305_ID	chr9	3630947	3648390	17444	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
12602	ENST00000659271.1_3	ENST00000656336.1_1	chr14	27300606	27342242	AL132718.1	-	lncRNA	chr14	27068960	27764722	AL110292.1	+	lncRNA	41636	opposite	4813_ID	chr14	27300607	27342242	41636	*	-	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
12629	ENST00000659736.1_1	ENST00000663636.1_3	chr2	8279482	8285080	U91324.1	+	lncRNA	chr2	8063744	8418316	LINC00298	-	lncRNA	5616	opposite	12835_ID	chr2	8279483	8285080	5598	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12633	ENST00000659972.1_1	ENST00000657463.1_1	chr8	125952282	125954151	AC100858.3	-	lncRNA	chr8	125835943	125963337	LINC00964	+	lncRNA	1869	opposite	3442_ID	chr8	125952283	125954151	1869	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
12641	ENST00000660096.1_3	ENST00000648809.1_1	chr5	7065203	7069464	AC025756.1	-	lncRNA	chr5	6839572	7180380	LINC02196	+	lncRNA	4261	opposite	2105_ID	chr5	7065204	7069464	4261	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12657	ENST00000660406.1_1	ENST00000567873.1_3	chr13	33860002	33864698	AL627232.1	+	lncRNA	chr13	33701566	33924767	STARD13	-	protein_coding	4696	opposite	5851_ID	chr13	33860003	33864698	4696	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
12690	ENST00000661117.1_3	ENST00000536633.2_2	chr8	124208775	124214583	FAM83A-AS1	-	lncRNA	chr8	124191286	124222319	FAM83A	+	protein_coding	6208	opposite	6997_ID	chr8	124208776	124214583	5808	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
12692	ENST00000661181.1_1	ENST00000609477.5_3	chr6	125589232	125595974	AL121938.1	+	lncRNA	chr6	125543073	125623104	HDDC2	-	nonsense_mediated_decay	6742	opposite	4786_ID	chr6	125589233	125595974	6742	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
12693	ENST00000661184.1_1	ENST00000652014.1_1	chr12	91202983	91204466	AC112481.1	+	lncRNA	chr12	90970271	91212080	LINC02822	+	lncRNA	1483	same	3822_ID	chr12	91202984	91204466	1483	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
12710	ENST00000661715.1_1	ENST00000671178.1_3	chr2	38635860	38639769	AC016995.1	+	lncRNA	chr2	38633668	38742782	LINC02613	-	lncRNA	3909	opposite	1580_ID	chr2	38635861	38639769	3909	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
12720	ENST00000661891.1_3	ENST00000378191.5_2	chr1	4790331	4795052	Z98886.1	-	lncRNA	chr1	4714668	4852594	AJAP1	+	protein_coding	4782	opposite	12981_ID	chr1	4790332	4795052	4721	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
12733	ENST00000662110.1_1	ENST00000557547.1_3	chr14	85860234	85886894	LINC00911	+	lncRNA	chr14	85828800	85983278	AL049775.2	-	lncRNA	26723	opposite	7582_ID	chr14	85860235	85886894	26660	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
12741	ENST00000662440.1_3	ENST00000648201.1_1	chr11	112569494	112591874	AP003100.3	-	lncRNA	chr11	112508064	112621854	AP003100.2	+	lncRNA	22380	opposite	6238_ID	chr11	112569495	112591874	22380	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
12748	ENST00000662514.1_1	ENST00000645056.1_3	chr1	88928618	88929762	AL445438.1	+	lncRNA	chr1	88151912	89006342	PKN2-AS1	-	lncRNA	1144	opposite	5624_ID	chr1	88928619	88929762	1144	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12792	ENST00000663302.1_3	ENST00000369780.8_1	chr10	105332913	105343444	AL121929.3	-	lncRNA	chr10	105253735	105352309	NEURL1	+	protein_coding	10531	opposite	4778_ID	chr10	105332914	105343444	10531	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12806	ENST00000663700.1_1	ENST00000651919.1_1	chrX	112401099	112431245	AL023877.1	+	lncRNA	chrX	112123790	112455413	AC002072.1	+	lncRNA	30146	same	4497_ID	chrX	112401100	112431245	30146	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
12812	ENST00000663880.1_1	ENST00000641494.1_4	chr1	56880610	56882809	LINC01767	+	lncRNA	chr1	56639104	56977711	AC119674.2	-	nonsense_mediated_decay	2203	opposite	7676_ID	chr1	56880611	56882809	2199	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12850	ENST00000664653.1_1	ENST00000648631.1_3	chr17	70339010	70351244	LINC02003	+	lncRNA	chr17	70286231	70588943	LINC00511	-	lncRNA	12445	opposite	7712_ID	chr17	70339011	70351244	12234	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
12856	ENST00000664739.1_1	ENST00000430124.7_7	chr6	33767918	33770737	AL138889.3	+	lncRNA	chr6	33762449	33771780	MLN	-	protein_coding	2819	opposite	4981_ID	chr6	33767919	33770737	2819	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
12883	ENST00000665147.1_1	ENST00000659257.1_3	chr10	88963473	88966372	AL157893.2	+	lncRNA	chr10	88961403	89102259	NUTM2A-AS1	-	lncRNA	2899	opposite	5083_ID	chr10	88963474	88966372	2899	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	5	5
12916	ENST00000666094.1_3	ENST00000366889.6_1	chr6	163584861	163613059	PACRG-AS3	-	lncRNA	chr6	163148163	163736524	PACRG	+	protein_coding	28209	opposite	9495_ID	chr6	163584862	163613059	28198	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
12934	ENST00000666479.1_3	ENST00000517883.2_5	chr2	74642548	74643908	AC005041.4	+	lncRNA	chr2	74620962	74648789	AC005041.1	-	nonsense_mediated_decay	1360	opposite	225_ID	chr2	74642549	74643908	1360	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
12960	ENST00000666936.1_2	ENST00000655828.1_1	chr5	142112268	142117026	AC005592.2	-	lncRNA	chr5	142095793	142140563	LINC01844	+	lncRNA	4758	opposite	319_ID	chr5	142112269	142117026	4758	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
12968	ENST00000667097.1_3	ENST00000647615.1_1	chr16	86754180	86755648	LINC02189	-	lncRNA	chr16	86743727	86772067	LINC02188	+	lncRNA	1468	opposite	7745_ID	chr16	86754181	86755648	1468	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12972	ENST00000667266.2_3	ENST00000589310.2_4	chr19	15937846	15946618	LINC01764	-	lncRNA	chr19	15932660	15946664	AC004510.2	-	lncRNA	8849	same	7674_ID	chr19	15937847	15946618	8772	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
12978	ENST00000667399.1_1	ENST00000353689.8_3	chr14	20786107	20787866	AL355075.6	+	lncRNA	chr14	20779526	20801471	CCNB1IP1	-	protein_coding	1759	opposite	5315_ID	chr14	20786108	20787866	1759	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12987	ENST00000667627.1_1	ENST00000654751.1_1	chr3	34194470	34198789	AC123023.2	+	lncRNA	chr3	33998463	34428619	LINC01811	+	lncRNA	4319	same	3988_ID	chr3	34194471	34198789	4319	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12999	ENST00000667810.1_3	ENST00000559321.2_2	chr15	97815249	97862527	AC020704.1	-	lncRNA	chr15	97759041	97975316	LINC02253	+	lncRNA	47302	opposite	1729_ID	chr15	97815250	97862527	47278	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
13016	ENST00000668104.1_3	ENST00000435237.1_1	chr2	21910301	21933528	LINC01822	-	lncRNA	chr2	21444046	22193831	AC018742.1	+	lncRNA	23227	opposite	7685_ID	chr2	21910302	21933528	23227	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
13022	ENST00000668286.1_3	ENST00000519738.5_3	chr8	37373916	37378965	AC124067.2	-	lncRNA	chr8	37308280	37411701	LINC01605	-	lncRNA	5049	same	4000_ID	chr8	37373917	37378965	5049	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
13026	ENST00000668447.1_3	ENST00000650054.1_1	chr8	136989571	136992831	AC103955.1	-	lncRNA	chr8	136981608	137179223	LINC02055	+	lncRNA	3260	opposite	3491_ID	chr8	136989572	136992831	3260	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
13039	ENST00000668835.1_3	ENST00000372980.4_4	chr20	42809750	42811352	AL035447.1	+	lncRNA	chr20	42735229	42815828	JPH2	-	protein_coding	1602	opposite	4607_ID	chr20	42809751	42811352	1602	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
13041	ENST00000668846.1_1	ENST00000667296.1_1	chr8	91658647	91683157	AC106038.1	+	lncRNA	chr8	91233724	91700091	LINC00534	+	lncRNA	24510	same	3633_ID	chr8	91658648	91683157	24510	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
13067	ENST00000669239.1_3	ENST00000504050.5_3	chr4	128149673	128273534	AC093772.2	-	lncRNA	chr4	128018252	128391707	AC093772.1	-	lncRNA	123861	same	3244_ID	chr4	128149674	128273534	123861	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
13077	ENST00000669514.1_1	ENST00000508313.2_4	chr4	170842567	170844593	AC079768.2	+	lncRNA	chr4	170838911	170897055	LINC02275	-	lncRNA	2026	opposite	2675_ID	chr4	170842568	170844593	2026	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
13093	ENST00000669815.1_1	ENST00000317201.6_3	chr7	27147623	27162506	HOXA-AS2	+	lncRNA	chr7	27146630	27179838	HOXA3	-	protein_coding	26526	opposite	7250_ID	chr7	27147624	27162506	14883	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
13104	ENST00000670049.1_3	ENST00000380620.8_3	chr21	40969129	40984784	B3GALT5-AS1	-	lncRNA	chr21	40928368	41045064	B3GALT5	+	protein_coding	15764	opposite	6388_ID	chr21	40969130	40984784	15655	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
13115	ENST00000670416.1_1	ENST00000661257.1_3	chr17	26257202	26257946	AC005697.3	+	lncRNA	chr17	26255949	26318792	LINC01992	-	lncRNA	744	opposite	333_ID	chr17	26257203	26257946	744	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
13119	ENST00000670563.1_1	ENST00000656694.1_3	chr4	177796902	177829185	LINC02509	+	lncRNA	chr4	177765646	178222312	AC097518.2	-	lncRNA	32344	opposite	7779_ID	chr4	177796903	177829185	32283	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
13148	ENST00000671169.1_3	ENST00000524047.5_1	chr8	10334100	10336956	AC104964.1	-	lncRNA	chr8	10332074	10339484	LINCR-0001	+	lncRNA	2856	opposite	3574_ID	chr8	10334101	10336956	2856	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
13154	ENST00000671298.1_3	ENST00000370384.7_4	chr6	73972944	74011512	AC019205.1	+	lncRNA	chr6	73951036	74019938	KHDC1	-	protein_coding	38782	opposite	1697_ID	chr6	73972945	74011512	38568	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
13165	ENST00000671436.1_1	ENST00000652827.1_3	chr9	102293788	102345583	AL162394.1	+	lncRNA	chr9	102159268	102582203	AL359710.1	-	lncRNA	51795	opposite	5195_ID	chr9	102293789	102345583	51795	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
13174	ENST00000671592.1_3	ENST00000655276.1_1	chr14	105561381	105563282	AL512356.4	-	lncRNA	chr14	105560309	105566468	LINC02298	+	lncRNA	1901	opposite	5682_ID	chr14	105561382	105563282	1901	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
13176	ENST00000671610.1_3	ENST00000648749.1_1	chr1	56381276	56410653	LINC01753	-	lncRNA	chr1	56333926	56415791	LINC01755	+	lncRNA	29378	opposite	7671_ID	chr1	56381277	56410653	29377	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
13182	ENST00000672673.1_3	ENST00000580589.5_1	chr17	56597610	56621689	SEPTIN4	-	protein_coding	chr17	56597197	56634286	SEPTIN4-AS1	+	lncRNA	24119	opposite	12036_ID	chr17	56597611	56621689	24079	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
13199	ENST00000674533.1_1	ENST00000648200.2_2	chrX	139865742	139866531	CDR1	-	protein_coding	chrX	139791902	139875380	LINC00632	+	lncRNA	789	opposite	6607_ID	chrX	139865743	139866531	789	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	5	5
13202	ENST00000675071.1_1	ENST00000274625.6_2	chr5	170847019	170863176	AC093246.1	+	protein_coding	chr5	170846650	170884630	FGF18	+	protein_coding	16157	same	3188_ID	chr5	170847020	170863176	16157	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
13224	ENST00000679262.1_1	ENST00000675058.1_1	chr16	28548360	28634812	AC020765.6	-	nonsense_mediated_decay	chr16	28352754	29381593	AC009093.11	+	lncRNA	86516	opposite	1736_ID	chr16	28548361	28634812	86452	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
16210	ENST00000262139.10_4	ENST00000590353.1_2	chr17	66417421	66453637	WIPI1	-	protein_coding	chr17	66409763	66521090	AC007780.1	+	lncRNA	36566	opposite	12913_ID	chr17	66417422	66453637	36216	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
44110	ENST00000317058.8_2	ENST00000679262.1_1	chr16	28565240	28603111	SGF29	+	protein_coding	chr16	28548360	28634812	AC020765.6	-	nonsense_mediated_decay	37876	opposite	12050_ID	chr16	28565241	28603111	37871	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
59710	ENST00000335715.9_4	ENST00000679262.1_1	chr16	28603263	28608371	SULT1A2	-	protein_coding	chr16	28548360	28634812	AC020765.6	-	nonsense_mediated_decay	5108	same	12581_ID	chr16	28603264	28608371	5108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
80210	ENST00000362252.1	ENST00000552848.5_3	chr12	54730999	54731098	MIR148B	+	miRNA	chr12	54694985	54739259	COPZ1	+	protein_coding	99	same	8103_ID	chr12	54731000	54731098	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
90010	ENST00000362849.1	ENST00000666293.1_3	chr20	18275786	18276095	RN7SKP74	-	misc_RNA	chr20	18269986	18328183	AL049646.1	-	lncRNA	309	same	9918_ID	chr20	18275787	18276095	309	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
108510	ENST00000363875.1	ENST00000409749.7_3	chr2	237119015	237119191	RNU1-31P	-	snRNA	chr2	237103514	237172988	ASB18	-	protein_coding	176	same	10577_ID	chr2	237119016	237119191	176	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
116110	ENST00000364306.1	ENST00000510042.5_3	chr4	169806505	169806612	RNU6-853P	+	snRNA	chr4	169784920	169931409	CBR4	-	nonsense_mediated_decay	107	opposite	11558_ID	chr4	169806506	169806612	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
14461	ENST00000368607.8_3	ENST00000648921.1_3	chr1	153940377	153946835	CREB3L4	+	protein_coding	chr1	153931626	153948363	AL358472.7	-	nonsense_mediated_decay	6828	opposite	6713_ID	chr1	153940378	153946835	6458	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
15481	ENST00000376356.5_2	ENST00000615958.4_3	chr10	25305540	25315593	THNSL1	+	protein_coding	chr10	25270908	25351208	ENKUR	-	protein_coding	10053	opposite	12679_ID	chr10	25305541	25315593	10053	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
17891	ENST00000384222.1	ENST00000460144.5_2	chr8	67413439	67413546	RNU6-1324P	-	snRNA	chr8	67405795	67430759	VXN	+	nonsense_mediated_decay	107	opposite	11008_ID	chr8	67413440	67413546	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
18181	ENST00000384315.1	ENST00000268389.6_5	chr16	21653614	21653721	RNU6-196P	+	snRNA	chr16	21650870	21663929	IGSF6	-	protein_coding	107	opposite	11064_ID	chr16	21653615	21653721	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
18841	ENST00000384519.1	ENST00000268389.6_5	chr16	21653374	21653481	RNU6-1005P	+	snRNA	chr16	21650870	21663929	IGSF6	-	protein_coding	107	opposite	10760_ID	chr16	21653375	21653481	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
19401	ENST00000384651.1	ENST00000552848.5_3	chr12	54711564	54711671	RNU6-950P	-	snRNA	chr12	54694985	54739259	COPZ1	+	protein_coding	107	opposite	11631_ID	chr12	54711565	54711671	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
20911	ENST00000384974.1	ENST00000679223.1_1	chr19	14640354	14640452	MIR639	+	miRNA	chr19	14625598	14671074	DNAJB1	-	protein_coding	98	opposite	9046_ID	chr19	14640355	14640452	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
21471	ENST00000385065.1	ENST00000626909.2_6	chrX	137749871	137749954	MIR504	-	miRNA	chrX	137714838	138287185	FGF13	-	protein_coding	83	same	8820_ID	chrX	137749872	137749954	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
32831	ENST00000411694.1_3	ENST00000624810.3_1	chr21	45578622	45579955	LINC01678	-	lncRNA	chr21	45554006	45602558	GATD3B	+	protein_coding	1337	opposite	7665_ID	chr21	45578623	45579955	1333	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
33011	ENST00000411956.1_1	ENST00000624810.3_1	chr21	45595371	45596336	AP001056.1	+	lncRNA	chr21	45554006	45602558	GATD3B	+	protein_coding	965	same	6084_ID	chr21	45595372	45596336	965	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
34121	ENST00000414656.1_3	ENST00000471502.1_1	chr9	139698378	139703300	CCDC183-AS1	-	lncRNA	chr9	139694817	139723918	AL355987.2	+	retained_intron	4922	opposite	6572_ID	chr9	139698379	139703300	4922	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
35251	ENST00000417563.3_4	ENST00000333279.3_4	chr1	173604476	173606269	TEX50	+	protein_coding	chr1	173577474	173638990	ANKRD45	-	protein_coding	1793	opposite	12660_ID	chr1	173604477	173606269	1793	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
37151	ENST00000422537.6_5	ENST00000410042.1_1	chr2	99778409	99797390	MITD1	-	protein_coding	chr2	99771460	99811761	AC092587.1	+	protein_coding	19632	opposite	9140_ID	chr2	99778410	99797390	18981	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
38231	ENST00000425275.1_1	ENST00000431391.1_3	chr3	195977419	195978525	AC069257.1	+	lncRNA	chr3	195975100	196045093	AC069257.3	-	nonsense_mediated_decay	1113	opposite	2477_ID	chr3	195977420	195978525	1106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
42101	ENST00000436848.1_3	ENST00000666293.1_3	chr20	18294408	18295755	ZNF133-AS1	-	lncRNA	chr20	18269986	18328183	AL049646.1	-	lncRNA	1347	same	13017_ID	chr20	18294409	18295755	1347	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
45401	ENST00000446383.5_1	ENST00000626909.2_6	chrX	137793613	137798254	FGF13-AS1	+	lncRNA	chrX	137714838	138287185	FGF13	-	protein_coding	5166	opposite	7019_ID	chrX	137793614	137798254	4641	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
45851	ENST00000447572.1_3	ENST00000464081.1_2	chr1	43241483	43242461	AC098484.1	-	lncRNA	chr1	43232962	43260164	AC098484.3	+	nonsense_mediated_decay	978	opposite	3336_ID	chr1	43241484	43242461	978	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
46121	ENST00000448422.2_1	ENST00000337318.8_5	chr10	126392193	126402786	FAM53B-AS1	+	lncRNA	chr10	126307860	126432947	FAM53B	-	protein_coding	10593	opposite	6992_ID	chr10	126392194	126402786	10593	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
46721	ENST00000450154.1_1	ENST00000358151.8_1	chr9	114336471	114337707	AL135787.1	+	lncRNA	chr9	114287438	114340124	ZNF483	+	protein_coding	1236	same	4873_ID	chr9	114336472	114337707	1236	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
48851	ENST00000455974.1_1	ENST00000654751.1_1	chr3	34244735	34310303	AC123023.1	+	lncRNA	chr3	33998463	34428619	LINC01811	+	lncRNA	65568	same	3987_ID	chr3	34244736	34310303	65568	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
50191	ENST00000458851.1	ENST00000502766.2_3	chr8	80712367	80712430	RNU7-85P	-	snRNA	chr8	80681606	80783972	AC036214.1	-	lncRNA	63	same	11815_ID	chr8	80712368	80712430	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
51051	ENST00000459398.1	ENST00000652826.1_1	chr2	179696097	179696176	RNU7-104P	-	snRNA	chr2	179693075	179872534	AC092640.1	+	lncRNA	79	opposite	11694_ID	chr2	179696098	179696176	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
56081	ENST00000491172.2	ENST00000433835.3_4	chr22	24221681	24221977	RN7SL268P	-	misc_RNA	chr22	24204374	24237410	AP000350.4	+	protein_coding	296	opposite	10065_ID	chr22	24221682	24221977	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
57091	ENST00000498575.1_4	ENST00000428778.5_4	chr6	32120578	32122142	AL662884.3	-	lncRNA	chr6	32118271	32122150	AL662884.4	-	protein_coding	1564	same	5874_ID	chr6	32120579	32122142	1564	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
60361	ENST00000511291.1_3	ENST00000656853.1_1	chr4	174845357	174912002	AC106895.2	-	lncRNA	chr4	174818393	174922639	LINC02269	+	lncRNA	66818	opposite	3674_ID	chr4	174845358	174912002	66645	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
61831	ENST00000515495.1_3	ENST00000502344.5_3	chr4	15359764	15421656	AC099550.1	-	lncRNA	chr4	15006565	15429538	C1QTNF7-AS1	-	lncRNA	61892	same	3380_ID	chr4	15359765	15421656	61892	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
62211	ENST00000515936.1	ENST00000377707.4_4	chr9	37936703	37936765	RNU7-124P	-	snRNA	chr9	37915894	38069224	SHB	-	protein_coding	62	same	11710_ID	chr9	37936704	37936765	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
65371	ENST00000516877.1	ENST00000549503.1_5	chr14	30281121	30281224	RNU6-1234P	+	snRNA	chr14	30133017	30661104	PRKD1	-	protein_coding	103	opposite	10931_ID	chr14	30281122	30281224	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
66901	ENST00000517248.1	ENST00000514515.5_3	chr5	111055465	111055758	RN7SKP57	-	misc_RNA	chr5	110998317	111092891	NREP	-	nonsense_mediated_decay	293	same	9908_ID	chr5	111055466	111055758	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
68031	ENST00000519805.1_1	ENST00000647695.1_3	chr8	106682218	106691259	AC103853.2	+	lncRNA	chr8	106558316	106810637	ZFPM2-AS1	-	lncRNA	9041	opposite	3482_ID	chr8	106682219	106691259	9041	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
68231	ENST00000520588.1_3	ENST00000647695.1_3	chr8	106674579	106697993	AC103853.1	-	lncRNA	chr8	106558316	106810637	ZFPM2-AS1	-	lncRNA	23414	same	3479_ID	chr8	106674580	106697993	23414	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
68661	ENST00000522005.1_3	ENST00000518567.1_3	chr8	125048250	125052709	AC100871.2	-	lncRNA	chr8	124996377	125053023	FER1L6-AS1	-	lncRNA	4459	same	3444_ID	chr8	125048251	125052709	4459	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
70181	ENST00000527398.1_3	ENST00000299424.9_4	chr11	6629896	6631366	AC091564.3	-	lncRNA	chr11	6627523	6633447	TAF10	-	protein_coding	1470	same	3003_ID	chr11	6629897	6631366	1470	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	5	5
70221	ENST00000527443.1_1	ENST00000527565.1_3	chr11	7726834	7731064	AC104237.1	+	lncRNA	chr11	7726174	7904494	AC044810.3	-	lncRNA	4230	opposite	3520_ID	chr11	7726835	7731064	4230	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
72621	ENST00000537724.1_3	ENST00000535324.1_1	chr12	26488796	26489883	AC055720.2	-	lncRNA	chr12	26471885	26574395	AC024145.1	+	lncRNA	1087	opposite	2330_ID	chr12	26488797	26489883	1087	*	-	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
72811	ENST00000538795.1	ENST00000442435.3_3	chr1	150521896	150524367	AL356356.1	+	protein_coding	chr1	150521037	150530200	ADAMTSL4-AS2	-	lncRNA	2471	opposite	5384_ID	chr1	150521897	150524367	2471	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
73781	ENST00000544380.1_1	ENST00000545990.6_4	chr12	4754661	4757193	AC005832.1	+	lncRNA	chr12	4724673	4758213	AKAP3	-	protein_coding	2532	opposite	365_ID	chr12	4754662	4757193	2532	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
74141	ENST00000546376.1_3	ENST00000665409.1_1	chr14	36530231	36536396	AL133304.2	-	lncRNA	chr14	36467785	36537467	AL133304.3	+	lncRNA	6165	opposite	4838_ID	chr14	36530232	36536396	6165	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
74521	ENST00000547628.2_4	ENST00000547473.1_3	chr19	12154619	12163776	ZNF878	-	protein_coding	chr19	12128702	12163782	AC008770.1	-	nonsense_mediated_decay	9157	same	13081_ID	chr19	12154620	12163776	9157	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
79051	ENST00000561881.1_1	ENST00000602672.2_4	chr1	98432560	98434370	BX005019.1	-	lncRNA	chr1	98399029	98511703	MIR137HG	-	lncRNA	1810	same	6444_ID	chr1	98432561	98434370	1810	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
79251	ENST00000562393.1_1	ENST00000648152.1_3	chr16	84861868	84862848	AC025280.1	+	lncRNA	chr16	84850787	84890271	AC025280.3	-	lncRNA	24805	opposite	2073_ID	chr16	84861869	84862848	980	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
82151	ENST00000568093.3_1	ENST00000559435.1_6	chr15	40524282	40528310	AC020658.3	+	lncRNA	chr15	40510700	40557091	BUB1B-PAK6	+	nonsense_mediated_decay	4028	same	1719_ID	chr15	40524283	40528310	4028	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
84321	ENST00000576615.1_3	ENST00000575235.5_1	chr17	7342477	7346646	AC113189.3	-	lncRNA	chr17	7341591	7346650	FGF11	+	protein_coding	4169	opposite	3843_ID	chr17	7342478	7346646	4169	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	5
84671	ENST00000577308.1	ENST00000354552.7_5	chr3	99683157	99683242	MIR3921	-	miRNA	chr3	99551987	99833357	FILIP1L	-	protein_coding	85	same	8425_ID	chr3	99683158	99683242	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
85251	ENST00000577604.1	ENST00000552848.5_3	chr12	54738393	54738645	RN7SL744P	+	misc_RNA	chr12	54694985	54739259	COPZ1	+	protein_coding	252	same	10400_ID	chr12	54738394	54738645	252	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
86541	ENST00000578326.1	ENST00000664906.1_3	chr2	35034319	35034623	RN7SL602P	-	misc_RNA	chr2	34957353	35047793	AC012593.2	-	lncRNA	304	same	10298_ID	chr2	35034320	35034623	304	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
86831	ENST00000578512.1	ENST00000563315.2_4	chr16	50776215	50776288	hsa-mir-3181	+	miRNA	chr16	50761327	50776726	AC007728.2	-	lncRNA	73	opposite	7292_ID	chr16	50776216	50776288	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
88341	ENST00000579437.1_1	ENST00000434399.5_3	chr7	30589832	30591185	AC005154.3	+	lncRNA	chr7	30555924	30602441	GARS1-DT	-	lncRNA	1353	opposite	241_ID	chr7	30589833	30591185	1353	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
88731	ENST00000579643.1	ENST00000668245.1_4	chr17	45119190	45119483	RN7SL270P	+	misc_RNA	chr17	45060652	45177655	AC005670.3	-	lncRNA	293	opposite	10068_ID	chr17	45119191	45119483	293	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
89711	ENST00000580221.1	ENST00000652504.1_2	chr19	57230570	57230655	AC006115.1	-	miRNA	chr19	57202051	57334742	AC006115.2	+	lncRNA	85	opposite	419_ID	chr19	57230571	57230655	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
91221	ENST00000580962.1_1	ENST00000583481.5_1	chr17	20903059	20903636	AC087393.2	+	lncRNA	chr17	20841863	20905320	CCDC144NL-AS1	+	lncRNA	577	same	2813_ID	chr17	20903060	20903636	577	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
92381	ENST00000581735.1	ENST00000442435.3_3	chr1	150524404	150524490	MIR4257	+	miRNA	chr1	150521037	150530200	ADAMTSL4-AS2	-	lncRNA	86	opposite	8459_ID	chr1	150524405	150524490	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
93671	ENST00000582362.1	ENST00000453457.7_5	chr22	26279040	26279128	Z98949.1	-	miRNA	chr22	26272820	26297009	MYO18B-AS1	-	lncRNA	88	same	12982_ID	chr22	26279041	26279128	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
97741	ENST00000584643.1_1	ENST00000225576.7_3	chr17	15434086	15434403	AC005838.2	-	lncRNA	chr17	15405577	15466858	TVP23C	-	protein_coding	317	same	370_ID	chr17	15434087	15434403	317	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
97961	ENST00000584756.1	ENST00000627565.2_4	chr10	111764011	111764315	RN7SL450P	+	misc_RNA	chr10	111705316	111768139	ADD3-AS1	-	lncRNA	304	opposite	10191_ID	chr10	111764012	111764315	304	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
102191	ENST00000595906.2_1	ENST00000263921.8_6	chr4	54925763	54927377	AC110792.2	+	lncRNA	chr4	54875955	54930772	CHIC2	-	protein_coding	1614	opposite	3798_ID	chr4	54925764	54927377	1614	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
103011	ENST00000597953.1_1	ENST00000600150.5_3	chr3	142719748	142720309	AC026304.1	-	lncRNA	chr3	142683338	142735213	U2SURP	+	protein_coding	561	opposite	2122_ID	chr3	142719749	142720309	561	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
103291	ENST00000598764.1	ENST00000624810.3_1	chr21	45587817	45593580	AP001055.1	-	protein_coding	chr21	45554006	45602558	GATD3B	+	protein_coding	5763	opposite	6080_ID	chr21	45587818	45593580	5763	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
105941	ENST00000604219.1_1	ENST00000358788.10_1	chr2	75897114	75897580	AC005034.5	+	lncRNA	chr2	75873919	75917885	MRPL19	+	protein_coding	466	same	223_ID	chr2	75897115	75897580	466	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
108961	ENST00000608069.1_2	ENST00000409752.5_3	chr2	68480001	68480980	AC017083.1	+	lncRNA	chr2	68407935	68483369	PPP3R1	-	protein_coding	23923	opposite	1607_ID	chr2	68480002	68480980	979	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
109051	ENST00000608147.1_1	ENST00000648921.1_3	chr1	153938991	153939406	AL358472.3	+	lncRNA	chr1	153931626	153948363	AL358472.7	-	nonsense_mediated_decay	415	opposite	5457_ID	chr1	153938992	153939406	415	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
109691	ENST00000608960.1	ENST00000651475.1_3	chr22	18036249	18037847	AC004019.18	+	lincRNA	chr22	18000542	18050143	AC007666.2	-	lncRNA	1598	opposite	92_ID	chr22	18036250	18037847	1598	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
111061	ENST00000610409.1_1	ENST00000433082.6_3	chr1	214157135	214159762	AC011700.1	-	lncRNA	chr1	213991093	214161725	PROX1-AS1	-	lncRNA	2627	same	1282_ID	chr1	214157136	214159762	2627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
111591	ENST00000611668.4_3	ENST00000610598.4_3	chrX	134947434	134953875	CT45A10	-	protein_coding	chrX	134945963	134953982	CT45A7	-	protein_coding	6441	same	6724_ID	chrX	134947435	134953875	6441	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	5
112291	ENST00000613454.1_2	ENST00000679262.1_1	chr16	28565029	28565461	AC020765.2	-	lncRNA	chr16	28548360	28634812	AC020765.6	-	nonsense_mediated_decay	432	same	1735_ID	chr16	28565030	28565461	432	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
112441	ENST00000613894.3_3	ENST00000623661.1_5	chr21	35771705	35773413	FAM243B	-	protein_coding	chr21	35751726	35780163	SMIM11B	+	protein_coding	1708	opposite	6984_ID	chr21	35771706	35773413	1708	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	5
112531	ENST00000613987.1_1	ENST00000559435.1_6	chr15	40518586	40519270	AC020658.4	+	lncRNA	chr15	40510700	40557091	BUB1B-PAK6	+	nonsense_mediated_decay	684	same	1721_ID	chr15	40518587	40519270	684	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
115361	ENST00000620696.1_2	ENST00000565684.5_6	chr16	57832097	57847715	AC092118.1	+	lncRNA	chr16	57805582	57880439	KIFC3	-	protein_coding	18753	opposite	3052_ID	chr16	57832098	57847715	15618	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
116531	ENST00000623360.1_3	ENST00000559435.1_6	chr15	40542864	40545111	C15orf56	-	lncRNA	chr15	40510700	40557091	BUB1B-PAK6	+	nonsense_mediated_decay	2306	opposite	6476_ID	chr15	40542865	40545111	2247	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
118071	ENST00000630920.1_1	ENST00000502082.5_3	chr8	128412643	128414395	CCAT2	+	lncRNA	chr8	128302061	128494384	CASC8	-	lncRNA	1752	opposite	6564_ID	chr8	128412644	128414395	1752	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
118211	ENST00000633140.1_2	ENST00000648921.1_3	chr1	153936836	153937546	AL358472.4	+	lncRNA	chr1	153931626	153948363	AL358472.7	-	nonsense_mediated_decay	710	opposite	5459_ID	chr1	153936837	153937546	710	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
119601	ENST00000641761.1_1	ENST00000556874.1_3	chr14	66878421	66965395	CCDC196	+	processed_transcript	chr14	66697050	66976112	AL359232.1	-	lncRNA	86974	opposite	6573_ID	chr14	66878422	66965395	86974	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
119801	ENST00000642115.2_2	ENST00000641970.1_3	chr5	25188167	25188887	AC099499.2	-	lncRNA	chr5	25087558	25190799	LINC02228	-	lncRNA	720	same	3365_ID	chr5	25188168	25188887	720	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
120101	ENST00000645438.1_1	ENST00000502082.5_3	chr8	128334427	128429455	POU5F1B	+	protein_coding	chr8	128302061	128494384	CASC8	-	lncRNA	97884	opposite	9604_ID	chr8	128334428	128429455	95028	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
121551	ENST00000649638.1_3	ENST00000366209.6_5	chr2	34359437	34445642	AC008170.1	-	lncRNA	chr2	33931952	34522820	LINC01320	+	lncRNA	86205	opposite	712_ID	chr2	34359438	34445642	86205	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
122771	ENST00000652329.1_3	ENST00000652803.1_1	chr9	132265739	132268712	AL391056.2	-	lncRNA	chr9	132249181	132275965	LINC00963	+	lncRNA	2973	opposite	5567_ID	chr9	132265740	132268712	2973	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	5
126531	ENST00000660116.1_1	ENST00000366408.3_3	chr1	169028813	169031679	AL031726.2	+	lncRNA	chr1	168873142	169056243	LINC00970	-	lncRNA	2866	opposite	4556_ID	chr1	169028814	169031679	2866	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	5
127241	ENST00000661767.1_1	ENST00000561007.1_1	chr15	51747464	51752750	AC066613.1	+	lncRNA	chr15	51706293	51791030	AC066613.2	+	lncRNA	5315	same	2371_ID	chr15	51747465	51752750	5286	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
130501	ENST00000668846.1_1	ENST00000519519.5_3	chr8	91658647	91683157	AC106038.1	+	lncRNA	chr8	91637898	91803859	TMEM64	-	protein_coding	24510	opposite	3634_ID	chr8	91658648	91683157	24510	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
131761	ENST00000671436.1_1	ENST00000655615.1_3	chr9	102293788	102345583	AL162394.1	+	lncRNA	chr9	102159305	102668887	STX17-AS1	-	lncRNA	51795	opposite	5196_ID	chr9	102293789	102345583	51795	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
54210	ENST00000329434.2_2	ENST00000529488.5_3	chr11	7817451	7818520	OR5P2	-	protein_coding	chr11	7775939	7904529	AC044810.2	-	lncRNA	1069	same	9463_ID	chr11	7817452	7818520	1069	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
57310	ENST00000333130.3_1	ENST00000452818.1_3	chr22	19419424	19423598	MRPL40	+	protein_coding	chr22	19385590	19434973	HIRA	-	nonsense_mediated_decay	4174	opposite	9164_ID	chr22	19419425	19423598	4174	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
42221	ENST00000437102.1_3	ENST00000451200.6_2	chr3	42897496	42917390	CYP8B1	-	protein_coding	chr3	42850937	43073827	AC092042.3	+	processed_transcript	19894	opposite	6760_ID	chr3	42897497	42917390	19894	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
43341	ENST00000440367.7_2	ENST00000451200.6_2	chr3	42947633	42960826	ZNF662	+	protein_coding	chr3	42850937	43073827	AC092042.3	+	processed_transcript	13193	same	13063_ID	chr3	42947634	42960826	13193	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
55031	ENST00000484055.2	ENST00000544880.1_1	chr11	61211601	61211899	RN7SL23P	+	misc_RNA	chr11	61197614	61253294	AP003108.2	+	processed_transcript	298	same	10045_ID	chr11	61211602	61211899	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
58551	ENST00000505522.6_3	ENST00000509400.5_3	chr5	138609819	138620588	SNHG4	+	lncRNA	chr5	138456723	138629223	SIL1	-	processed_transcript	10798	opposite	12149_ID	chr5	138609820	138620588	10769	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	5
69241	ENST00000523775.1_3	ENST00000499522.6_3	chr8	104240652	104241542	AC025370.1	-	lncRNA	chr8	104178156	104298135	BAALC-AS1	-	lncRNA	890	same	2080_ID	chr8	104240653	104241542	890	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
75831	ENST00000553638.1_3	ENST00000553356.1_1	chr14	96725747	96734961	AL355102.4	-	lncRNA	chr14	96722546	96735304	BDKRB1	+	protein_coding	9214	opposite	5318_ID	chr14	96725748	96734961	9214	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	5
81411	ENST00000566639.1_1	ENST00000640345.1_3	chr16	81064374	81065090	AC092718.4	+	lncRNA	chr16	81055920	81129889	AC092718.8	-	protein_coding	716	opposite	3126_ID	chr16	81064375	81065090	716	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
98701	ENST00000585193.1_1	ENST00000581159.5_5	chr17	65240952	65241922	AC007448.4	+	lncRNA	chr17	65199495	65242105	HELZ	-	protein_coding	970	opposite	577_ID	chr17	65240953	65241922	970	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
119271	ENST00000641167.1_4	ENST00000529488.5_3	chr11	7846364	7852387	OR5P3	-	protein_coding	chr11	7775939	7904529	AC044810.2	-	lncRNA	6023	same	9464_ID	chr11	7846365	7852387	6023	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
124202	ENST00000655870.1_1	ENST00000636372.1_6	chr7	155327658	155329520	AC009403.3	+	lncRNA	chr7	155294708	155348145	CNPY1	-	protein_coding	1862	opposite	956_ID	chr7	155327659	155329520	1862	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
32991	ENST00000411956.1_1	ENST00000645813.1_3	chr21	45595371	45596336	AP001056.1	+	lncRNA	chr21	45592051	45614221	AP001056.2	-	lncRNA	965	opposite	6082_ID	chr21	45595372	45596336	965	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
121371	ENST00000649486.1_3	ENST00000648594.1_3	chr1	22354809	22379420	CDC42-AS1	-	lncRNA	chr1	22352003	22427853	CDC42	+	protein_coding	24611	opposite	6596_ID	chr1	22354810	22379420	24611	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
11	ENST00000175238.10_3	ENST00000519689.1_3	chr8	24298538	24367078	ADAM7	+	protein_coding	chr8	24158397	24769586	AC120193.1	-	lncRNA	86041	opposite	4349_ID	chr8	24298539	24367078	68540	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
14	ENST00000199447.9_2	ENST00000476620.1_3	chr7	37888198	37939999	NME8	+	protein_coding	chr7	37723445	37990014	EPDR1	+	protein_coding	51801	same	9273_ID	chr7	37888199	37939999	51801	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
16	ENST00000209718.8_3	ENST00000418393.1_1	chr17	39078951	39093898	KRT23	-	protein_coding	chr17	39077681	39132178	AC004231.1	+	lncRNA	14947	opposite	7468_ID	chr17	39078952	39093898	14947	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
17	ENST00000209929.10_2	ENST00000669750.1_3	chr1	171154438	171181825	FMO2	+	protein_coding	chr1	170717713	171220947	BX284613.2	-	lncRNA	27438	opposite	7046_ID	chr1	171154439	171181825	27387	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
21	ENST00000217999.3_4	ENST00000553843.5_1	chrX	119243008	119249823	RHOXF1	-	protein_coding	chrX	119170200	119280760	RHOXF1-AS1	+	lncRNA	6815	opposite	9749_ID	chrX	119243009	119249823	6815	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
33	ENST00000222543.11_6	ENST00000455502.5_1	chr7	93514707	93520065	TFPI2	-	protein_coding	chr7	93220884	93540387	GNGT1	+	protein_coding	5358	opposite	12666_ID	chr7	93514708	93520065	5358	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
37	ENST00000222803.10_3	ENST00000422239.6_2	chr7	30050202	30066318	FKBP14	-	protein_coding	chr7	30028215	30067159	FKBP14-AS1	+	lncRNA	16116	opposite	7031_ID	chr7	30050203	30066318	16116	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
40	ENST00000225550.4_4	ENST00000432258.1_1	chr17	39576798	39580837	KRT37	-	protein_coding	chr17	39558674	39581301	AC003958.2	+	lncRNA	4039	opposite	7469_ID	chr17	39576799	39580837	4039	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
53	ENST00000231228.3_3	ENST00000521472.6_2	chr5	158741787	158757495	IL12B	-	protein_coding	chr5	158737940	158760190	AC008691.1	+	lncRNA	15708	opposite	7347_ID	chr5	158741788	158757495	15708	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	3	4
56	ENST00000231706.6_4	ENST00000643719.1_1	chr3	170177335	170303864	SLC7A14	-	protein_coding	chr3	170166426	170389286	SLC7A14-AS1	+	lncRNA	126529	opposite	12106_ID	chr3	170177336	170303864	126529	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
59	ENST00000232892.12_4	ENST00000483843.6_3	chr3	151531903	151546276	AADAC	+	protein_coding	chr3	151469230	151645956	AADACL2-AS1	-	lncRNA	14416	opposite	4_ID	chr3	151531904	151546276	14373	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
68	ENST00000237642.6_1	ENST00000670253.1_3	chr4	77227178	77232752	STBD1	+	protein_coding	chr4	77161892	77233251	AC034139.1	-	lncRNA	5574	opposite	12565_ID	chr4	77227179	77232752	5574	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
76	ENST00000239926.9_2	ENST00000514616.6_4	chr5	137203548	137223540	MYOT	+	protein_coding	chr5	137148516	137225025	AC106791.1	-	lncRNA	19994	opposite	9214_ID	chr5	137203549	137223540	19992	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
90	ENST00000244669.2_1	ENST00000482853.5_6	chr6	41021042	41032250	APOBEC2	+	protein_coding	chr6	41001365	41038956	OARD1	-	nonsense_mediated_decay	11208	opposite	6321_ID	chr6	41021043	41032250	11208	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
112	ENST00000251535.11_2	ENST00000572547.1_3	chr17	6899367	6914073	ALOX12	+	protein_coding	chr17	6888812	6922733	AC040977.2	-	lncRNA	14706	opposite	5934_ID	chr17	6899368	6914073	14706	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
126	ENST00000254616.11_2	ENST00000639224.1_1	chr11	6502730	6505911	TIMM10B	+	protein_coding	chr11	6502714	6530208	AC084337.2	+	nonsense_mediated_decay	3181	same	12696_ID	chr11	6502731	6505911	3181	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	4
129	ENST00000255108.8_2	ENST00000647729.1_3	chr1	44435681	44439041	DPH2	+	protein_coding	chr1	44434022	44440493	AL357079.2	-	lncRNA	3370	opposite	6838_ID	chr1	44435682	44439041	3360	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
130	ENST00000255192.8_2	ENST00000520388.5_3	chr5	78365589	78385892	BHMT2	+	protein_coding	chr5	78351676	78531861	DMGDH	-	processed_transcript	20303	opposite	6414_ID	chr5	78365590	78385892	20303	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
173	ENST00000264669.10_4	ENST00000502509.5_1	chr5	7859271	7869144	FASTKD3	-	protein_coding	chr5	7851307	7878151	MTRR	+	processed_transcript	9879	opposite	7004_ID	chr5	7859272	7869144	9873	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
180	ENST00000266086.6_4	ENST00000452181.2_2	chr22	32614450	32651334	SLC5A4	-	protein_coding	chr22	32601101	32674369	SLC5A4-AS1	+	lncRNA	36884	opposite	12101_ID	chr22	32614451	32651334	36884	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
183	ENST00000266984.9_3	ENST00000398092.4_3	chr12	49297892	49325623	CCDC65	+	protein_coding	chr12	49297285	49351148	AC073610.2	-	protein_coding	27731	opposite	6577_ID	chr12	49297893	49325623	27731	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
189	ENST00000268389.6_5	ENST00000567404.5_2	chr16	21650870	21663929	IGSF6	-	protein_coding	chr16	21608542	21666645	METTL9	+	protein_coding	13059	opposite	7344_ID	chr16	21650871	21663929	13059	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
204	ENST00000274565.5_3	ENST00000667608.1_3	chr5	147691985	147695482	SPINK7	+	protein_coding	chr5	147467792	147763432	AC011346.1	-	lncRNA	3504	opposite	12533_ID	chr5	147691986	147695482	3497	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
212	ENST00000276925.7_5	ENST00000404796.3_2	chr9	22002901	22009304	CDKN2B	-	protein_coding	chr9	21802634	22029593	AL359922.1	+	nonsense_mediated_decay	6403	opposite	6605_ID	chr9	22002902	22009304	6403	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
224	ENST00000279022.7_2	ENST00000439595.5_3	chr20	35169921	35179850	MYL9	+	protein_coding	chr20	35136104	35201678	DLGAP4-AS1	-	lncRNA	9951	opposite	9205_ID	chr20	35169922	35179850	9929	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
226	ENST00000279791.1_3	ENST00000641310.1_3	chr11	56229944	56230877	OR5M9	-	protein_coding	chr11	56226696	56240828	AP002512.3	-	protein_coding	933	same	9461_ID	chr11	56229945	56230877	933	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	4	4
254	ENST00000289448.3_7	ENST00000503323.1_1	chr5	143191725	143200284	HMHB1	+	protein_coding	chr5	142985192	143208337	AC008696.2	+	lncRNA	8559	same	7247_ID	chr5	143191726	143200284	8559	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
268	ENST00000292303.4_1	ENST00000451485.1_3	chr3	46412344	46417697	CCR5	+	protein_coding	chr3	46406445	46448550	CCR5AS	-	lncRNA	5353	opposite	6589_ID	chr3	46412345	46417697	5353	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
274	ENST00000293379.9_4	ENST00000552785.1_1	chr12	54789044	54813050	ITGA5	-	protein_coding	chr12	54747575	54860769	AC079313.1	+	lncRNA	24006	opposite	7374_ID	chr12	54789045	54813050	24006	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
287	ENST00000295702.9_4	ENST00000650235.1_1	chr1	155978838	155990742	SSR2	-	protein_coding	chr1	155971743	156002698	AL355388.2	+	lncRNA	11904	opposite	12550_ID	chr1	155978839	155990742	11904	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
288	ENST00000295727.2_3	ENST00000627043.2_3	chr2	219845808	219849906	FEV	-	protein_coding	chr2	219841005	219854662	LINC00608	+	lncRNA	4098	opposite	7015_ID	chr2	219845809	219849906	4098	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
308	ENST00000298130.5_4	ENST00000551935.5_3	chr14	34901993	34931446	SPTSSA	-	protein_coding	chr14	34454586	34931980	EGLN3	-	processed_transcript	29453	same	12540_ID	chr14	34901994	34931446	29453	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
325	ENST00000301547.10_4	ENST00000595562.1_3	chr19	12540519	12551835	ZNF443	-	protein_coding	chr19	12502762	12551896	AC008758.5	-	protein_coding	11316	same	13047_ID	chr19	12540520	12551835	11316	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	4
326	ENST00000301744.7_5	ENST00000575785.2_3	chr16	3482413	3493504	ZNF597	-	protein_coding	chr16	3415111	3529550	AC025283.2	+	nonsense_mediated_decay	11091	opposite	13059_ID	chr16	3482414	3493504	11091	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
327	ENST00000301761.7_3	ENST00000544025.5_1	chr11	61197595	61214205	SDHAF2	+	protein_coding	chr11	61196691	61249351	AP003108.2	+	processed_transcript	16692	same	12025_ID	chr11	61197596	61214205	16610	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
361	ENST00000306390.7_4	ENST00000586020.1_3	chr19	4536413	4540048	LRG1	-	protein_coding	chr19	4528438	4540079	AC011498.4	-	nonsense_mediated_decay	3635	same	7851_ID	chr19	4536414	4540048	3635	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
376	ENST00000308906.6_5	ENST00000336866.7_2	chr20	62714732	62715712	LKAAEAR1	-	protein_coding	chr20	62711434	62731986	OPRL1	+	protein_coding	980	opposite	7828_ID	chr20	62714733	62715712	980	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
380	ENST00000309324.9_5	ENST00000579649.5_1	chr19	5678432	5680527	MICOS13	-	protein_coding	chr19	5674957	5691678	RPL36	+	protein_coding	2096	opposite	7949_ID	chr19	5678433	5680527	2095	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
383	ENST00000309758.6_2	ENST00000537821.2_1	chr1	161494329	161496684	HSPA6	+	protein_coding	chr1	161482965	161574889	AL590385.2	+	lncRNA	2355	same	7310_ID	chr1	161494330	161496684	2355	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
386	ENST00000310248.3_2	ENST00000647575.1_1	chr12	48595865	48597170	OR10AD1	-	protein_coding	chr12	48592139	48624058	AC024257.3	+	lncRNA	1305	opposite	9346_ID	chr12	48595866	48597170	1305	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
388	ENST00000310373.7_5	ENST00000593060.5_1	chr19	55525072	55549632	GP6	-	protein_coding	chr19	55517560	55559454	AC011476.3	+	lncRNA	24560	opposite	7147_ID	chr19	55525073	55549632	24560	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
391	ENST00000310791.4_2	ENST00000656583.1_3	chr12	27849379	27850529	REP15	+	protein_coding	chr12	27849320	27863736	AC009509.1	-	lncRNA	1150	opposite	9728_ID	chr12	27849380	27850529	1150	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
396	ENST00000311106.8_4	ENST00000502645.2_1	chr5	95726036	95768952	PCSK1	-	protein_coding	chr5	95297704	95966789	AC104123.1	+	lncRNA	43811	opposite	9516_ID	chr5	95726037	95768952	42916	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
412	ENST00000312504.10_2	ENST00000412896.5_4	chr2	215275777	215443700	VWC2L	+	protein_coding	chr2	215114763	215548970	AC068051.1	-	lncRNA	167923	opposite	12899_ID	chr2	215275778	215443700	167923	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
414	ENST00000312814.11_4	ENST00000656697.1_1	chr7	112402431	112430448	TMEM168	-	protein_coding	chr7	112262456	112536680	AC002463.1	+	lncRNA	28047	opposite	12718_ID	chr7	112402432	112430448	28017	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
422	ENST00000314111.4_3	ENST00000522728.5_2	chr8	143953771	143961262	CYP11B1	-	retained_intron	chr8	143915662	143997922	GML	+	protein_coding	7491	opposite	6752_ID	chr8	143953772	143961262	7491	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
437	ENST00000317037.2_1	ENST00000412903.1_5	chr11	5841543	5842578	OR52N2	+	protein_coding	chr11	5699549	5959849	TRIM5	-	protein_coding	1035	opposite	9448_ID	chr11	5841544	5842578	1035	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
442	ENST00000317121.6_3	ENST00000412903.1_5	chr11	5757677	5759753	OR56B1	+	protein_coding	chr11	5699549	5959849	TRIM5	-	protein_coding	2076	opposite	9454_ID	chr11	5757678	5759753	2076	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
469	ENST00000321253.7_2	ENST00000427024.5_3	chr2	132233691	132240507	TUBA3D	+	protein_coding	chr2	132222472	132249908	MZT2A	-	nonsense_mediated_decay	6816	opposite	12822_ID	chr2	132233692	132240507	6816	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
473	ENST00000321762.3_2	ENST00000263266.3_3	chr19	49109998	49110971	SPACA4	+	protein_coding	chr19	49104066	49116819	FAM83E	-	protein_coding	973	opposite	12500_ID	chr19	49109999	49110971	973	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
494	ENST00000323404.2_4	ENST00000573491.5_4	chr17	3194310	3201654	OR3A1	-	protein_coding	chr17	3182068	3289587	OR3A2	-	protein_coding	7344	same	9390_ID	chr17	3194311	3201654	7344	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
521	ENST00000327047.6_4	ENST00000476886.5_1	chr3	150644353	150690514	CLRN1	-	protein_coding	chr3	150570270	150798513	CLRN1-AS1	+	lncRNA	46565	opposite	6668_ID	chr3	150644354	150690514	46161	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
524	ENST00000327419.7_2	ENST00000532992.5_3	chr11	109292915	109299893	C11orf87	+	protein_coding	chr11	109225811	109454633	AP003049.2	-	lncRNA	6978	opposite	6470_ID	chr11	109292916	109299893	6978	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
546	ENST00000329476.4_2	ENST00000630664.2_5	chr4	156129787	156138228	NPY2R	+	protein_coding	chr4	156094867	156281450	AC097467.3	+	lncRNA	8443	same	9295_ID	chr4	156129788	156138228	8441	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
547	ENST00000329493.5_1	ENST00000615073.4_4	chr19	3539151	3544028	C19orf71	+	protein_coding	chr19	3538258	3547362	MFSD12	-	protein_coding	4877	opposite	6492_ID	chr19	3539152	3544028	4877	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
556	ENST00000331780.5_4	ENST00000657572.1_1	chr17	43331759	43339461	SPATA32	-	protein_coding	chr17	43325282	43347181	MAP3K14-AS1	+	lncRNA	7702	opposite	12513_ID	chr17	43331760	43339461	7702	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
562	ENST00000332439.5_2	ENST00000576861.5_4	chr17	7761320	7765600	CYB5D1	+	protein_coding	chr17	7760003	7788527	NAA38	-	protein_coding	4537	opposite	6749_ID	chr17	7761321	7765600	4280	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
567	ENST00000332663.3_1	ENST00000638815.1_2	chr15	22368477	22369561	AC135068.1	+	protein_coding	chr15	22358191	22371172	OR4M2	+	processed_transcript	1084	same	4138_ID	chr15	22368478	22369561	1084	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
569	ENST00000332690.1_2	ENST00000429289.5_1	chr7	143140545	143141502	TAS2R60	+	protein_coding	chr7	143104905	143220542	EPHA1-AS1	+	lncRNA	957	same	12627_ID	chr7	143140546	143141502	957	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
587	ENST00000334662.2_2	ENST00000622352.3_4	chr21	46031995	46032871	KRTAP10-8	+	protein_coding	chr21	45993600	46058201	KRTAP10-4	+	protein_coding	876	same	7487_ID	chr21	46031996	46032871	876	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
591	ENST00000335117.9_2	ENST00000593655.5_3	chr19	20278022	20311297	ZNF486	+	protein_coding	chr19	20236227	20432114	AC011447.3	-	lncRNA	33275	opposite	13051_ID	chr19	20278023	20311297	33275	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
613	ENST00000338482.5_1	ENST00000566202.5_4	chr16	71559135	71572649	CHST4	+	protein_coding	chr16	71512872	71598992	ZNF19	-	protein_coding	13516	opposite	6651_ID	chr16	71559136	71572649	13514	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
614	ENST00000338513.1_2	ENST00000426886.1_3	chr1	35220647	35224113	GJB5	+	protein_coding	chr1	35178337	35325336	SMIM12	-	nonsense_mediated_decay	3466	opposite	7126_ID	chr1	35220648	35224113	3466	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
621	ENST00000339480.3_4	ENST00000426886.1_3	chr1	35225340	35227928	GJB4	+	protein_coding	chr1	35178337	35325336	SMIM12	-	nonsense_mediated_decay	2588	opposite	7125_ID	chr1	35225341	35227928	2588	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
622	ENST00000339485.4_2	ENST00000588891.1_1	chr19	5904882	5910864	VMAC	+	protein_coding	chr19	5904851	5914718	AC104532.1	+	nonsense_mediated_decay	5982	same	12892_ID	chr19	5904883	5910864	5982	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
642	ENST00000342280.5_2	ENST00000426886.1_3	chr1	35258599	35261348	GJA4	+	protein_coding	chr1	35178337	35325336	SMIM12	-	nonsense_mediated_decay	2749	opposite	7120_ID	chr1	35258600	35261348	2749	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
655	ENST00000344229.7_1	ENST00000481585.1_3	chr3	149530556	149679909	RNF13	+	protein_coding	chr3	149498062	149686172	ANKUB1	-	processed_transcript	149370	opposite	10540_ID	chr3	149530557	149679909	149353	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
666	ENST00000347538.2	ENST00000624914.3_1	chr20	61162118	61162220	MIR133A2	+	miRNA	chr20	61147659	61167971	MIR1-1HG	+	lncRNA	102	same	8083_ID	chr20	61162119	61162220	102	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
694	ENST00000356140.10_2	ENST00000392929.6_4	chr2	135596185	135659604	ACMSD	+	protein_coding	chr2	135493033	135676240	CCNT2-AS1	-	lncRNA	63419	opposite	4326_ID	chr2	135596186	135659604	63419	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
697	ENST00000356972.1_1	ENST00000667608.1_3	chr5	147549295	147554961	SPINK14	+	protein_coding	chr5	147467792	147763432	AC011346.1	-	lncRNA	5666	opposite	12531_ID	chr5	147549296	147554961	5666	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
707	ENST00000358246.5_2	ENST00000532756.1_1	chr11	60145957	60163424	MS4A7	+	protein_coding	chr11	60102443	60164069	MS4A6E	+	nonsense_mediated_decay	17467	same	9173_ID	chr11	60145958	60163424	17467	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
717	ENST00000359345.5_4	ENST00000626479.1_1	chr1	41481268	41488909	SLFNL1	-	protein_coding	chr1	41480261	41509562	SLFNL1-AS1	+	lncRNA	7641	opposite	12111_ID	chr1	41481269	41488909	7641	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
726	ENST00000360202.10_3	ENST00000591817.1_3	chr19	36347812	36358038	KIRREL2	+	protein_coding	chr19	36342552	36360189	NPHS1	-	processed_transcript	11276	opposite	7447_ID	chr19	36347813	36358038	10226	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
730	ENST00000360464.4_3	ENST00000523380.5_1	chr8	82437215	82443613	FABP12	-	protein_coding	chr8	82433852	82445510	AC023644.1	+	lncRNA	6398	opposite	6953_ID	chr8	82437216	82443613	6398	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
732	ENST00000360535.9_4	ENST00000586962.1_1	chr19	36505561	36523775	CLIP3	-	protein_coding	chr19	36505409	36536874	AC002116.2	+	lncRNA	18684	opposite	6665_ID	chr19	36505562	36523775	18214	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
739	ENST00000361066.7_4	ENST00000431955.1_1	chr1	110276558	110283660	GSTM3	-	protein_coding	chr1	110268441	110317874	AL158847.1	+	lncRNA	7107	opposite	7196_ID	chr1	110276559	110283660	7102	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
743	ENST00000361952.5_2	ENST00000585073.1_5	chr17	33288558	33290796	ZNF830	+	protein_coding	chr17	33269577	33308097	CCT6B	-	protein_coding	2238	opposite	13077_ID	chr17	33288559	33290796	2238	*	+	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
745	ENST00000362032.6_2	ENST00000483843.6_3	chr3	151591430	151602407	SUCNR1	+	protein_coding	chr3	151469230	151645956	AADACL2-AS1	-	lncRNA	10977	opposite	12577_ID	chr3	151591431	151602407	10977	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
749	ENST00000362105.1	ENST00000655138.1_3	chr11	122017228	122017301	MIRLET7A2	-	miRNA	chr11	121959929	122324427	MIR100HG	-	lncRNA	73	same	9128_ID	chr11	122017229	122017301	73	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
763	ENST00000362153.1	ENST00000357429.10_4	chr7	1062568	1062662	MIR339	-	miRNA	chr7	1036621	1177893	C7orf50	-	protein_coding	94	same	8329_ID	chr7	1062569	1062662	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
783	ENST00000362202.1	ENST00000652620.1_1	chr9	96938628	96938715	MIRLET7F1	+	miRNA	chr9	96928547	96963162	MIRLET7A1HG	+	lncRNA	87	same	9136_ID	chr9	96938629	96938715	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
785	ENST00000362207.1	ENST00000526615.6_2	chr11	43602943	43603033	MIR129-2	+	miRNA	chr11	43577985	43694943	AC068205.1	+	lncRNA	90	same	8054_ID	chr11	43602944	43603033	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
804	ENST00000362263.1	ENST00000652620.1_1	chr9	96941115	96941202	MIRLET7D	+	miRNA	chr9	96928547	96963162	MIRLET7A1HG	+	lncRNA	87	same	9133_ID	chr9	96941116	96941202	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
813	ENST00000362298.1	ENST00000430772.6_4	chrX	73507120	73507192	MIR374A	-	miRNA	chrX	73184043	73513368	FTX	-	lncRNA	72	same	8399_ID	chrX	73507121	73507192	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
846	ENST00000362530.1	ENST00000295190.9_4	chr2	230922944	230923040	RNY4P19	-	misc_RNA	chr2	230899697	230933640	SLC16A14	-	protein_coding	96	same	11852_ID	chr2	230922945	230923040	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
912	ENST00000362935.1	ENST00000360864.9_2	chr20	62540307	62540472	RNU1-134P	+	snRNA	chr20	62526478	62567364	DNAJC5	+	protein_coding	165	same	10564_ID	chr20	62540308	62540472	165	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
943	ENST00000363159.1	ENST00000419511.1_3	chr2	219780905	219781009	RNU6-642P	-	snRNA	chr2	219765532	219795358	LINC01494	-	lncRNA	104	same	11401_ID	chr2	219780906	219781009	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
944	ENST00000363163.1	ENST00000665303.1_3	chr1	222010675	222010779	RNU6-403P	-	snRNA	chr1	221993183	222014031	LINC01655	-	lncRNA	104	same	11212_ID	chr1	222010676	222010779	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
946	ENST00000363178.1	ENST00000652628.1_3	chr2	79109753	79109860	RNU6-812P	+	snRNA	chr2	79107838	79158272	AC092604.1	-	lncRNA	107	opposite	11520_ID	chr2	79109754	79109860	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
966	ENST00000363282.1	ENST00000610881.4_3	chr11	74679233	74679337	RNU6-216P	-	snRNA	chr11	74660291	74690076	SPCS2	+	protein_coding	104	opposite	11080_ID	chr11	74679234	74679337	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
975	ENST00000363334.1	ENST00000571404.5_4	chr16	3136143	3136301	RNU1-22P	+	snRNA	chr16	3126911	3137101	AC108134.3	-	lncRNA	158	opposite	10573_ID	chr16	3136144	3136301	158	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
979	ENST00000363348.1	ENST00000399169.8_4	chr10	70606560	70606667	RNU6-697P	+	snRNA	chr10	70587297	70655188	STOX1	+	protein_coding	107	same	11437_ID	chr10	70606561	70606667	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
985	ENST00000363380.1	ENST00000651019.1_1	chr2	128074448	128074555	RNU6-1147P	+	snRNA	chr2	128051802	128132651	AC068282.1	+	lncRNA	107	same	10854_ID	chr2	128074449	128074555	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
997	ENST00000363468.1	ENST00000508038.1_1	chr4	41773961	41774120	RNU1-49P	-	snRNA	chr4	41750309	41826136	PHOX2B-AS1	+	lncRNA	159	opposite	10587_ID	chr4	41773962	41774120	159	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1009	ENST00000363502.1	ENST00000474851.1_3	chr3	116683958	116684074	RNU5E-8P	-	snRNA	chr3	115738361	116858236	LSAMP	-	protein_coding	116	same	10750_ID	chr3	116683959	116684074	116	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
1027	ENST00000363592.1	ENST00000644559.1_1	chr5	86716157	86716264	RNU6-727P	-	snRNA	chr5	86708158	86795157	AC018754.1	+	lncRNA	107	opposite	11457_ID	chr5	86716158	86716264	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1041	ENST00000363660.1	ENST00000600027.5_1	chr19	50000976	50001063	SNORD35B	+	snoRNA	chr19	49999621	50002946	RPS11	+	retained_intron	87	same	12400_ID	chr19	50000977	50001063	87	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	3	4
1075	ENST00000363833.1	ENST00000462792.2_4	chr3	87791692	87791799	RNU6-873P	-	snRNA	chr3	87690561	87842779	AC108749.1	-	lncRNA	107	same	11573_ID	chr3	87791693	87791799	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1131	ENST00000364105.1	ENST00000670361.1_1	chr1	8266493	8266657	RNU1-7P	-	snRNA	chr1	8261577	8275267	LINC01714	+	lncRNA	164	opposite	10602_ID	chr1	8266494	8266657	164	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
1148	ENST00000364249.1	ENST00000638717.1_4	chr6	145784373	145784535	RNU1-33P	-	snRNA	chr6	145703670	146056417	EPM2A	-	protein_coding	162	same	10580_ID	chr6	145784374	145784535	162	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
1154	ENST00000364285.1	ENST00000376131.8_4	chr13	102431233	102431398	RNU1-24P	-	snRNA	chr13	102363153	103054124	FGF14	-	protein_coding	165	same	10574_ID	chr13	102431234	102431398	165	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1254	ENST00000364773.1	ENST00000453773.5_3	chr7	75573099	75573234	SNORA14A	+	snoRNA	chr7	75528517	75609711	POR	+	protein_coding	135	same	12159_ID	chr7	75573100	75573234	135	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1266	ENST00000364820.1	ENST00000376131.8_4	chr13	102669302	102669419	RNY1P2	-	misc_RNA	chr13	102363153	103054124	FGF14	-	protein_coding	117	same	11831_ID	chr13	102669303	102669419	117	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1272	ENST00000364877.1	ENST00000469183.5_2	chr7	7946149	7946255	RNU6-534P	+	snRNA	chr7	7680382	8043683	AC007161.3	+	lncRNA	106	same	11317_ID	chr7	7946150	7946255	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
1275	ENST00000364882.1	ENST00000658952.1_1	chr4	117760434	117760541	RNU6-119P	+	snRNA	chr4	117675608	117842948	AC093765.2	+	lncRNA	107	same	10904_ID	chr4	117760435	117760541	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1304	ENST00000365040.1	ENST00000666145.1_1	chr5	103434574	103434739	RNU1-140P	+	snRNA	chr5	103415619	103741822	LINC02163	+	lncRNA	165	same	10566_ID	chr5	103434575	103434739	165	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1307	ENST00000365061.1	ENST00000654463.1_1	chr4	178378264	178378382	RNA5SP172	-	rRNA	chr4	178363672	178597183	AC078881.1	+	lncRNA	118	opposite	10508_ID	chr4	178378265	178378382	118	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1312	ENST00000365085.1	ENST00000520388.5_3	chr5	78466056	78466158	RNY3P1	-	misc_RNA	chr5	78351676	78531861	DMGDH	-	processed_transcript	102	same	11837_ID	chr5	78466057	78466158	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1318	ENST00000365146.1	ENST00000321276.8_2	chr2	223363009	223363117	RNU6-619P	+	snRNA	chr2	223289261	223427340	SGPP2	+	protein_coding	108	same	11384_ID	chr2	223363010	223363117	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
1336	ENST00000365242.1	ENST00000655917.1_1	chr8	96611341	96611447	RNU6-690P	+	snRNA	chr8	96281062	96815049	C8orf37-AS1	+	lncRNA	106	same	11434_ID	chr8	96611342	96611447	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1365	ENST00000365443.1	ENST00000665550.1_1	chr6	11503741	11503904	RNU1-64P	-	snRNA	chr6	11414868	11506598	AL445430.2	+	lncRNA	163	opposite	10594_ID	chr6	11503742	11503904	163	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
1379	ENST00000365553.1	ENST00000652628.1_3	chr2	79109572	79109678	RNU6-827P	+	snRNA	chr2	79107838	79158272	AC092604.1	-	lncRNA	106	opposite	11534_ID	chr2	79109573	79109678	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1383	ENST00000365559.1	ENST00000628607.2_2	chr2	128229809	128229991	RNU4-48P	+	snRNA	chr2	128225301	128272199	AC010976.1	+	lncRNA	182	same	10685_ID	chr2	128229810	128229991	182	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
1397	ENST00000365662.1	ENST00000272645.9_4	chr2	128602809	128602915	RNU6-395P	+	snRNA	chr2	128601126	128615729	POLR2D	-	protein_coding	106	opposite	11202_ID	chr2	128602810	128602915	106	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
1399	ENST00000365696.2	ENST00000430772.6_4	chrX	73438211	73438296	MIR421	-	miRNA	chrX	73184043	73513368	FTX	-	lncRNA	85	same	8450_ID	chrX	73438212	73438296	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
1431	ENST00000367755.9_2	ENST00000669750.1_3	chr1	171060045	171086959	FMO3	+	protein_coding	chr1	170717713	171220947	BX284613.2	-	lncRNA	26918	opposite	7047_ID	chr1	171060046	171086959	26914	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1432	ENST00000367759.8_4	ENST00000669750.1_3	chr1	170904611	171033906	MROH9	+	protein_coding	chr1	170717713	171220947	BX284613.2	-	lncRNA	129295	opposite	9160_ID	chr1	170904612	171033906	129295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1434	ENST00000367967.7_5	ENST00000537821.2_1	chr1	161511585	161520381	FCGR3A	-	protein_coding	chr1	161482965	161574889	AL590385.2	+	lncRNA	8979	opposite	7011_ID	chr1	161511586	161520381	8796	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1442	ENST00000368599.4_2	ENST00000368602.4_4	chr6	116832801	116845951	CALHM5	+	protein_coding	chr6	116816151	116866847	TRAPPC3L	-	protein_coding	13150	opposite	6541_ID	chr6	116832802	116845951	13150	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1460	ENST00000370257.1_1	ENST00000463705.5_3	chr20	61991339	62002529	AL121827.1	+	lncRNA	chr20	61975420	62009345	CHRNA4	-	processed_transcript	11190	opposite	4757_ID	chr20	61991340	62002529	11190	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1474	ENST00000371086.3_1	ENST00000478138.1_3	chr1	64012752	64016307	DLEU2L	+	lncRNA	chr1	63955773	64059392	ITGB3BP	-	processed_transcript	3555	opposite	6810_ID	chr1	64012753	64016307	3555	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1479	ENST00000371402.5_4	ENST00000553843.5_1	chrX	119206228	119211655	RHOXF2B	-	protein_coding	chrX	119170200	119280760	RHOXF1-AS1	+	lncRNA	5427	opposite	9750_ID	chrX	119206229	119211655	5427	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1489	ENST00000372017.4_2	ENST00000609457.5_5	chr10	88718355	88723015	SNCG	+	protein_coding	chr10	88703628	88729069	MMRN2	-	protein_coding	4660	opposite	12144_ID	chr10	88718356	88723015	4660	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1497	ENST00000372586.4_3	ENST00000482796.1_3	chr9	131707808	131709882	DOLK	-	protein_coding	chr9	131703756	131719300	AL672142.1	+	protein_coding	2074	opposite	6836_ID	chr9	131707809	131709882	2074	*	-	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1498	ENST00000372643.4_2	ENST00000326000.2_4	chr20	44258377	44259835	WFDC10A	+	protein_coding	chr20	44236577	44259923	WFDC9	-	protein_coding	1458	opposite	12911_ID	chr20	44258378	44259835	1458	*	+	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1503	ENST00000373161.6_2	ENST00000482853.5_6	chr6	41010205	41012076	TSPO2	+	protein_coding	chr6	41001365	41038956	OARD1	-	nonsense_mediated_decay	1871	opposite	12801_ID	chr6	41010206	41012076	1871	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1507	ENST00000373366.3_2	ENST00000426886.1_3	chr1	35246814	35251965	GJB3	+	protein_coding	chr1	35178337	35325336	SMIM12	-	nonsense_mediated_decay	5156	opposite	7123_ID	chr1	35246815	35251965	5151	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
1511	ENST00000373826.3_2	ENST00000471683.5_3	chr1	28918711	28921955	RAB42	+	protein_coding	chr1	28915834	28944542	TAF12	-	processed_transcript	3244	opposite	9690_ID	chr1	28918712	28921955	3244	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1519	ENST00000374433.7_4	ENST00000458063.1_1	chr10	44139309	44144329	ZNF32	-	protein_coding	chr10	44124264	44170151	ZNF32-AS3	+	lncRNA	5022	opposite	13034_ID	chr10	44139310	44144329	5020	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1525	ENST00000375281.4_2	ENST00000671292.1_3	chr2	171571846	171574588	SP5	+	protein_coding	chr2	171556877	171627283	AC007405.1	-	lncRNA	2742	opposite	12499_ID	chr2	171571847	171574588	2742	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
1543	ENST00000376271.1	ENST00000337080.8_3	chr19	56662313	56663250	AC024580.1	-	protein_coding	chr19	56652655	56672262	ZNF444	+	protein_coding	937	opposite	2020_ID	chr19	56662314	56663250	937	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1580	ENST00000379380.9_2	ENST00000506207.2_3	chr5	130506636	130541121	LYRM7	+	protein_coding	chr5	130495166	130560161	HINT1	-	processed_transcript	34485	opposite	7893_ID	chr5	130506637	130541121	34485	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
1589	ENST00000379946.2_4	ENST00000412903.1_5	chr11	5862185	5863182	OR52E6	-	protein_coding	chr11	5699549	5959849	TRIM5	-	protein_coding	1025	same	9444_ID	chr11	5862186	5863182	997	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
1606	ENST00000380266.4_4	ENST00000348031.6_4	chr20	3127164	3140511	FASTKD5	-	protein_coding	chr20	3088218	3140842	UBOX5	-	protein_coding	13347	same	7005_ID	chr20	3127165	3140511	13347	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
1627	ENST00000381689.4_2	ENST00000659257.1_3	chr10	88985256	88996665	NUTM2A	+	protein_coding	chr10	88961403	89102259	NUTM2A-AS1	-	lncRNA	11461	opposite	9318_ID	chr10	88985257	88996665	11409	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
1634	ENST00000382192.7_1	ENST00000674022.1_2	chr16	3162560	3170518	ZNF205	+	protein_coding	chr16	3150696	3193735	ZNF213-AS1	-	lncRNA	7958	opposite	13028_ID	chr16	3162561	3170518	7958	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
1638	ENST00000382641.1_3	ENST00000616469.4_2	chr22	27063655	27068617	Z99774.1	-	lncRNA	chr22	27053431	27072438	MIAT	+	lncRNA	4962	opposite	12991_ID	chr22	27063656	27068617	4962	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
1643	ENST00000383820.9_4	ENST00000455274.5_1	chr3	9879532	9885700	RPUSD3	-	protein_coding	chr3	9860986	9896822	TTLL3	+	protein_coding	6754	opposite	11964_ID	chr3	9879533	9885700	6168	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
1663	ENST00000383893.1	ENST00000528016.1_4	chr1	76252756	76252835	SNORD45C	+	snoRNA	chr1	76215181	76253260	ACADM	+	nonsense_mediated_decay	79	same	12410_ID	chr1	76252757	76252835	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
1665	ENST00000383896.1	ENST00000283928.10_4	chr7	28157731	28157838	RNU6-979P	-	snRNA	chr7	27870195	28220414	JAZF1	-	protein_coding	107	same	11649_ID	chr7	28157732	28157838	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1707	ENST00000383998.1	ENST00000373652.7_1	chr2	230838030	230838137	RNU6-1027P	+	snRNA	chr2	230787017	230877825	FBXO36	+	protein_coding	107	same	10779_ID	chr2	230838031	230838137	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
1713	ENST00000384017.1	ENST00000274341.9_4	chr5	82999266	82999362	RNU6-620P	+	snRNA	chr5	82933623	83016674	HAPLN1	-	protein_coding	96	opposite	11385_ID	chr5	82999267	82999362	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1726	ENST00000384051.1	ENST00000255759.11_4	chr16	15971019	15971123	RNU6-213P	-	snRNA	chr16	15959575	15982460	CEP20	-	protein_coding	104	same	11078_ID	chr16	15971020	15971123	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1741	ENST00000384106.1	ENST00000565684.5_6	chr16	57864439	57864546	RNU6-20P	-	snRNA	chr16	57805582	57880439	KIFC3	-	protein_coding	107	same	11076_ID	chr16	57864440	57864546	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1747	ENST00000384127.1	ENST00000658247.1_1	chr13	61363693	61363795	RNY3P5	+	misc_RNA	chr13	61193158	61750892	LINC00378	+	lncRNA	102	same	11841_ID	chr13	61363694	61363795	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
1758	ENST00000384148.1	ENST00000511642.5_3	chr6	41986145	41986252	RNU6-761P	-	snRNA	chr6	41902671	42018095	CCND3	-	protein_coding	107	same	11482_ID	chr6	41986146	41986252	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1764	ENST00000384188.1	ENST00000634588.1_1	chr2	49460932	49461038	RNU6-439P	-	snRNA	chr2	49036478	49646151	AC009975.1	+	lncRNA	106	opposite	11243_ID	chr2	49460933	49461038	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
1772	ENST00000384196.1	ENST00000374431.7_4	chr9	113665616	113665725	RNU6-432P	+	snRNA	chr9	113635542	113800323	LPAR1	-	protein_coding	109	opposite	11235_ID	chr9	113665617	113665725	109	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
1778	ENST00000384208.1	ENST00000302291.8_5	chr1	23489196	23489303	RNU6-514P	+	snRNA	chr1	23410522	23504301	LUZP1	-	protein_coding	107	opposite	11299_ID	chr1	23489197	23489303	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
1783	ENST00000384217.1	ENST00000590800.6_4	chr18	45696154	45696261	RNU6-708P	-	snRNA	chr18	45553042	45935754	ZBTB7C	-	protein_coding	107	same	11443_ID	chr18	45696155	45696261	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1788	ENST00000384227.1	ENST00000225603.9_5	chr17	46166039	46166146	RNU6-1201P	-	snRNA	chr17	46147420	46178840	CBX1	-	protein_coding	107	same	10905_ID	chr17	46166040	46166146	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1796	ENST00000384270.1	ENST00000502645.2_1	chr5	95545824	95545931	RNU6-524P	-	snRNA	chr5	95297704	95966789	AC104123.1	+	lncRNA	107	opposite	11308_ID	chr5	95545825	95545931	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1816	ENST00000384315.1	ENST00000567404.5_2	chr16	21653614	21653721	RNU6-196P	+	snRNA	chr16	21608542	21666645	METTL9	+	protein_coding	107	same	11063_ID	chr16	21653615	21653721	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
1835	ENST00000384396.1	ENST00000660243.1_1	chr10	4557143	4557249	RNU6-163P	+	snRNA	chr10	4539640	4557436	AC022535.2	+	lncRNA	106	same	11041_ID	chr10	4557144	4557249	106	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	4	4
1836	ENST00000384399.1	ENST00000524047.5_1	chr8	10333732	10333839	RNU6-729P	+	snRNA	chr8	10332074	10339484	LINCR-0001	+	lncRNA	107	same	11458_ID	chr8	10333733	10333839	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1842	ENST00000384421.1	ENST00000665121.1_3	chr15	88017413	88017520	RNU6-185P	-	snRNA	chr15	87869059	88247056	AC020687.1	-	lncRNA	107	same	11057_ID	chr15	88017414	88017520	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
1849	ENST00000384440.1	ENST00000423915.1_5	chr17	74333396	74333503	RNU6-24P	+	snRNA	chr17	74326632	74380602	PRPSAP1	-	protein_coding	107	opposite	11098_ID	chr17	74333397	74333503	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1854	ENST00000384446.1	ENST00000217909.8_2	chrX	118557704	118557868	RNU1-67P	+	snRNA	chrX	118533298	118588441	SLC25A43	+	protein_coding	164	same	10595_ID	chrX	118557705	118557868	164	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1855	ENST00000384452.1	ENST00000366607.5_4	chr1	235291117	235291252	SNORA14B	-	snoRNA	chr1	235272655	235292152	TOMM20	-	protein_coding	135	same	12160_ID	chr1	235291118	235291252	135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1869	ENST00000384491.1	ENST00000468762.3_4	chrX	113193201	113193367	RNU1-57P	+	snRNA	chrX	112859586	113302310	XACT	-	lncRNA	166	opposite	10591_ID	chrX	113193202	113193367	166	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
1870	ENST00000384492.1	ENST00000527633.6_4	chr11	82752505	82752640	SNORA70E	-	snoRNA	chr11	82684174	82782939	RAB30	-	protein_coding	135	same	12198_ID	chr11	82752506	82752640	135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1882	ENST00000384519.1	ENST00000567404.5_2	chr16	21653374	21653481	RNU6-1005P	+	snRNA	chr16	21608542	21666645	METTL9	+	protein_coding	107	same	10759_ID	chr16	21653375	21653481	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
1913	ENST00000384593.1	ENST00000648073.1_1	chr3	153189254	153189360	RNU6-901P	-	snRNA	chr3	153158647	153220482	LINC02877	+	lncRNA	106	opposite	11596_ID	chr3	153189255	153189360	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
1917	ENST00000384600.1	ENST00000499662.3_4	chr13	28402899	28403006	RNU6-73P	+	snRNA	chr13	28393512	28491435	PLUT	-	lncRNA	107	opposite	11467_ID	chr13	28402900	28403006	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
1960	ENST00000384726.1	ENST00000648350.1_5	chr22	42075714	42075821	RNU6-476P	+	snRNA	chr22	42070820	42086466	SNU13	-	protein_coding	107	opposite	11268_ID	chr22	42075715	42075821	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
1995	ENST00000384821.1	ENST00000636248.2_5	chr17	61021575	61021673	MIR633	+	miRNA	chr17	60988043	61045910	AC005972.3	-	lncRNA	98	opposite	9037_ID	chr17	61021576	61021673	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2006	ENST00000384837.1	ENST00000649591.1_6	chr14	101348219	101348343	MIR433	+	miRNA	chr14	101346089	101370059	RTL1	-	protein_coding	124	opposite	8523_ID	chr14	101348220	101348343	124	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
2015	ENST00000384846.1	ENST00000502645.2_1	chr5	95414841	95414916	MIR583	+	miRNA	chr5	95297704	95966789	AC104123.1	+	lncRNA	75	same	8985_ID	chr5	95414842	95414916	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2027	ENST00000384857.1	ENST00000639829.1_1	chrX	146318430	146318545	MIR508	-	miRNA	chrX	146262581	146353412	AL589669.1	+	lncRNA	115	opposite	8825_ID	chrX	146318431	146318545	115	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2032	ENST00000384865.1	ENST00000586239.5_5	chr7	136587913	136588041	MIR490	+	miRNA	chr7	136370305	136849020	AC009264.1	-	lncRNA	128	opposite	8796_ID	chr7	136587914	136588041	128	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
2035	ENST00000384869.1	ENST00000543510.1_3	chr11	61559966	61560033	MIR611	-	miRNA	chr11	61556602	61560274	TMEM258	-	protein_coding	67	same	9012_ID	chr11	61559967	61560033	67	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	4
2039	ENST00000384873.1	ENST00000326912.8_1	chr3	49058050	49058142	MIR191	-	miRNA	chr3	49057891	49060720	NDUFAF3	+	protein_coding	92	opposite	8140_ID	chr3	49058051	49058142	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2043	ENST00000384876.1	ENST00000649591.1_6	chr14	101349315	101349412	MIR127	+	miRNA	chr14	101346089	101370059	RTL1	-	protein_coding	97	opposite	8027_ID	chr14	101349316	101349412	97	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
2056	ENST00000384895.1	ENST00000502271.5_3	chr5	53247333	53247429	MIR581	-	miRNA	chr5	53179774	53606412	ARL15	-	protein_coding	96	same	8983_ID	chr5	53247334	53247429	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
2058	ENST00000384898.1	ENST00000669700.1_1	chr19	4770681	4770791	MIR7-3	+	miRNA	chr19	4769144	4785089	MIR7-3HG	+	lncRNA	110	same	9074_ID	chr19	4770682	4770791	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2067	ENST00000384911.1	ENST00000610261.6_3	chr4	65016	65125	Z95704.1	+	miRNA	chr4	53214	88096	ZNF595	+	protein_coding	109	same	12959_ID	chr4	65017	65125	109	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2102	ENST00000384998.1	ENST00000639829.1_1	chrX	146312237	146312361	MIR506	-	miRNA	chrX	146262581	146353412	AL589669.1	+	lncRNA	124	opposite	8823_ID	chrX	146312238	146312361	124	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2112	ENST00000385013.1	ENST00000319540.9_4	chr4	83674489	83674583	MIR575	-	miRNA	chr4	83550691	83719949	SCD5	-	protein_coding	94	same	8978_ID	chr4	83674490	83674583	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2130	ENST00000385037.1	ENST00000323037.5_2	chr7	30329409	30329506	MIR550A1	+	miRNA	chr7	30324212	30407305	ZNRF2	+	protein_coding	97	same	8924_ID	chr7	30329410	30329506	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2149	ENST00000385070.1	ENST00000643349.1_3	chr11	2155363	2155439	MIR483	-	miRNA	chr11	2150341	2170833	AC132217.2	-	protein_coding	76	same	8788_ID	chr11	2155364	2155439	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2157	ENST00000385082.1	ENST00000014914.6_3	chr12	13068762	13068852	MIR614	+	miRNA	chr12	13044495	13070871	GPRC5A	+	protein_coding	90	same	9014_ID	chr12	13068763	13068852	90	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
2160	ENST00000385085.1	ENST00000430772.6_4	chrX	73506938	73507044	MIR545	-	miRNA	chrX	73184043	73513368	FTX	-	lncRNA	106	same	8865_ID	chrX	73506939	73507044	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2172	ENST00000385136.2	ENST00000639829.1_1	chrX	146280561	146280645	MIR513B	-	miRNA	chrX	146262581	146353412	AL589669.1	+	lncRNA	84	opposite	8844_ID	chrX	146280562	146280645	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2173	ENST00000385138.1	ENST00000639829.1_1	chrX	146294980	146295109	MIR513A1	-	miRNA	chrX	146262581	146353412	AL589669.1	+	lncRNA	129	opposite	8842_ID	chrX	146294981	146295109	129	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2184	ENST00000385193.1	ENST00000581915.5_1	chr17	30677127	30677221	MIR632	+	miRNA	chr17	30651449	30687719	AC005899.4	+	lncRNA	94	same	9036_ID	chr17	30677128	30677221	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2192	ENST00000385205.1	ENST00000480282.5_3	chr3	111831647	111831745	MIR567	+	miRNA	chr3	111805181	111847596	C3orf52	+	protein_coding	98	same	8951_ID	chr3	111831648	111831745	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2195	ENST00000385207.1	ENST00000649591.1_6	chr14	101351033	101351125	MIR136	+	miRNA	chr14	101346089	101370059	RTL1	-	protein_coding	92	opposite	8092_ID	chr14	101351034	101351125	92	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
2201	ENST00000385214.1	ENST00000417354.3_4	chr1	172107937	172108047	MIR214	-	miRNA	chr1	172107536	172113980	DNM3OS	-	lncRNA	110	same	8180_ID	chr1	172107938	172108047	110	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
2215	ENST00000385234.1	ENST00000639829.1_1	chrX	146312501	146312595	MIR507	-	miRNA	chrX	146262581	146353412	AL589669.1	+	lncRNA	94	opposite	8824_ID	chrX	146312502	146312595	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2217	ENST00000385236.1	ENST00000655138.1_3	chr11	121970464	121970552	MIR125B1	-	miRNA	chr11	121959929	122324427	MIR100HG	-	lncRNA	88	same	8013_ID	chr11	121970465	121970552	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
2223	ENST00000385247.1	ENST00000518570.2_2	chr6	119390211	119390308	MIR548B	-	miRNA	chr6	119255934	119503910	AL137009.1	+	lncRNA	97	opposite	8891_ID	chr6	119390212	119390308	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2225	ENST00000385249.1	ENST00000639829.1_1	chrX	146307343	146307470	MIR513A2	-	miRNA	chrX	146262581	146353412	AL589669.1	+	lncRNA	127	opposite	8843_ID	chrX	146307344	146307470	127	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
2230	ENST00000385259.1	ENST00000655138.1_3	chr11	122022936	122023016	MIR100	-	miRNA	chr11	121959929	122324427	MIR100HG	-	lncRNA	80	same	7954_ID	chr11	122022937	122023016	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
2234	ENST00000385265.1	ENST00000639829.1_1	chrX	146342049	146342143	MIR509-1	-	miRNA	chrX	146262581	146353412	AL589669.1	+	lncRNA	94	opposite	8829_ID	chrX	146342050	146342143	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2236	ENST00000385266.1	ENST00000649591.1_6	chr14	101347343	101347457	MIR431	+	miRNA	chr14	101346089	101370059	RTL1	-	protein_coding	114	opposite	8504_ID	chr14	101347344	101347457	114	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
2265	ENST00000386307.1	ENST00000620594.2_2	chr20	47895476	47895565	SNORD12C	+	snoRNA	chr20	47895178	47916137	ZFAS1	+	lncRNA	89	same	12370_ID	chr20	47895477	47895565	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2278	ENST00000388931.7_3	ENST00000612170.1_3	chr9	140145712	140147935	STPG3	+	protein_coding	chr9	140144670	140147949	STPG3-AS1	-	lncRNA	2223	opposite	12572_ID	chr9	140145713	140147935	2223	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
2286	ENST00000390142.1	ENST00000526615.6_2	chr11	43581205	43581303	MIR670	+	miRNA	chr11	43577985	43694943	AC068205.1	+	lncRNA	98	same	9069_ID	chr11	43581206	43581303	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
2294	ENST00000390184.1	ENST00000663862.1_1	chr7	88269834	88269941	AC006988.1	+	miRNA	chr7	88049481	88374259	AC002069.2	+	lncRNA	107	same	491_ID	chr7	88269835	88269941	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2295	ENST00000390185.1	ENST00000558435.5_1	chr15	45725247	45725327	MIR147B	+	miRNA	chr15	45722776	45740959	C15orf48	+	protein_coding	80	same	8101_ID	chr15	45725248	45725327	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
2330	ENST00000390724.1	ENST00000639829.1_1	chrX	146340277	146340368	MIR509-2	-	miRNA	chrX	146262581	146353412	AL589669.1	+	lncRNA	91	opposite	8830_ID	chrX	146340278	146340368	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2331	ENST00000390725.1	ENST00000639829.1_1	chrX	146341169	146341244	MIR509-3	-	miRNA	chrX	146262581	146353412	AL589669.1	+	lncRNA	75	opposite	8831_ID	chrX	146341170	146341244	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2335	ENST00000390738.1	ENST00000430772.6_4	chrX	73438381	73438453	MIR374B	-	miRNA	chrX	73184043	73513368	FTX	-	lncRNA	72	same	8400_ID	chrX	73438382	73438453	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
2353	ENST00000390812.1	ENST00000206262.2_5	chr6	153373596	153373679	AL080276.1	+	miRNA	chr6	153325593	153452417	RGS17	-	protein_coding	83	opposite	4677_ID	chr6	153373597	153373679	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2392	ENST00000391002.1	ENST00000620594.2_2	chr20	47897219	47897309	SNORD12	+	snoRNA	chr20	47895178	47916137	ZFAS1	+	lncRNA	90	same	12361_ID	chr20	47897220	47897309	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2398	ENST00000391052.1	ENST00000670992.1_3	chr18	37258483	37258586	RNU6-1242P	-	snRNA	chr18	36786880	37380285	MIR924HG	-	lncRNA	103	same	10942_ID	chr18	37258484	37258586	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
2402	ENST00000391064.1	ENST00000659328.1_1	chr1	73183345	73183452	RNU6-1246P	-	snRNA	chr1	73023618	73219455	AL513166.1	+	lncRNA	107	opposite	10943_ID	chr1	73183346	73183452	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
2444	ENST00000391216.1	ENST00000652296.1_3	chr14	29945989	29946118	RNU11-5P	+	snRNA	chr14	29885061	29969666	AL158058.2	-	lncRNA	129	opposite	10616_ID	chr14	29945990	29946118	129	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2445	ENST00000391218.1	ENST00000225171.7_4	chr10	69568259	69568366	RNU6-1250P	+	snRNA	chr10	69556426	69597946	DNAJC12	-	protein_coding	107	opposite	10947_ID	chr10	69568260	69568366	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2456	ENST00000391305.1	ENST00000314138.11_2	chr11	8706985	8707116	SNORA45	+	snoRNA	chr11	8704338	8711419	RPL27A	+	protein_coding	131	same	12175_ID	chr11	8706986	8707116	131	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
2457	ENST00000391309.1	ENST00000468762.3_4	chrX	113260260	113260330	SNORD30	+	snoRNA	chrX	112859586	113302310	XACT	-	lncRNA	70	opposite	12394_ID	chrX	113260261	113260330	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2462	ENST00000391437.2_1	ENST00000659311.1_1	chr10	6392277	6394724	LINC02656	+	lncRNA	chr10	6313131	6395789	LINC02649	+	lncRNA	2447	same	7789_ID	chr10	6392278	6394724	2447	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
2467	ENST00000391625.2_1	ENST00000414287.5_3	chr22	49942328	49950121	Z97192.1	+	lncRNA	chr22	49808172	50051152	C22orf34	-	lncRNA	7793	opposite	12961_ID	chr22	49942329	49950121	7793	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2468	ENST00000391750.5_4	ENST00000448962.5_1	chr19	54720146	54727378	LILRB3	-	protein_coding	chr19	54704725	54752862	RPS9	+	nonsense_mediated_decay	7232	opposite	7524_ID	chr19	54720147	54727378	7232	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2472	ENST00000392451.6_2	ENST00000473363.3_6	chr1	155146262	155157447	TRIM46	+	protein_coding	chr1	155141884	155159748	AL713999.2	-	protein_coding	11185	opposite	12782_ID	chr1	155146263	155157447	11185	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2474	ENST00000392690.3_1	ENST00000430546.2_4	chr2	168725457	168730551	B3GALT1	+	protein_coding	chr2	168671266	168797688	B3GALT1-AS1	-	lncRNA	5094	opposite	6386_ID	chr2	168725458	168730551	5094	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
2477	ENST00000393264.2_3	ENST00000414287.5_3	chr22	49965911	49969074	Z97192.2	-	lncRNA	chr22	49808172	50051152	C22orf34	-	lncRNA	3163	same	12962_ID	chr22	49965912	49969074	3163	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2478	ENST00000393316.8_4	ENST00000419536.1_1	chr1	114419437	114430203	BCL2L15	-	protein_coding	chr1	114399256	114443859	AP4B1-AS1	+	lncRNA	10766	opposite	6407_ID	chr1	114419438	114430203	10766	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2483	ENST00000394191.3_2	ENST00000508616.1_1	chr3	98025595	98031687	OR5H8	+	polymorphic_pseudogene	chr3	97952494	98176742	AC117473.1	+	lncRNA	6092	same	9458_ID	chr3	98025596	98031687	6092	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
2490	ENST00000394730.7_4	ENST00000510876.1_5	chr4	106629940	106768882	GSTCD	+	protein_coding	chr4	106621029	106817143	INTS12	-	protein_coding	138948	opposite	7191_ID	chr4	106629941	106768882	138942	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
2504	ENST00000396451.4_3	ENST00000500682.1_1	chr12	10525783	10544473	KLRK1	-	nonsense_mediated_decay	chr12	10516367	10551105	KLRK1-AS1	+	lncRNA	19522	opposite	7462_ID	chr12	10525784	10544473	18690	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	4
2536	ENST00000399087.2_3	ENST00000344415.9_3	chr17	19059039	19062206	AC007952.1	-	lncRNA	chr17	19030901	19062500	GRAPL	+	protein_coding	20977	opposite	671_ID	chr17	19059040	19062206	3167	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	4
2542	ENST00000399974.5_3	ENST00000575785.2_3	chr16	3420978	3422668	MTRNR2L4	-	protein_coding	chr16	3415111	3529550	AC025283.2	+	nonsense_mediated_decay	1690	opposite	9182_ID	chr16	3420979	3422668	1690	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2546	ENST00000400368.1_5	ENST00000622352.3_4	chr21	46011148	46012386	KRTAP10-6	-	protein_coding	chr21	45993600	46058201	KRTAP10-4	+	protein_coding	1238	opposite	7483_ID	chr21	46011149	46012386	1238	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2548	ENST00000400372.1_3	ENST00000622352.3_4	chr21	45999331	46000481	KRTAP10-5	-	protein_coding	chr21	45993600	46058201	KRTAP10-4	+	protein_coding	1150	opposite	7481_ID	chr21	45999332	46000481	1150	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2550	ENST00000400419.2_4	ENST00000618753.4_2	chr13	44717285	44735393	SMIM2	-	protein_coding	chr13	44684586	44814653	SMIM2-AS1	+	lncRNA	18108	opposite	12129_ID	chr13	44717286	44735393	18108	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	4
2553	ENST00000401043.3_1	ENST00000375713.1_1	chr13	112248355	112294426	LINC02337	+	lncRNA	chr13	112240637	112324955	AL359649.1	+	lncRNA	46071	same	7762_ID	chr13	112248356	112294426	46071	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
2555	ENST00000401105.1	ENST00000669750.1_3	chr1	171010487	171010581	BX284613.1	-	miRNA	chr1	170717713	171220947	BX284613.2	-	lncRNA	94	same	6451_ID	chr1	171010488	171010581	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2560	ENST00000401127.2	ENST00000360864.9_2	chr20	62551364	62551481	MIR941-1	+	miRNA	chr20	62526478	62567364	DNAJC5	+	protein_coding	117	same	9116_ID	chr20	62551365	62551481	117	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2572	ENST00000401179.1	ENST00000270458.3_6	chr19	54485560	54485651	MIR935	+	miRNA	chr19	54466293	54493469	CACNG8	+	protein_coding	91	same	9111_ID	chr19	54485561	54485651	91	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	4	4
2583	ENST00000401241.1	ENST00000370634.8_2	chrX	135633036	135633119	MIR934	+	miRNA	chrX	135614373	135638958	VGLL1	+	protein_coding	83	same	9110_ID	chrX	135633037	135633119	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
2608	ENST00000401322.2	ENST00000360864.9_2	chr20	62550833	62550950	MIR941-2	+	miRNA	chr20	62526478	62567364	DNAJC5	+	protein_coding	117	same	9117_ID	chr20	62550834	62550950	117	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2612	ENST00000401352.1	ENST00000639829.1_1	chrX	146271221	146271305	MIR513C	-	miRNA	chrX	146262581	146353412	AL589669.1	+	lncRNA	84	opposite	8845_ID	chrX	146271222	146271305	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2619	ENST00000401376.2	ENST00000360864.9_2	chr20	62551084	62551201	MIR941-3	+	miRNA	chr20	62526478	62567364	DNAJC5	+	protein_coding	117	same	9118_ID	chr20	62551085	62551201	117	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2622	ENST00000401670.1_3	ENST00000357429.10_4	chr7	1121843	1132517	GPER1	+	protein_coding	chr7	1036621	1177893	C7orf50	-	protein_coding	11608	opposite	7154_ID	chr7	1121844	1132517	10674	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
2626	ENST00000403437.2_4	ENST00000399342.6_1	chr17	10293638	10325267	MYH8	-	protein_coding	chr17	10286448	10441179	AC005323.2	+	lncRNA	31629	opposite	9204_ID	chr17	10293639	10325267	31629	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
2629	ENST00000404377.3_3	ENST00000432694.2_1	chr1	173009099	173020103	TNFSF18	-	protein_coding	chr1	172745044	173033155	AL031599.1	+	lncRNA	11004	opposite	12752_ID	chr1	173009100	173020103	11004	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
2636	ENST00000406846.7_3	ENST00000634588.1_1	chr2	49189295	49381654	FSHR	-	protein_coding	chr2	49036478	49646151	AC009975.1	+	lncRNA	192371	opposite	7087_ID	chr2	49189296	49381654	192359	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
2645	ENST00000408069.1	ENST00000601302.3_3	chr5	115378867	115378958	AC034236.1	-	miRNA	chr5	115368020	115395815	ARL14EPL	+	protein_coding	91	opposite	2265_ID	chr5	115378868	115378958	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2681	ENST00000408177.1	ENST00000544461.1_4	chr12	8519281	8519427	AC092865.1	+	miRNA	chr12	8448581	8549399	LINC00937	-	lncRNA	146	opposite	3162_ID	chr12	8519282	8519427	146	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
2727	ENST00000408306.2	ENST00000597363.5_1	chr19	40497850	40497946	AC007842.1	-	miRNA	chr19	40490040	40504210	ZNF546	+	processed_transcript	96	opposite	649_ID	chr19	40497851	40497946	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2736	ENST00000408336.1	ENST00000231461.10_4	chr5	100152185	100152269	MIR548P	-	miRNA	chr5	100142636	100238986	ST8SIA4	-	protein_coding	84	same	8913_ID	chr5	100152186	100152269	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
2750	ENST00000408361.1	ENST00000470729.5_3	chr2	133014538	133014653	MIR663B	-	miRNA	chr2	132905163	133015542	ANKRD30BL	-	processed_transcript	115	same	9067_ID	chr2	133014539	133014653	115	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2759	ENST00000408382.1	ENST00000622269.1_1	chr15	90838272	90838355	AC091167.1	+	miRNA	chr15	90809548	90857731	AC091167.6	+	protein_coding	83	same	2988_ID	chr15	90838273	90838355	83	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
2769	ENST00000408409.1	ENST00000650553.1_3	chr6	140981759	140981850	AL356137.1	-	miRNA	chr6	140896924	141219518	AL035446.2	-	lncRNA	91	same	5373_ID	chr6	140981760	140981850	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
2777	ENST00000408430.1	ENST00000530763.5_3	chr11	40781071	40781155	AC104387.1	+	miRNA	chr11	40135842	41481323	LRRC4C	-	protein_coding	84	opposite	3528_ID	chr11	40781072	40781155	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2789	ENST00000408463.1	ENST00000669750.1_3	chr1	171070868	171070947	MIR1295A	-	miRNA	chr1	170717713	171220947	BX284613.2	-	lncRNA	79	same	8063_ID	chr1	171070869	171070947	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2839	ENST00000408577.1	ENST00000651987.1_3	chr19	32417478	32417594	AC011456.1	+	miRNA	chr19	32288571	32436336	LINC01837	-	lncRNA	116	opposite	1218_ID	chr19	32417479	32417594	116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
2893	ENST00000408685.1	ENST00000503916.1_3	chr5	136869142	136869210	AC106775.1	+	miRNA	chr5	136448182	136934068	SPOCK1	-	processed_transcript	68	opposite	3646_ID	chr5	136869143	136869210	68	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2896	ENST00000408701.1	ENST00000412387.5_3	chr2	208133998	208134148	MIR1302-4	-	miRNA	chr2	208104844	208394519	AC009226.1	-	lncRNA	150	same	8070_ID	chr2	208133999	208134148	150	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
2920	ENST00000408750.2	ENST00000380099.4_2	chr13	33615488	33615580	AL161898.1	+	miRNA	chr13	33590560	33640280	KL	+	protein_coding	92	same	5180_ID	chr13	33615489	33615580	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2921	ENST00000408752.1	ENST00000535764.1_2	chr12	20125798	20125915	AC087237.1	+	miRNA	chr12	19928384	20162871	AC024901.1	+	lncRNA	117	same	2785_ID	chr12	20125799	20125915	117	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2926	ENST00000408775.2	ENST00000650379.1_3	chr1	87071952	87072040	AL356270.1	-	miRNA	chr1	87036946	87161994	CLCA4-AS1	-	lncRNA	88	same	5377_ID	chr1	87071953	87072040	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
2934	ENST00000408793.2	ENST00000477717.6_2	chr1	77473428	77473500	AC096951.1	+	miRNA	chr1	77333164	77533231	ST6GALNAC5	+	protein_coding	72	same	3299_ID	chr1	77473429	77473500	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
2951	ENST00000408827.1	ENST00000298352.4_3	chr14	77732560	77732633	MIR1260A	+	miRNA	chr14	77731825	77737655	NGB	-	protein_coding	73	opposite	8016_ID	chr14	77732561	77732633	73	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
2972	ENST00000408879.1	ENST00000618693.4_5	chr20	18591690	18591811	RNU6ATAC34P	-	snRNA	chr20	18548096	18724860	AL121900.1	+	protein_coding	121	opposite	11678_ID	chr20	18591691	18591811	121	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
2974	ENST00000408880.2	ENST00000551337.5_7	chr12	103320291	103320383	AC069227.1	-	miRNA	chr12	103271272	103352144	PAH	-	protein_coding	92	same	2473_ID	chr12	103320292	103320383	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
2978	ENST00000408916.1_2	ENST00000429289.5_1	chr7	143174965	143175889	TAS2R41	+	protein_coding	chr7	143104905	143220542	EPHA1-AS1	+	lncRNA	924	same	12617_ID	chr7	143174966	143175889	924	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
2993	ENST00000409749.7_3	ENST00000415226.1_1	chr2	237103514	237172988	ASB18	-	protein_coding	chr2	237076089	237203570	AC019068.1	+	lncRNA	69538	opposite	6353_ID	chr2	237103515	237172988	69474	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
2997	ENST00000409786.1_1	ENST00000671292.1_3	chr2	171568960	171571077	LINC01124	-	lncRNA	chr2	171556877	171627283	AC007405.1	-	lncRNA	2117	same	7605_ID	chr2	171568961	171571077	2117	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
3017	ENST00000410164.1	ENST00000414512.1_1	chr2	221341703	221341813	AC019051.1	-	miRNA	chr2	221315399	221569286	AC067956.1	+	lncRNA	110	opposite	1680_ID	chr2	221341704	221341813	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3039	ENST00000410265.1	ENST00000334464.7_4	chr10	119117866	119117967	AL359836.1	+	miRNA	chr10	119036784	119134951	PDZD8	-	protein_coding	101	opposite	5498_ID	chr10	119117867	119117967	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3082	ENST00000410433.1	ENST00000620594.2_2	chr20	47896855	47896946	SNORD12B	+	snoRNA	chr20	47895178	47916137	ZFAS1	+	lncRNA	91	same	12369_ID	chr20	47896856	47896946	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
3108	ENST00000410531.1	ENST00000585028.5_3	chr18	4988090	4988168	AP005138.1	-	miRNA	chr18	4775052	5004523	AP005203.1	-	lncRNA	78	same	6294_ID	chr18	4988091	4988168	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
3121	ENST00000410600.1	ENST00000623417.3_3	chrX	63005881	63005967	MIR1468	-	miRNA	chrX	62898375	63029154	ARHGEF9	-	protein_coding	86	same	8097_ID	chrX	63005882	63005967	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
3128	ENST00000410650.1	ENST00000281722.8_4	chr4	155708269	155708430	RNU2-66P	+	snRNA	chr4	155702423	155749965	RBM46	+	protein_coding	161	same	10651_ID	chr4	155708270	155708430	161	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3133	ENST00000410675.1	ENST00000622816.2_6	chr8	124275082	124275189	RNU6-628P	+	snRNA	chr8	124243838	124286524	ZHX1-C8orf76	-	protein_coding	107	opposite	11392_ID	chr8	124275083	124275189	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
3169	ENST00000410845.1	ENST00000559663.1_5	chr17	37702356	37702497	RNU6-233P	-	snRNA	chr17	37682119	37707394	CDK12	+	nonsense_mediated_decay	141	opposite	11089_ID	chr17	37702357	37702497	141	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
3182	ENST00000410927.1	ENST00000656694.1_3	chr4	178102595	178102895	RN7SKP136	+	misc_RNA	chr4	177765646	178222312	AC097518.2	-	lncRNA	300	opposite	9784_ID	chr4	178102596	178102895	300	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
3195	ENST00000411008.1	ENST00000453731.1_1	chr2	24268704	24268808	RNU6-370P	+	snRNA	chr2	24247022	24286191	MFSD2B	+	nonsense_mediated_decay	104	same	11186_ID	chr2	24268705	24268808	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
3198	ENST00000411028.1	ENST00000502271.5_3	chr5	53207849	53207953	RNU6-272P	-	snRNA	chr5	53179774	53606412	ARL15	-	protein_coding	104	same	11120_ID	chr5	53207850	53207953	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
3207	ENST00000411058.1	ENST00000555444.2_1	chr14	88979841	88980007	RNU4-22P	+	snRNA	chr14	88965677	88981846	AL162171.2	+	lncRNA	166	same	10665_ID	chr14	88979842	88980007	166	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
3214	ENST00000411107.1	ENST00000402676.7_4	chr6	151640769	151641085	RN7SKP268	+	misc_RNA	chr6	151561101	151679694	AKAP12	+	protein_coding	316	same	9867_ID	chr6	151640770	151641085	316	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
3220	ENST00000411127.1	ENST00000430214.1_1	chr13	88840113	88840175	AL354896.1	-	miRNA	chr13	88795121	88888337	LINC00373	+	lncRNA	62	opposite	5296_ID	chr13	88840114	88840175	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3256	ENST00000411365.1	ENST00000655917.1_1	chr8	96691065	96691143	AC116154.1	-	miRNA	chr8	96281062	96815049	C8orf37-AS1	+	lncRNA	78	opposite	3896_ID	chr8	96691066	96691143	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
3266	ENST00000411403.1	ENST00000645134.1_1	chr6	32320653	32320760	RNU6-603P	+	snRNA	chr6	32223104	32375540	TSBP1-AS1	+	lncRNA	107	same	11372_ID	chr6	32320654	32320760	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3309	ENST00000412143.1_3	ENST00000441888.7_3	chr6	31141511	31145676	PSORS1C3	-	lncRNA	chr6	31132113	31148508	POU5F1	-	protein_coding	4165	same	9671_ID	chr6	31141512	31145676	4165	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3327	ENST00000412497.1_1	ENST00000618770.1_3	chr20	1342265	1343229	AL136531.1	+	lncRNA	chr20	1298214	1373730	AL136531.2	-	processed_transcript	964	opposite	4920_ID	chr20	1342266	1343229	964	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
3329	ENST00000412526.5_1	ENST00000433310.6_4	chr21	29911639	29912677	LINC00161	+	lncRNA	chr21	29811666	30047170	AF165147.1	-	lncRNA	1038	opposite	7531_ID	chr21	29911640	29912677	1038	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
3331	ENST00000412602.1_3	ENST00000655921.1_3	chr6	134927436	134930575	AL078590.1	-	lncRNA	chr6	134846284	135010473	AL078590.2	-	lncRNA	3139	same	4664_ID	chr6	134927437	134930575	3139	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3333	ENST00000412643.1_3	ENST00000381051.6_1	chr22	46463235	46465771	AL121672.2	-	lncRNA	chr22	46449748	46501903	MIRLET7BHG	+	lncRNA	2536	opposite	4741_ID	chr22	46463236	46465771	2536	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3335	ENST00000412701.1_1	ENST00000511642.5_3	chr6	41997790	41999120	AL513008.1	+	lncRNA	chr6	41902671	42018095	CCND3	-	protein_coding	1330	opposite	5699_ID	chr6	41997791	41999120	1330	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3337	ENST00000412731.5_1	ENST00000472748.5_3	chr2	172778957	172848596	HAT1	+	nonsense_mediated_decay	chr2	172700878	172864762	SLC25A12	-	processed_transcript	69643	opposite	7217_ID	chr2	172778958	172848596	69639	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3349	ENST00000413129.1_3	ENST00000410107.5_1	chr6	10511268	10514779	AL139039.3	-	lncRNA	chr6	10492455	10627455	GCNT2	+	protein_coding	3511	opposite	5001_ID	chr6	10511269	10514779	3511	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
3393	ENST00000414339.2_1	ENST00000649886.1_3	chr1	43144405	43147330	AC098484.2	+	lncRNA	chr1	43124357	43147831	AC098484.4	-	lncRNA	2925	opposite	3338_ID	chr1	43144406	43147330	2925	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
3396	ENST00000414435.1_1	ENST00000217909.8_2	chrX	118556879	118557510	AC004000.1	+	lncRNA	chrX	118533298	118588441	SLC25A43	+	protein_coding	1200	same	90_ID	chrX	118556880	118557510	631	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
3403	ENST00000414621.1_2	ENST00000442800.1_1	chr7	30430523	30451991	LINC01176	+	lncRNA	chr7	30402015	30452118	AC006978.2	+	nonsense_mediated_decay	21491	same	7616_ID	chr7	30430524	30451991	21468	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	4
3431	ENST00000415082.1_3	ENST00000618753.4_2	chr13	44720605	44732358	SMIM2-IT1	-	lncRNA	chr13	44684586	44814653	SMIM2-AS1	+	lncRNA	11753	opposite	12131_ID	chr13	44720606	44732358	11753	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
3443	ENST00000415333.1_1	ENST00000406197.5_4	chr7	155302977	155311318	AC008060.2	+	lncRNA	chr7	155266900	155326533	CNPY1	-	protein_coding	8341	opposite	687_ID	chr7	155302978	155311318	8341	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3453	ENST00000415530.1_3	ENST00000426839.2_4	chr6	171045260	171046865	AL731684.1	-	lncRNA	chr6	170936390	171047291	AL672310.1	+	lncRNA	1605	opposite	5903_ID	chr6	171045261	171046865	1605	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
3458	ENST00000415656.1_1	ENST00000357429.10_4	chr7	1120498	1121814	AC091729.2	+	lncRNA	chr7	1036621	1177893	C7orf50	-	protein_coding	1316	opposite	3010_ID	chr7	1120499	1121814	1316	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
3478	ENST00000416341.1_1	ENST00000635422.1_1	chr10	80112353	80115857	AC010163.2	+	lncRNA	chr10	79938941	80302384	LINC00595	+	lncRNA	3504	same	1025_ID	chr10	80112354	80115857	3504	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3496	ENST00000416909.1_3	ENST00000376873.7_1	chr13	96131697	96186164	CLDN10-AS1	-	lncRNA	chr13	96085857	96232013	CLDN10	+	protein_coding	54467	opposite	6659_ID	chr13	96131698	96186164	54467	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3505	ENST00000417138.1_3	ENST00000645093.1_3	chr21	39378845	39382920	DSCR4-IT1	-	lncRNA	chr21	38995860	39493439	KCNJ6	-	protein_coding	4075	same	6851_ID	chr21	39378846	39382920	4075	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
3510	ENST00000417299.2_2	ENST00000605292.5_1	chr20	10677596	10734675	LINC01752	+	lncRNA	chr20	10653575	10972290	AL050403.2	+	lncRNA	57085	same	7670_ID	chr20	10677597	10734675	57079	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3519	ENST00000417481.1_1	ENST00000273067.5_4	chr2	217124317	217130853	AC012513.1	+	lncRNA	chr2	217122587	217237206	MARCHF4	-	protein_coding	6536	opposite	1400_ID	chr2	217124318	217130853	6536	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
3521	ENST00000417547.1_1	ENST00000662729.1_3	chr11	30252562	30256808	FSHB	+	protein_coding	chr11	30065599	30344535	AL358944.1	-	lncRNA	4248	opposite	7086_ID	chr11	30252563	30256808	4246	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
3549	ENST00000418426.1_1	ENST00000458063.1_1	chr10	44161115	44162453	AL645634.1	+	lncRNA	chr10	44124264	44170151	ZNF32-AS3	+	lncRNA	1338	same	5861_ID	chr10	44161116	44162453	1338	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3564	ENST00000418690.1_3	ENST00000605292.5_1	chr20	10733925	10745934	AL135937.1	-	lncRNA	chr20	10653575	10972290	AL050403.2	+	lncRNA	12009	opposite	4881_ID	chr20	10733926	10745934	12009	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3569	ENST00000418941.1_1	ENST00000357429.10_4	chr7	1068660	1083527	AC073957.1	+	lncRNA	chr7	1036621	1177893	C7orf50	-	protein_coding	14867	opposite	2557_ID	chr7	1068661	1083527	14867	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
3572	ENST00000418966.1_1	ENST00000458063.1_1	chr10	44141389	44143467	ZNF32-AS2	+	lncRNA	chr10	44124264	44170151	ZNF32-AS3	+	lncRNA	2078	same	13038_ID	chr10	44141390	44143467	2078	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3573	ENST00000419013.1_1	ENST00000450551.1_3	chr2	22600465	22704876	LINC01830	+	lncRNA	chr2	22156207	22753977	AC096570.1	-	lncRNA	104411	opposite	7686_ID	chr2	22600466	22704876	104411	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3586	ENST00000419446.1_3	ENST00000537821.2_1	chr1	161526079	161526868	AL590385.1	-	lncRNA	chr1	161482965	161574889	AL590385.2	+	lncRNA	789	opposite	5763_ID	chr1	161526080	161526868	789	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
3601	ENST00000419886.6_3	ENST00000476474.5_1	chr19	12125546	12146503	ZNF433	-	protein_coding	chr19	12098493	12157090	ZNF433-AS1	+	lncRNA	21010	opposite	13046_ID	chr19	12125547	12146503	20957	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	4
3608	ENST00000419944.1_1	ENST00000443687.5_4	chr7	19152096	19153894	AC003986.2	+	lncRNA	chr7	19060613	19156547	TWIST1	-	nonsense_mediated_decay	1798	opposite	88_ID	chr7	19152097	19153894	1798	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	4
3612	ENST00000420049.2_4	ENST00000664549.1_3	chr10	7138177	7139637	LINC02665	+	lncRNA	chr10	6866579	7160431	AL392086.3	-	lncRNA	1460	opposite	7790_ID	chr10	7138178	7139637	1460	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3625	ENST00000420382.1_1	ENST00000635322.1_1	chr1	151738184	151738865	AL589765.2	+	lncRNA	chr1	151735374	151743806	OAZ3	+	protein_coding	681	same	5737_ID	chr1	151738185	151738865	681	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3643	ENST00000420902.1_3	ENST00000414287.5_3	chr22	50006304	50009364	Z97192.3	-	lncRNA	chr22	49808172	50051152	C22orf34	-	lncRNA	3060	same	12963_ID	chr22	50006305	50009364	3060	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3701	ENST00000422226.1_3	ENST00000553843.5_1	chrX	119251551	119253610	LINC01402	-	lncRNA	chrX	119170200	119280760	RHOXF1-AS1	+	lncRNA	2059	opposite	7641_ID	chrX	119251552	119253610	2059	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3721	ENST00000422718.1_3	ENST00000444204.2_1	chr3	186569674	186573912	ADIPOQ-AS1	-	lncRNA	chr3	186560492	186576252	ADIPOQ	+	protein_coding	4238	opposite	4361_ID	chr3	186569675	186573912	4238	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	3	4
3727	ENST00000422833.1_1	ENST00000440255.1_3	chr22	28103577	28105929	AL121885.3	+	lncRNA	chr22	28072555	28110959	AL121885.2	-	lncRNA	2352	opposite	4766_ID	chr22	28103578	28105929	2352	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3760	ENST00000423778.7_5	ENST00000467708.2_1	chr3	134318764	134369864	KY	-	protein_coding	chr3	134316720	134498741	EPHB1	+	processed_transcript	51714	opposite	7498_ID	chr3	134318765	134369864	51100	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
3766	ENST00000423967.1	ENST00000646873.1_3	chr21	45626407	45627282	AP001058.3	-	lincRNA	chr21	45555956	45629997	GATD3A	+	protein_coding	875	opposite	6088_ID	chr21	45626408	45627282	875	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
3778	ENST00000424418.1_1	ENST00000372852.4_4	chr1	40099087	40099575	AL035404.2	+	lncRNA	chr1	40089106	40105315	HEYL	-	protein_coding	488	opposite	4600_ID	chr1	40099088	40099575	488	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3812	ENST00000425117.6_2	ENST00000432062.1_3	chrX	129040096	129063737	UTP14A	+	protein_coding	chrX	129003039	129091504	AL034405.1	-	lncRNA	23641	opposite	12885_ID	chrX	129040097	129063737	23641	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
3817	ENST00000425192.1_3	ENST00000258383.4_3	chr2	224830417	224832423	AC073641.1	-	lncRNA	chr2	224822179	224832431	MRPL44	+	protein_coding	2006	opposite	2542_ID	chr2	224830418	224832423	2006	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	4
3833	ENST00000425668.1_1	ENST00000401467.6_4	chr19	43326014	43331030	PSG8-AS1	+	lncRNA	chr19	43256878	43359843	PSG8	-	protein_coding	5016	opposite	9664_ID	chr19	43326015	43331030	5016	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3883	ENST00000428080.1_3	ENST00000602303.5_1	chr2	181844153	181844817	AC104076.1	-	lncRNA	chr2	181831974	181925539	UBE2E3	+	protein_coding	664	opposite	3506_ID	chr2	181844154	181844817	664	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3884	ENST00000428083.1_3	ENST00000678200.1_1	chr3	49402577	49404439	RHOA-IT1	-	lncRNA	chr3	49396571	49449971	RHOA	-	protein_coding	1862	same	9747_ID	chr3	49402578	49404439	1862	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
3886	ENST00000428166.1_3	ENST00000660192.1_1	chr10	91406045	91410579	AL157400.1	-	lncRNA	chr10	91405028	91411901	AL157400.2	+	lncRNA	4534	opposite	5060_ID	chr10	91406046	91410579	4534	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
3891	ENST00000428285.1_3	ENST00000618693.4_5	chr20	18655038	18679353	DTD1-AS1	-	lncRNA	chr20	18548096	18724860	AL121900.1	+	protein_coding	24315	opposite	6857_ID	chr20	18655039	18679353	24315	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
3903	ENST00000428569.1_3	ENST00000664489.1_1	chr1	191827892	191859359	AL359081.1	-	lncRNA	chr1	191792561	191979911	LINC02770	+	lncRNA	31523	opposite	5469_ID	chr1	191827893	191859359	31467	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3923	ENST00000429063.5_1	ENST00000412903.1_5	chr11	5729437	5758319	TRIM22	+	protein_coding	chr11	5699549	5959849	TRIM5	-	protein_coding	47393	opposite	12778_ID	chr11	5729438	5758319	28882	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
3924	ENST00000429099.1_3	ENST00000647620.1_1	chr1	53814159	53814905	AC119428.1	-	lncRNA	chr1	53809702	53831145	AC119428.2	+	lncRNA	746	opposite	3952_ID	chr1	53814160	53814905	746	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
3932	ENST00000429293.1_1	ENST00000426886.1_3	chr1	35316294	35317156	AL122010.1	+	lncRNA	chr1	35178337	35325336	SMIM12	-	nonsense_mediated_decay	862	opposite	4795_ID	chr1	35316295	35317156	862	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
3950	ENST00000429843.1_1	ENST00000422809.5_1	chr21	30868366	30872706	BACH1-IT3	+	lncRNA	chr21	30699449	31003071	BACH1	+	protein_coding	4340	same	6401_ID	chr21	30868367	30872706	4340	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
3962	ENST00000430111.1_1	ENST00000322527.4_4	chr13	103395339	103397574	LINC00283	+	lncRNA	chr13	103381716	103411422	CCDC168	-	protein_coding	2235	opposite	7536_ID	chr13	103395340	103397574	2235	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	4	4
3972	ENST00000430375.1_3	ENST00000445281.5_1	chr3	190931079	190952394	OSTN-AS1	-	lncRNA	chr3	190917029	190983404	OSTN	+	protein_coding	21315	opposite	9481_ID	chr3	190931080	190952394	21315	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
3973	ENST00000430385.3_4	ENST00000435033.1_4	chr19	12500829	12512085	ZNF799	-	protein_coding	chr19	12490002	12512088	AC008758.4	-	lncRNA	11256	same	13074_ID	chr19	12500830	12512085	11256	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
3987	ENST00000430641.1_3	ENST00000486029.1_1	chrX	18706761	18709723	PPEF1-AS1	-	lncRNA	chrX	18694028	18716028	PPEF1	+	processed_transcript	2962	opposite	9609_ID	chrX	18706762	18709723	2962	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
3999	ENST00000430970.1_3	ENST00000527483.5_3	chr10	127407339	127407934	AL158835.2	-	lncRNA	chr10	127389004	127408029	EDRF1-DT	-	lncRNA	595	same	5120_ID	chr10	127407340	127407934	595	*	-	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4010	ENST00000431351.1_1	ENST00000454414.5_8	chr2	191882679	191883805	AC067945.1	+	lncRNA	chr2	191865811	191885046	STAT1	-	protein_coding	1126	opposite	2381_ID	chr2	191882680	191883805	1126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4026	ENST00000431947.1_3	ENST00000415477.1_3	chr6	151517815	151518773	AL138733.2	-	lncRNA	chr6	151409238	151549582	AL138733.1	-	lncRNA	958	same	4972_ID	chr6	151517816	151518773	958	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4029	ENST00000431956.1_3	ENST00000458063.1_1	chr10	44126329	44127012	AL645634.2	-	lncRNA	chr10	44124264	44170151	ZNF32-AS3	+	lncRNA	683	opposite	5862_ID	chr10	44126330	44127012	683	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4037	ENST00000432141.1_1	ENST00000547341.5_3	chr21	39578249	39580738	DSCR10	+	lncRNA	chr21	39529127	39671328	KCNJ15	+	protein_coding	2489	same	6850_ID	chr21	39578250	39580738	2489	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4064	ENST00000432957.1_1	ENST00000373652.7_1	chr2	230807443	230809853	FBXO36-IT1	+	lncRNA	chr2	230787017	230877825	FBXO36	+	protein_coding	2410	same	7009_ID	chr2	230807444	230809853	2410	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
4088	ENST00000433474.1_3	ENST00000373045.10_1	chr1	38265391	38266551	AL929472.3	-	lncRNA	chr1	38259473	38266805	MANEAL	+	protein_coding	1160	opposite	5922_ID	chr1	38265392	38266551	1160	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
4115	ENST00000434440.1_1	ENST00000635422.1_1	chr10	80053598	80060760	AC010163.1	+	lncRNA	chr10	79938941	80302384	LINC00595	+	lncRNA	7162	same	1023_ID	chr10	80053599	80060760	7162	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4122	ENST00000434679.6_2	ENST00000464967.5_4	chrX	153167984	153172620	AVPR2	+	nonsense_mediated_decay	chrX	153137675	153174677	U52112.1	-	retained_intron	4636	opposite	6385_ID	chrX	153167985	153172620	4636	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4135	ENST00000435001.1_3	ENST00000645093.1_3	chr21	39089404	39091872	KCNJ6-AS1	-	lncRNA	chr21	38995860	39493439	KCNJ6	-	protein_coding	2468	same	7420_ID	chr21	39089405	39091872	2468	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
4166	ENST00000435766.1_3	ENST00000005257.7_2	chr7	39739939	39742895	AC004837.2	-	lncRNA	chr7	39663170	39747719	RALA	+	protein_coding	2956	opposite	181_ID	chr7	39739940	39742895	2956	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
4171	ENST00000435912.1_1	ENST00000245663.9_3	chr20	62439428	62447874	ZBTB46-AS1	+	lncRNA	chr20	62375022	62462617	ZBTB46	-	protein_coding	8446	opposite	13002_ID	chr20	62439429	62447874	8446	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4196	ENST00000436529.2_1	ENST00000422809.5_1	chr21	30743267	30746029	BACH1-IT2	+	lncRNA	chr21	30699449	31003071	BACH1	+	protein_coding	3212	same	6400_ID	chr21	30743268	30746029	2762	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
4221	ENST00000437102.1_3	ENST00000498111.5_1	chr3	42897496	42917390	CYP8B1	-	protein_coding	chr3	42850953	42929466	ACKR2	+	processed_transcript	19894	opposite	6759_ID	chr3	42897497	42917390	19894	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
4222	ENST00000437109.1_3	ENST00000439107.1_3	chr21	33393278	33394095	HUNK-AS1	-	lncRNA	chr21	33347014	33416946	HUNK	+	protein_coding	817	opposite	7317_ID	chr21	33393279	33394095	817	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
4226	ENST00000437192.8_4	ENST00000574423.2_1	chr16	3543483	3545489	C16orf90	-	protein_coding	chr16	3508070	3565564	AC004224.2	+	lncRNA	2006	opposite	6482_ID	chr16	3543484	3545489	2006	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4229	ENST00000437261.1_2	ENST00000415387.1_3	chr2	213775726	213784533	AC108066.1	+	lncRNA	chr2	213446080	213886269	AC093865.1	-	lncRNA	8807	opposite	3719_ID	chr2	213775727	213784533	8807	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4234	ENST00000437438.1_3	ENST00000192314.7_2	chr2	242740330	242741322	AC131097.1	-	lncRNA	chr2	242716236	242743702	GAL3ST2	+	protein_coding	992	opposite	4082_ID	chr2	242740331	242741322	992	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
4238	ENST00000437646.1_1	ENST00000658570.1_4	chr17	19322347	19327670	LINC02094	+	lncRNA	chr17	19321081	19364279	AC004448.2	-	lncRNA	5323	opposite	7724_ID	chr17	19322348	19327670	5323	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
4250	ENST00000438147.2_3	ENST00000427722.2_1	chr9	3684075	3689626	AL354977.1	-	lncRNA	chr9	3668164	3691814	RFX3-AS1	+	lncRNA	5551	opposite	5304_ID	chr9	3684076	3689626	5551	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
4255	ENST00000438416.2_1	ENST00000536540.5_3	chr11	94371203	94373999	AP000943.1	+	lncRNA	chr11	94278495	94473435	AP000943.2	-	lncRNA	2796	opposite	6059_ID	chr11	94371204	94373999	2796	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
4257	ENST00000438474.1_2	ENST00000412903.1_5	chr11	5747731	5748694	OR52P1P	+	polymorphic_pseudogene	chr11	5699549	5959849	TRIM5	-	protein_coding	963	opposite	9451_ID	chr11	5747732	5748694	963	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
4261	ENST00000438554.2_1	ENST00000372336.4_4	chr10	81142083	81169030	AL133481.1	+	lncRNA	chr10	81142080	81205380	ZCCHC24	-	protein_coding	26947	opposite	4863_ID	chr10	81142084	81169030	26947	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	4
4272	ENST00000438824.1_1	ENST00000412387.5_3	chr2	208125168	208135414	LINC01802	+	lncRNA	chr2	208104844	208394519	AC009226.1	-	lncRNA	10246	opposite	7681_ID	chr2	208125169	208135414	10246	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
4277	ENST00000438897.1_1	ENST00000645030.2_3	chr2	112022859	112037457	AC068491.1	+	lncRNA	chr2	111763591	112252647	MIR4435-2HG	-	lncRNA	14598	opposite	2415_ID	chr2	112022860	112037457	14598	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
4294	ENST00000439236.6_3	ENST00000403681.7_5	chr12	66245119	66275947	HMGA2-AS1	-	lncRNA	chr12	66218262	66360071	HMGA2	+	protein_coding	30828	opposite	7245_ID	chr12	66245120	66275947	30828	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
4300	ENST00000439423.1_3	ENST00000381051.6_1	chr22	46451619	46454040	AL121672.1	-	lncRNA	chr22	46449748	46501903	MIRLET7BHG	+	lncRNA	2421	opposite	4740_ID	chr22	46451620	46454040	2421	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4311	ENST00000439745.1_3	ENST00000420404.2_2	chr2	16408294	16409462	AC010745.3	-	lncRNA	chr2	16405314	16515246	AC010745.2	+	lncRNA	1168	opposite	1135_ID	chr2	16408295	16409462	1168	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
4349	ENST00000440714.1_3	ENST00000652155.1_3	chr21	40400460	40401053	AF064858.2	-	lncRNA	chr21	40370576	40434820	AF064858.1	-	lncRNA	593	same	4368_ID	chr21	40400461	40401053	593	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4379	ENST00000441769.3_1	ENST00000404796.3_2	chr9	21966927	21967750	CDKN2A-DT	+	lncRNA	chr9	21802634	22029593	AL359922.1	+	nonsense_mediated_decay	823	same	6604_ID	chr9	21966928	21967750	823	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
4400	ENST00000442274.1_3	ENST00000519697.1_3	chr8	73996021	73998114	AC100823.1	-	lncRNA	chr8	73978766	74036323	SBSPON	-	processed_transcript	2093	same	3425_ID	chr8	73996022	73998114	2093	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4424	ENST00000442822.6_3	ENST00000645134.1_1	chr6	32256302	32339676	TSBP1	-	protein_coding	chr6	32223104	32375540	TSBP1-AS1	+	lncRNA	83387	opposite	12797_ID	chr6	32256303	32339676	83374	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4439	ENST00000443282.1_2	ENST00000181796.6_5	chr10	14694740	14703690	AL158168.1	+	lncRNA	chr10	14560558	14816896	FAM107B	-	protein_coding	9003	opposite	5107_ID	chr10	14694741	14703690	8950	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
4460	ENST00000444197.3_2	ENST00000377149.5_3	chr6	29407082	29408754	OR10C1	+	protein_coding	chr6	29393280	29424848	OR11A1	-	protein_coding	1672	opposite	9347_ID	chr6	29407083	29408754	1672	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4463	ENST00000444266.2_4	ENST00000426260.5_1	chr2	67148641	67149614	LINC01628	-	lncRNA	chr2	67131567	67198594	LINC01799	+	lncRNA	973	opposite	7662_ID	chr2	67148642	67149614	973	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4468	ENST00000444482.1_1	ENST00000602772.5_2	chrX	73168807	73169393	AL353804.1	+	lncRNA	chrX	73164162	73290243	JPX	+	lncRNA	586	same	5270_ID	chrX	73168808	73169393	586	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
4474	ENST00000444847.2_4	ENST00000357429.10_4	chr7	1084181	1098897	GPR146	+	protein_coding	chr7	1036621	1177893	C7orf50	-	protein_coding	14716	opposite	7155_ID	chr7	1084182	1098897	14716	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
4477	ENST00000444873.1_1	ENST00000646249.1_3	chr2	60722820	60727099	AC009970.1	+	lncRNA	chr2	60677654	60781602	BCL11A	-	protein_coding	4279	opposite	1014_ID	chr2	60722821	60727099	4279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
4483	ENST00000444977.1_3	ENST00000547341.5_3	chr21	39609138	39610123	AP001434.1	-	lncRNA	chr21	39529127	39671328	KCNJ15	+	protein_coding	985	opposite	6132_ID	chr21	39609139	39610123	985	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4495	ENST00000445290.1_3	ENST00000669750.1_3	chr1	171168385	171196927	AL021026.1	-	lncRNA	chr1	170717713	171220947	BX284613.2	-	lncRNA	28545	same	4444_ID	chr1	171168386	171196927	28542	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
4514	ENST00000445907.6_1	ENST00000586239.5_5	chr7	136553415	136705002	CHRM2	+	protein_coding	chr7	136370305	136849020	AC009264.1	-	lncRNA	151587	opposite	6647_ID	chr7	136553416	136705002	151587	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
4530	ENST00000446290.1_3	ENST00000413269.3_1	chr9	71158456	71161505	LINC01506	-	lncRNA	chr9	71155951	71259358	TMEM252-DT	+	lncRNA	3049	opposite	7646_ID	chr9	71158457	71161505	3049	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
4531	ENST00000446301.1_1	ENST00000318948.7_4	chr21	16333629	16336554	AF127577.1	+	lncRNA	chr21	16333555	16437321	NRIP1	-	protein_coding	2925	opposite	4384_ID	chr21	16333630	16336554	2925	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	4
4574	ENST00000447344.1_3	ENST00000523148.5_3	chr10	102740263	102745371	AL133215.1	-	lncRNA	chr10	102729214	102746953	MRPL43	-	protein_coding	5108	same	4823_ID	chr10	102740264	102745371	5108	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
4575	ENST00000447347.1_1	ENST00000433624.1_1	chrX	154697946	154716707	BX571846.1	+	lncRNA	chrX	154696200	154723771	TMLHE-AS1	+	lncRNA	18761	same	6457_ID	chrX	154697947	154716707	18761	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
4577	ENST00000447508.1_1	ENST00000529882.5_5	chr6	135376170	135381688	AL353596.1	+	lncRNA	chr6	135323952	135424194	HBS1L	-	protein_coding	5518	opposite	5242_ID	chr6	135376171	135381688	5518	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4588	ENST00000447775.1_1	ENST00000428425.1_3	chr3	196666747	196669405	NCBP2-AS1	+	lncRNA	chr3	196662279	196669465	NCBP2	-	nonsense_mediated_decay	2658	opposite	9238_ID	chr3	196666748	196669405	2658	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
4598	ENST00000448086.1_1	ENST00000657931.1_3	chr2	216139714	216142670	LINC02862	+	lncRNA	chr2	216043513	216175670	AC092844.1	-	lncRNA	2956	opposite	7809_ID	chr2	216139715	216142670	2956	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
4614	ENST00000448580.1_7	ENST00000669090.1_1	chr20	25989426	25991167	AL078587.1	-	lncRNA	chr20	25965845	26063600	FAM182A	+	lncRNA	1741	opposite	4662_ID	chr20	25989427	25991167	1741	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4651	ENST00000449721.1_1	ENST00000357429.10_4	chr7	1114085	1117672	AC091729.1	+	lncRNA	chr7	1036621	1177893	C7orf50	-	protein_coding	3587	opposite	3009_ID	chr7	1114086	1117672	3587	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
4684	ENST00000450908.2_1	ENST00000430070.7_5	chr11	47599276	47599829	KF459542.1	+	lncRNA	chr11	47593748	47600522	KBTBD4	-	protein_coding	553	opposite	7436_ID	chr11	47599277	47599829	553	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
4692	ENST00000451066.1_3	ENST00000469183.5_2	chr7	7989483	7990340	AC006042.3	-	lncRNA	chr7	7680382	8043683	AC007161.3	+	lncRNA	857	opposite	402_ID	chr7	7989484	7990340	857	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
4702	ENST00000451230.1_1	ENST00000645030.2_3	chr2	111953539	111964071	AC108463.2	+	lncRNA	chr2	111763591	112252647	MIR4435-2HG	-	lncRNA	10532	opposite	3738_ID	chr2	111953540	111964071	10532	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
4706	ENST00000451289.1_3	ENST00000428516.1_4	chr3	176531942	176534789	LINC01209	-	lncRNA	chr3	176361728	176585626	LINC01208	-	lncRNA	2847	same	7619_ID	chr3	176531943	176534789	2847	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
4720	ENST00000451611.1_1	ENST00000370205.6_4	chr1	95527151	95533101	ALG14-AS1	+	lncRNA	chr1	95439960	95538507	ALG14	-	protein_coding	5950	opposite	5930_ID	chr1	95527152	95533101	5950	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
4723	ENST00000451630.1_1	ENST00000376131.8_4	chr13	103019913	103026016	FGF14-AS1	+	lncRNA	chr13	102363153	103054124	FGF14	-	protein_coding	6128	opposite	7020_ID	chr13	103019914	103026016	6103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4754	ENST00000452366.1_1	ENST00000432694.2_1	chr1	172876039	172876824	Z97198.1	+	lncRNA	chr1	172745044	173033155	AL031599.1	+	lncRNA	785	same	12964_ID	chr1	172876040	172876824	785	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4764	ENST00000452599.1_3	ENST00000358024.8_3	chr1	205202948	205205995	TMCC2-AS1	-	lncRNA	chr1	205197073	205242471	TMCC2	+	protein_coding	3047	opposite	12707_ID	chr1	205202949	205205995	3047	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4774	ENST00000452888.1_1	ENST00000655921.1_3	chr6	134957626	134963633	AL596188.1	+	lncRNA	chr6	134846284	135010473	AL078590.2	-	lncRNA	6007	opposite	5823_ID	chr6	134957627	134963633	6007	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4787	ENST00000453284.1_1	ENST00000458063.1_1	chr10	44139319	44140495	ZNF32-AS1	+	lncRNA	chr10	44124264	44170151	ZNF32-AS3	+	lncRNA	1176	same	13035_ID	chr10	44139320	44140495	1176	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4845	ENST00000455011.1_3	ENST00000650553.1_3	chr6	141167094	141174061	AL035446.1	-	lncRNA	chr6	140896924	141219518	AL035446.2	-	lncRNA	6967	same	4606_ID	chr6	141167095	141174061	6967	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4851	ENST00000455229.1_3	ENST00000367326.1_1	chr6	150971907	150973161	AL450344.2	-	lncRNA	chr6	150921018	151054957	PLEKHG1	+	protein_coding	1254	opposite	5655_ID	chr6	150971908	150973161	1254	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
4867	ENST00000455557.2_3	ENST00000662856.1_1	chr3	194217045	194222232	AC108676.1	-	lncRNA	chr3	194207874	194241883	LINC00884	+	lncRNA	5187	opposite	3744_ID	chr3	194217046	194222232	5187	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
4875	ENST00000455744.1_3	ENST00000471204.5_5	chr1	6264899	6265840	RNF207-AS1	-	lncRNA	chr1	6246751	6269304	RPL22	-	protein_coding	941	same	10544_ID	chr1	6264900	6265840	941	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
4897	ENST00000456324.5_1	ENST00000355114.9_4	chr19	36705503	36729673	ZNF146	+	protein_coding	chr19	36673195	36737159	ZNF565	-	protein_coding	24170	opposite	13019_ID	chr19	36705504	36729673	24170	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4904	ENST00000456530.7_2	ENST00000421515.6_4	chr3	23958629	23965865	RPL15	+	protein_coding	chr3	23933554	23988082	NKIRAS1	-	protein_coding	7784	opposite	11952_ID	chr3	23958630	23965865	7236	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4918	ENST00000456806.3_2	ENST00000647787.1_1	chr7	63505811	63545717	ZNF727	+	protein_coding	chr7	63505806	63574934	AC115220.1	+	lncRNA	39906	same	13067_ID	chr7	63505812	63545717	39906	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
4921	ENST00000457033.5_3	ENST00000444244.1_3	chr7	115915659	115926718	AC073130.1	-	lncRNA	chr7	115878057	115967950	AC073130.2	-	lncRNA	11129	same	2507_ID	chr7	115915660	115926718	11059	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
4953	ENST00000457609.1_3	ENST00000582752.7_4	chr17	13836036	13843911	AC005304.1	-	lncRNA	chr17	13658890	13972800	COX10-AS1	-	lncRNA	7875	same	270_ID	chr17	13836037	13843911	7875	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
4975	ENST00000458392.1_3	ENST00000445552.6_6	chr17	44636195	44640161	FAM215B	-	lncRNA	chr17	44594067	44657036	ARL17A	-	protein_coding	3966	same	6970_ID	chr17	44636196	44640161	3966	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
5024	ENST00000458888.1	ENST00000664963.1_1	chr7	46014975	46015037	RNU7-76P	-	snRNA	chr7	45980047	46026071	AC073115.2	+	lncRNA	62	opposite	11806_ID	chr7	46014976	46015037	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5026	ENST00000458893.1	ENST00000422514.7_2	chr17	27047567	27047634	SNORD42B	+	snoRNA	chr17	27047002	27051377	RPL23A	+	protein_coding	67	same	12407_ID	chr17	27047568	27047634	67	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5029	ENST00000458939.1	ENST00000296684.10_2	chr5	52905416	52905488	AC024569.1	+	miRNA	chr5	52856468	52979168	NDUFS4	+	protein_coding	72	same	2019_ID	chr5	52905417	52905488	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5030	ENST00000458950.1	ENST00000290942.9_3	chr16	67424593	67424753	RNU1-123P	-	snRNA	chr16	67423727	67427421	TPPP3	-	protein_coding	160	same	10559_ID	chr16	67424594	67424753	160	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
5042	ENST00000459080.1	ENST00000415477.1_3	chr6	151522475	151522579	RNU6-300P	+	snRNA	chr6	151409238	151549582	AL138733.1	-	lncRNA	104	opposite	11141_ID	chr6	151522476	151522579	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5044	ENST00000459083.1	ENST00000422514.7_2	chr17	27050699	27050771	SNORD4B	+	snoRNA	chr17	27047002	27051377	RPL23A	+	protein_coding	72	same	12416_ID	chr17	27050700	27050771	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
5049	ENST00000459120.1	ENST00000671933.1_1	chr4	25600185	25600247	RNU7-126P	-	snRNA	chr4	25530798	25621069	AC105290.1	+	lncRNA	62	opposite	11713_ID	chr4	25600186	25600247	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
5053	ENST00000459159.1	ENST00000676461.1_1	chr8	56986393	56986460	SNORD54	-	snoRNA	chr8	56979827	56987067	RPS20	-	nonsense_mediated_decay	67	same	12421_ID	chr8	56986394	56986460	67	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5057	ENST00000459174.1	ENST00000422514.7_2	chr17	27049599	27049671	SNORD4A	+	snoRNA	chr17	27047002	27051377	RPL23A	+	protein_coding	72	same	12415_ID	chr17	27049600	27049671	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5062	ENST00000459187.1	ENST00000532365.2_2	chr11	10823013	10823155	SNORD97	-	snoRNA	chr11	10797067	10823172	CTR9	+	nonsense_mediated_decay	142	opposite	12469_ID	chr11	10823014	10823155	142	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	4
5068	ENST00000459214.1	ENST00000470729.5_3	chr2	132909815	132909922	RNU6-1132P	-	snRNA	chr2	132905163	133015542	ANKRD30BL	-	processed_transcript	107	same	10847_ID	chr2	132909816	132909922	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
5070	ENST00000459216.1	ENST00000668995.1_1	chr16	72707401	72707463	RNU7-90P	+	snRNA	chr16	72699021	72856680	AC004943.2	+	lncRNA	62	same	11817_ID	chr16	72707402	72707463	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5080	ENST00000459267.2	ENST00000653847.1_3	chr4	9601951	9602051	AC097493.1	-	miRNA	chr4	9569097	9693410	AC105916.1	-	lncRNA	100	same	3321_ID	chr4	9601952	9602051	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
5113	ENST00000459463.1	ENST00000488578.1	chr1	146124160	146124283	RNA5SP57	+	rRNA	chr1	146093233	146130539	RP4-565E6.1	-	sense_intronic	123	opposite	10523_ID	chr1	146124161	146124283	123	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5128	ENST00000459545.1	ENST00000656005.1_3	chr21	26711318	26711413	AP001340.1	+	miRNA	chr21	26541745	26734182	AP001341.1	-	lncRNA	95	opposite	6119_ID	chr21	26711319	26711413	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5138	ENST00000459584.1	ENST00000422514.7_2	chr17	27050446	27050510	SNORD42A	+	snoRNA	chr17	27047002	27051377	RPL23A	+	protein_coding	64	same	12406_ID	chr17	27050447	27050510	64	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
5157	ENST00000460851.6_4	ENST00000479209.1_4	chr3	150264573	150303803	EIF2A	+	protein_coding	chr3	150259784	150320961	SERP1	-	protein_coding	39339	opposite	6886_ID	chr3	150264574	150303803	39230	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
5158	ENST00000460858.2	ENST00000552856.1_3	chr12	76351613	76351910	RN7SL734P	-	misc_RNA	chr12	75956981	76377795	AC078923.1	-	lncRNA	297	same	10389_ID	chr12	76351614	76351910	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5165	ENST00000461771.2	ENST00000631061.2_3	chr7	104552363	104552644	RN7SL8P	+	misc_RNA	chr7	104535074	104567092	LHFPL3-AS2	-	lncRNA	281	opposite	10497_ID	chr7	104552364	104552644	281	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
5193	ENST00000463035.2	ENST00000468762.3_4	chrX	113219602	113219893	RN7SL93P	-	misc_RNA	chrX	112859586	113302310	XACT	-	lncRNA	291	same	10501_ID	chrX	113219603	113219893	291	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5195	ENST00000463297.1_1	ENST00000488210.1_3	chr3	153599314	153658625	AC068985.1	+	lncRNA	chr3	153448549	153697975	LINC02006	-	lncRNA	59311	opposite	2460_ID	chr3	153599315	153658625	59311	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
5213	ENST00000464648.2	ENST00000278483.8_2	chr11	86035055	86035351	RN7SL225P	-	misc_RNA	chr11	86013281	86056985	HIKESHI	+	protein_coding	296	opposite	10031_ID	chr11	86035056	86035351	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5225	ENST00000465419.7_5	ENST00000476886.5_1	chr3	150588162	150623226	MINDY4B	-	protein_coding	chr3	150570270	150798513	CLRN1-AS1	+	lncRNA	35064	opposite	7952_ID	chr3	150588163	150623226	35064	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5276	ENST00000469268.1_1	ENST00000476886.5_1	chr3	150608422	150756605	AC020636.1	+	lncRNA	chr3	150570270	150798513	CLRN1-AS1	+	lncRNA	148183	same	1714_ID	chr3	150608423	150756605	148183	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5302	ENST00000470634.2	ENST00000209875.9_4	chr12	54649414	54649694	RN7SL390P	-	misc_RNA	chr12	54624725	54673906	CBX5	-	protein_coding	280	same	10151_ID	chr12	54649415	54649694	280	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5303	ENST00000470639.2	ENST00000666145.1_1	chr5	103596233	103596527	RN7SL255P	-	misc_RNA	chr5	103415619	103741822	LINC02163	+	lncRNA	294	opposite	10058_ID	chr5	103596234	103596527	294	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
5309	ENST00000470866.1_5	ENST00000472903.5_2	chr4	71522985	71547534	JCHAIN	-	protein_coding	chr4	71503461	71552533	AC009570.2	+	lncRNA	26277	opposite	7387_ID	chr4	71522986	71547534	24549	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
5380	ENST00000475219.6_1	ENST00000586115.5_3	chr19	37063971	37085610	ZNF529-AS1	+	lncRNA	chr19	37039002	37096178	ZNF529	-	protein_coding	21639	opposite	13053_ID	chr19	37063972	37085610	21639	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
5391	ENST00000476099.1_3	ENST00000644499.1_3	chr6	116781901	116784855	CALHM6-AS1	-	lncRNA	chr6	116720557	116784859	Z84488.1	+	protein_coding	2954	opposite	6542_ID	chr6	116781902	116784855	2954	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	4
5392	ENST00000476144.2	ENST00000519250.5_3	chr8	81116840	81117135	RN7SL41P	+	misc_RNA	chr8	80963778	81143467	TPD52	-	processed_transcript	295	opposite	10171_ID	chr8	81116841	81117135	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5404	ENST00000476759.2	ENST00000663396.1_3	chr4	174062793	174063087	RN7SL253P	+	misc_RNA	chr4	174016144	174090255	AC105285.1	-	lncRNA	294	opposite	10056_ID	chr4	174062794	174063087	294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
5413	ENST00000477805.1_1	ENST00000474851.1_3	chr3	116428625	116442428	TUSC7	+	lncRNA	chr3	115738361	116858236	LSAMP	-	protein_coding	14347	opposite	12825_ID	chr3	116428626	116442428	13803	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5425	ENST00000478418.2	ENST00000430772.6_4	chrX	73462444	73462736	RN7SL648P	-	misc_RNA	chrX	73184043	73513368	FTX	-	lncRNA	292	same	10333_ID	chrX	73462445	73462736	292	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
5442	ENST00000479462.2	ENST00000502271.5_3	chr5	53343838	53344138	RN7SL801P	-	misc_RNA	chr5	53179774	53606412	ARL15	-	protein_coding	300	same	10444_ID	chr5	53343839	53344138	300	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
5454	ENST00000480777.2	ENST00000432241.5_3	chr2	46675364	46675650	RN7SL817P	-	misc_RNA	chr2	46656333	46711563	AC016912.2	+	lncRNA	286	opposite	10456_ID	chr2	46675365	46675650	286	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
5459	ENST00000480997.2	ENST00000225171.7_4	chr10	69585067	69585358	RN7SL394P	-	misc_RNA	chr10	69556426	69597946	DNAJC12	-	protein_coding	291	same	10153_ID	chr10	69585068	69585358	291	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5469	ENST00000481747.1_3	ENST00000381898.5_1	chr20	1161927	1166059	TMEM74B	-	processed_transcript	chr20	1115920	1170059	PSMF1	+	protein_coding	4855	opposite	12738_ID	chr20	1161928	1166059	4132	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
5471	ENST00000481796.1_1	ENST00000639147.1_1	chr3	158680716	158980466	IQCJ	+	processed_transcript	chr3	158680023	159482388	IQCJ-SCHIP1	+	processed_transcript	303380	same	7365_ID	chr3	158680717	158980466	299750	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
5487	ENST00000482923.2	ENST00000324679.5_4	chr14	51104411	51104699	RN7SL452P	-	misc_RNA	chr14	51100297	51135024	SAV1	-	protein_coding	288	same	10193_ID	chr14	51104412	51104699	288	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
5511	ENST00000484759.2	ENST00000592569.1_1	chr17	76366934	76367216	RN7SL236P	-	misc_RNA	chr17	76356533	76369992	AC061992.2	+	lncRNA	282	opposite	10041_ID	chr17	76366935	76367216	282	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
5524	ENST00000485238.2	ENST00000661451.1_1	chr12	24859721	24860015	RN7SL38P	+	misc_RNA	chr12	24857436	24928499	AC023796.1	+	lncRNA	294	same	10150_ID	chr12	24859722	24860015	294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5530	ENST00000485386.1_3	ENST00000479961.1_6	chr15	80191245	80216044	ST20	-	protein_coding	chr15	80137536	80216086	ST20-MTHFS	-	protein_coding	24863	same	12554_ID	chr15	80191246	80216044	24799	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	4
5553	ENST00000487512.1_1	ENST00000474851.1_3	chr3	116640277	116651085	LINC00901	+	lncRNA	chr3	115738361	116858236	LSAMP	-	protein_coding	10808	opposite	7580_ID	chr3	116640278	116651085	10808	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5594	ENST00000490375.1_3	ENST00000480247.1_1	chr3	145784130	145786972	LNCSRLR	-	lncRNA	chr3	145781905	145822991	AC107021.1	+	lncRNA	2842	opposite	7841_ID	chr3	145784131	145786972	2842	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
5599	ENST00000491078.2	ENST00000474851.1_3	chr3	116301400	116301677	RN7SL582P	-	misc_RNA	chr3	115738361	116858236	LSAMP	-	protein_coding	277	same	10284_ID	chr3	116301401	116301677	277	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5612	ENST00000491708.2	ENST00000655512.1_1	chr4	43865290	43865563	RN7SL193P	+	misc_RNA	chr4	43765676	43974201	AC080132.1	+	lncRNA	273	same	10008_ID	chr4	43865291	43865563	273	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
5621	ENST00000492388.2	ENST00000318348.9_4	chr12	110304020	110304314	RN7SL441P	-	misc_RNA	chr12	110288749	110318346	GLTP	-	protein_coding	294	same	10184_ID	chr12	110304021	110304314	294	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5655	ENST00000494456.2	ENST00000261858.7_3	chr15	69542865	69543134	RN7SL438P	-	misc_RNA	chr15	69452973	69564546	GLCE	+	protein_coding	269	opposite	10182_ID	chr15	69542866	69543134	269	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5656	ENST00000494527.2	ENST00000618693.4_5	chr20	18572973	18573261	RN7SL638P	+	misc_RNA	chr20	18548096	18724860	AL121900.1	+	protein_coding	288	same	10327_ID	chr20	18572974	18573261	288	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5660	ENST00000495193.2	ENST00000495903.1_3	chr10	89592577	89592855	RN7SL78P	-	misc_RNA	chr10	89544308	89601100	ATAD1	-	processed_transcript	278	same	10433_ID	chr10	89592578	89592855	278	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5662	ENST00000495576.1_3	ENST00000466430.5_3	chr1	89550	91105	AL627309.3	-	lncRNA	chr1	89294	120932	AL627309.1	-	lncRNA	1555	same	5853_ID	chr1	89551	91105	1555	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	4	4
5676	ENST00000496490.2	ENST00000339468.8_4	chr22	22077171	22077471	RN7SL280P	-	misc_RNA	chr22	22051824	22090083	YPEL1	-	protein_coding	300	same	10076_ID	chr22	22077172	22077471	300	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5690	ENST00000497517.6_1	ENST00000650512.1_3	chr2	1377994	1546594	TPO	+	processed_transcript	chr2	1370005	1584519	AC105450.1	-	lncRNA	169646	opposite	12769_ID	chr2	1377995	1546594	168600	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
5693	ENST00000497854.1_1	ENST00000474851.1_3	chr3	116271319	116287111	LINC00903	+	lncRNA	chr3	115738361	116858236	LSAMP	-	protein_coding	15792	opposite	7581_ID	chr3	116271320	116287111	15792	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5695	ENST00000497896.1_3	ENST00000460744.1_1	chr3	111185159	111215942	AC092916.1	-	lncRNA	chr3	111011565	111261149	CD96	+	protein_coding	30783	opposite	3172_ID	chr3	111185160	111215942	30783	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
5765	ENST00000502437.1_3	ENST00000502645.2_1	chr5	95549049	95550779	AC099509.1	-	lncRNA	chr5	95297704	95966789	AC104123.1	+	lncRNA	1730	opposite	3370_ID	chr5	95549050	95550779	1730	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5779	ENST00000503034.1_3	ENST00000508175.5_2	chr4	37589708	37590497	AC027607.1	-	lncRNA	chr4	37455609	37625117	C4orf19	+	protein_coding	789	opposite	2219_ID	chr4	37589709	37590497	789	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
5798	ENST00000503870.1_1	ENST00000637926.1_1	chr5	37948592	37951157	LINC02110	+	lncRNA	chr5	37839985	37953929	GDNF-AS1	+	lncRNA	2565	same	7727_ID	chr5	37948593	37951157	2565	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
5806	ENST00000504167.1_3	ENST00000515444.5_4	chr4	175085591	175090064	AC012055.2	-	lncRNA	chr4	175015810	175141549	LINC02268	-	lncRNA	4473	same	1323_ID	chr4	175085592	175090064	4473	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5811	ENST00000504298.1_1	ENST00000422809.5_1	chr21	30723954	30734215	BACH1-IT1	+	lncRNA	chr21	30699449	31003071	BACH1	+	protein_coding	10261	same	6398_ID	chr21	30723955	30734215	10261	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5832	ENST00000504906.1_3	ENST00000525734.5_6	chr11	117187077	117198754	AP000892.1	-	lncRNA	chr11	117185272	117222658	CEP164	+	protein_coding	11677	opposite	6045_ID	chr11	117187078	117198754	11677	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5846	ENST00000505326.6_2	ENST00000664054.1_3	chr4	33883202	33983971	AC016687.2	+	lncRNA	chr4	33777119	34041536	AC016687.3	-	lncRNA	131759	opposite	1550_ID	chr4	33883203	33983971	100769	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
5851	ENST00000505518.5_1	ENST00000666525.1_3	chr5	32947548	32962573	LINC02120	+	lncRNA	chr5	32888341	33049509	AC010343.3	-	lncRNA	15025	opposite	7730_ID	chr5	32947549	32962573	15025	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5869	ENST00000506041.2_3	ENST00000658478.1_1	chr5	87704798	87734907	LINC02060	-	lncRNA	chr5	87564707	87735149	TMEM161B-AS1	+	lncRNA	30109	opposite	7721_ID	chr5	87704799	87734907	30109	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
5871	ENST00000506070.1_3	ENST00000502645.2_1	chr5	95300702	95322015	AC008592.2	-	lncRNA	chr5	95297704	95966789	AC104123.1	+	lncRNA	21313	opposite	752_ID	chr5	95300703	95322015	21313	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5874	ENST00000506195.1_3	ENST00000510095.5_2	chr4	11742571	11771092	LINC02360	-	lncRNA	chr4	11627337	11815582	AC005699.1	+	lncRNA	28521	opposite	7764_ID	chr4	11742572	11771092	28521	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
5939	ENST00000507997.1_1	ENST00000502645.2_1	chr5	95385818	95551223	MIR583HG	+	lncRNA	chr5	95297704	95966789	AC104123.1	+	lncRNA	165405	same	8987_ID	chr5	95385819	95551223	165405	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5947	ENST00000508202.1_1	ENST00000669061.1_1	chr4	13779000	13783781	AC007126.1	-	lncRNA	chr4	13655997	14005366	LINC01182	+	lncRNA	4781	opposite	508_ID	chr4	13779001	13783781	4781	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5959	ENST00000508823.1_3	ENST00000662836.1_3	chr5	3496342	3504118	LINC01017	-	lncRNA	chr5	3357377	3531909	LINC01019	-	lncRNA	7776	same	7590_ID	chr5	3496343	3504118	7776	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5970	ENST00000509184.1_1	ENST00000509479.6_4	chr4	141049168	141055719	AC131182.1	+	lncRNA	chr4	140637906	141075338	MAML3	-	protein_coding	6551	opposite	4086_ID	chr4	141049169	141055719	6551	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5972	ENST00000509228.2_4	ENST00000504595.2_2	chr5	15606862	15619218	CTD-2350J17.1	-	lncRNA	chr5	15500288	15939902	FBXL7	+	protein_coding	16921	opposite	6737_ID	chr5	15606863	15619218	12356	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
5979	ENST00000509476.1_3	ENST00000282878.6_2	chr5	58037407	58112926	AC016642.1	-	lncRNA	chr5	57878901	58155221	RAB3C	+	protein_coding	75519	opposite	1546_ID	chr5	58037408	58112926	75519	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
5988	ENST00000509798.1_1	ENST00000656956.1_3	chr4	138114909	138119521	LINC02510	+	lncRNA	chr4	137717073	138133927	LINC02511	-	lncRNA	4612	opposite	7780_ID	chr4	138114910	138119521	4612	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
5994	ENST00000509956.1_1	ENST00000508313.2_4	chr4	170867131	170884485	AC084866.2	+	lncRNA	chr4	170838911	170897055	LINC02275	-	lncRNA	17357	opposite	2771_ID	chr4	170867132	170884485	17354	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6002	ENST00000510203.1_3	ENST00000656694.1_3	chr4	177787767	177796611	AC092673.1	-	lncRNA	chr4	177765646	178222312	AC097518.2	-	lncRNA	8844	same	3118_ID	chr4	177787768	177796611	8844	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
6011	ENST00000510602.1_1	ENST00000508038.1_1	chr4	41752361	41759358	AC105389.1	+	lncRNA	chr4	41750309	41826136	PHOX2B-AS1	+	lncRNA	6997	same	3616_ID	chr4	41752362	41759358	6997	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6027	ENST00000511017.6_4	ENST00000630664.2_5	chr4	156127680	156129630	AC104407.1	-	lncRNA	chr4	156094867	156281450	AC097467.3	+	lncRNA	2499	opposite	3531_ID	chr4	156127681	156129630	1950	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6037	ENST00000511346.1_3	ENST00000515444.5_4	chr4	175056205	175075788	AC012055.1	-	lncRNA	chr4	175015810	175141549	LINC02268	-	lncRNA	19583	same	1322_ID	chr4	175056206	175075788	19583	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6052	ENST00000511717.6_1	ENST00000667608.1_3	chr5	147700765	147719285	SPINK9	+	protein_coding	chr5	147467792	147763432	AC011346.1	-	lncRNA	18650	opposite	12534_ID	chr5	147700766	147719285	18520	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6056	ENST00000511840.1_3	ENST00000666525.1_3	chr5	33011427	33017713	AC034223.2	-	lncRNA	chr5	32888341	33049509	AC010343.3	-	lncRNA	6286	same	2261_ID	chr5	33011428	33017713	6286	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6061	ENST00000511921.2_3	ENST00000653905.1_1	chr5	169735704	169739810	AC034199.1	-	lncRNA	chr5	169734725	169761072	LINC01366	+	lncRNA	4106	opposite	2258_ID	chr5	169735705	169739810	4106	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
6082	ENST00000512428.1_3	ENST00000332884.11_2	chr4	108857186	108862411	AC096564.1	-	lncRNA	chr4	108852704	108874617	CYP2U1	+	protein_coding	5225	opposite	3275_ID	chr4	108857187	108862411	5225	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6088	ENST00000512516.1_3	ENST00000656694.1_3	chr4	178163692	178169927	AC097518.1	-	lncRNA	chr4	177765646	178222312	AC097518.2	-	lncRNA	6235	same	3325_ID	chr4	178163693	178169927	6235	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6089	ENST00000512521.1_1	ENST00000662836.1_3	chr5	3452929	3461774	LINC02162	+	lncRNA	chr5	3357377	3531909	LINC01019	-	lncRNA	8845	opposite	7742_ID	chr5	3452930	3461774	8845	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6100	ENST00000512953.5_2	ENST00000667608.1_3	chr5	147647742	147665817	SPINK13	+	protein_coding	chr5	147467792	147763432	AC011346.1	-	lncRNA	18076	opposite	12530_ID	chr5	147647743	147665817	18075	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6106	ENST00000513155.1_1	ENST00000668018.1_1	chr4	80517695	80518327	AC092542.1	+	lncRNA	chr4	80413746	80544633	LINC00989	+	lncRNA	632	same	3101_ID	chr4	80517696	80518327	632	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6121	ENST00000513660.2_3	ENST00000630664.2_5	chr4	156207313	156208288	AC097467.1	-	lncRNA	chr4	156094867	156281450	AC097467.3	+	lncRNA	975	opposite	3315_ID	chr4	156207314	156208288	975	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6122	ENST00000513673.1_3	ENST00000637926.1_1	chr5	37899464	37920971	LINC02117	-	lncRNA	chr5	37839985	37953929	GDNF-AS1	+	lncRNA	21507	opposite	7729_ID	chr5	37899465	37920971	21507	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
6128	ENST00000513926.1_1	ENST00000502645.2_1	chr5	95583479	95614455	AC099509.2	+	lncRNA	chr5	95297704	95966789	AC104123.1	+	lncRNA	30976	same	3372_ID	chr5	95583480	95614455	30976	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6153	ENST00000514586.1_1	ENST00000662290.1_3	chr5	38783681	38792856	AC091435.2	+	lncRNA	chr5	38682682	38845895	OSMR-AS1	-	lncRNA	9175	opposite	2997_ID	chr5	38783682	38792856	9175	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6156	ENST00000514791.1_3	ENST00000510621.5_3	chr5	67096567	67185924	AC024581.1	-	lncRNA	chr5	66995256	67198428	AC106798.1	-	lncRNA	89357	same	2021_ID	chr5	67096568	67185924	89357	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
6179	ENST00000515504.1_2	ENST00000663729.1_3	chr5	67819704	67825834	AC010280.3	+	lncRNA	chr5	67804049	67861342	AC010280.1	-	lncRNA	6130	opposite	1046_ID	chr5	67819705	67825834	6130	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
6189	ENST00000515825.1_3	ENST00000665435.1_1	chr4	174798621	174834403	AC106895.1	-	lncRNA	chr4	174620284	174850676	LINC02269	+	lncRNA	35782	opposite	3673_ID	chr4	174798622	174834403	35782	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
6206	ENST00000515911.1	ENST00000478138.1_3	chr1	64002381	64002441	RNU7-123P	-	snRNA	chr1	63955773	64059392	ITGB3BP	-	processed_transcript	60	same	11708_ID	chr1	64002382	64002441	60	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6219	ENST00000515939.1	ENST00000263228.4_2	chr9	33868537	33868663	RNU4ATAC11P	+	snRNA	chr9	33817157	33920397	UBE2R2	+	protein_coding	126	same	10722_ID	chr9	33868538	33868663	126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6249	ENST00000516050.1	ENST00000417751.5_3	chr2	14414745	14414849	RNU6-1288P	-	snRNA	chr2	13850655	14541087	LINC00276	-	lncRNA	104	same	10982_ID	chr2	14414746	14414849	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6332	ENST00000516273.1	ENST00000475381.7_6	chr3	172420913	172421015	RNU6-547P	+	snRNA	chr3	172348038	172428857	NCEH1	-	protein_coding	102	opposite	11328_ID	chr3	172420914	172421015	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6334	ENST00000516275.1	ENST00000608241.1_1	chr1	242351948	242352091	RN7SKP12	-	misc_RNA	chr1	242310815	242372431	AL591686.2	+	lncRNA	143	opposite	9775_ID	chr1	242351949	242352091	143	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6336	ENST00000516283.1	ENST00000669061.1_1	chr4	13660250	13660337	AC098830.1	+	miRNA	chr4	13655997	14005366	LINC01182	+	lncRNA	87	same	3343_ID	chr4	13660251	13660337	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6382	ENST00000516424.1	ENST00000509479.6_4	chr4	140715278	140715587	RN7SKP253	-	misc_RNA	chr4	140637906	141075338	MAML3	-	protein_coding	309	same	9856_ID	chr4	140715279	140715587	309	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6399	ENST00000516476.1	ENST00000558435.5_1	chr15	45738660	45738722	RNU7-5P	-	snRNA	chr15	45722776	45740959	C15orf48	+	protein_coding	62	opposite	11795_ID	chr15	45738661	45738722	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
6415	ENST00000516524.1	ENST00000373652.7_1	chr2	230802529	230802598	RNU6-964P	-	snRNA	chr2	230787017	230877825	FBXO36	+	protein_coding	69	opposite	11640_ID	chr2	230802530	230802598	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6418	ENST00000516530.1	ENST00000566202.5_4	chr16	71597332	71597431	RNU6-1061P	-	snRNA	chr16	71512872	71598992	ZNF19	-	protein_coding	99	same	10807_ID	chr16	71597333	71597431	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6451	ENST00000516622.1	ENST00000402676.7_4	chr6	151601649	151601747	RNU6-1247P	-	snRNA	chr6	151561101	151679694	AKAP12	+	protein_coding	98	opposite	10945_ID	chr6	151601650	151601747	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6461	ENST00000516657.1	ENST00000434006.2_3	chr3	48357849	48357949	MIR2115	-	miRNA	chr3	48348331	48369831	SPINK8	-	protein_coding	100	same	8177_ID	chr3	48357850	48357949	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6469	ENST00000516678.1	ENST00000402676.7_4	chr6	151619975	151620068	RNY4P20	-	misc_RNA	chr6	151561101	151679694	AKAP12	+	protein_coding	93	opposite	11853_ID	chr6	151619976	151620068	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6477	ENST00000516702.1	ENST00000472193.1_1	chr2	199431368	199431453	AC019330.2	-	miRNA	chr2	199211552	199437305	PLCL1	+	processed_transcript	85	opposite	1705_ID	chr2	199431369	199431453	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6483	ENST00000516724.1	ENST00000509400.5_3	chr5	138557446	138557526	RNU6-572P	+	snRNA	chr5	138456723	138629223	SIL1	-	processed_transcript	80	opposite	11346_ID	chr5	138557447	138557526	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6487	ENST00000516739.1	ENST00000583654.1_5	chr4	99887965	99888024	RNU7-149P	-	snRNA	chr4	99850047	99916145	AC019131.1	+	lncRNA	59	opposite	11726_ID	chr4	99887966	99888024	59	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6498	ENST00000516769.1	ENST00000302291.8_5	chr1	23490445	23490546	RNU6-135P	+	snRNA	chr1	23410522	23504301	LUZP1	-	protein_coding	101	opposite	11024_ID	chr1	23490446	23490546	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6501	ENST00000516774.2	ENST00000639829.1_1	chrX	146331668	146331748	MIR514B	-	miRNA	chrX	146262581	146353412	AL589669.1	+	lncRNA	80	opposite	8848_ID	chrX	146331669	146331748	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6507	ENST00000516795.1	ENST00000281722.8_4	chr4	155711442	155711636	RNU2-44P	+	snRNA	chr4	155702423	155749965	RBM46	+	protein_coding	194	same	10639_ID	chr4	155711443	155711636	194	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6516	ENST00000516819.1	ENST00000588097.5_3	chr17	42384455	42384541	RNU6-453P	+	snRNA	chr17	42376941	42392683	RUNDC3A-AS1	-	lncRNA	86	opposite	11256_ID	chr17	42384456	42384541	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
6523	ENST00000516835.1	ENST00000521334.5_3	chr14	91557420	91557482	RNU7-30P	+	snRNA	chr14	91526676	91636545	DGLUCY	+	protein_coding	62	same	11772_ID	chr14	91557421	91557482	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6548	ENST00000516924.1	ENST00000412203.2_2	chr3	189861444	189861532	AC067718.1	+	miRNA	chr3	189838752	189862896	P3H2-AS1	+	lncRNA	88	same	2373_ID	chr3	189861445	189861532	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6570	ENST00000516970.1	ENST00000472748.5_3	chr2	172713075	172713180	RNU6-182P	-	snRNA	chr2	172700878	172864762	SLC25A12	-	processed_transcript	105	same	11056_ID	chr2	172713076	172713180	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6578	ENST00000516987.1	ENST00000295958.10_6	chr4	39622631	39622693	RNU7-11P	+	snRNA	chr4	39547955	39640485	SMIM14	-	protein_coding	62	opposite	11705_ID	chr4	39622632	39622693	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6601	ENST00000517058.1	ENST00000653909.1_3	chr5	28624763	28624870	RNU6-909P	+	snRNA	chr5	28548241	28809383	AC008825.1	-	lncRNA	107	opposite	11604_ID	chr5	28624764	28624870	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6614	ENST00000517078.1	ENST00000657156.1_1	chr16	89509725	89509832	RNU6-430P	+	snRNA	chr16	89497395	89520086	AC092120.3	+	lncRNA	107	same	11233_ID	chr16	89509726	89509832	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6627	ENST00000517113.1	ENST00000530763.5_3	chr11	41144456	41144562	RNU6-365P	-	snRNA	chr11	40135842	41481323	LRRC4C	-	protein_coding	106	same	11184_ID	chr11	41144457	41144562	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6660	ENST00000517209.1	ENST00000658247.1_1	chr13	61390830	61390923	RNY4P31	-	misc_RNA	chr13	61193158	61750892	LINC00378	+	lncRNA	93	opposite	11860_ID	chr13	61390831	61390923	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6666	ENST00000517214.1	ENST00000667084.1_1	chr5	142922078	142922152	RNU7-156P	-	snRNA	chr5	142910895	142939707	AC016598.2	+	lncRNA	74	opposite	11731_ID	chr5	142922079	142922152	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6671	ENST00000517224.1	ENST00000590800.6_4	chr18	45918961	45919021	RNU7-191P	+	snRNA	chr18	45553042	45935754	ZBTB7C	-	protein_coding	60	opposite	11756_ID	chr18	45918962	45919021	60	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6681	ENST00000517244.1	ENST00000663306.1_3	chr12	54209968	54210263	RN7SKP289	+	misc_RNA	chr12	54133394	54291828	AC076968.2	+	lncRNA	295	same	9881_ID	chr12	54209969	54210263	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6692	ENST00000517264.1	ENST00000274341.9_4	chr5	82981684	82981837	RN7SKP295	+	misc_RNA	chr5	82933623	83016674	HAPLN1	-	protein_coding	153	opposite	9886_ID	chr5	82981685	82981837	153	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6708	ENST00000517290.1	ENST00000531398.1_3	chr11	111253816	111253944	RNU2-60P	+	snRNA	chr11	111228250	111320706	POU2AF1	-	protein_coding	128	opposite	10649_ID	chr11	111253817	111253944	128	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6719	ENST00000517505.1_3	ENST00000667296.1_1	chr8	91605031	91618293	LINC01030	-	lncRNA	chr8	91233724	91700091	LINC00534	+	lncRNA	13262	opposite	7592_ID	chr8	91605032	91618293	13262	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6722	ENST00000517582.5_3	ENST00000521585.5_1	chr5	173508508	173513562	AC113423.2	-	lncRNA	chr5	173472746	173670504	NSG2	+	protein_coding	5113	opposite	3856_ID	chr5	173508509	173513562	5054	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6731	ENST00000517981.5_3	ENST00000521564.1_1	chr8	87076307	87100850	PSKH2	-	processed_transcript	chr8	86999551	87111315	ATP6V0D2	+	protein_coding	41513	opposite	9665_ID	chr8	87076308	87100850	24543	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
6737	ENST00000518064.1_3	ENST00000518592.5_1	chr8	62212722	62213628	AC023866.1	-	lncRNA	chr8	62200530	62414204	CLVS1	+	protein_coding	906	opposite	1981_ID	chr8	62212723	62213628	906	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	1	4
6757	ENST00000518536.1_3	ENST00000520369.5_1	chr8	59004000	59018853	AC027698.1	-	lncRNA	chr8	58907126	59116838	FAM110B	+	processed_transcript	14853	opposite	2229_ID	chr8	59004001	59018853	14853	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6769	ENST00000518817.1_4	ENST00000641158.1_1	chr3	191178951	191179245	PYDC2	+	protein_coding	chr3	191143314	191308886	AC073365.1	+	lncRNA	294	same	9688_ID	chr3	191178952	191179245	294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6772	ENST00000518927.1_3	ENST00000518180.1_1	chr8	106155087	106200834	AC021546.1	-	lncRNA	chr8	105715946	106431488	ZFPM2	+	processed_transcript	45747	opposite	1795_ID	chr8	106155088	106200834	45747	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6781	ENST00000519364.5_3	ENST00000519689.1_3	chr8	24347824	24372341	AC024958.1	-	lncRNA	chr8	24158397	24769586	AC120193.1	-	lncRNA	24545	same	2041_ID	chr8	24347825	24372341	24517	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6783	ENST00000519366.1_1	ENST00000655917.1_1	chr8	96517633	96539752	AC083836.1	+	lncRNA	chr8	96281062	96815049	C8orf37-AS1	+	lncRNA	22119	same	2717_ID	chr8	96517634	96539752	22119	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6793	ENST00000519755.1_1	ENST00000520067.5_4	chr5	172381909	172384165	AC008429.3	+	lncRNA	chr5	172381788	172385781	AC008429.1	-	lncRNA	2256	opposite	728_ID	chr5	172381910	172384165	2256	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
6803	ENST00000520010.5_3	ENST00000568235.5_3	chr16	20634807	20709066	ACSM1	-	protein_coding	chr16	20621564	20787242	ACSM3	+	protein_coding	75654	opposite	4338_ID	chr16	20634808	20709066	74259	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6813	ENST00000520429.6_5	ENST00000623858.2_2	chr6	99990262	100016536	CCNC	-	protein_coding	chr6	99968851	100037775	TSTD3	+	processed_transcript	26439	opposite	6585_ID	chr6	99990263	100016536	26274	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
6816	ENST00000520587.1_1	ENST00000521585.5_1	chr5	173600103	173608817	AC011333.1	+	lncRNA	chr5	173472746	173670504	NSG2	+	protein_coding	8714	same	1190_ID	chr5	173600104	173608817	8714	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6825	ENST00000520838.1_3	ENST00000522227.5_1	chr5	138080122	138088998	AC034243.1	-	lncRNA	chr5	137946666	138145794	CTNNA1	+	protein_coding	8876	opposite	2266_ID	chr5	138080123	138088998	8876	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6829	ENST00000520870.1_1	ENST00000520433.5_3	chr8	106838797	106846266	AC090802.1	+	lncRNA	chr8	106792473	107072752	ZFPM2-AS1	-	lncRNA	7469	opposite	2938_ID	chr8	106838798	106846266	7469	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6833	ENST00000521006.5_1	ENST00000523148.5_3	chr10	102729279	102745373	SEMA4G	+	nonsense_mediated_decay	chr10	102729214	102746953	MRPL43	-	protein_coding	16354	opposite	12032_ID	chr10	102729280	102745373	16094	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	4
6836	ENST00000521016.1_3	ENST00000520920.5_3	chr8	19111750	19114844	AC068880.2	-	lncRNA	chr8	18942501	19116979	AC100849.1	-	lncRNA	3094	same	2454_ID	chr8	19111751	19114844	3094	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6842	ENST00000521298.2_3	ENST00000649472.1_1	chr8	9037760	9040029	AC022784.2	-	lncRNA	chr8	9009204	9060360	AC022784.1	+	lncRNA	2269	opposite	1904_ID	chr8	9037761	9040029	2269	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6849	ENST00000521596.1_3	ENST00000521691.5_1	chr5	65439983	65440623	AC025442.1	-	lncRNA	chr5	65435798	65458101	SREK1	+	protein_coding	640	opposite	2089_ID	chr5	65439984	65440623	640	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6851	ENST00000521680.5_3	ENST00000522676.5_6	chr4	98255785	98554962	AC034154.1	-	lncRNA	chr4	98105243	98893505	STPG2	-	protein_coding	299189	same	2252_ID	chr4	98255786	98554962	299177	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
6858	ENST00000521872.1_3	ENST00000675821.1_1	chr8	75259991	75262285	AC103952.1	-	lncRNA	chr8	75232847	75279092	GDAP1	+	protein_coding	2294	opposite	3490_ID	chr8	75259992	75262285	2294	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6873	ENST00000522426.1_1	ENST00000521805.1_3	chr5	163636636	163638898	AC008662.2	+	lncRNA	chr5	163546103	163661103	AC008662.1	-	lncRNA	2262	opposite	767_ID	chr5	163636637	163638898	2262	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6875	ENST00000522494.1_2	ENST00000519250.5_3	chr8	81035086	81039905	AC009686.1	+	lncRNA	chr8	80963778	81143467	TPD52	-	processed_transcript	4819	opposite	986_ID	chr8	81035087	81039905	4819	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6901	ENST00000523277.6_1	ENST00000523081.2_4	chr8	41386767	41402549	GINS4	+	protein_coding	chr8	41367111	41435940	AC009630.1	-	lncRNA	15813	opposite	7118_ID	chr8	41386768	41402549	15782	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
6902	ENST00000523279.1_3	ENST00000521585.5_1	chr5	173483062	173483588	AC113423.1	-	lncRNA	chr5	173472746	173670504	NSG2	+	protein_coding	526	opposite	3855_ID	chr5	173483063	173483588	526	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
6909	ENST00000523505.3_7	ENST00000490856.5_3	chr7	106294805	106301604	CCDC71L	-	protein_coding	chr7	106012696	106372895	AC004917.1	-	lncRNA	6799	same	6578_ID	chr7	106294806	106301604	6799	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6917	ENST00000523724.1_3	ENST00000662661.1_1	chr8	57449316	57453056	AC013644.1	-	lncRNA	chr8	57358795	57469072	AC012349.1	+	lncRNA	3740	opposite	1458_ID	chr8	57449317	57453056	3740	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
6943	ENST00000524493.1_1	ENST00000530763.5_3	chr11	41416144	41448054	AC090138.1	+	lncRNA	chr11	40135842	41481323	LRRC4C	-	protein_coding	31910	opposite	2873_ID	chr11	41416145	41448054	31910	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
6958	ENST00000525563.1_1	ENST00000308064.7_4	chr11	45673078	45674241	AC087442.1	+	lncRNA	chr11	45669238	45687172	CHST1	-	protein_coding	1163	opposite	2818_ID	chr11	45673079	45674241	1163	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
6959	ENST00000525594.1_3	ENST00000532481.5_1	chr11	77540699	77583308	AP002812.2	-	lncRNA	chr11	77532154	77629478	AAMDC	+	protein_coding	42609	opposite	6206_ID	chr11	77540700	77583308	42609	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7029	ENST00000527884.5_3	ENST00000527978.1_1	chr11	19245609	19263167	E2F8	-	protein_coding	chr11	19218321	19302973	CSRP3-AS1	+	lncRNA	17558	opposite	6866_ID	chr11	19245610	19263167	17558	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7049	ENST00000528614.1_3	ENST00000531398.1_3	chr11	111284966	111288911	AP002008.3	-	lncRNA	chr11	111228250	111320706	POU2AF1	-	protein_coding	3945	same	6176_ID	chr11	111284967	111288911	3945	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
7106	ENST00000530667.1_1	ENST00000524391.6_4	chr8	110986171	110987010	AC027451.1	+	lncRNA	chr8	110975864	110988000	KCNV1	-	protein_coding	839	opposite	2211_ID	chr8	110986172	110987010	839	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	2	4
7113	ENST00000530908.5_1	ENST00000535199.5_3	chr21	37442238	37445464	CBR1	+	protein_coding	chr21	37441939	37498938	AP000688.1	-	lncRNA	3226	opposite	6558_ID	chr21	37442239	37445464	3226	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
7118	ENST00000530972.1_3	ENST00000532481.5_1	chr11	77577457	77581137	AP002812.5	-	lncRNA	chr11	77532154	77629478	AAMDC	+	protein_coding	3680	opposite	6209_ID	chr11	77577458	77581137	3680	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
7123	ENST00000531225.1_5	ENST00000675888.1_2	chr8	145576887	145579269	AC233992.2	-	nonsense_mediated_decay	chr8	145557618	145584912	SLC52A2	+	protein_coding	2382	opposite	4260_ID	chr8	145576888	145579269	2382	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
7124	ENST00000531241.1_3	ENST00000284292.11_2	chr11	124614529	124616233	AP000866.5	-	lncRNA	chr11	124609837	124617106	NRGN	+	protein_coding	1704	opposite	6040_ID	chr11	124614530	124616233	1704	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	4
7170	ENST00000532798.3_5	ENST00000499625.1_1	chr11	22868467	22882020	CCDC179	-	protein_coding	chr11	22850967	22966939	AC006299.1	+	lncRNA	13553	opposite	6570_ID	chr11	22868468	22882020	13553	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
7174	ENST00000532913.1_3	ENST00000216139.10_2	chr22	51179020	51181948	AC002056.2	-	lncRNA	chr22	51176631	51183767	ACR	+	protein_coding	2928	opposite	28_ID	chr22	51179021	51181948	2928	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
7181	ENST00000533329.1_3	ENST00000658004.1_1	chr11	82783443	82808238	AP001767.2	-	lncRNA	chr11	82783107	82818831	RAB30-DT	+	lncRNA	24795	opposite	6159_ID	chr11	82783444	82808238	24795	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7189	ENST00000533531.1_2	ENST00000526615.6_2	chr11	43590855	43591945	MIR670HG	+	lncRNA	chr11	43577985	43694943	AC068205.1	+	lncRNA	1090	same	9070_ID	chr11	43590856	43591945	1090	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7253	ENST00000537293.1_1	ENST00000536744.5_1	chr12	22895515	22896025	AC084819.1	+	lncRNA	chr12	22852874	23041867	AC084816.1	+	lncRNA	510	same	2762_ID	chr12	22895516	22896025	510	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
7261	ENST00000537827.2_1	ENST00000267202.7_4	chr12	123349881	123351568	AC027290.1	+	lncRNA	chr12	123349876	123380671	VPS37B	-	protein_coding	1687	opposite	2207_ID	chr12	123349882	123351568	1687	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
7262	ENST00000537935.1_2	ENST00000412903.1_5	chr11	5877903	5878964	OR52E8	-	protein_coding	chr11	5699549	5959849	TRIM5	-	protein_coding	1061	same	9445_ID	chr11	5877904	5878964	1061	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7273	ENST00000538640.2_1	ENST00000656583.1_3	chr12	27857500	27861298	AC009509.2	+	lncRNA	chr12	27849320	27863736	AC009509.1	-	lncRNA	3798	opposite	965_ID	chr12	27857501	27861298	3798	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7288	ENST00000539391.1_1	ENST00000389727.8_4	chr12	124690773	124693564	AC026358.1	+	lncRNA	chr12	124457787	124800568	RFLNA	+	protein_coding	2791	same	2138_ID	chr12	124690774	124693564	2791	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
7299	ENST00000539734.1_3	ENST00000256953.6_4	chr12	15265296	15267632	RERG-IT1	-	lncRNA	chr12	15260716	15374351	RERG	-	protein_coding	2336	same	9731_ID	chr12	15265297	15267632	2336	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
7304	ENST00000539988.1_1	ENST00000651487.1_3	chr12	12821915	12838009	AC008115.2	+	lncRNA	chr12	12813823	12849117	GPR19	-	protein_coding	16094	opposite	701_ID	chr12	12821916	12838009	16094	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
7314	ENST00000540761.5_3	ENST00000650195.1_1	chr12	67964976	67983767	LINC02442	-	lncRNA	chr12	67836884	67984551	LINC02408	+	lncRNA	18791	opposite	7775_ID	chr12	67964977	67983767	18791	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
7326	ENST00000541892.1_1	ENST00000539036.5_1	chr12	16720344	16726874	AC007552.2	+	lncRNA	chr12	16500585	16762193	MGST1	+	processed_transcript	6530	same	596_ID	chr12	16720345	16726874	6530	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
7333	ENST00000542197.1_3	ENST00000618330.3_5	chr15	85154919	85158200	AC048382.1	-	lncRNA	chr15	85141039	85177219	AC048382.5	-	lncRNA	3281	same	2313_ID	chr15	85154920	85158200	3281	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7340	ENST00000542839.1_3	ENST00000426886.1_3	chr1	35227026	35253698	AL121988.1	-	lncRNA	chr1	35178337	35325336	SMIM12	-	nonsense_mediated_decay	26672	same	4790_ID	chr1	35227027	35253698	26672	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7345	ENST00000543308.1_1	ENST00000537192.1_1	chr12	5475213	5476940	AC007848.2	-	lncRNA	chr12	5399645	5487520	AC006206.2	+	lncRNA	1727	opposite	650_ID	chr12	5475214	5476940	1727	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7370	ENST00000544279.1_3	ENST00000403681.7_5	chr12	66328556	66342259	AC090673.1	-	lncRNA	chr12	66218262	66360071	HMGA2	+	protein_coding	90467	opposite	2928_ID	chr12	66328557	66342259	13703	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
7378	ENST00000544842.1_1	ENST00000537192.1_1	chr12	5425126	5428513	AC006206.1	+	lncRNA	chr12	5399645	5487520	AC006206.2	+	lncRNA	3387	same	436_ID	chr12	5425127	5428513	3387	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7397	ENST00000545912.1_1	ENST00000648353.1_1	chr11	95431249	95433787	AP000820.1	+	lncRNA	chr11	95304203	95481879	AP000820.2	+	lncRNA	2538	same	6034_ID	chr11	95431250	95433787	2538	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
7411	ENST00000546495.5_1	ENST00000572547.1_3	chr17	6917813	6920694	C17orf49	+	protein_coding	chr17	6888812	6922733	AC040977.2	-	lncRNA	3031	opposite	6485_ID	chr17	6917814	6920694	2881	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7418	ENST00000546725.1_1	ENST00000548187.1_3	chr12	91311799	91342446	LINC00615	+	lncRNA	chr12	91299398	91348951	CCER1	-	processed_transcript	30647	opposite	7566_ID	chr12	91311800	91342446	30647	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
7424	ENST00000546954.2_4	ENST00000551806.1_4	chr12	120881766	120884187	TRIAP1	-	protein_coding	chr12	120876000	120897809	AL021546.1	+	protein_coding	2421	opposite	12776_ID	chr12	120881767	120884187	2421	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7429	ENST00000547033.1_1	ENST00000611864.4_4	chr12	86352464	86354725	AC016993.1	+	lncRNA	chr12	86349444	86443501	MGAT4C	-	protein_coding	2261	opposite	1578_ID	chr12	86352465	86354725	2261	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
7446	ENST00000547602.1_3	ENST00000546738.1_1	chr12	48413553	48419165	AC004801.3	-	lncRNA	chr12	48405086	48419252	AC004801.4	+	lncRNA	5612	opposite	166_ID	chr12	48413554	48419165	5612	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
7454	ENST00000548029.1_3	ENST00000550723.1_1	chr12	73597594	73600615	AC090503.1	-	lncRNA	chr12	73552969	73602097	LINC02444	+	lncRNA	3021	opposite	2896_ID	chr12	73597595	73600615	3021	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
7457	ENST00000548199.1_3	ENST00000550089.2_2	chr14	36416761	36419250	AL133304.1	-	lncRNA	chr14	36367141	36534278	AL133304.3	+	lncRNA	2489	opposite	4837_ID	chr14	36416762	36419250	2489	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7468	ENST00000548615.1_2	ENST00000556750.5_3	chr12	55886161	55887100	OR6C68	+	protein_coding	chr12	55828538	55979255	AC122685.1	-	lncRNA	939	opposite	9468_ID	chr12	55886162	55887100	939	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7471	ENST00000548702.1_3	ENST00000552856.1_3	chr12	76087789	76092596	AC078820.1	-	lncRNA	chr12	75956981	76377795	AC078923.1	-	lncRNA	4807	same	2590_ID	chr12	76087790	76092596	4807	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7475	ENST00000548885.1_3	ENST00000547348.5_1	chr12	72439928	72451157	AC090109.1	-	lncRNA	chr12	72425071	72580398	TPH2	+	processed_transcript	11229	opposite	2869_ID	chr12	72439929	72451157	11229	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7476	ENST00000548900.1_3	ENST00000261267.7_2	chr12	69747272	69748005	AC020656.1	-	lncRNA	chr12	69742160	69748014	LYZ	+	protein_coding	733	opposite	1717_ID	chr12	69747273	69748005	733	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
7483	ENST00000549147.1_1	ENST00000550412.5_2	chr12	56109821	56113871	BLOC1S1	+	protein_coding	chr12	56109819	56118487	AC009779.3	+	protein_coding	4051	same	6421_ID	chr12	56109822	56113871	4050	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
7485	ENST00000549241.1_3	ENST00000357429.10_4	chr7	1094995	1098897	AC073957.2	-	lncRNA	chr7	1036621	1177893	C7orf50	-	protein_coding	3902	same	2558_ID	chr7	1094996	1098897	3902	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7498	ENST00000549775.5_1	ENST00000572547.1_3	chr17	6915953	6920821	RNASEK-C17orf49	+	retained_intron	chr17	6888812	6922733	AC040977.2	-	lncRNA	4886	opposite	10537_ID	chr17	6915954	6920821	4868	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7502	ENST00000549888.1_1	ENST00000552856.1_3	chr12	76358219	76360842	AC011611.2	+	lncRNA	chr12	75956981	76377795	AC078923.1	-	lncRNA	2623	opposite	1271_ID	chr12	76358220	76360842	2623	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
7509	ENST00000550468.2_3	ENST00000541364.5_1	chr12	49658938	49667089	AC125611.3	-	lncRNA	chr12	49621708	49667117	TUBA1C	+	protein_coding	8151	opposite	4018_ID	chr12	49658939	49667089	8151	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	4
7547	ENST00000552525.1_3	ENST00000549621.5_4	chr12	113623428	113629966	AC089999.1	-	lncRNA	chr12	113623330	113630169	RITA1	+	protein_coding	6538	opposite	2861_ID	chr12	113623429	113629966	6538	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	4
7556	ENST00000552785.1_1	ENST00000550474.5_1	chr12	54747575	54860769	AC079313.1	+	lncRNA	chr12	54747444	54891472	AC079313.2	+	lncRNA	113194	same	2641_ID	chr12	54747576	54860769	113194	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7558	ENST00000552806.1_3	ENST00000199280.4_2	chr12	50348421	50349908	AC025154.1	-	lncRNA	chr12	50344519	50352661	AQP2	+	protein_coding	1487	opposite	2049_ID	chr12	50348422	50349908	1487	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	4
7561	ENST00000553027.1_1	ENST00000398092.4_3	chr12	49315300	49320257	FKBP11	-	retained_intron	chr12	49297285	49351148	AC073610.2	-	protein_coding	4957	same	7029_ID	chr12	49315301	49320257	4957	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
7569	ENST00000553319.1	ENST00000422956.6_1	chr2	113998306	113998987	RP11-65I12.1	+	antisense	chr2	113993112	114034158	PAX8-AS1	+	lncRNA	681	same	11926_ID	chr2	113998307	113998987	681	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
7593	ENST00000554000.2_3	ENST00000557398.2_3	chr15	93242269	93267507	AC091544.6	-	lncRNA	chr15	93162531	93353028	FAM174B	-	protein_coding	25238	same	3000_ID	chr15	93242270	93267507	25238	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7621	ENST00000554753.2_2	ENST00000557547.1_3	chr14	85852270	85855109	LINC02329	+	lncRNA	chr14	85828800	85983278	AL049775.2	-	lncRNA	2839	opposite	7761_ID	chr14	85852271	85855109	2839	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
7630	ENST00000555212.1_1	ENST00000262238.10_3	chr14	100730117	100731742	AL157871.5	+	lncRNA	chr14	100705480	100749125	YY1	+	protein_coding	1625	same	5082_ID	chr14	100730118	100731742	1625	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7643	ENST00000555514.1_3	ENST00000557647.5_1	chr14	55792551	55806219	AL158801.3	-	lncRNA	chr14	55738928	55821802	FBXO34	+	processed_transcript	13668	opposite	5114_ID	chr14	55792552	55806219	13668	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7677	ENST00000556526.1_2	ENST00000671014.1_1	chr14	21058351	21058982	RNASE12	-	protein_coding	chr14	21055817	21075380	AL163195.2	+	lncRNA	631	opposite	10529_ID	chr14	21058352	21058982	631	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7705	ENST00000557350.1_1	ENST00000555425.5_3	chr14	39572343	39573016	SEC23A-AS1	+	lncRNA	chr14	39562388	39578850	SEC23A	-	protein_coding	673	opposite	12027_ID	chr14	39572344	39573016	673	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7708	ENST00000557426.1_3	ENST00000659702.1_1	chr15	26295684	26297423	AC100836.1	-	lncRNA	chr15	26147265	26298270	LINC02346	+	lncRNA	1739	opposite	3436_ID	chr15	26295685	26297423	1739	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
7710	ENST00000557474.1_1	ENST00000536837.1_3	chr12	121829764	121837662	AC048337.1	+	lncRNA	chr12	121783801	121837699	ANAPC5	-	protein_coding	7898	opposite	2308_ID	chr12	121829765	121837662	7898	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
7711	ENST00000557499.1_1	ENST00000560360.2_4	chr15	98825303	98829136	AC015722.1	+	lncRNA	chr15	98581799	98836428	AC022523.1	-	lncRNA	3833	opposite	1473_ID	chr15	98825304	98829136	3833	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7728	ENST00000558044.1_1	ENST00000559729.5_3	chr15	85229114	85230177	AC115102.1	+	lncRNA	chr15	85212768	85259691	SEC11A	-	protein_coding	1063	opposite	3885_ID	chr15	85229115	85230177	1063	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7731	ENST00000558141.5_1	ENST00000559211.1_1	chr15	81846343	81989121	AC023034.1	+	lncRNA	chr15	81719788	82047558	AC060809.1	+	lncRNA	142778	same	1927_ID	chr15	81846344	81989121	142778	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7791	ENST00000559410.1_3	ENST00000302006.4_2	chr5	3596324	3600302	AC016595.1	-	lncRNA	chr5	3595945	3601517	IRX1	+	protein_coding	3978	opposite	1541_ID	chr5	3596325	3600302	3978	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
7825	ENST00000560104.2_3	ENST00000655138.1_3	chr11	121986047	121986923	BLID	-	protein_coding	chr11	121959929	122324427	MIR100HG	-	lncRNA	876	same	6420_ID	chr11	121986048	121986923	876	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
7827	ENST00000560153.2_1	ENST00000665121.1_3	chr15	88120159	88123097	LINC00052	+	lncRNA	chr15	87869059	88247056	AC020687.1	-	lncRNA	2938	opposite	7528_ID	chr15	88120160	88123097	2938	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
7850	ENST00000560675.2_3	ENST00000644461.1_2	chr15	39048752	39051614	AC022929.1	-	lncRNA	chr15	38920260	39472700	LINC02694	+	lncRNA	2862	opposite	1919_ID	chr15	39048753	39051614	2862	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
7868	ENST00000561182.1_1	ENST00000559783.2_3	chr15	61890712	61897440	AC104574.1	+	lncRNA	chr15	61590989	61927648	AC104574.2	-	lncRNA	6728	opposite	3561_ID	chr15	61890713	61897440	6728	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
7886	ENST00000561638.1_3	ENST00000675888.1_2	chr8	145575877	145577730	TMEM249	-	retained_intron	chr8	145557618	145584912	SLC52A2	+	protein_coding	2697	opposite	12728_ID	chr8	145575878	145577730	1853	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
7892	ENST00000561777.1_1	ENST00000658217.1_1	chr15	76051841	76054746	AC019294.3	-	lncRNA	chr15	76050831	76055663	AC019294.2	+	lncRNA	2905	opposite	1702_ID	chr15	76051842	76054746	2905	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7893	ENST00000561778.2_1	ENST00000587150.3_4	chr19	35302492	35305249	AC008555.1	-	lncRNA	chr19	35279430	35309615	LINC01801	-	lncRNA	2757	same	746_ID	chr19	35302493	35305249	2757	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
7902	ENST00000561915.1_1	ENST00000658889.1_1	chr2	207685913	207687018	AC008269.2	-	lncRNA	chr2	207663048	207791600	AC008269.1	+	lncRNA	1105	opposite	717_ID	chr2	207685914	207687018	1105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
7904	ENST00000561938.1_1	ENST00000402655.6_1	chr16	79028241	79038627	AC027279.2	+	lncRNA	chr16	78133550	79246564	WWOX	+	protein_coding	10386	same	2204_ID	chr16	79028242	79038627	10386	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
7907	ENST00000561979.1_3	ENST00000568581.5_4	chr16	71915455	71916176	AC009127.1	-	lncRNA	chr16	71879898	71950997	IST1	+	protein_coding	721	opposite	894_ID	chr16	71915456	71916176	721	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
7936	ENST00000562685.1_1	ENST00000402655.6_1	chr16	79139853	79144779	AC009145.2	+	lncRNA	chr16	78133550	79246564	WWOX	+	protein_coding	4926	same	908_ID	chr16	79139854	79144779	4926	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
7940	ENST00000562756.1_1	ENST00000300105.7_4	chr22	36956916	36958962	AL022313.4	-	lncRNA	chr22	36956903	37099797	CACNG2	-	protein_coding	2046	same	4474_ID	chr22	36956917	36958962	2046	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
7953	ENST00000562873.1_1	ENST00000562840.1_3	chr16	87249520	87250058	AC136285.2	+	lncRNA	chr16	87117167	87336368	C16orf95	-	processed_transcript	538	opposite	4147_ID	chr16	87249521	87250058	538	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
7976	ENST00000563230.1_1	ENST00000402655.6_1	chr16	79123946	79135651	AC009145.1	+	lncRNA	chr16	78133550	79246564	WWOX	+	protein_coding	11705	same	907_ID	chr16	79123947	79135651	11705	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
7984	ENST00000563408.1_3	ENST00000402655.6_1	chr16	78529822	78540465	AC046158.1	-	lncRNA	chr16	78133550	79246564	WWOX	+	protein_coding	10643	opposite	2305_ID	chr16	78529823	78540465	10643	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
7987	ENST00000563464.1_1	ENST00000565543.2_4	chr15	72908150	72910591	AC100827.4	+	lncRNA	chr15	72900821	72929303	LINC02259	-	lncRNA	2441	opposite	3428_ID	chr15	72908151	72910591	2441	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
8024	ENST00000564271.2_1	ENST00000567404.5_2	chr16	21638062	21638890	AC005632.3	+	lncRNA	chr16	21608542	21666645	METTL9	+	protein_coding	828	same	325_ID	chr16	21638063	21638890	828	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
8027	ENST00000564390.1_1	ENST00000569832.5_3	chr16	1115239	1116502	AC009041.2	+	lncRNA	chr16	1114092	1128673	SSTR5-AS1	-	lncRNA	1263	opposite	846_ID	chr16	1115240	1116502	1263	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	4	4
8079	ENST00000565513.1_3	ENST00000568294.5_3	chr15	83782368	83783318	AC024270.2	-	lncRNA	chr15	83781489	83826741	HDGFL3	-	protein_coding	950	same	2009_ID	chr15	83782369	83783318	950	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	4
8116	ENST00000566092.1_1	ENST00000562840.1_3	chr16	87245727	87260036	AC136285.1	+	lncRNA	chr16	87117167	87336368	C16orf95	-	processed_transcript	14309	opposite	4146_ID	chr16	87245728	87260036	14309	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8127	ENST00000566325.1_3	ENST00000359543.8_4	chr16	10670355	10672040	AC027277.2	-	lncRNA	chr16	10622278	10674455	EMP2	-	protein_coding	1685	same	2202_ID	chr16	10670356	10672040	1685	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8131	ENST00000566418.1_1	ENST00000663306.1_3	chr12	54148141	54155888	AC076968.1	+	lncRNA	chr12	54133394	54291828	AC076968.2	+	lncRNA	7747	same	2581_ID	chr12	54148142	54155888	7747	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8145	ENST00000566764.1_1	ENST00000563573.5_3	chr16	22376441	22380368	AC092338.1	+	lncRNA	chr16	22360692	22444986	CDR2	-	protein_coding	3927	opposite	3079_ID	chr16	22376442	22380368	3927	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
8167	ENST00000567158.1_1	ENST00000563573.5_3	chr16	22386207	22389501	AC092338.2	+	lncRNA	chr16	22360692	22444986	CDR2	-	protein_coding	3322	opposite	3080_ID	chr16	22386208	22389501	3294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
8176	ENST00000567261.1_3	ENST00000567684.2_1	chr16	67464569	67465367	AC009061.1	-	lncRNA	chr16	67464554	67470164	HSD11B2	+	processed_transcript	798	opposite	850_ID	chr16	67464570	67465367	798	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
8182	ENST00000567386.1_3	ENST00000402655.6_1	chr16	79111272	79112131	AC009145.3	-	lncRNA	chr16	78133550	79246564	WWOX	+	protein_coding	859	opposite	909_ID	chr16	79111273	79112131	859	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
8192	ENST00000567700.5_1	ENST00000569769.1_4	chr16	1832932	1839184	NUBP2	+	retained_intron	chr16	1828037	1843701	SPSB3	-	protein_coding	6255	opposite	9314_ID	chr16	1832933	1839184	6252	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8205	ENST00000568030.1_3	ENST00000652999.1_1	chr16	9535150	9538842	LINC01177	-	lncRNA	chr16	9459396	9612179	AC012178.1	+	lncRNA	3692	opposite	7617_ID	chr16	9535151	9538842	3692	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8233	ENST00000568523.1_3	ENST00000566202.5_4	chr16	71573736	71575728	AC010547.2	-	lncRNA	chr16	71512872	71598992	ZNF19	-	protein_coding	1992	same	1108_ID	chr16	71573737	71575728	1992	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8244	ENST00000568764.1_1	ENST00000402655.6_1	chr16	78568270	78569545	AC046158.2	+	lncRNA	chr16	78133550	79246564	WWOX	+	protein_coding	1275	same	2306_ID	chr16	78568271	78569545	1275	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
8245	ENST00000568771.1_1	ENST00000565079.5_5	chr16	84529204	84531101	AC022165.1	+	lncRNA	chr16	84522968	84587639	MEAK7	-	protein_coding	1897	opposite	1834_ID	chr16	84529205	84531101	1897	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
8250	ENST00000568885.2_1	ENST00000402655.6_1	chr16	78929257	78933541	AC027279.1	+	lncRNA	chr16	78133550	79246564	WWOX	+	protein_coding	4284	same	2203_ID	chr16	78929258	78933541	4284	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
8258	ENST00000569170.5_4	ENST00000476886.5_1	chr3	150600783	150659530	AC020636.2	-	nonsense_mediated_decay	chr3	150570270	150798513	CLRN1-AS1	+	lncRNA	58747	opposite	1715_ID	chr3	150600784	150659530	58747	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8260	ENST00000569215.1_1	ENST00000564797.5_1	chr16	10445296	10446609	AC131649.1	-	lncRNA	chr16	10420290	10513477	ATF7IP2	+	processed_transcript	1313	opposite	4092_ID	chr16	10445297	10446609	1313	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8263	ENST00000569271.1_1	ENST00000566202.5_4	chr16	71547765	71551752	AC010547.3	+	lncRNA	chr16	71512872	71598992	ZNF19	-	protein_coding	3987	opposite	1109_ID	chr16	71547766	71551752	3987	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8289	ENST00000570073.2_1	ENST00000531864.6_1	chr16	31799522	31802314	AC002519.1	+	lncRNA	chr16	31724567	31806190	ZNF720	+	processed_transcript	2792	same	60_ID	chr16	31799523	31802314	2792	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8291	ENST00000570118.1_3	ENST00000652999.1_1	chr16	9539866	9549362	LINC01195	-	lncRNA	chr16	9459396	9612179	AC012178.1	+	lncRNA	9496	opposite	7618_ID	chr16	9539867	9549362	9496	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8296	ENST00000570286.5_3	ENST00000562840.1_3	chr16	87296364	87326044	AC010531.4	-	lncRNA	chr16	87117167	87336368	C16orf95	-	processed_transcript	29680	same	1094_ID	chr16	87296365	87326044	29680	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8318	ENST00000571134.2_4	ENST00000634974.2_2	chr17	9674754	9694909	DHRS7C	-	protein_coding	chr17	9667502	9708417	AC027045.2	+	lncRNA	20159	opposite	6796_ID	chr17	9674755	9694909	20155	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
8323	ENST00000571512.1_1	ENST00000573780.5_4	chr17	204527	206673	AC129507.3	+	lncRNA	chr17	131559	236045	RPH3AL	-	protein_coding	2146	opposite	4051_ID	chr17	204528	206673	2146	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8336	ENST00000572358.1_1	ENST00000539517.7_4	chr14	27061952	27063723	AL079343.1	-	lncRNA	chr14	26912295	27067239	NOVA1	-	protein_coding	1771	same	4675_ID	chr14	27061953	27063723	1771	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8366	ENST00000573856.1_1	ENST00000255759.11_4	chr16	15978885	15980015	AC130651.1	+	lncRNA	chr16	15959575	15982460	CEP20	-	protein_coding	1130	opposite	4074_ID	chr16	15978886	15980015	1130	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8420	ENST00000576477.1_1	ENST00000445617.2_1	chr17	9368058	9370739	AC087501.2	+	lncRNA	chr17	9355513	9373331	AC087501.1	+	lncRNA	2681	same	2827_ID	chr17	9368059	9370739	2681	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
8441	ENST00000577204.1	ENST00000666093.1_3	chr6	153177800	153177879	AL133269.1	-	miRNA	chr6	153076037	153196967	LINC02840	-	lncRNA	79	same	4833_ID	chr6	153177801	153177879	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8451	ENST00000577272.1	ENST00000434013.6_3	chr14	74946835	74946907	MIR4709	-	miRNA	chr14	74942894	74960010	NPC2	-	protein_coding	72	same	8697_ID	chr14	74946836	74946907	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
8462	ENST00000577309.1_1	ENST00000654263.1_3	chr17	21359824	21363527	AC068418.2	-	lncRNA	chr17	21334277	21476658	LINC02693	-	lncRNA	3703	same	2410_ID	chr17	21359825	21363527	3703	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8503	ENST00000577547.1	ENST00000376131.8_4	chr13	102698283	102698354	MIR4705	-	miRNA	chr13	102363153	103054124	FGF14	-	protein_coding	71	same	8691_ID	chr13	102698284	102698354	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8507	ENST00000577579.1	ENST00000522227.5_1	chr5	138099908	138100243	RN7SL867P	+	misc_RNA	chr5	137946666	138145794	CTNNA1	+	protein_coding	335	same	10492_ID	chr5	138099909	138100243	335	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8538	ENST00000577690.1	ENST00000283928.10_4	chr7	27920105	27920397	RN7SL365P	+	misc_RNA	chr7	27870195	28220414	JAZF1	-	protein_coding	292	opposite	10132_ID	chr7	27920106	27920397	292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
8546	ENST00000577717.1	ENST00000305249.10_4	chr2	75317938	75318041	MIR5000	+	miRNA	chr2	75273589	75426646	TACR1	-	protein_coding	103	opposite	8804_ID	chr2	75317939	75318041	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8548	ENST00000577728.1	ENST00000657609.1_1	chr13	52126724	52126803	MIR4703	+	miRNA	chr13	52026499	52128814	INTS6-AS1	+	lncRNA	79	same	8690_ID	chr13	52126725	52126803	79	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	4	4
8557	ENST00000577769.1	ENST00000530151.5_5	chr11	47579087	47579385	RN7SL652P	-	misc_RNA	chr11	47508325	47587072	CELF1	-	protein_coding	298	same	10338_ID	chr11	47579088	47579385	298	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8581	ENST00000577905.1	ENST00000590646.5_3	chr19	2020328	2020580	RN7SL226P	+	misc_RNA	chr19	1993099	2034880	BTBD2	-	protein_coding	252	opposite	10032_ID	chr19	2020329	2020580	252	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8585	ENST00000577917.5_1	ENST00000579649.5_1	chr19	5680775	5688533	HSD11B1L	+	protein_coding	chr19	5674957	5691678	RPL36	+	protein_coding	7920	same	7304_ID	chr19	5680776	5688533	7758	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8586	ENST00000577931.1	ENST00000355114.9_4	chr19	36680095	36680380	RN7SL287P	-	misc_RNA	chr19	36673195	36737159	ZNF565	-	protein_coding	285	same	10081_ID	chr19	36680096	36680380	285	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
8605	ENST00000578045.1	ENST00000377205.6_2	chr1	10027438	10027516	MIR5697	+	miRNA	chr1	10003532	10045556	NMNAT1	+	protein_coding	78	same	8969_ID	chr1	10027439	10027516	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8616	ENST00000578136.1	ENST00000339464.9_5	chr22	46372757	46372834	CR536603.1	-	miRNA	chr22	46316245	46373042	WNT7B	-	protein_coding	77	same	6706_ID	chr22	46372758	46372834	77	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	4
8629	ENST00000578216.1_1	ENST00000284240.10_4	chr11	119288660	119289824	THY1-AS1	+	lncRNA	chr11	119286185	119293882	THY1	-	protein_coding	1164	opposite	12693_ID	chr11	119288661	119289824	1164	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	4
8631	ENST00000578226.1_1	ENST00000316615.9_3	chr17	73390203	73391044	AC011933.3	+	lncRNA	chr17	73314156	73401790	GRB2	-	protein_coding	841	opposite	1310_ID	chr17	73390204	73391044	841	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8633	ENST00000578233.1	ENST00000261560.10_2	chr19	21238808	21238886	AC012627.1	+	miRNA	chr19	21203462	21242856	ZNF430	+	protein_coding	78	same	1418_ID	chr19	21238809	21238886	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
8636	ENST00000578248.1	ENST00000257408.5_2	chr4	39413529	39413594	MIR5591	+	miRNA	chr4	39408549	39453153	KLB	+	protein_coding	65	same	8944_ID	chr4	39413530	39413594	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8660	ENST00000578405.1	ENST00000533459.1_3	chr11	103720633	103720708	MIR4693	+	miRNA	chr11	103546721	103765999	AP002989.1	-	lncRNA	75	opposite	8679_ID	chr11	103720634	103720708	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8683	ENST00000578539.1_1	ENST00000316615.9_3	chr17	73367027	73369817	AC011933.2	-	lncRNA	chr17	73314156	73401790	GRB2	-	protein_coding	2790	same	1309_ID	chr17	73367028	73369817	2790	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8688	ENST00000578588.1	ENST00000561101.3_2	chr15	90673648	90673945	RN7SL755P	+	misc_RNA	chr15	90645880	90681248	IDH2-DT	+	lncRNA	297	same	10410_ID	chr15	90673649	90673945	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
8693	ENST00000578627.1	ENST00000648191.1_1	chr10	25380384	25380483	AL139821.1	-	miRNA	chr10	25241278	25450165	AL512598.2	+	lncRNA	99	opposite	5052_ID	chr10	25380385	25380483	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
8696	ENST00000578633.1_3	ENST00000584919.1_1	chr18	68003164	68004546	LIVAR	-	lncRNA	chr18	68002674	68019695	LINC01909	+	lncRNA	1382	opposite	7824_ID	chr18	68003165	68004546	1382	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
8697	ENST00000578635.1	ENST00000668741.1_1	chr15	36219056	36219124	MIR4510	+	miRNA	chr15	36212092	36341738	LINC02853	+	lncRNA	68	same	8588_ID	chr15	36219057	36219124	68	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8746	ENST00000578935.1_1	ENST00000404796.3_2	chr9	21995480	21996012	AL449423.1	+	lncRNA	chr9	21802634	22029593	AL359922.1	+	nonsense_mediated_decay	532	same	5646_ID	chr9	21995481	21996012	532	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
8765	ENST00000579044.1	ENST00000570618.5_3	chr17	44397044	44397325	RN7SL656P	+	misc_RNA	chr17	44352149	44439130	ARL17B	-	protein_coding	281	opposite	10342_ID	chr17	44397045	44397325	281	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
8780	ENST00000579127.1	ENST00000422059.5_3	chr6	43980737	43980838	AL109615.1	+	miRNA	chr6	43963459	44042389	AL109615.3	-	lncRNA	101	opposite	4697_ID	chr6	43980738	43980838	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8783	ENST00000579138.1_3	ENST00000262138.4_2	chr17	65028524	65029406	AC005544.2	-	lncRNA	chr17	64960822	65029514	CACNG4	+	protein_coding	882	opposite	313_ID	chr17	65028525	65029406	882	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
8787	ENST00000579159.1_1	ENST00000674868.1_1	chr17	15164331	15169024	AC005703.2	+	lncRNA	chr17	15134035	15175609	PMP22	-	protein_coding	4693	opposite	339_ID	chr17	15164332	15169024	4693	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8800	ENST00000579239.1_1	ENST00000654263.1_3	chr17	21436234	21446049	AC233702.7	+	lncRNA	chr17	21334277	21476658	LINC02693	-	lncRNA	9815	opposite	4256_ID	chr17	21436235	21446049	9815	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8802	ENST00000579277.1	ENST00000475381.7_6	chr3	172389348	172389429	AC007919.1	-	miRNA	chr3	172348038	172428857	NCEH1	-	protein_coding	81	same	666_ID	chr3	172389349	172389429	81	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8812	ENST00000579342.1	ENST00000667296.1_1	chr8	91475554	91475604	AF070718.1	-	miRNA	chr8	91233724	91700091	LINC00534	+	lncRNA	50	opposite	4376_ID	chr8	91475555	91475604	50	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
8826	ENST00000579433.1	ENST00000672427.1_3	chr3	15738804	15738878	MIR3134	-	miRNA	chr3	15643265	15763818	BTD	+	protein_coding	74	opposite	8257_ID	chr3	15738805	15738878	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
8829	ENST00000579458.1_3	ENST00000579964.6_2	chr18	24267584	24283602	PCAT18	-	lncRNA	chr18	24235706	24514223	AQP4-AS1	+	lncRNA	16018	opposite	9505_ID	chr18	24267585	24283602	16018	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8830	ENST00000579465.1	ENST00000358296.11_6	chr19	21935812	21935885	AC092364.2	+	miRNA	chr19	21905572	21950381	ZNF100	-	protein_coding	73	opposite	3082_ID	chr19	21935813	21935885	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8853	ENST00000579554.1_3	ENST00000580380.1_5	chr17	73141355	73142641	AC022211.1	-	lncRNA	chr17	73132242	73164376	JPT1	-	protein_coding	1286	same	1840_ID	chr17	73141356	73142641	1286	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
8855	ENST00000579560.1	ENST00000427024.5_3	chr2	132248732	132248809	MIR4784	-	miRNA	chr2	132222472	132249908	MZT2A	-	nonsense_mediated_decay	77	same	8771_ID	chr2	132248733	132248809	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8869	ENST00000579659.1	ENST00000668682.1_1	chr10	35930099	35930180	MIR4683	-	miRNA	chr10	35930024	35936754	AL121749.2	+	lncRNA	81	opposite	8670_ID	chr10	35930100	35930180	81	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	4
8870	ENST00000579667.1	ENST00000381051.6_1	chr22	46486923	46487006	MIR3619	+	miRNA	chr22	46449748	46501903	MIRLET7BHG	+	lncRNA	83	same	8354_ID	chr22	46486924	46487006	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8895	ENST00000579806.1	ENST00000374231.8_5	chr6	33665904	33666011	MIR3934	+	miRNA	chr6	33663125	33679461	UQCC2	-	protein_coding	107	opposite	8431_ID	chr6	33665905	33666011	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
8907	ENST00000579867.1	ENST00000379638.9_4	chr5	112241334	112241434	AC008536.1	-	miRNA	chr5	112212081	112257924	REEP5	-	protein_coding	100	same	742_ID	chr5	112241335	112241434	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8930	ENST00000579970.1	ENST00000463469.5_3	chr2	101710030	101710285	RN7SL548P	+	misc_RNA	chr2	101706714	101869328	TBC1D8	-	processed_transcript	255	opposite	10263_ID	chr2	101710031	101710285	255	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
8951	ENST00000580126.1	ENST00000474851.1_3	chr3	116569123	116569214	MIR4447	-	miRNA	chr3	115738361	116858236	LSAMP	-	protein_coding	91	same	8547_ID	chr3	116569124	116569214	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8952	ENST00000580134.1_1	ENST00000582752.7_4	chr17	13812547	13814529	AC005304.2	+	lncRNA	chr17	13658890	13972800	COX10-AS1	-	lncRNA	1982	opposite	271_ID	chr17	13812548	13814529	1982	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8961	ENST00000580204.1	ENST00000415387.1_3	chr2	213790980	213791060	MIR4776-2	+	miRNA	chr2	213446080	213886269	AC093865.1	-	lncRNA	80	opposite	8764_ID	chr2	213790981	213791060	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8965	ENST00000580228.1	ENST00000374395.9_3	chr1	24855944	24856204	RN7SL857P	-	misc_RNA	chr1	24829325	24867530	RCAN3	+	protein_coding	260	opposite	10485_ID	chr1	24855945	24856204	260	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
8992	ENST00000580349.1	ENST00000653163.1_1	chr15	93399732	93400024	RN7SL599P	+	misc_RNA	chr15	93362769	93441973	CHASERR	+	lncRNA	292	same	10295_ID	chr15	93399733	93400024	292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8993	ENST00000580360.1_1	ENST00000581915.5_1	chr17	30655459	30656414	AC005899.3	+	lncRNA	chr17	30651449	30687719	AC005899.4	+	lncRNA	955	same	378_ID	chr17	30655460	30656414	955	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9018	ENST00000580524.1_1	ENST00000661994.1_1	chr18	1655177	1779956	AC019183.1	+	lncRNA	chr18	1509031	2049511	AP005262.1	+	lncRNA	124779	same	1695_ID	chr18	1655178	1779956	124779	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
9027	ENST00000580570.1	ENST00000217909.8_2	chrX	118568481	118568781	RN7SL118P	+	misc_RNA	chrX	118533298	118588441	SLC25A43	+	protein_coding	300	same	9953_ID	chrX	118568482	118568781	300	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
9054	ENST00000580659.1_3	ENST00000583687.1_1	chr18	65475741	65482059	LINC01903	-	lncRNA	chr18	65183782	65566856	AC114689.3	+	lncRNA	6318	opposite	7697_ID	chr18	65475742	65482059	6318	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9083	ENST00000580818.1	ENST00000667364.1_1	chr6	91022460	91022552	MIR4464	+	miRNA	chr6	91005225	91073384	AL132996.1	+	lncRNA	92	same	8556_ID	chr6	91022461	91022552	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9093	ENST00000580859.1	ENST00000674868.1_1	chr17	15154943	15155013	MIR4731	-	miRNA	chr17	15134035	15175609	PMP22	-	protein_coding	70	same	8720_ID	chr17	15154944	15155013	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
9099	ENST00000580895.1	ENST00000558583.3_3	chr16	13137328	13137433	AC092380.1	+	miRNA	chr16	12995454	13334273	SHISA9	+	protein_coding	105	same	3087_ID	chr16	13137329	13137433	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9104	ENST00000580915.1	ENST00000645030.2_3	chr2	112078588	112078668	MIR4435-2	-	miRNA	chr2	111763591	112252647	MIR4435-2HG	-	lncRNA	80	same	8536_ID	chr2	112078589	112078668	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
9110	ENST00000580941.1	ENST00000670992.1_3	chr18	37256684	37256743	MIR5583-1	+	miRNA	chr18	36786880	37380285	MIR924HG	-	lncRNA	59	opposite	8936_ID	chr18	37256685	37256743	59	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9128	ENST00000581025.1	ENST00000414287.5_3	chr22	49937040	49937114	MIR3667	-	miRNA	chr22	49808172	50051152	C22orf34	-	lncRNA	74	same	8377_ID	chr22	49937041	49937114	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9171	ENST00000581331.1	ENST00000435411.6_2	chr2	182170319	182170379	MIR4437	-	miRNA	chr2	181988563	182274048	LINC01934	+	lncRNA	60	opposite	8540_ID	chr2	182170320	182170379	60	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
9190	ENST00000581435.1	ENST00000434816.5_3	chr7	5315966	5316046	AC093376.1	+	miRNA	chr7	5313999	5331397	SLC29A4	+	protein_coding	80	same	3199_ID	chr7	5315967	5316046	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9201	ENST00000581522.1	ENST00000488319.5_1	chr13	36929927	36930015	AL139377.1	+	miRNA	chr13	36920567	36943738	SPART-AS1	+	lncRNA	88	same	5043_ID	chr13	36929928	36930015	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9203	ENST00000581533.1_3	ENST00000582752.7_4	chr17	13861064	13870269	AC005304.3	-	lncRNA	chr17	13658890	13972800	COX10-AS1	-	lncRNA	9205	same	272_ID	chr17	13861065	13870269	9205	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9232	ENST00000581736.1	ENST00000657641.1_3	chr9	91360750	91360820	MIR4289	-	miRNA	chr9	91349955	91418631	AL390791.1	-	lncRNA	70	same	8484_ID	chr9	91360751	91360820	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9247	ENST00000581814.1	ENST00000376131.8_4	chr13	102619991	102620096	MIR2681	-	miRNA	chr13	102363153	103054124	FGF14	-	protein_coding	105	same	8206_ID	chr13	102619992	102620096	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9249	ENST00000581818.1	ENST00000661394.1_1	chr11	59362549	59362631	MIR3162	-	miRNA	chr11	59333395	59406964	AP000442.1	+	lncRNA	82	opposite	8283_ID	chr11	59362550	59362631	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9253	ENST00000581830.1	ENST00000475249.5_1	chr2	182953155	182953343	AC064837.1	-	miRNA	chr2	182819222	182994893	PPP1R1C	+	processed_transcript	188	opposite	2362_ID	chr2	182953156	182953343	188	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
9254	ENST00000581837.1	ENST00000502271.5_3	chr5	53371347	53371413	MIR4459	-	miRNA	chr5	53179774	53606412	ARL15	-	protein_coding	66	same	8553_ID	chr5	53371348	53371413	66	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
9255	ENST00000581840.1	ENST00000567465.2_2	chr16	16731111	16731387	RN7SL90P	-	misc_RNA	chr16	16593389	16757992	AC136431.1	+	lncRNA	276	opposite	10498_ID	chr16	16731112	16731387	276	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9258	ENST00000581851.1_4	ENST00000580899.1_1	chr17	10698229	10707416	TMEM238L	-	protein_coding	chr17	10633112	10718481	TMEM220-AS1	+	lncRNA	9187	opposite	12726_ID	chr17	10698230	10707416	9187	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
9267	ENST00000581891.1	ENST00000369800.6_2	chr5	172089167	172089266	MIR5003	+	miRNA	chr5	172068265	172118543	NEURL1B	+	protein_coding	99	same	8806_ID	chr5	172089168	172089266	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9331	ENST00000582220.1	ENST00000642146.1_1	chr13	100105649	100105723	AL583784.1	-	miRNA	chr13	100098564	100153899	TM9SF2	+	protein_coding	74	opposite	5720_ID	chr13	100105650	100105723	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9376	ENST00000582434.1	ENST00000454741.5_2	chr22	28316512	28316600	MIR3199-2	-	miRNA	chr22	28315408	28398667	TTC28-AS1	+	lncRNA	88	opposite	8309_ID	chr22	28316513	28316600	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9395	ENST00000582606.1	ENST00000428151.1_1	chr1	38554902	38555001	MIR3659	+	miRNA	chr1	38513096	38584697	MIR3659HG	+	lncRNA	99	same	8367_ID	chr1	38554903	38555001	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9399	ENST00000582622.1	ENST00000453773.5_3	chr7	75544514	75544587	MIR4651	+	miRNA	chr7	75528517	75609711	POR	+	protein_coding	73	same	8638_ID	chr7	75544515	75544587	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9411	ENST00000582676.1	ENST00000371608.6_2	chr20	49477444	49477523	AL133228.1	+	miRNA	chr20	49411530	49499213	BCAS4	+	protein_coding	79	same	4824_ID	chr20	49477445	49477523	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
9426	ENST00000582762.1	ENST00000394607.7_3	chr4	111038891	111039203	RN7SL275P	+	misc_RNA	chr4	110967001	111119809	ELOVL6	-	protein_coding	312	opposite	10072_ID	chr4	111038892	111039203	312	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9472	ENST00000582990.1_1	ENST00000654263.1_3	chr17	21360745	21362301	AC068418.1	+	lncRNA	chr17	21334277	21476658	LINC02693	-	lncRNA	1556	opposite	2408_ID	chr17	21360746	21362301	1556	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9475	ENST00000583006.1	ENST00000593655.5_3	chr19	20413398	20413481	AC078899.8	+	miRNA	chr19	20236227	20432114	AC011447.3	-	lncRNA	83	opposite	2601_ID	chr19	20413399	20413481	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9490	ENST00000583102.1	ENST00000614949.4_3	chr22	18246945	18247025	MIR3198-1	-	miRNA	chr22	18216907	18257261	BID	-	protein_coding	80	same	8307_ID	chr22	18246946	18247025	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9508	ENST00000583191.1_1	ENST00000598361.4_3	chr7	30565346	30573229	AC005154.4	+	lncRNA	chr7	30536692	30590377	AC005154.5	-	protein_coding	7883	opposite	243_ID	chr7	30565347	30573229	7883	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9548	ENST00000583434.1	ENST00000650553.1_3	chr6	141004950	141005020	MIR4465	+	miRNA	chr6	140896924	141219518	AL035446.2	-	lncRNA	70	opposite	8557_ID	chr6	141004951	141005020	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9549	ENST00000583440.1	ENST00000268154.9_2	chr15	90549986	90550073	MIR3174	+	miRNA	chr15	90544555	90625423	ZNF710	+	protein_coding	87	same	8292_ID	chr15	90549987	90550073	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9566	ENST00000583526.1	ENST00000530763.5_3	chr11	40635651	40635765	AC090720.1	+	miRNA	chr11	40135842	41481323	LRRC4C	-	protein_coding	114	opposite	2932_ID	chr11	40635652	40635765	114	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9603	ENST00000583721.1	ENST00000503323.1_1	chr5	143059424	143059536	MIR5197	+	miRNA	chr5	142985192	143208337	AC008696.2	+	lncRNA	112	same	8859_ID	chr5	143059425	143059536	112	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
9614	ENST00000583774.5_5	ENST00000581915.5_1	chr17	30661509	30677042	C17orf75	-	protein_coding	chr17	30651449	30687719	AC005899.4	+	lncRNA	25459	opposite	6488_ID	chr17	30661510	30677042	15533	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9617	ENST00000583819.1	ENST00000650760.1_3	chr8	144815252	144815323	MIR4664	-	miRNA	chr8	144806102	144820404	FAM83H	-	protein_coding	71	same	8653_ID	chr8	144815253	144815323	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9620	ENST00000583827.1_1	ENST00000661994.1_1	chr18	1780329	1782065	AP005057.1	+	lncRNA	chr18	1509031	2049511	AP005262.1	+	lncRNA	1736	same	6280_ID	chr18	1780330	1782065	1736	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
9644	ENST00000583964.1	ENST00000615337.4_3	chr6	44221942	44222022	MIR4647	-	miRNA	chr6	44221838	44225627	SLC35B2	-	protein_coding	80	same	8633_ID	chr6	44221943	44222022	80	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
9660	ENST00000584064.1	ENST00000173527.6_2	chr5	128433380	128433459	MIR4633	+	miRNA	chr5	128430441	128449721	ISOC1	+	protein_coding	79	same	8619_ID	chr5	128433381	128433459	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9679	ENST00000584140.1	ENST00000312655.9_2	chr17	57443443	57443515	MIR4729	+	miRNA	chr17	57409015	57479090	YPEL2	+	protein_coding	72	same	8718_ID	chr17	57443444	57443515	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9716	ENST00000584339.1_3	ENST00000580380.1_5	chr17	73134510	73137445	AC022211.3	-	lncRNA	chr17	73132242	73164376	JPT1	-	protein_coding	2935	same	1841_ID	chr17	73134511	73137445	2935	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
9730	ENST00000584412.1	ENST00000642740.1_1	chr15	62206623	62206875	RN7SL613P	+	misc_RNA	chr15	62126880	62227937	AC009554.1	+	lncRNA	252	same	10306_ID	chr15	62206624	62206875	252	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
9738	ENST00000584469.1	ENST00000540651.5_1	chr1	228284963	228285042	MIR3620	+	miRNA	chr1	228270360	228286912	ARF1	+	protein_coding	79	same	8356_ID	chr1	228284964	228285042	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9753	ENST00000584547.1_1	ENST00000584546.5_3	chr18	24923215	24926074	AC021382.1	+	lncRNA	chr18	24916342	25175128	AC090403.1	-	lncRNA	2859	opposite	1787_ID	chr18	24923216	24926074	2859	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
9761	ENST00000584594.1_1	ENST00000654263.1_3	chr17	21422774	21424530	AC233702.5	+	lncRNA	chr17	21334277	21476658	LINC02693	-	lncRNA	1756	opposite	4255_ID	chr17	21422775	21424530	1756	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9774	ENST00000584697.1	ENST00000645093.1_3	chr21	39334967	39335068	AP001427.1	+	miRNA	chr21	38995860	39493439	KCNJ6	-	protein_coding	101	opposite	6129_ID	chr21	39334968	39335068	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9793	ENST00000584795.1	ENST00000261037.7_2	chr3	99410323	99410415	AC055723.1	-	miRNA	chr3	99357318	99518070	COL8A1	+	protein_coding	92	opposite	2331_ID	chr3	99410324	99410415	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9798	ENST00000584830.1	ENST00000552856.1_3	chr12	76118232	76118321	AC131012.1	-	miRNA	chr12	75956981	76377795	AC078923.1	-	lncRNA	89	same	4080_ID	chr12	76118233	76118321	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9847	ENST00000585081.1_1	ENST00000316615.9_3	chr17	73340485	73369743	AC011933.4	+	lncRNA	chr17	73314156	73401790	GRB2	-	protein_coding	29258	opposite	1311_ID	chr17	73340486	73369743	29258	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9863	ENST00000585186.1	ENST00000478138.1_3	chr1	63995287	63995569	RN7SL488P	-	misc_RNA	chr1	63955773	64059392	ITGB3BP	-	processed_transcript	282	same	10218_ID	chr1	63995288	63995569	282	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9879	ENST00000585250.1	ENST00000498272.1_1	chr1	54519751	54519827	MIR4781	+	miRNA	chr1	54519259	54578192	TCEANC2	+	processed_transcript	76	same	8768_ID	chr1	54519752	54519827	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
9899	ENST00000585411.1_1	ENST00000334928.11_4	chr19	38876161	38877399	AC005789.1	+	lncRNA	chr19	38874906	38878674	GGN	-	protein_coding	1238	opposite	357_ID	chr19	38876162	38877399	1238	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	3	4
9911	ENST00000585807.6_4	ENST00000585572.1_1	chr17	40704940	40707232	HSD17B1	+	protein_coding	chr17	40688527	40714080	AC067852.1	+	lncRNA	2293	same	7305_ID	chr17	40704941	40707232	2292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
9932	ENST00000586373.1_1	ENST00000435112.5_3	chr17	68047417	68064236	LINC01028	+	lncRNA	chr17	68013464	68125000	AC005208.1	-	lncRNA	16819	opposite	7591_ID	chr17	68047418	68064236	16819	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
9985	ENST00000587894.1_1	ENST00000382159.8_4	chr19	2641835	2643851	AC092068.3	-	lncRNA	chr19	2511216	2702692	GNG7	-	protein_coding	2016	same	3038_ID	chr19	2641836	2643851	2016	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
10003	ENST00000588469.1_1	ENST00000589765.1_3	chr19	12936524	12943797	AC020934.1	+	lncRNA	chr19	12884972	12983554	HOOK2	-	processed_transcript	47020	opposite	1765_ID	chr19	12936525	12943797	7273	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
10019	ENST00000589101.1	ENST00000560055.5_2	chr19	55911112	55911787	CTD-2105E13.13	-	lincRNA	chr19	55897303	55914618	RPL28	+	protein_coding	675	opposite	6734_ID	chr19	55911113	55911787	675	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10023	ENST00000589272.5_4	ENST00000589765.1_3	chr19	12936292	12946242	RTBDN	-	protein_coding	chr19	12884972	12983554	HOOK2	-	processed_transcript	9951	same	11974_ID	chr19	12936293	12946242	9950	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
10026	ENST00000589512.1_3	ENST00000592263.1_3	chr19	14378618	14380189	AC011509.1	-	lncRNA	chr19	14365000	14404017	AC011509.2	-	lncRNA	1571	same	1259_ID	chr19	14378619	14380189	1571	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10031	ENST00000589671.1_1	ENST00000589143.5_3	chr19	56898780	56899793	AC006116.4	+	lncRNA	chr19	56887214	56904847	ZNF582	-	protein_coding	1013	opposite	421_ID	chr19	56898781	56899793	1013	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10043	ENST00000590117.1_1	ENST00000592484.5_3	chr19	33668961	33669557	AC008738.1	+	lncRNA	chr19	33668508	33696197	LRP3	+	protein_coding	596	same	791_ID	chr19	33668962	33669557	596	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10058	ENST00000590441.1_1	ENST00000592091.5_6	chr19	5899920	5901522	AC024592.1	+	lncRNA	chr19	5866181	5903798	AC024592.3	-	nonsense_mediated_decay	1617	opposite	2023_ID	chr19	5899921	5901522	1602	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10060	ENST00000590491.1_1	ENST00000382159.8_4	chr19	2610152	2611860	AC092068.2	-	lncRNA	chr19	2511216	2702692	GNG7	-	protein_coding	1708	same	3037_ID	chr19	2610153	2611860	1708	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
10062	ENST00000590513.2_1	ENST00000585572.1_1	chr17	40704453	40706766	AC067852.2	-	lncRNA	chr17	40688527	40714080	AC067852.1	+	lncRNA	2313	opposite	2377_ID	chr17	40704454	40706766	2313	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10064	ENST00000590604.1_1	ENST00000586570.5_3	chr18	52546687	52548040	AC007673.1	+	lncRNA	chr18	52385090	52551586	RAB27B	+	protein_coding	1353	same	631_ID	chr18	52546688	52548040	1353	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10067	ENST00000590751.5_3	ENST00000592533.5_2	chr19	38045683	38085656	ZNF571	-	protein_coding	chr19	38042307	38104996	ZNF540	+	protein_coding	40010	opposite	13055_ID	chr19	38045684	38085656	39973	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10077	ENST00000591108.1_1	ENST00000262768.11_4	chr17	76899344	76901106	AC100788.1	+	lncRNA	chr17	76849058	76921469	TIMP2	-	protein_coding	1762	opposite	3414_ID	chr17	76899345	76901106	1762	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10080	ENST00000591211.1_1	ENST00000592345.5_3	chr18	14089933	14091018	AC006557.1	+	lncRNA	chr18	14057455	14132489	ZNF519	-	processed_transcript	28768	opposite	482_ID	chr18	14089934	14091018	1085	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10098	ENST00000591803.2_5	ENST00000490856.5_3	chr7	106210356	106239354	AC005050.1	-	lncRNA	chr7	106012696	106372895	AC004917.1	-	lncRNA	29033	same	229_ID	chr7	106210357	106239354	28998	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
10116	ENST00000592525.1_1	ENST00000382159.8_4	chr19	2631951	2632847	AC092068.1	+	lncRNA	chr19	2511216	2702692	GNG7	-	protein_coding	896	opposite	3036_ID	chr19	2631952	2632847	896	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
10118	ENST00000592581.5_2	ENST00000592844.5_3	chr19	44764032	44779462	ZNF233	+	protein_coding	chr19	44732881	44807585	ZNF235	-	nonsense_mediated_decay	15438	opposite	13032_ID	chr19	44764033	44779462	15430	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10128	ENST00000592908.1_3	ENST00000651507.1_3	chr17	33826708	33837289	AC015911.3	-	lncRNA	chr17	33801922	33864880	SLFN12L	-	lncRNA	10581	same	1502_ID	chr17	33826709	33837289	10581	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
10129	ENST00000592926.1_1	ENST00000592345.5_3	chr18	14104540	14105225	AC006557.3	+	lncRNA	chr18	14057455	14132489	ZNF519	-	processed_transcript	685	opposite	483_ID	chr18	14104541	14105225	685	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10144	ENST00000593258.1_1	ENST00000651636.1_1	chr19	56858449	56859552	AC006116.6	-	lncRNA	chr19	56826630	56876685	AC006116.7	+	lncRNA	1103	opposite	423_ID	chr19	56858450	56859552	1103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10166	ENST00000594230.1_1	ENST00000334589.9_1	chr19	24110589	24112089	AC011503.2	+	lncRNA	chr19	24097678	24127961	ZNF726	+	protein_coding	1500	same	1258_ID	chr19	24110590	24112089	1500	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10168	ENST00000594247.5_1	ENST00000598309.1_3	chr19	17378184	17392058	BABAM1	+	nonsense_mediated_decay	chr19	17374915	17393595	USHBP1	-	protein_coding	13874	opposite	6393_ID	chr19	17378185	17392058	13874	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
10205	ENST00000595706.1_3	ENST00000381035.8_1	chr19	8488238	8492711	AC136469.1	-	lncRNA	chr19	8478153	8503888	MARCHF2	+	protein_coding	4473	opposite	4154_ID	chr19	8488239	8492711	4473	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
10215	ENST00000596027.1_1	ENST00000264071.7_4	chr19	6494330	6495036	AC010503.1	+	lncRNA	chr19	6494329	6502320	TUBB4A	-	protein_coding	706	opposite	1086_ID	chr19	6494331	6495036	706	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
10216	ENST00000596029.2_4	ENST00000487264.5_1	chr19	59104500	59110670	AC016629.2	-	lncRNA	chr19	59086811	59111168	AC016629.3	+	lncRNA	6222	opposite	1545_ID	chr19	59104501	59110670	6170	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
10217	ENST00000596041.1_1	ENST00000598513.5_3	chr19	53743927	53745166	AC092070.3	+	lncRNA	chr19	53738633	53758111	ZNF677	-	protein_coding	1239	opposite	3040_ID	chr19	53743928	53745166	1239	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10222	ENST00000596133.1_1	ENST00000635322.1_1	chr1	151738961	151739476	AL589765.5	-	lncRNA	chr1	151735374	151743806	OAZ3	+	protein_coding	515	opposite	5740_ID	chr1	151738962	151739476	515	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10224	ENST00000596192.1_3	ENST00000252603.7_2	chr19	17629138	17631374	AC010618.2	-	lncRNA	chr19	17622457	17632097	PGLS	+	protein_coding	2236	opposite	1115_ID	chr19	17629139	17631374	2236	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10242	ENST00000596705.5_3	ENST00000600810.1_4	chr19	21627042	21646710	AC010615.2	-	lncRNA	chr19	21587960	21674068	AC010615.4	+	nonsense_mediated_decay	19668	opposite	1114_ID	chr19	21627043	21646710	19668	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
10291	ENST00000597886.1_1	ENST00000594362.1_3	chr19	52645878	52647409	AC011468.3	+	lncRNA	chr19	52633816	52674786	AC011468.2	-	lncRNA	1531	opposite	1231_ID	chr19	52645879	52647409	1531	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10292	ENST00000597953.1_1	ENST00000595248.1_6	chr3	142719748	142720309	AC026304.1	-	lncRNA	chr3	142683338	142720401	PAQR9-AS1	+	lncRNA	561	opposite	2121_ID	chr3	142719749	142720309	561	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
10301	ENST00000598116.1_1	ENST00000595094.1_3	chr19	20794364	20798195	AC010636.1	+	lncRNA	chr19	20736597	20844389	AC010636.2	-	lncRNA	3831	opposite	1120_ID	chr19	20794365	20798195	3831	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10307	ENST00000598332.2_5	ENST00000651593.1_2	chr10	131491985	131499446	AL157832.2	-	lncRNA	chr10	131265504	131569247	MGMT	+	protein_coding	8396	opposite	5079_ID	chr10	131491986	131499446	7461	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
10312	ENST00000598405.1	ENST00000475381.7_6	chr3	172361482	172361740	AC007919.2	+	protein_coding	chr3	172348038	172428857	NCEH1	-	protein_coding	258	opposite	667_ID	chr3	172361483	172361740	258	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10335	ENST00000599209.1_1	ENST00000595857.5_5	chr19	49567515	49568113	AC008687.3	+	lncRNA	chr19	49564824	49568311	NTF4	-	protein_coding	598	opposite	776_ID	chr19	49567516	49568113	598	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
10337	ENST00000599222.1_3	ENST00000391785.8_3	chr19	53079135	53088814	AC022150.1	-	lncRNA	chr19	53073539	53090427	ZNF701	+	protein_coding	9679	opposite	1830_ID	chr19	53079136	53088814	9679	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	4
10339	ENST00000599292.1_1	ENST00000264071.7_4	chr19	6494330	6494816	AC010503.2	+	lncRNA	chr19	6494329	6502320	TUBB4A	-	protein_coding	486	opposite	1087_ID	chr19	6494331	6494816	486	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
10357	ENST00000599914.5_3	ENST00000601364.5_2	chr19	50546452	50554319	AC010624.3	-	lncRNA	chr19	50529296	50556671	ZNF473	+	protein_coding	7867	opposite	1116_ID	chr19	50546453	50554319	7867	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10369	ENST00000600257.1_1	ENST00000396424.5_5	chr19	53665680	53666816	AC092070.1	+	lncRNA	chr19	53665676	53696611	ZNF665	-	protein_coding	1136	opposite	3039_ID	chr19	53665681	53666816	1136	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
10397	ENST00000601161.1_2	ENST00000448962.5_1	chr19	54728394	54728753	AC245052.7	+	lncRNA	chr19	54704725	54752862	RPS9	+	nonsense_mediated_decay	359	same	4305_ID	chr19	54728395	54728753	359	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10418	ENST00000601795.1_3	ENST00000424094.6_3	chr20	57408863	57411584	AL132655.1	-	lncRNA	chr20	57393973	57425958	GNAS-AS1	-	lncRNA	2721	same	4808_ID	chr20	57408864	57411584	2721	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10431	ENST00000602282.2_1	ENST00000568879.1_3	chr16	87351114	87351649	AC010531.6	+	lncRNA	chr16	87336481	87367879	AC010531.1	-	protein_coding	535	opposite	1096_ID	chr16	87351115	87351649	535	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10443	ENST00000602347.1_1	ENST00000238156.8_4	chr12	124445263	124445791	AC068790.7	-	lncRNA	chr12	124420172	124457378	CCDC92	-	protein_coding	528	same	2448_ID	chr12	124445264	124445791	528	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10447	ENST00000602406.1_1	ENST00000054666.11_2	chr1	7836442	7836835	Z98884.2	+	lncRNA	chr1	7831355	7841492	VAMP3	+	protein_coding	393	same	12979_ID	chr1	7836443	7836835	393	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
10461	ENST00000602474.1_1	ENST00000238156.8_4	chr12	124447101	124447364	AC068790.4	-	lncRNA	chr12	124420172	124457378	CCDC92	-	protein_coding	263	same	2445_ID	chr12	124447102	124447364	263	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10465	ENST00000602558.1_1	ENST00000238156.8_4	chr12	124456003	124456261	AC068790.6	-	lncRNA	chr12	124420172	124457378	CCDC92	-	protein_coding	258	same	2447_ID	chr12	124456004	124456261	258	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10472	ENST00000602601.1_1	ENST00000238156.8_4	chr12	124452569	124453126	AC068790.2	-	lncRNA	chr12	124420172	124457378	CCDC92	-	protein_coding	557	same	2443_ID	chr12	124452570	124453126	557	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10481	ENST00000602665.1_1	ENST00000568879.1_3	chr16	87360592	87361190	AC010531.7	+	lncRNA	chr16	87336481	87367879	AC010531.1	-	protein_coding	598	opposite	1097_ID	chr16	87360593	87361190	598	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10485	ENST00000602701.1_1	ENST00000563003.1_3	chr16	63100429	63100894	AC040174.2	-	lncRNA	chr16	63090689	63163558	AC040174.1	-	lncRNA	465	same	2291_ID	chr16	63100430	63100894	465	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10492	ENST00000602741.1_1	ENST00000238156.8_4	chr12	124454536	124454891	AC068790.5	-	lncRNA	chr12	124420172	124457378	CCDC92	-	protein_coding	355	same	2446_ID	chr12	124454537	124454891	355	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10519	ENST00000602890.1_1	ENST00000473595.1_1	chr3	161146899	161147401	AC112491.1	+	lncRNA	chr3	161144214	161166030	LINC02067	+	lncRNA	502	same	3824_ID	chr3	161146900	161147401	502	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
10524	ENST00000602943.1	ENST00000655937.1_3	chr1	53708035	53710212	RP5-1024G6.8	-	lincRNA	chr1	53704251	53712154	AL606760.1	+	lncRNA	2177	opposite	11945_ID	chr1	53708036	53710212	2177	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	4
10529	ENST00000602954.1_1	ENST00000324679.5_4	chr14	51129228	51129896	AL606834.1	-	lncRNA	chr14	51100297	51135024	SAV1	-	protein_coding	668	same	5842_ID	chr14	51129229	51129896	668	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
10538	ENST00000602988.1_1	ENST00000238156.8_4	chr12	124450623	124451176	AC068790.3	-	lncRNA	chr12	124420172	124457378	CCDC92	-	protein_coding	553	same	2444_ID	chr12	124450624	124451176	553	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10540	ENST00000603033.1_1	ENST00000646051.1_1	chr10	72689681	72691814	AC073176.1	+	lncRNA	chr10	72686811	72837567	AC073176.2	+	lncRNA	2133	same	2509_ID	chr10	72689682	72691814	2133	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10543	ENST00000603052.1_1	ENST00000645030.2_3	chr2	112024444	112025050	AC068491.2	-	lncRNA	chr2	111763591	112252647	MIR4435-2HG	-	lncRNA	606	same	2417_ID	chr2	112024445	112025050	606	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10545	ENST00000603064.1	ENST00000470108.5_3	chr21	40685886	40686886	BRWD1-IT2	-	sense_intronic	chr21	40670015	40693485	BRWD1	-	processed_transcript	1000	same	6433_ID	chr21	40685887	40686886	1000	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10547	ENST00000603197.6_4	ENST00000605548.1_1	chr17	34198494	34207499	CCL5	-	protein_coding	chr17	34195970	34212867	AC015849.1	+	lncRNA	9303	opposite	6583_ID	chr17	34198495	34207499	9005	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10567	ENST00000603748.1_1	ENST00000645030.2_3	chr2	111968571	111970053	AC108463.3	-	lncRNA	chr2	111763591	112252647	MIR4435-2HG	-	lncRNA	1482	same	3739_ID	chr2	111968572	111970053	1482	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10579	ENST00000604070.1_1	ENST00000430772.6_4	chrX	73429810	73433495	Z83843.1	-	lncRNA	chrX	73184043	73513368	FTX	-	lncRNA	3685	same	12947_ID	chrX	73429811	73433495	3685	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10590	ENST00000604271.2_1	ENST00000305249.10_4	chr2	75381491	75417075	AC007681.1	+	lncRNA	chr2	75273589	75426646	TACR1	-	protein_coding	35584	opposite	632_ID	chr2	75381492	75417075	35584	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10614	ENST00000604999.1_1	ENST00000647858.1_3	chr1	59754974	59755312	AC093424.1	-	lncRNA	chr1	59597631	59762163	HSD52	-	lncRNA	338	same	3204_ID	chr1	59754975	59755312	338	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10629	ENST00000605338.1_1	ENST00000659767.1_1	chr20	10981951	10982411	AL158042.1	+	lncRNA	chr20	10976940	11010103	LINC02871	+	lncRNA	460	same	5092_ID	chr20	10981952	10982411	460	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
10648	ENST00000605886.1_1	ENST00000441358.5_5	chr1	156611457	156614679	AL365181.3	-	lncRNA	chr1	156611181	156616936	BCAN	+	protein_coding	3222	opposite	5532_ID	chr1	156611458	156614679	3222	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
10654	ENST00000605923.1_1	ENST00000517832.1_3	chr8	99448896	99451518	AP003355.2	+	lncRNA	chr8	99413630	99539154	STK3	-	processed_transcript	2622	opposite	6249_ID	chr8	99448897	99451518	2622	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
10668	ENST00000606115.1_1	ENST00000523024.1_4	chr8	10344316	10347176	AC104964.3	+	lncRNA	chr8	10340387	10405095	PRSS51	-	retained_intron	2860	opposite	3575_ID	chr8	10344317	10347176	2860	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10684	ENST00000606207.1	ENST00000649591.1_6	chr14	101350819	101350913	MIR432	+	miRNA	chr14	101346089	101370059	RTL1	-	protein_coding	94	opposite	8512_ID	chr14	101350820	101350913	94	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
10693	ENST00000606285.1_1	ENST00000658207.1_1	chr6	708591	711405	AL357054.4	-	lncRNA	chr6	692529	796781	AL357054.2	+	lncRNA	2814	opposite	5410_ID	chr6	708592	711405	2814	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10700	ENST00000606384.1_1	ENST00000671459.1_3	chr10	81422947	81424542	AL132656.3	+	lncRNA	chr10	81421149	81565842	NUTM2B-AS1	-	lncRNA	1595	opposite	4809_ID	chr10	81422948	81424542	1595	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
10708	ENST00000606448.1_1	ENST00000376131.8_4	chr13	103046979	103048053	FGF14-AS2	+	lncRNA	chr13	102363153	103054124	FGF14	-	protein_coding	1074	opposite	7022_ID	chr13	103046980	103048053	1074	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10728	ENST00000606622.1_3	ENST00000658207.1_1	chr6	774746	780214	AL392183.1	-	lncRNA	chr6	692529	796781	AL357054.2	+	lncRNA	5468	opposite	5604_ID	chr6	774747	780214	5468	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10751	ENST00000606839.1_1	ENST00000486568.5_1	chr3	158500335	158500913	AC080013.2	+	lncRNA	chr3	158449986	158525210	MFSD1	+	protein_coding	578	same	2695_ID	chr3	158500336	158500913	578	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10759	ENST00000606921.1_1	ENST00000378119.9_4	chr6	24706974	24707379	AL031775.2	+	lncRNA	chr6	24705088	24719382	C6orf62	-	protein_coding	405	opposite	4562_ID	chr6	24706975	24707379	405	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10765	ENST00000607014.1_1	ENST00000537591.5_1	chr6	24701134	24702021	AL031775.1	-	lncRNA	chr6	24667262	24705293	ACOT13	+	protein_coding	887	opposite	4561_ID	chr6	24701135	24702021	887	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	4
10768	ENST00000607044.1_1	ENST00000486568.5_1	chr3	158519045	158519724	AC080013.4	-	lncRNA	chr3	158449986	158525210	MFSD1	+	protein_coding	679	opposite	2698_ID	chr3	158519046	158519724	679	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10772	ENST00000607084.1_1	ENST00000658207.1_1	chr6	761674	780648	AL357054.3	+	lncRNA	chr6	692529	796781	AL357054.2	+	lncRNA	18974	same	5409_ID	chr6	761675	780648	18974	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10783	ENST00000607251.5_3	ENST00000376131.8_4	chr13	102944676	103046869	FGF14-IT1	-	lncRNA	chr13	102363153	103054124	FGF14	-	protein_coding	102193	same	7023_ID	chr13	102944677	103046869	102193	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10784	ENST00000607258.2_1	ENST00000498508.6_1	chr1	214202233	214204244	AL606537.1	-	lncRNA	chr1	214161277	214214845	PROX1	+	protein_coding	2011	opposite	5839_ID	chr1	214202234	214204244	2011	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10819	ENST00000607476.1_1	ENST00000327892.13_2	chr6	30690881	30691654	AL662797.1	-	lncRNA	chr6	30688128	30693199	TUBB	+	protein_coding	773	opposite	5870_ID	chr6	30690882	30691654	773	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
10831	ENST00000607575.1	ENST00000447623.2_2	chr1	155164967	155165063	MIR92B	+	miRNA	chr1	155164794	155170137	THBS3-AS1	+	lncRNA	96	same	9107_ID	chr1	155164968	155165063	96	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	4
10890	ENST00000608113.1_1	ENST00000612688.1_3	chr2	55845043	55845508	AC015982.2	+	lncRNA	chr2	55841311	55846015	PPP4R3B	-	processed_transcript	465	opposite	1512_ID	chr2	55845044	55845508	465	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
10896	ENST00000608147.1_1	ENST00000617697.4_4	chr1	153938991	153939406	AL358472.3	+	lncRNA	chr1	153931574	153940660	SLC39A1	-	protein_coding	415	opposite	5458_ID	chr1	153938992	153939406	415	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
10898	ENST00000608159.1_1	ENST00000636153.1_3	chr1	200284562	200285095	AC097065.2	-	lncRNA	chr1	200222546	200343271	LINC00862	-	lncRNA	533	same	3303_ID	chr1	200284563	200285095	533	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10907	ENST00000608275.1_1	ENST00000248879.8_4	chr22	20305641	20306272	AC007663.4	-	lncRNA	chr22	20301760	20307583	DGCR6L	-	protein_coding	631	same	628_ID	chr22	20305642	20306272	631	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
10917	ENST00000608402.1_1	ENST00000608795.5_4	chr4	140477952	140478797	AC112236.2	+	lncRNA	chr4	140454384	140527853	SETD7	-	protein_coding	845	opposite	3818_ID	chr4	140477953	140478797	845	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10955	ENST00000608912.1_1	ENST00000649866.1_2	chr7	149578447	149578669	AC093458.1	-	lncRNA	chr7	149570689	149588293	ATP6V0E2	+	nonsense_mediated_decay	222	opposite	3206_ID	chr7	149578448	149578669	222	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
10993	ENST00000609363.1_3	ENST00000561504.1_1	chr10	88729993	88730583	AL136982.7	-	lncRNA	chr10	88728246	88743691	ADIRF	+	nonsense_mediated_decay	590	opposite	4926_ID	chr10	88729994	88730583	590	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	4
11005	ENST00000609470.6_2	ENST00000618770.1_3	chr20	1306048	1359378	SDCBP2-AS1	+	lncRNA	chr20	1298214	1373730	AL136531.2	-	processed_transcript	53331	opposite	12024_ID	chr20	1306049	1359378	53330	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11010	ENST00000609511.1_1	ENST00000592823.5_3	chr4	56254115	56254438	AC069200.1	+	lncRNA	chr4	56241041	56262009	SRD5A3-AS1	-	lncRNA	323	opposite	2472_ID	chr4	56254116	56254438	323	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11018	ENST00000609618.2_1	ENST00000569039.5_3	chr16	29823581	29831413	AC009133.6	+	nonsense_mediated_decay	chr16	29820249	29831687	AC009133.1	-	lncRNA	7832	opposite	899_ID	chr16	29823582	29831413	7832	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
11027	ENST00000609721.1_1	ENST00000343735.8_2	chr3	137723490	137723964	AC016252.1	-	lncRNA	chr3	137717576	137752497	CLDN18	+	protein_coding	474	opposite	1526_ID	chr3	137723491	137723964	474	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11037	ENST00000609775.1_1	ENST00000583700.5_5	chr18	20462787	20463320	AC090912.3	-	lncRNA	chr18	20378223	20516846	RBBP8	+	protein_coding	533	opposite	2949_ID	chr18	20462788	20463320	533	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11039	ENST00000609827.1_1	ENST00000490493.1_4	chr7	105211529	105214107	AC073073.2	+	lncRNA	chr7	105207548	105241322	EFCAB10	-	protein_coding	2578	opposite	2501_ID	chr7	105211530	105214107	2578	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11045	ENST00000609910.1_1	ENST00000422809.5_1	chr21	30731322	30731774	AP000240.1	+	lncRNA	chr21	30699449	31003071	BACH1	+	protein_coding	452	same	5965_ID	chr21	30731323	30731774	452	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11048	ENST00000609934.1_1	ENST00000389995.4_2	chr21	33039040	33039560	AP000254.2	-	lncRNA	chr21	33031978	33041244	SOD1	+	protein_coding	520	opposite	5967_ID	chr21	33039041	33039560	520	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
11071	ENST00000610091.1	ENST00000411746.1	chr1	142620644	142729967	RP11-417J8.6	-	lincRNA	chr1	142619122	142729975	RP11-417J8.3	+	lincRNA	109323	opposite	11909_ID	chr1	142620645	142729967	109323	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
11078	ENST00000610158.1_1	ENST00000648191.1_1	chr10	25242169	25242442	AL512598.1	+	lncRNA	chr10	25241278	25450165	AL512598.2	+	lncRNA	273	same	5687_ID	chr10	25242170	25242442	273	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11082	ENST00000610202.2_1	ENST00000463469.5_3	chr2	101768121	101771874	TBC1D8-AS1	+	lncRNA	chr2	101706714	101869328	TBC1D8	-	processed_transcript	3753	opposite	12636_ID	chr2	101768122	101771874	3753	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
11102	ENST00000610445.2_2	ENST00000412903.1_5	chr11	5914437	5923960	OR52E5	+	protein_coding	chr11	5699549	5959849	TRIM5	-	protein_coding	9523	opposite	9443_ID	chr11	5914438	5923960	9523	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11114	ENST00000610735.4_1	ENST00000645030.2_3	chr2	111878490	111926022	BCL2L11	+	protein_coding	chr2	111763591	112252647	MIR4435-2HG	-	lncRNA	49068	opposite	6406_ID	chr2	111878491	111926022	47532	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
11115	ENST00000610780.3_1	ENST00000557794.5_3	chr15	102062799	102064942	AC090164.3	-	lncRNA	chr15	101844950	102065405	PCSK6	-	processed_transcript	2143	same	2875_ID	chr15	102062800	102064942	2143	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11144	ENST00000611487.1_1	ENST00000557794.5_3	chr15	102035254	102035770	AC090164.2	-	lncRNA	chr15	101844950	102065405	PCSK6	-	processed_transcript	516	same	2874_ID	chr15	102035255	102035770	516	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11177	ENST00000612495.1_1	ENST00000382159.8_4	chr19	2700686	2701264	AC006538.3	-	lncRNA	chr19	2511216	2702692	GNG7	-	protein_coding	578	same	477_ID	chr19	2700687	2701264	578	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11198	ENST00000612986.1_1	ENST00000402655.6_1	chr16	78157139	78158229	AC079414.3	+	lncRNA	chr16	78133550	79246564	WWOX	+	protein_coding	1090	same	2662_ID	chr16	78157140	78158229	1090	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
11203	ENST00000612997.1_1	ENST00000644461.1_2	chr15	39143506	39145633	AC022929.2	-	lncRNA	chr15	38920260	39472700	LINC02694	+	lncRNA	2127	opposite	1920_ID	chr15	39143507	39145633	2127	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11229	ENST00000613646.1_1	ENST00000372733.3_4	chr20	43973754	43974463	AL021578.1	-	lncRNA	chr20	43953927	43977064	SDC4	-	protein_coding	709	same	4449_ID	chr20	43973755	43974463	709	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11252	ENST00000614119.1_1	ENST00000268154.9_2	chr15	90568186	90569235	AC087284.1	+	lncRNA	chr15	90544555	90625423	ZNF710	+	protein_coding	1049	same	2795_ID	chr15	90568187	90569235	1049	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11255	ENST00000614165.1_1	ENST00000581216.6_6	chr17	29226127	29226669	AC130324.3	+	lncRNA	chr17	29226003	29233256	TEFM	-	protein_coding	542	opposite	4058_ID	chr17	29226128	29226669	542	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	4	4
11257	ENST00000614264.1_1	ENST00000636098.1_3	chr13	51754313	51755103	AL157817.1	+	lncRNA	chr13	51657344	51774388	C13orf42	-	processed_transcript	790	opposite	5074_ID	chr13	51754314	51755103	790	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11267	ENST00000614612.1_1	ENST00000646441.1_3	chr13	107158393	107159061	AL138689.1	-	lncRNA	chr13	107142092	107188010	EFNB2	-	protein_coding	668	same	4964_ID	chr13	107158394	107159061	668	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11311	ENST00000615718.1_4	ENST00000422809.5_1	chr21	30742379	30748659	BACH1-AS1	-	lncRNA	chr21	30699449	31003071	BACH1	+	protein_coding	6320	opposite	6397_ID	chr21	30742380	30748659	6280	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11313	ENST00000615734.1_3	ENST00000580191.5_5	chr18	24145686	24155590	AC090206.1	-	lncRNA	chr18	24035723	24237365	KCTD1	-	protein_coding	21076	same	2881_ID	chr18	24145687	24155590	9904	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11321	ENST00000615897.1_1	ENST00000403681.7_5	chr12	66224529	66224830	AC107308.1	+	lncRNA	chr12	66218262	66360071	HMGA2	+	protein_coding	301	same	3691_ID	chr12	66224530	66224830	301	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11325	ENST00000615962.1_1	ENST00000216968.5_3	chr20	33762157	33762722	AL356652.1	-	lncRNA	chr20	33759874	33765165	PROCR	+	protein_coding	565	opposite	5391_ID	chr20	33762158	33762722	565	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
11337	ENST00000616184.1_1	ENST00000590411.5_3	chr19	44480966	44481600	AC006213.4	+	lncRNA	chr19	44472013	44500281	ZNF155	+	protein_coding	634	same	438_ID	chr19	44480967	44481600	634	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11346	ENST00000616428.1_1	ENST00000317008.4_3	chr18	77437286	77439358	AC068473.5	-	lncRNA	chr18	77398927	77439745	AC068473.1	-	lncRNA	2072	same	2414_ID	chr18	77437287	77439358	2072	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11357	ENST00000616755.1_1	ENST00000576370.5_4	chr17	53041834	53042040	AC007485.1	+	lncRNA	chr17	53029262	53046014	COX11	-	nonsense_mediated_decay	206	opposite	579_ID	chr17	53041835	53042040	206	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11376	ENST00000617117.1_1	ENST00000650869.1_1	chr12	127631693	127634626	AC079949.2	+	lncRNA	chr12	127614549	127692251	AC079949.3	+	lncRNA	2933	same	2689_ID	chr12	127631694	127634626	2933	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11407	ENST00000617932.1_1	ENST00000561148.5_3	chr15	45670897	45672321	AC025580.3	+	lncRNA	chr15	45661526	45694416	GATM	-	protein_coding	1424	opposite	2101_ID	chr15	45670898	45672321	1424	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
11418	ENST00000618311.4_3	ENST00000464967.5_4	chrX	153146126	153154444	LCA10	+	lncRNA	chrX	153137675	153174677	U52112.1	-	retained_intron	8318	opposite	7514_ID	chrX	153146127	153154444	8318	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11421	ENST00000618425.4_3	ENST00000575785.2_3	chr16	3432080	3451065	ZSCAN32	-	protein_coding	chr16	3415111	3529550	AC025283.2	+	nonsense_mediated_decay	18985	opposite	13087_ID	chr16	3432081	3451065	18985	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11422	ENST00000618623.1_1	ENST00000539503.5_4	chr12	48546599	48546911	AC074029.3	+	lncRNA	chr12	48543633	48574996	ASB8	-	protein_coding	312	opposite	2565_ID	chr12	48546600	48546911	312	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
11441	ENST00000619006.1_1	ENST00000382758.6_4	chr13	21343014	21343514	AL512652.1	-	lncRNA	chr13	21302869	21348100	EEF1AKMT1	-	protein_coding	500	same	5694_ID	chr13	21343015	21343514	500	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11471	ENST00000619647.1_1	ENST00000651340.1_1	chr20	34652164	34652485	AL035420.3	-	lncRNA	chr20	34639412	34673625	AL035420.1	+	lncRNA	321	opposite	4602_ID	chr20	34652165	34652485	321	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
11476	ENST00000619673.1_1	ENST00000590411.5_3	chr19	44482527	44482815	AC006213.5	+	lncRNA	chr19	44472013	44500281	ZNF155	+	protein_coding	288	same	439_ID	chr19	44482528	44482815	288	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11504	ENST00000620171.1_1	ENST00000557804.1_1	chr15	91565995	91566430	AC068831.5	+	lncRNA	chr15	91565850	91579841	VPS33B-DT	+	lncRNA	435	same	2452_ID	chr15	91565996	91566430	435	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11513	ENST00000620414.1_1	ENST00000580191.5_5	chr18	24122934	24125755	AC007996.1	-	lncRNA	chr18	24035723	24237365	KCTD1	-	protein_coding	2821	same	678_ID	chr18	24122935	24125755	2821	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11522	ENST00000620519.1_1	ENST00000538186.5_1	chr12	27190032	27191893	AC092747.4	+	lncRNA	chr12	27175509	27219173	MED21	+	processed_transcript	1861	same	3141_ID	chr12	27190033	27191893	1861	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11533	ENST00000620814.1_1	ENST00000668995.1_1	chr16	72839896	72843771	AC004943.1	+	lncRNA	chr16	72699021	72856680	AC004943.2	+	lncRNA	22180	same	200_ID	chr16	72839897	72843771	3875	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
11562	ENST00000621437.4_1	ENST00000667608.1_3	chr5	147582356	147594699	SPINK6	+	protein_coding	chr5	147467792	147763432	AC011346.1	-	lncRNA	12344	opposite	12532_ID	chr5	147582357	147594699	12343	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
11574	ENST00000621669.1_1	ENST00000389727.8_4	chr12	124570307	124573144	AC068790.9	+	lncRNA	chr12	124457787	124800568	RFLNA	+	protein_coding	2837	same	2449_ID	chr12	124570308	124573144	2837	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11597	ENST00000621980.1_1	ENST00000618330.3_5	chr15	85165245	85166468	AC048382.6	-	lncRNA	chr15	85141039	85177219	AC048382.5	-	lncRNA	1223	same	2316_ID	chr15	85165246	85166468	1223	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11615	ENST00000622374.1_3	ENST00000602315.2_3	chr5	148805333	148807852	AC131025.2	-	lncRNA	chr5	148786442	148812398	CARMN	+	lncRNA	2519	opposite	4081_ID	chr5	148805334	148807852	2519	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
11622	ENST00000622554.1_1	ENST00000521601.1_3	chr8	105352023	105368916	DCSTAMP	+	protein_coding	chr8	105342551	105431140	DPYS	-	processed_transcript	17603	opposite	6774_ID	chr8	105352024	105368916	16893	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11626	ENST00000622621.1_1	ENST00000402655.6_1	chr16	79236520	79240636	AC092376.2	-	lncRNA	chr16	78133550	79246564	WWOX	+	protein_coding	4116	opposite	3083_ID	chr16	79236521	79240636	4116	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
11640	ENST00000623197.1_1	ENST00000414287.5_3	chr22	49927710	49928575	AL031593.1	+	lncRNA	chr22	49808172	50051152	C22orf34	-	lncRNA	865	opposite	4524_ID	chr22	49927711	49928575	865	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11662	ENST00000623764.1_1	ENST00000649472.1_1	chr8	9015572	9016131	AC022784.6	+	lncRNA	chr8	9009204	9060360	AC022784.1	+	lncRNA	559	same	1907_ID	chr8	9015573	9016131	559	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
11665	ENST00000623885.1_1	ENST00000660197.1_1	chr4	155182886	155183345	AC079298.2	+	lncRNA	chr4	154869869	155221652	AC079298.3	+	lncRNA	459	same	2637_ID	chr4	155182887	155183345	459	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
11668	ENST00000623943.1_3	ENST00000524142.5_4	chr5	151149802	151151069	AC091982.3	-	lncRNA	chr5	151122382	151152093	ATOX1	-	protein_coding	1267	same	3027_ID	chr5	151149803	151151069	1267	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11681	ENST00000624116.1_1	ENST00000668995.1_1	chr16	72806571	72807171	AC004943.3	+	lncRNA	chr16	72699021	72856680	AC004943.2	+	lncRNA	600	same	201_ID	chr16	72806572	72807171	600	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
11695	ENST00000624456.1_1	ENST00000454752.3_3	chr13	101189618	101191821	AL136526.1	+	lncRNA	chr13	101187994	101232366	AL356966.1	-	lncRNA	2203	opposite	4918_ID	chr13	101189619	101191821	2203	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
11706	ENST00000624853.1_1	ENST00000558967.1_1	chr15	41309187	41311041	AC020661.4	-	lncRNA	chr15	41309004	41316740	INO80-AS1	+	lncRNA	1854	opposite	1726_ID	chr15	41309188	41311041	1854	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
11721	ENST00000625038.1_1	ENST00000414287.5_3	chr22	49894216	49895234	AL008636.1	+	lncRNA	chr22	49808172	50051152	C22orf34	-	lncRNA	1018	opposite	4429_ID	chr22	49894217	49895234	1018	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11722	ENST00000625073.1_1	ENST00000651649.1_4	chr7	156333184	156333797	LINC00244	+	lncRNA	chr7	156181615	156433293	LINC01006	-	lncRNA	613	opposite	7534_ID	chr7	156333185	156333797	613	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11729	ENST00000625278.2_4	ENST00000432230.6_3	chr21	16196647	16290873	LINC02246	-	lncRNA	chr21	16191163	16386751	AF127577.4	-	lncRNA	98854	same	7753_ID	chr21	16196648	16290873	94226	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
11745	ENST00000626627.1_3	ENST00000428786.1_3	chr22	42534068	42535737	AC254562.3	+	lncRNA	chr22	42532441	42535938	AC254562.2	-	lncRNA	1669	opposite	4319_ID	chr22	42534069	42535737	1669	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
11766	ENST00000628516.1_1	ENST00000564627.2_6	chr1	204337558	204338847	LINC00628	-	lncRNA	chr1	204242753	204346793	PLEKHA6	-	protein_coding	1289	same	7568_ID	chr1	204337559	204338847	1289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11783	ENST00000629828.1_1	ENST00000616212.4_3	chr3	50374941	50375731	RASSF1-AS1	+	lncRNA	chr3	50367216	50378367	RASSF1	-	protein_coding	790	opposite	9708_ID	chr3	50374942	50375731	790	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11791	ENST00000630421.2_3	ENST00000642146.1_1	chr13	100139215	100149026	LINC01232	-	lncRNA	chr13	100098564	100153899	TM9SF2	+	protein_coding	12345	opposite	7623_ID	chr13	100139216	100149026	9811	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
11811	ENST00000633140.1_2	ENST00000617697.4_4	chr1	153936836	153937546	AL358472.4	+	lncRNA	chr1	153931574	153940660	SLC39A1	-	protein_coding	710	opposite	5460_ID	chr1	153936837	153937546	710	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11821	ENST00000634116.1_4	ENST00000310624.7_2	chr22	29876208	29877102	AC000035.1	-	lncRNA	chr22	29876206	29887379	NEFH	+	protein_coding	894	opposite	16_ID	chr22	29876209	29877102	894	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	4
11840	ENST00000635444.1_1	ENST00000551337.5_7	chr12	103347066	103347613	AC026108.1	-	lncRNA	chr12	103271272	103352144	PAH	-	protein_coding	547	same	2115_ID	chr12	103347067	103347613	547	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11850	ENST00000635791.1_1	ENST00000670992.1_3	chr18	36894203	36907972	AC011139.1	+	lncRNA	chr18	36786880	37380285	MIR924HG	-	lncRNA	13769	opposite	1178_ID	chr18	36894204	36907972	13769	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
11855	ENST00000636215.2_3	ENST00000462901.5_3	chr3	88108404	88193810	ZNF654	+	protein_coding	chr3	88104575	88199035	CGGBP1	-	protein_coding	85406	opposite	13061_ID	chr3	88108405	88193810	85406	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
11864	ENST00000636554.1_3	ENST00000568235.5_3	chr16	20714137	20753137	THUMPD1	-	nonsense_mediated_decay	chr16	20621564	20787242	ACSM3	+	protein_coding	39269	opposite	12689_ID	chr16	20714138	20753137	39000	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11869	ENST00000636802.1_3	ENST00000521923.5_1	chr8	105711706	105715783	AC012564.1	-	lncRNA	chr8	105602960	105907945	ZFPM2	+	processed_transcript	55697	opposite	1410_ID	chr8	105711707	105715783	4077	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11870	ENST00000636824.1_3	ENST00000637155.1_3	chr1	161403233	161410786	AL831711.1	-	lncRNA	chr1	161373198	161440313	AL592295.3	-	lncRNA	7553	same	5913_ID	chr1	161403234	161410786	7553	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
11895	ENST00000638059.1_1	ENST00000667608.1_3	chr5	147601212	147623097	MARCOL	+	protein_coding	chr5	147467792	147763432	AC011346.1	-	lncRNA	21931	opposite	7921_ID	chr5	147601213	147623097	21885	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
11907	ENST00000640236.1_3	ENST00000431759.5_1	chr1	43424735	43427462	AC099795.1	-	lncRNA	chr1	43424719	43449029	SLC2A1-AS1	+	lncRNA	2800	opposite	3395_ID	chr1	43424736	43427462	2727	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
11925	ENST00000641181.1_4	ENST00000412903.1_5	chr11	5797394	5804585	OR52N5	-	protein_coding	chr11	5699549	5959849	TRIM5	-	protein_coding	7191	same	9450_ID	chr11	5797395	5804585	7191	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11927	ENST00000641200.1_2	ENST00000557414.1_1	chr14	20241662	20251855	OR4M1	+	protein_coding	chr14	20187173	20295672	OR4N2	+	protein_coding	10193	same	9391_ID	chr14	20241663	20251855	10193	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
11929	ENST00000641256.1_4	ENST00000662798.1_3	chr1	247918147	247923858	OR1C1	-	protein_coding	chr1	247803065	247924557	AL390860.1	+	lncRNA	5711	opposite	9362_ID	chr1	247918148	247923858	5711	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
11930	ENST00000641350.1_2	ENST00000412903.1_5	chr11	5775472	5777135	OR52N4	+	protein_coding	chr11	5699549	5959849	TRIM5	-	protein_coding	1663	opposite	9449_ID	chr11	5775473	5777135	1663	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11931	ENST00000641377.1_2	ENST00000412903.1_5	chr11	5782382	5788695	OR56B2P	+	protein_coding	chr11	5699549	5959849	TRIM5	-	protein_coding	6313	opposite	9455_ID	chr11	5782383	5788695	6313	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11949	ENST00000641645.1_4	ENST00000412903.1_5	chr11	5807700	5812495	OR52N1	-	protein_coding	chr11	5699549	5959849	TRIM5	-	protein_coding	4795	same	9447_ID	chr11	5807701	5812495	4795	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11950	ENST00000641726.1_2	ENST00000412903.1_5	chr11	5901858	5908309	OR52E4	+	protein_coding	chr11	5699549	5959849	TRIM5	-	protein_coding	6451	opposite	9442_ID	chr11	5901859	5908309	6451	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11972	ENST00000642115.2_2	ENST00000642022.1_1	chr5	25188167	25188887	AC099499.2	-	lncRNA	chr5	25187908	25193652	LINC02211	+	lncRNA	720	opposite	3364_ID	chr5	25188168	25188887	720	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
11973	ENST00000642117.2_3	ENST00000557414.1_1	chr14	20211729	20217628	OR4Q3	+	protein_coding	chr14	20187173	20295672	OR4N2	+	protein_coding	5899	same	9397_ID	chr14	20211730	20217628	5899	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
11985	ENST00000642841.1_3	ENST00000623876.2_4	chr12	57911494	57914263	AC022506.1	-	protein_coding	chr12	57910370	57915520	DDIT3	-	protein_coding	2769	same	1873_ID	chr12	57911495	57914263	2769	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	2	4
12039	ENST00000648094.1_2	ENST00000329314.6_5	chr4	165878099	165880274	FAM218A	+	lncRNA	chr4	165875597	165898809	TRIM61	-	protein_coding	2175	opposite	6971_ID	chr4	165878100	165880274	2175	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
12050	ENST00000648233.2_2	ENST00000405805.5_3	chr13	31040253	31056449	AL353648.1	+	lncRNA	chr13	31032883	31191734	HMGB1	-	protein_coding	16196	opposite	5248_ID	chr13	31040254	31056449	16196	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12053	ENST00000648257.1_3	ENST00000657614.1_3	chr6	164126968	164135338	AL137005.1	-	lncRNA	chr6	164092640	164195662	AL078602.1	+	lncRNA	8370	opposite	4934_ID	chr6	164126969	164135338	8370	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
12079	ENST00000648581.1_1	ENST00000536540.5_3	chr11	94371210	94386050	LINC02700	+	lncRNA	chr11	94278495	94473435	AP000943.2	-	lncRNA	14840	opposite	7793_ID	chr11	94371211	94386050	14840	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
12081	ENST00000648601.1_1	ENST00000562840.1_3	chr16	87163462	87166713	AC136285.3	+	lncRNA	chr16	87117167	87336368	C16orf95	-	processed_transcript	3251	opposite	4149_ID	chr16	87163463	87166713	3251	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
12089	ENST00000648679.1_1	ENST00000642310.1_3	chr6	4449625	4468415	AL162718.2	+	lncRNA	chr6	4305175	4584105	AL162718.1	-	lncRNA	18790	opposite	5216_ID	chr6	4449626	4468415	18790	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
12112	ENST00000649049.1_3	ENST00000663078.1_3	chr1	182096431	182097817	AL390856.1	-	lncRNA	chr1	182065472	182279343	LINC01344	-	lncRNA	1386	same	5563_ID	chr1	182096432	182097817	1386	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
12121	ENST00000649169.1_1	ENST00000433656.2_4	chr9	98534870	98538564	AL354861.3	+	lncRNA	chr9	98521512	98637762	LINC00476	-	lncRNA	3960	opposite	5292_ID	chr9	98534871	98538564	3694	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
12128	ENST00000649319.1_1	ENST00000647863.1_3	chr7	153092568	153094006	AC073236.1	+	lncRNA	chr7	153052449	153111066	LINC01287	-	lncRNA	1438	opposite	2514_ID	chr7	153092569	153094006	1438	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
12147	ENST00000649675.1_1	ENST00000659002.1_3	chr15	95831162	95834872	AC104260.3	+	lncRNA	chr15	95729862	95870269	LINC01197	-	lncRNA	3710	opposite	3524_ID	chr15	95831163	95834872	3710	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
12152	ENST00000649926.1_3	ENST00000402655.6_1	chr16	79242389	79245161	AC092376.3	-	lncRNA	chr16	78133550	79246564	WWOX	+	protein_coding	2772	opposite	3084_ID	chr16	79242390	79245161	2772	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
12193	ENST00000650758.1_2	ENST00000626258.2_5	chr4	118569986	118578467	AC092661.1	-	lncRNA	chr4	118327321	118610182	LINC01378	+	lncRNA	8481	opposite	3116_ID	chr4	118569987	118578467	8481	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
12210	ENST00000651075.1_1	ENST00000552856.1_3	chr12	76042974	76085717	AC078820.2	+	lncRNA	chr12	75956981	76377795	AC078923.1	-	lncRNA	42743	opposite	2591_ID	chr12	76042975	76085717	42743	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
12215	ENST00000651165.1_1	ENST00000589143.5_3	chr19	56891598	56895293	AC006116.9	+	lncRNA	chr19	56887214	56904847	ZNF582	-	protein_coding	3695	opposite	427_ID	chr19	56891599	56895293	3695	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
12252	ENST00000652083.2_4	ENST00000655951.1_1	chr4	32006697	32024105	AC097654.1	-	lncRNA	chr4	31999006	32230165	LINC02506	+	lncRNA	17408	opposite	3333_ID	chr4	32006698	32024105	17408	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12258	ENST00000652202.1_3	ENST00000647244.1_2	chr6	116588922	116601050	TSPYL1	-	nonsense_mediated_decay	chr6	116575339	116756928	DSE	+	protein_coding	12171	opposite	12802_ID	chr6	116588923	116601050	12128	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
12292	ENST00000652725.1_1	ENST00000490856.5_3	chr7	106264517	106269142	AC005050.2	+	lncRNA	chr7	106012696	106372895	AC004917.1	-	lncRNA	4625	opposite	230_ID	chr7	106264518	106269142	4625	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12298	ENST00000652829.1_1	ENST00000590800.6_4	chr18	45688409	45711096	AC105101.2	+	lncRNA	chr18	45553042	45935754	ZBTB7C	-	protein_coding	22687	opposite	3594_ID	chr18	45688410	45711096	22687	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
12315	ENST00000653205.1_3	ENST00000549175.1_4	chr12	81488149	81519642	AC078955.1	-	lncRNA	chr12	81331593	81528742	ACSS3	+	protein_coding	31493	opposite	2610_ID	chr12	81488150	81519642	31493	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
12319	ENST00000653387.1_1	ENST00000608795.5_4	chr4	140489726	140501297	AC112236.3	+	lncRNA	chr4	140454384	140527853	SETD7	-	protein_coding	11571	opposite	3819_ID	chr4	140489727	140501297	11571	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
12328	ENST00000653617.1_3	ENST00000642310.1_3	chr6	4381444	4383831	AL162718.3	+	lncRNA	chr6	4305175	4584105	AL162718.1	-	lncRNA	2387	opposite	5217_ID	chr6	4381445	4383831	2387	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
12379	ENST00000655079.1_1	ENST00000441338.1_3	chr1	244250607	244253597	AL590483.4	+	lncRNA	chr1	244232121	244256328	AL590483.1	-	lncRNA	2990	opposite	5772_ID	chr1	244250608	244253597	2990	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
12381	ENST00000655120.1_1	ENST00000602719.5_4	chr16	85733425	85744792	AC018695.9	+	lncRNA	chr16	85723775	85784735	C16orf74	-	protein_coding	11367	opposite	1652_ID	chr16	85733426	85744792	11367	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
12393	ENST00000655308.1_1	ENST00000380888.5_4	chr20	29516512	29517630	AL121762.1	+	lncRNA	chr20	29513581	29523881	LINC01597	-	lncRNA	1118	opposite	4749_ID	chr20	29516513	29517630	1118	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
12396	ENST00000655365.1_3	ENST00000606445.1_1	chr5	17089404	17216906	BASP1-AS1	-	lncRNA	chr5	17065706	17275462	BASP1	+	protein_coding	127752	opposite	6402_ID	chr5	17089405	17216906	127502	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
12405	ENST00000655572.1_4	ENST00000579964.6_2	chr18	24402304	24405119	AC018371.1	-	lncRNA	chr18	24235706	24514223	AQP4-AS1	+	lncRNA	2831	opposite	1614_ID	chr18	24402305	24405119	2815	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12406	ENST00000655589.1_1	ENST00000556361.1_4	chr14	66715528	66745593	AL157997.1	+	lncRNA	chr14	66679527	66963043	AL359232.1	-	lncRNA	30065	opposite	5090_ID	chr14	66715529	66745593	30065	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
12412	ENST00000655684.1_1	ENST00000421122.7_5	chr2	162101240	162105560	LINC01806	+	lncRNA	chr2	162079295	162111186	AC009299.2	-	lncRNA	4321	opposite	7682_ID	chr2	162101241	162105560	4320	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
12418	ENST00000655872.1_3	ENST00000402655.6_1	chr16	78827480	78830259	AC009141.1	-	lncRNA	chr16	78133550	79246564	WWOX	+	protein_coding	2779	opposite	905_ID	chr16	78827481	78830259	2779	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
12432	ENST00000656016.1_1	ENST00000522037.5_1	chr8	22403072	22406350	AC037459.4	+	lncRNA	chr8	22402498	22414418	SORBS3	+	processed_transcript	3278	same	2284_ID	chr8	22403073	22406350	3278	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12436	ENST00000656101.1_1	ENST00000415387.1_3	chr2	213660023	213683985	LINC01878	+	lncRNA	chr2	213446080	213886269	AC093865.1	-	lncRNA	23965	opposite	7692_ID	chr2	213660024	213683985	23962	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
12467	ENST00000656874.1_3	ENST00000549802.5_3	chr12	92401827	92416365	AC123512.1	+	lncRNA	chr12	92378865	92536447	LINC01619	-	lncRNA	14544	opposite	3989_ID	chr12	92401828	92416365	14538	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12494	ENST00000657417.1_4	ENST00000436556.5_5	chr2	220063361	220064756	AC068946.3	-	lncRNA	chr2	220059958	220072143	ZFAND2B	+	protein_coding	1395	opposite	2459_ID	chr2	220063362	220064756	1395	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12504	ENST00000657583.1_1	ENST00000644461.1_2	chr15	39311393	39318722	AC087878.1	+	lncRNA	chr15	38920260	39472700	LINC02694	+	lncRNA	7329	same	2854_ID	chr15	39311394	39318722	7329	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
12531	ENST00000658047.1_3	ENST00000655697.1_1	chr2	150602161	150714901	LINC01931	-	lncRNA	chr2	150444186	150903961	MMADHC-DT	+	lncRNA	113544	opposite	7703_ID	chr2	150602162	150714901	112740	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
12537	ENST00000658216.1_1	ENST00000478136.6_2	chr3	68549763	68555024	AC104167.1	+	lncRNA	chr3	68053389	68594772	TAFA1	+	protein_coding	5261	same	3515_ID	chr3	68549764	68555024	5261	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
12548	ENST00000658405.1_1	ENST00000375256.5_4	chr9	99179005	99179659	AL133477.1	-	lncRNA	chr9	99148222	99180652	ZNF367	-	protein_coding	654	same	4861_ID	chr9	99179006	99179659	654	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12568	ENST00000658653.1_1	ENST00000558293.7_3	chr14	24476393	24496991	AL136419.3	+	lncRNA	chr14	24439139	24520586	AL136419.1	+	lncRNA	20598	same	4910_ID	chr14	24476394	24496991	20598	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12570	ENST00000658670.1_1	ENST00000653909.1_3	chr5	28614719	28654638	AC109472.1	+	lncRNA	chr5	28548241	28809383	AC008825.1	-	lncRNA	39919	opposite	3769_ID	chr5	28614720	28654638	39919	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
12578	ENST00000658869.1_3	ENST00000486975.1_2	chr3	170409785	170453850	AC026316.5	-	lncRNA	chr3	170136655	170578169	AC026316.4	+	protein_coding	44065	opposite	2127_ID	chr3	170409786	170453850	44065	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	4
12582	ENST00000658886.1_1	ENST00000670716.1_3	chr3	194018117	194019837	AC117469.1	+	lncRNA	chr3	194013979	194040630	LINC00887	-	lncRNA	1720	opposite	3931_ID	chr3	194018118	194019837	1720	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
12620	ENST00000659566.1_1	ENST00000584546.5_3	chr18	24955273	24981874	AC068408.1	+	lncRNA	chr18	24916342	25175128	AC090403.1	-	lncRNA	26601	opposite	2406_ID	chr18	24955274	24981874	26601	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
12642	ENST00000660115.1_1	ENST00000559363.3_4	chr15	98101037	98102327	AC026523.3	+	lncRNA	chr15	98096504	98103932	AC026523.1	-	lncRNA	1290	opposite	2161_ID	chr15	98101038	98102327	1290	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
12648	ENST00000660246.1_1	ENST00000567465.2_2	chr16	16706234	16727848	AC136431.2	+	lncRNA	chr16	16593389	16757992	AC136431.1	+	lncRNA	21614	same	4153_ID	chr16	16706235	16727848	21614	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12653	ENST00000660312.1_1	ENST00000375119.8_3	chr9	100683871	100684463	AL499604.1	-	lncRNA	chr9	100666770	100684782	TRMO	-	protein_coding	592	same	5674_ID	chr9	100683872	100684463	592	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12656	ENST00000660401.1_1	ENST00000520920.5_3	chr8	18949212	19002959	AC100849.2	+	lncRNA	chr8	18942501	19116979	AC100849.1	-	lncRNA	53747	opposite	3439_ID	chr8	18949213	19002959	53747	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
12666	ENST00000660771.1_3	ENST00000560360.2_4	chr15	98654957	98674883	AC022523.3	-	lncRNA	chr15	98581799	98836428	AC022523.1	-	lncRNA	19979	same	1882_ID	chr15	98654958	98674883	19926	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
12679	ENST00000660925.1_3	ENST00000675324.1_1	chr19	36797985	36812176	AC092296.2	+	lncRNA	chr19	36753161	36812226	LINC00665	-	lncRNA	16711	opposite	3073_ID	chr19	36797986	36812176	14191	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
12683	ENST00000661021.1_3	ENST00000532217.1_4	chr11	82314570	82354481	AP000793.1	-	lncRNA	chr11	81811234	82429124	MIR4300HG	-	lncRNA	39917	same	6030_ID	chr11	82314571	82354481	39911	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
12699	ENST00000661355.1_1	ENST00000509479.6_4	chr4	140684233	140691545	AC108053.1	+	lncRNA	chr4	140637906	141075338	MAML3	-	protein_coding	7312	opposite	3716_ID	chr4	140684234	140691545	7312	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
12726	ENST00000662004.1_3	ENST00000339468.8_4	chr22	22067049	22068302	AP000553.9	+	lncRNA	chr22	22051824	22090083	YPEL1	-	protein_coding	1253	opposite	6001_ID	chr22	22067050	22068302	1253	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12727	ENST00000662034.1_1	ENST00000295958.10_6	chr4	39616084	39620108	AC108471.3	+	lncRNA	chr4	39547955	39640485	SMIM14	-	protein_coding	4024	opposite	3740_ID	chr4	39616085	39620108	4024	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12728	ENST00000662058.1_3	ENST00000421143.6_3	chr20	10153169	10181472	AL354824.1	+	lncRNA	chr20	10006722	10349367	SNAP25-AS1	-	lncRNA	28303	opposite	5288_ID	chr20	10153170	10181472	28303	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
12739	ENST00000662380.1_3	ENST00000504032.1_1	chr4	39541014	39547693	AC021148.2	-	lncRNA	chr4	39529638	39596327	UGDH-AS1	+	lncRNA	6679	opposite	1781_ID	chr4	39541015	39547693	6679	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
12740	ENST00000662397.1_1	ENST00000658247.1_1	chr13	61491114	61520089	LINC01442	+	lncRNA	chr13	61193158	61750892	LINC00378	+	lncRNA	28975	same	7643_ID	chr13	61491115	61520089	28975	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
12759	ENST00000662764.1_1	ENST00000667725.1_1	chr2	173098957	173101951	AC104088.3	+	lncRNA	chr2	173002072	173193323	AC104088.1	+	lncRNA	2994	same	3508_ID	chr2	173098958	173101951	2994	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
12767	ENST00000662900.1_3	ENST00000651593.1_2	chr10	131420251	131424928	AL355531.1	-	lncRNA	chr10	131265504	131569247	MGMT	+	protein_coding	138796	opposite	5347_ID	chr10	131420252	131424928	4677	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
12779	ENST00000663164.1_1	ENST00000656346.1_3	chr6	6711123	6714203	AL031123.4	+	lncRNA	chr6	6692973	6739179	AL031123.1	-	lncRNA	3080	opposite	4506_ID	chr6	6711124	6714203	3080	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
12782	ENST00000663206.1_1	ENST00000450231.1_5	chr7	50132874	50133719	AC034148.1	+	lncRNA	chr7	50121369	50160925	ZPBP	-	protein_coding	845	opposite	2251_ID	chr7	50132875	50133719	845	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
12801	ENST00000663609.1_1	ENST00000502271.5_3	chr5	53193293	53195200	AC025175.2	+	lncRNA	chr5	53179774	53606412	ARL15	-	protein_coding	1907	opposite	2063_ID	chr5	53193294	53195200	1907	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
12809	ENST00000663764.1_3	ENST00000549802.5_3	chr12	92420222	92426168	AC025164.2	+	lncRNA	chr12	92378865	92536447	LINC01619	-	lncRNA	5946	opposite	2055_ID	chr12	92420223	92426168	5946	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12814	ENST00000663912.1_3	ENST00000548156.1_1	chr12	72647330	72670734	TRHDE-AS1	-	lncRNA	chr12	72481045	72866875	TRHDE	+	processed_transcript	26991	opposite	12775_ID	chr12	72647331	72670734	23404	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
12821	ENST00000664029.1_3	ENST00000670892.1_1	chr6	133382378	133424267	AL591115.1	-	lncRNA	chr6	133275413	133428150	LINC00326	+	lncRNA	41889	opposite	5790_ID	chr6	133382379	133424267	41889	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
12830	ENST00000664190.1_1	ENST00000652687.1_3	chr19	37742786	37756434	LINC01535	+	lncRNA	chr19	37726408	37795242	AC016590.1	-	lncRNA	13651	opposite	7648_ID	chr19	37742787	37756434	13648	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
12835	ENST00000664344.1_3	ENST00000402655.6_1	chr16	78268548	78275886	WWOX-AS1	-	lncRNA	chr16	78133550	79246564	WWOX	+	protein_coding	7338	opposite	12918_ID	chr16	78268549	78275886	7338	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
12841	ENST00000664548.1_1	ENST00000504861.2_3	chr8	93777878	93870525	AC117834.2	+	lncRNA	chr8	93725189	93889865	FLJ46284	-	lncRNA	92647	opposite	3941_ID	chr8	93777879	93870525	92647	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
12845	ENST00000664581.1_3	ENST00000650869.1_1	chr12	127626573	127630575	AC079949.1	-	lncRNA	chr12	127614549	127692251	AC079949.3	+	lncRNA	24099	opposite	2688_ID	chr12	127626574	127630575	4002	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12846	ENST00000664582.1_1	ENST00000646051.1_1	chr10	72698803	72715704	LINC02622	+	lncRNA	chr10	72686811	72837567	AC073176.2	+	lncRNA	16912	same	7788_ID	chr10	72698804	72715704	16901	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12848	ENST00000664628.1_1	ENST00000648060.1_3	chr13	77238278	77267186	AL161717.1	+	lncRNA	chr13	77126941	77420659	AL136441.1	-	lncRNA	28908	opposite	5162_ID	chr13	77238279	77267186	28908	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
12860	ENST00000664834.1_3	ENST00000415387.1_3	chr2	213797617	213802244	AC108066.2	-	lncRNA	chr2	213446080	213886269	AC093865.1	-	lncRNA	4627	same	3720_ID	chr2	213797618	213802244	4627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12868	ENST00000664982.1_1	ENST00000429078.6_3	chr2	160653798	160654554	AC009961.3	-	lncRNA	chr2	160625140	160654766	CD302	-	protein_coding	756	same	1012_ID	chr2	160653799	160654554	756	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12900	ENST00000665642.1_3	ENST00000424345.5_1	chr9	66457357	66458523	AL512625.3	-	lncRNA	chr9	66457288	66469310	LINC01410	+	lncRNA	1166	opposite	5689_ID	chr9	66457358	66458523	1166	*	-	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12902	ENST00000665661.1_1	ENST00000583654.1_5	chr4	99882233	99885941	AC019131.3	+	lncRNA	chr4	99850047	99916145	AC019131.1	+	lncRNA	3708	same	1691_ID	chr4	99882234	99885941	3708	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
12904	ENST00000665731.1_3	ENST00000482861.5_1	chr2	162433701	162482262	AC062022.2	-	lncRNA	chr2	162280842	162627545	SLC4A10	+	processed_transcript	48561	opposite	2347_ID	chr2	162433702	162482262	48561	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
12906	ENST00000665743.1_3	ENST00000523627.1_1	chr8	22555896	22561289	AC105046.2	-	lncRNA	chr8	22547662	22656129	AC055854.1	+	lncRNA	5393	opposite	3590_ID	chr8	22555897	22561289	5393	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12929	ENST00000666418.1_3	ENST00000488190.1_3	chr3	148640489	148673875	AC092979.2	+	lncRNA	chr3	148568719	148677899	AC092979.1	-	lncRNA	33386	opposite	3177_ID	chr3	148640490	148673875	33386	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12930	ENST00000666440.1_3	ENST00000338882.4_3	chr6	110663175	110675766	AL050350.1	+	lncRNA	chr6	110567130	110679475	METTL24	-	protein_coding	12591	opposite	4657_ID	chr6	110663176	110675766	12591	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12946	ENST00000666726.1_3	ENST00000579964.6_2	chr18	24265917	24269632	AC012588.1	+	lncRNA	chr18	24235706	24514223	AQP4-AS1	+	lncRNA	3715	same	1413_ID	chr18	24265918	24269632	3715	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12949	ENST00000666760.1_1	ENST00000522780.5_6	chr8	133715057	133734529	AF228727.1	+	lncRNA	chr8	133697252	133740232	TMEM71	-	protein_coding	19472	opposite	4402_ID	chr8	133715058	133734529	19472	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
12951	ENST00000666822.1_1	ENST00000420186.2_3	chr21	28733474	28768106	AP001604.1	+	lncRNA	chr21	28731203	28820898	AP001605.1	-	lncRNA	34667	opposite	6149_ID	chr21	28733475	28768106	34632	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	4	4
12957	ENST00000666895.1_3	ENST00000583687.1_1	chr18	65339460	65434288	AC022655.1	-	lncRNA	chr18	65183782	65566856	AC114689.3	+	lncRNA	94831	opposite	1896_ID	chr18	65339461	65434288	94828	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12959	ENST00000666915.1_3	ENST00000662058.1_3	chr20	10153348	10167388	AL354824.2	+	lncRNA	chr20	10153169	10181472	AL354824.1	+	lncRNA	14040	same	5289_ID	chr20	10153349	10167388	14040	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
12962	ENST00000667032.1_3	ENST00000620494.1_4	chr13	27810418	27824848	LINC00412	-	lncRNA	chr13	27777223	27825425	LINC02340	-	lncRNA	14430	same	7549_ID	chr13	27810419	27824848	14430	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12975	ENST00000667353.1_1	ENST00000650869.1_1	chr12	127631079	127635875	AC079949.5	+	lncRNA	chr12	127614549	127692251	AC079949.3	+	lncRNA	4796	same	2691_ID	chr12	127631080	127635875	4796	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
12982	ENST00000667547.1_1	ENST00000539036.5_1	chr12	16573586	16600151	AC007528.1	+	lncRNA	chr12	16500585	16762193	MGST1	+	processed_transcript	37963	same	588_ID	chr12	16573587	16600151	26565	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
12991	ENST00000667708.1_1	ENST00000651054.1_3	chr4	83533336	83536728	AC067942.4	+	lncRNA	chr4	83532126	83542763	LINC00575	-	lncRNA	3392	opposite	2380_ID	chr4	83533337	83536728	3392	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
13015	ENST00000668094.1_1	ENST00000262120.10_2	chr18	9335266	9336240	AP001033.3	+	lncRNA	chr18	9334770	9402418	TWSG1	+	protein_coding	974	same	6072_ID	chr18	9335267	9336240	974	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
13018	ENST00000668194.1_1	ENST00000654263.1_3	chr17	21346116	21354837	AC068418.3	+	lncRNA	chr17	21334277	21476658	LINC02693	-	lncRNA	8721	opposite	2411_ID	chr17	21346117	21354837	8721	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
13021	ENST00000668244.1_1	ENST00000282382.8_5	chr5	114937811	114959594	AC010226.1	+	lncRNA	chr5	114914338	114961858	TMED7-TICAM2	-	protein_coding	21841	opposite	1036_ID	chr5	114937812	114959594	21783	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
13037	ENST00000668820.1_1	ENST00000584546.5_3	chr18	25034429	25049637	AC068408.2	+	lncRNA	chr18	24916342	25175128	AC090403.1	-	lncRNA	15208	opposite	2407_ID	chr18	25034430	25049637	15208	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
13038	ENST00000668826.1_1	ENST00000669090.1_1	chr20	25990427	25991879	AL078587.2	+	lncRNA	chr20	25965845	26063600	FAM182A	+	lncRNA	1452	same	4663_ID	chr20	25990428	25991879	1452	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
13052	ENST00000669020.1_3	ENST00000228741.8_2	chr12	96623340	96629374	AC008149.2	-	lncRNA	chr12	96588152	96663602	ELK3	+	protein_coding	6088	opposite	710_ID	chr12	96623341	96629374	6034	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
13057	ENST00000669093.1_1	ENST00000522676.5_6	chr4	98287835	98413050	STPG2-AS1	+	lncRNA	chr4	98105243	98893505	STPG2	-	protein_coding	125219	opposite	12571_ID	chr4	98287836	98413050	125215	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
13058	ENST00000669105.1_3	ENST00000642310.1_3	chr6	4343273	4347396	AL159166.1	-	lncRNA	chr6	4305175	4584105	AL162718.1	-	lncRNA	5407	same	5122_ID	chr6	4343274	4347396	4123	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
13060	ENST00000669110.1_3	ENST00000635422.1_1	chr10	80047815	80050322	AC010163.3	-	lncRNA	chr10	79938941	80302384	LINC00595	+	lncRNA	2507	opposite	1027_ID	chr10	80047816	80050322	2507	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
13065	ENST00000669173.1_3	ENST00000402655.6_1	chr16	78307393	78309504	AC106743.1	-	lncRNA	chr16	78133550	79246564	WWOX	+	protein_coding	2111	opposite	3641_ID	chr16	78307394	78309504	2111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
13071	ENST00000669269.1_4	ENST00000663306.1_3	chr12	54140129	54151011	CISTR	-	lncRNA	chr12	54133394	54291828	AC076968.2	+	lncRNA	10891	opposite	6655_ID	chr12	54140130	54151011	10882	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
13074	ENST00000669342.1_3	ENST00000654219.1_1	chr2	76424980	76480053	AC073091.2	-	lncRNA	chr2	76412145	76626602	AC073091.1	+	lncRNA	55073	opposite	2504_ID	chr2	76424981	76480053	55073	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
13090	ENST00000669748.1_3	ENST00000577863.2_2	chr17	12500059	12536276	AC068442.1	-	lncRNA	chr17	12453257	12546171	LINC00670	+	lncRNA	36217	opposite	2412_ID	chr17	12500060	12536276	36217	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
13095	ENST00000669833.1_3	ENST00000512223.6_3	chr12	19735250	19736208	AC137561.1	+	lncRNA	chr12	19653026	19873735	AEBP2	+	protein_coding	958	same	4165_ID	chr12	19735251	19736208	958	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
13109	ENST00000670258.1_1	ENST00000670992.1_3	chr18	37235608	37245458	AC099845.1	+	lncRNA	chr18	36786880	37380285	MIR924HG	-	lncRNA	9850	opposite	3400_ID	chr18	37235609	37245458	9850	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
13111	ENST00000670368.1_1	ENST00000602418.5_3	chr6	71948445	71950650	AL589935.3	+	lncRNA	chr6	71931159	71994635	AL589935.1	-	lncRNA	2205	opposite	5744_ID	chr6	71948446	71950650	2205	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
13125	ENST00000670668.1_1	ENST00000665121.1_3	chr15	88181918	88211719	AC103871.1	+	lncRNA	chr15	87869059	88247056	AC020687.1	-	lncRNA	29801	opposite	3488_ID	chr15	88181919	88211719	29801	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
13142	ENST00000671047.1_1	ENST00000670900.1_1	chr3	129900188	129907657	AC130888.1	+	lncRNA	chr3	129831389	129920179	LINC02021	+	lncRNA	7469	same	4077_ID	chr3	129900189	129907657	7469	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
13156	ENST00000671357.1_2	ENST00000674157.1_2	chr2	74981899	74987354	AC007387.1	+	lncRNA	chr2	74950999	75005907	AC007387.2	-	lncRNA	5455	opposite	560_ID	chr2	74981900	74987354	5455	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
13170	ENST00000671499.1_1	ENST00000283928.10_4	chr7	27913403	27916165	AC004549.1	+	lncRNA	chr7	27870195	28220414	JAZF1	-	protein_coding	2762	opposite	140_ID	chr7	27913404	27916165	2762	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
13171	ENST00000671545.1_3	ENST00000650869.1_1	chr12	127634499	127645804	AC079949.6	-	lncRNA	chr12	127614549	127692251	AC079949.3	+	lncRNA	11305	opposite	2692_ID	chr12	127634500	127645804	11305	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
13183	ENST00000673087.1_1	ENST00000678624.1_1	chr13	70711962	70713563	AL160391.1	-	lncRNA	chr13	70681911	70745870	ATXN8OS	+	lncRNA	1601	opposite	5141_ID	chr13	70711963	70713563	1601	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
13185	ENST00000673682.1_1	ENST00000451119.6_3	chr14	21566969	21571881	TMEM253	+	nonsense_mediated_decay	chr14	21558240	21572881	ZNF219	-	protein_coding	4914	opposite	12729_ID	chr14	21566970	21571881	4912	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
13192	ENST00000674020.1_1	ENST00000642310.1_3	chr6	4489031	4494243	LINC02533	+	lncRNA	chr6	4305175	4584105	AL162718.1	-	lncRNA	6972	opposite	7782_ID	chr6	4489032	4494243	5212	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
13197	ENST00000674440.1_1	ENST00000468762.3_4	chrX	113283630	113298969	AC236668.1	+	lncRNA	chrX	112859586	113302310	XACT	-	lncRNA	15411	opposite	4266_ID	chrX	113283631	113298969	15339	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
13219	ENST00000677770.1_1	ENST00000462901.5_3	chr3	88107288	88107366	AC119733.1	-	protein_coding	chr3	88104575	88199035	CGGBP1	-	protein_coding	78	same	3954_ID	chr3	88107289	88107366	78	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	3	4
22910	ENST00000280358.5_2	ENST00000527589.1_3	chr11	112038094	112043279	TEX12	+	protein_coding	chr11	112035919	112043329	AP002884.1	-	lncRNA	5185	opposite	12653_ID	chr11	112038095	112043279	5185	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
124810	ENST00000364737.1	ENST00000637876.1_4	chr7	94727538	94727679	RNU4-16P	+	snRNA	chr7	94665042	94843644	PPP1R9A-AS1	-	lncRNA	141	opposite	10662_ID	chr7	94727539	94727679	141	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
130810	ENST00000365049.1	ENST00000400277.2_2	chr1	22314308	22314412	RNU6-1022P	+	snRNA	chr1	22307594	22325135	CELA3B	+	protein_coding	104	same	10774_ID	chr1	22314309	22314412	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
13801	ENST00000365545.1	ENST00000377205.6_2	chr1	10007375	10007694	RN7SKP269	+	misc_RNA	chr1	10003532	10045556	NMNAT1	+	protein_coding	319	same	9868_ID	chr1	10007376	10007694	319	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
15531	ENST00000376593.2_3	ENST00000645030.2_3	chr2	111855921	111871762	ACOXL-AS1	-	lncRNA	chr2	111763591	112252647	MIR4435-2HG	-	lncRNA	18063	same	4331_ID	chr2	111855922	111871762	15841	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
16851	ENST00000383953.1	ENST00000615519.4_3	chr1	93302845	93302940	SNORD21	+	snoRNA	chr1	93298293	93427079	DIPK1A	-	protein_coding	95	opposite	12390_ID	chr1	93302846	93302940	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
17781	ENST00000384199.1	ENST00000598878.1_4	chr3	15474616	15474723	RNU6-1024P	-	snRNA	chr3	15457073	15482073	METTL6	-	protein_coding	107	same	10775_ID	chr3	15474617	15474723	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
19871	ENST00000384792.1	ENST00000615519.4_3	chr1	93306275	93306408	SNORA66	+	snoRNA	chr1	93298293	93427079	DIPK1A	-	protein_coding	2834	opposite	12194_ID	chr1	93306276	93306408	133	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
22071	ENST00000385216.1	ENST00000632331.1_3	chr2	189162218	189162315	MIR561	+	miRNA	chr2	189004363	189249040	LINC01090	-	lncRNA	97	opposite	8945_ID	chr2	189162219	189162315	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
23231	ENST00000390673.2_3	ENST00000541977.5_4	chr12	11174217	11175219	TAS2R19	-	protein_coding	chr12	11035185	11324143	PRH1	-	processed_transcript	1002	same	12603_ID	chr12	11174218	11175219	1002	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
23261	ENST00000390675.2_3	ENST00000541977.5_4	chr12	11182985	11184006	TAS2R31	-	protein_coding	chr12	11035185	11324143	PRH1	-	processed_transcript	1021	same	12612_ID	chr12	11182986	11184006	1021	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
23281	ENST00000390677.2_3	ENST00000541977.5_4	chr12	11060524	11062161	TAS2R13	-	protein_coding	chr12	11035185	11324143	PRH1	-	processed_transcript	1637	same	12599_ID	chr12	11060525	11062161	1637	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
24061	ENST00000391064.1	ENST00000668734.1_3	chr1	73183345	73183452	RNU6-1246P	-	snRNA	chr1	73102229	73364659	AL583808.1	-	lncRNA	107	same	10944_ID	chr1	73183346	73183452	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
25051	ENST00000396400.4_2	ENST00000541977.5_4	chr12	11081834	11087444	PRH2	+	protein_coding	chr12	11035185	11324143	PRH1	-	processed_transcript	5610	opposite	9627_ID	chr12	11081835	11087444	5610	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
25911	ENST00000401257.1	ENST00000446355.2_3	chr7	115985908	115985998	AC002066.2	-	miRNA	chr7	115878313	116139519	AC002066.1	-	lncRNA	90	same	33_ID	chr7	115985909	115985998	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
28871	ENST00000408672.1	ENST00000312719.9_3	chr6	114598548	114598642	AL136446.1	-	miRNA	chr6	114376749	114664209	HS3ST5	-	protein_coding	94	same	4914_ID	chr6	114598549	114598642	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
3004	ENST00000410005.2_3	ENST00000623661.1_5	chr21	35772409	35773370	FAM243A	-	protein_coding	chr21	35751726	35780163	SMIM11B	+	protein_coding	961	opposite	6981_ID	chr21	35772410	35773370	961	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
30661	ENST00000410394.1	ENST00000421879.5_4	chr11	61582632	61582712	MIR1908	-	miRNA	chr11	61578297	61596790	FADS1	-	protein_coding	80	same	8135_ID	chr11	61582633	61582712	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
30791	ENST00000410429.1	ENST00000560360.2_4	chr15	98617895	98617992	RNU6-1186P	-	snRNA	chr15	98581799	98836428	AC022523.1	-	lncRNA	97	same	10889_ID	chr15	98617896	98617992	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
31941	ENST00000410983.1	ENST00000454552.5_6	chr22	30817033	30817137	RNU6-564P	+	snRNA	chr22	30805243	30824977	AC004832.3	+	nonsense_mediated_decay	104	same	11339_ID	chr22	30817034	30817137	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
36061	ENST00000419886.6_3	ENST00000652448.1_1	chr19	12125546	12146503	ZNF433	-	protein_coding	chr19	12098455	12188921	AC008770.4	+	protein_coding	21010	opposite	13045_ID	chr19	12125547	12146503	20957	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
39611	ENST00000430034.1_3	ENST00000416167.7_7	chr11	2150350	2151194	AC132217.1	-	lncRNA	chr11	2150346	2160619	IGF2	-	protein_coding	844	same	4101_ID	chr11	2150351	2151194	844	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	4	4
40971	ENST00000433526.1_3	ENST00000425669.1_3	chr10	18820777	18822265	AL450384.1	-	lncRNA	chr10	18802043	18834580	AL450384.2	-	lncRNA	1488	same	5658_ID	chr10	18820778	18822265	1488	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
42421	ENST00000437557.1	ENST00000646873.1_3	chr21	45621172	45622579	AP001057.1	+	antisense	chr21	45555956	45629997	GATD3A	+	protein_coding	1407	same	6087_ID	chr21	45621173	45622579	1407	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
42461	ENST00000437753.1_3	ENST00000330208.6_1	chr1	44175062	44193014	ST3GAL3-AS1	-	lncRNA	chr1	44173203	44396837	ST3GAL3	+	protein_coding	17952	opposite	12556_ID	chr1	44175063	44193014	17952	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
44271	ENST00000442785.1_1	ENST00000624081.1_4	chr21	45670695	45671403	DNMT3L-AS1	+	lncRNA	chr21	45666234	45671581	FP565260.4	-	protein_coding	708	opposite	6833_ID	chr21	45670696	45671403	708	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
46541	ENST00000449656.1_4	ENST00000382071.6_1	chr13	24889862	24895736	C1QTNF9-AS1	-	lncRNA	chr13	24881303	24896673	C1QTNF9	+	protein_coding	5874	opposite	6499_ID	chr13	24889863	24895736	5874	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
49271	ENST00000457033.5_3	ENST00000446355.2_3	chr7	115915659	115926718	AC073130.1	-	lncRNA	chr7	115878313	116139519	AC002066.1	-	lncRNA	11129	same	2506_ID	chr7	115915660	115926718	11059	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
51201	ENST00000459467.1	ENST00000429642.2_6	chr10	1088232	1088295	RNU7-163P	-	snRNA	chr10	1085091	1094823	IDI1	-	protein_coding	63	same	11735_ID	chr10	1088233	1088295	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
52511	ENST00000466970.2	ENST00000653998.1_3	chr15	97896726	97897015	RN7SL677P	+	misc_RNA	chr15	97882922	98065262	LINC02254	-	lncRNA	289	opposite	10360_ID	chr15	97896727	97897015	289	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
53551	ENST00000473332.2	ENST00000553982.1_3	chr14	71076802	71077094	RN7SL77P	+	misc_RNA	chr14	71060030	71107921	AL357153.3	-	lncRNA	292	opposite	10426_ID	chr14	71076803	71077094	292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
53751	ENST00000474110.2	ENST00000633875.4_6	chr16	75732430	75732728	RN7SL520P	-	misc_RNA	chr16	75727790	75735359	DUXB	-	protein_coding	298	same	10247_ID	chr16	75732431	75732728	298	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
54221	ENST00000478131.2	ENST00000419766.5_3	chr7	34793035	34793333	RN7SL132P	+	misc_RNA	chr7	34386123	34797846	NPSR1-AS1	-	lncRNA	298	opposite	9967_ID	chr7	34793036	34793333	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
55331	ENST00000485340.2	ENST00000344546.8_3	chr17	73037829	73038102	RN7SL573P	+	misc_RNA	chr17	73034957	73043080	ATP5PD	-	protein_coding	273	opposite	10277_ID	chr17	73037830	73038102	273	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
55421	ENST00000485776.2	ENST00000400277.2_2	chr1	22313973	22314268	RN7SL386P	+	misc_RNA	chr1	22307594	22325135	CELA3B	+	protein_coding	295	same	10147_ID	chr1	22313974	22314268	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
55981	ENST00000490351.1_1	ENST00000474851.1_3	chr3	116078870	116088937	LSAMP-AS1	+	lncRNA	chr3	115738361	116858236	LSAMP	-	protein_coding	10067	opposite	7879_ID	chr3	116078871	116088937	10067	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
56711	ENST00000495651.2	ENST00000495817.1_4	chr3	180454195	180454491	RN7SL229P	-	misc_RNA	chr3	180426113	180588793	AC108734.4	-	lncRNA	296	same	10036_ID	chr3	180454196	180454491	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
59051	ENST00000506868.1_3	ENST00000541977.5_4	chr12	11138511	11139511	TAS2R50	-	protein_coding	chr12	11035185	11324143	PRH1	-	processed_transcript	1000	same	12626_ID	chr12	11138512	11139511	1000	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
63311	ENST00000516256.1	ENST00000650159.1_3	chr14	29451508	29451616	RNU6-864P	-	snRNA	chr14	29344609	29501988	LINC02326	-	lncRNA	108	same	11568_ID	chr14	29451509	29451616	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
63741	ENST00000516392.1	ENST00000330208.6_1	chr1	44182137	44182227	RNU6-1058P	+	snRNA	chr1	44173203	44396837	ST3GAL3	+	protein_coding	90	same	10804_ID	chr1	44182138	44182227	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
65341	ENST00000516863.1	ENST00000446355.2_3	chr7	116073267	116073354	snoZ185	+	snoRNA	chr7	115878313	116139519	AC002066.1	-	lncRNA	87	opposite	12476_ID	chr7	116073268	116073354	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
65771	ENST00000516973.1	ENST00000554360.5_3	chr14	58759010	58759106	RNU6-341P	-	snRNA	chr14	58732082	58764847	PSMA3-AS1	-	lncRNA	96	same	11167_ID	chr14	58759011	58759106	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
66681	ENST00000517212.1	ENST00000421176.4_2	chr19	44589365	44589456	RNU6-902P	-	snRNA	chr19	44576311	44593766	ZNF284	+	protein_coding	91	opposite	11598_ID	chr19	44589366	44589456	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
67111	ENST00000517286.1	ENST00000541977.5_4	chr12	11315698	11315763	RNU6-676P	+	snRNA	chr12	11035185	11324143	PRH1	-	processed_transcript	65	opposite	11427_ID	chr12	11315699	11315763	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
69761	ENST00000526170.5_2	ENST00000525626.5_3	chr11	695795	705028	TMEM80	+	protein_coding	chr11	686931	706715	DEAF1	-	processed_transcript	9601	opposite	12740_ID	chr11	695796	705028	9233	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
71161	ENST00000530837.1_1	ENST00000659342.1_3	chr11	22134993	22138547	AC107882.1	+	lncRNA	chr11	22031947	22191547	AC116534.1	-	lncRNA	3554	opposite	3696_ID	chr11	22134994	22138547	3554	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
71461	ENST00000531678.1_4	ENST00000541977.5_4	chr12	11243885	11244912	TAS2R43	-	protein_coding	chr12	11035185	11324143	PRH1	-	processed_transcript	1027	same	12618_ID	chr12	11243886	11244912	1027	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
71921	ENST00000533467.1_3	ENST00000541977.5_4	chr12	11213963	11214893	TAS2R46	-	protein_coding	chr12	11035185	11324143	PRH1	-	processed_transcript	930	same	12621_ID	chr12	11213964	11214893	930	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
72341	ENST00000535746.5_1	ENST00000544461.1_4	chr12	8474471	8482210	AC092745.1	+	lncRNA	chr12	8448581	8549399	LINC00937	-	lncRNA	7739	opposite	3139_ID	chr12	8474472	8482210	7739	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
72711	ENST00000538101.1_1	ENST00000530285.5_6	chr11	62313470	62315171	AP001363.2	+	lncRNA	chr11	62301455	62323707	AHNAK	-	protein_coding	1701	opposite	6124_ID	chr11	62313471	62315171	1701	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
72881	ENST00000538986.1_2	ENST00000541977.5_4	chr12	11149093	11150474	TAS2R20	-	protein_coding	chr12	11035185	11324143	PRH1	-	processed_transcript	1381	same	12605_ID	chr12	11149094	11150474	1381	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
73011	ENST00000539585.1_2	ENST00000541977.5_4	chr12	11285556	11287243	TAS2R30	-	protein_coding	chr12	11035185	11324143	PRH1	-	processed_transcript	1687	same	12609_ID	chr12	11285557	11287243	1687	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
73321	ENST00000541892.1_1	ENST00000540848.5_4	chr12	16720344	16726874	AC007552.2	+	lncRNA	chr12	16703132	16763460	LMO3	-	protein_coding	6530	opposite	597_ID	chr12	16720345	16726874	6530	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
73671	ENST00000543969.1_3	ENST00000541977.5_4	chr12	11318688	11323952	AC134349.1	-	lncRNA	chr12	11035185	11324143	PRH1	-	processed_transcript	5264	same	4127_ID	chr12	11318689	11323952	5264	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
74251	ENST00000546789.1_1	ENST00000547423.5_7	chr12	56702651	56703233	AC073896.3	+	lncRNA	chr12	56679745	56709828	AC073896.1	-	protein_coding	582	opposite	2553_ID	chr12	56702652	56703233	582	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
74411	ENST00000547177.1_1	ENST00000209875.9_4	chr12	54656398	54672847	SCAT2	+	lncRNA	chr12	54624725	54673906	CBX5	-	protein_coding	16449	opposite	12001_ID	chr12	54656399	54672847	16449	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
74461	ENST00000547473.1_3	ENST00000652448.1_1	chr19	12128702	12163782	AC008770.1	-	nonsense_mediated_decay	chr19	12098455	12188921	AC008770.4	+	protein_coding	35080	opposite	815_ID	chr19	12128703	12163782	35080	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
74531	ENST00000547628.2_4	ENST00000652448.1_1	chr19	12154619	12163776	ZNF878	-	protein_coding	chr19	12098455	12188921	AC008770.4	+	protein_coding	9157	opposite	13080_ID	chr19	12154620	12163776	9157	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
75021	ENST00000549756.1_1	ENST00000565857.1_3	chr16	15702330	15704420	AC026401.1	+	lncRNA	chr16	15661839	15718885	BMERB1	+	protein_coding	2090	same	2143_ID	chr16	15702331	15704420	2090	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
76361	ENST00000555255.1_2	ENST00000556928.5_4	chr15	94443929	94527379	LINC01580	+	lncRNA	chr15	94433691	94581641	LINC01579	-	lncRNA	89720	opposite	7654_ID	chr15	94443930	94527379	83450	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
76611	ENST00000555922.1_1	ENST00000551935.5_3	chr14	34509302	34528506	EGLN3-AS1	+	lncRNA	chr14	34454586	34931980	EGLN3	-	processed_transcript	19204	opposite	6879_ID	chr14	34509303	34528506	19204	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
77691	ENST00000558696.1_1	ENST00000557794.5_3	chr15	101874641	101877633	PCSK6-AS1	+	lncRNA	chr15	101844950	102065405	PCSK6	-	processed_transcript	2992	opposite	9517_ID	chr15	101874642	101877633	2992	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
78531	ENST00000560560.4_3	ENST00000560873.1_3	chr15	81188531	81202118	AC027808.2	-	lncRNA	chr15	81188530	81241208	AC027808.1	-	lncRNA	13587	same	2240_ID	chr15	81188532	81202118	13587	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
79351	ENST00000562538.1_3	ENST00000490021.2_1	chr1	110235738	110236364	AC000032.1	-	lncRNA	chr1	110230435	110251661	GSTM1	+	processed_transcript	626	opposite	14_ID	chr1	110235739	110236364	626	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
80601	ENST00000564919.1_1	ENST00000565934.1_1	chr16	8947168	8948204	AC022167.1	+	lncRNA	chr16	8941961	8954274	AC022167.2	+	lncRNA	1036	same	1837_ID	chr16	8947169	8948204	1036	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
81451	ENST00000566639.1_1	ENST00000649061.1_3	chr16	81064374	81065090	AC092718.4	+	lncRNA	chr16	81051807	81069340	AC092718.2	-	lncRNA	716	opposite	3128_ID	chr16	81064375	81065090	716	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
83471	ENST00000572499.1_1	ENST00000573780.5_4	chr17	202428	207372	AC129507.2	+	lncRNA	chr17	131559	236045	RPH3AL	-	protein_coding	4944	opposite	4049_ID	chr17	202429	207372	4944	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
83941	ENST00000574705.1_1	ENST00000577031.5_3	chr16	4385870	4387819	AC012676.1	-	lncRNA	chr16	4381549	4401266	PAM16	-	protein_coding	1949	same	1424_ID	chr16	4385871	4387819	1949	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
85971	ENST00000577947.1	ENST00000620144.1_3	chr17	36875943	36876001	MIR4726	+	miRNA	chr17	36871580	36876525	AC006449.3	-	lncRNA	58	opposite	8716_ID	chr17	36875944	36876001	58	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
87251	ENST00000578752.1	ENST00000445552.6_6	chr17	44614899	44615180	RN7SL199P	+	misc_RNA	chr17	44594067	44657036	ARL17A	-	protein_coding	281	opposite	10012_ID	chr17	44614900	44615180	281	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
87761	ENST00000579050.1_1	ENST00000583940.5_5	chr17	27896597	27897537	AC104564.3	+	lncRNA	chr17	27894197	27898720	TP53I13	+	protein_coding	940	same	3554_ID	chr17	27896598	27897537	940	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
88821	ENST00000579686.1	ENST00000555074.1_4	chr14	23426158	23426238	MIR4707	-	miRNA	chr14	23415478	23451467	AL132780.3	-	protein_coding	80	same	8696_ID	chr14	23426159	23426238	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
89071	ENST00000579822.1	ENST00000583700.5_5	chr18	20513311	20513401	MIR4741	+	miRNA	chr18	20378223	20516846	RBBP8	+	protein_coding	90	same	8727_ID	chr18	20513312	20513401	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
89951	ENST00000580344.1	ENST00000630391.1_3	chr3	24562852	24562926	MIR4792	-	miRNA	chr3	24541034	24723202	THRB-AS1	+	lncRNA	74	opposite	8777_ID	chr3	24562853	24562926	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
92461	ENST00000581788.1_1	ENST00000404796.3_2	chr9	21858908	21861925	AL359922.2	-	lncRNA	chr9	21802634	22029593	AL359922.1	+	nonsense_mediated_decay	3017	opposite	5507_ID	chr9	21858909	21861925	3017	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
92831	ENST00000581926.1	ENST00000585656.1_3	chr19	11578090	11578412	RN7SL669P	+	misc_RNA	chr19	11577054	11616513	AC008481.3	-	nonsense_mediated_decay	322	opposite	10354_ID	chr19	11578091	11578412	322	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
93161	ENST00000582110.1	ENST00000427022.1_1	chr21	35677429	35677493	AP000318.1	+	miRNA	chr21	35577355	35697334	AP000317.1	+	lncRNA	64	same	5975_ID	chr21	35677430	35677493	64	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
93301	ENST00000582190.1	ENST00000571854.5_3	chr17	1733134	1733217	AC130689.1	-	miRNA	chr17	1704155	1733928	SMYD4	-	protein_coding	83	same	4075_ID	chr17	1733135	1733217	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
93401	ENST00000582233.1_3	ENST00000583184.1_1	chr18	29671257	29672082	AC011825.4	-	lncRNA	chr18	29598791	29691742	AC011825.3	+	lncRNA	825	opposite	1303_ID	chr18	29671258	29672082	825	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
93941	ENST00000582552.1	ENST00000646636.1_1	chr2	87929273	87929353	MIR4435-1	+	miRNA	chr2	87755024	87936259	CYTOR	+	lncRNA	80	same	8535_ID	chr2	87929274	87929353	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
95141	ENST00000583191.1_1	ENST00000434399.5_3	chr7	30565346	30573229	AC005154.4	+	lncRNA	chr7	30555924	30602441	GARS1-DT	-	lncRNA	7883	opposite	242_ID	chr7	30565347	30573229	7883	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
95941	ENST00000583650.1	ENST00000613522.1_3	chr20	5982378	5982674	RN7SL498P	+	misc_RNA	chr20	5971588	5986467	MCM8-AS1	-	lncRNA	296	opposite	10229_ID	chr20	5982379	5982674	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
97621	ENST00000584548.1	ENST00000428825.8_3	chr10	50193556	50193632	MIR4294	-	miRNA	chr10	50184598	50201091	AC060234.2	-	lncRNA	76	same	8489_ID	chr10	50193557	50193632	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
98751	ENST00000585193.1_1	ENST00000650446.1_1	chr17	65240952	65241922	AC007448.4	+	lncRNA	chr17	65240397	65269619	AC007448.5	+	lncRNA	970	same	576_ID	chr17	65240953	65241922	970	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
98781	ENST00000585204.1	ENST00000657703.1_3	chr3	40250495	40250793	RN7SL411P	+	misc_RNA	chr3	40102600	40342817	EIF1B-AS1	-	lncRNA	298	opposite	10164_ID	chr3	40250496	40250793	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
99881	ENST00000587817.5_3	ENST00000588873.1_7	chr19	37597635	37663628	ZNF585A	-	nonsense_mediated_decay	chr19	37583920	37697976	AC012309.1	-	protein_coding	66008	same	13056_ID	chr19	37597636	37663628	65993	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
101691	ENST00000594077.1_1	ENST00000247706.4_4	chr19	17407004	17407504	AC010463.3	-	lncRNA	chr19	17402939	17414234	ABHD8	-	protein_coding	500	same	1081_ID	chr19	17407005	17407504	500	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
104031	ENST00000601123.1	ENST00000541977.5_4	chr12	11187086	11187275	AC018630.1	+	protein_coding	chr12	11035185	11324143	PRH1	-	processed_transcript	189	opposite	1642_ID	chr12	11187087	11187275	189	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
104411	ENST00000602293.5_4	ENST00000602662.1_5	chr1	19923560	19983419	MICOS10-NBL1	+	nonsense_mediated_decay	chr1	19923472	19984549	NBL1	+	protein_coding	59860	same	7948_ID	chr1	19923561	19983419	59859	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
105571	ENST00000603360.1_3	ENST00000602772.5_2	chrX	73177893	73189320	AL353804.2	-	lncRNA	chrX	73164162	73290243	JPX	+	lncRNA	11427	opposite	5271_ID	chrX	73177894	73189320	11427	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
106261	ENST00000605044.1_1	ENST00000441270.6_3	chr20	57451646	57452036	AL121917.2	-	lncRNA	chr20	57438582	57463847	AL121917.1	-	lncRNA	390	same	4774_ID	chr20	57451647	57452036	390	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
106661	ENST00000605985.1_1	ENST00000396652.1_4	chr7	16510808	16510998	AC005014.3	+	lncRNA	chr7	16501167	16570205	SOSTDC1	-	protein_coding	190	opposite	214_ID	chr7	16510809	16510998	190	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
106941	ENST00000606229.1_1	ENST00000397064.6_2	chr2	37436017	37439820	AC007390.1	+	lncRNA	chr2	37423630	37440868	CEBPZOS	+	protein_coding	3803	same	566_ID	chr2	37436018	37439820	3803	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
107071	ENST00000606384.1_1	ENST00000482985.4_1	chr10	81422947	81424542	AL132656.3	+	lncRNA	chr10	81420646	81437752	AL132656.2	+	lncRNA	1595	same	4810_ID	chr10	81422948	81424542	1595	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
107091	ENST00000606393.1_1	ENST00000606150.5_3	chr6	13290249	13290722	AL008729.2	-	lncRNA	chr6	13279526	13295818	AL008729.1	-	lncRNA	473	same	4434_ID	chr6	13290250	13290722	473	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
107581	ENST00000606839.1_1	ENST00000465477.5_2	chr3	158500335	158500913	AC080013.2	+	lncRNA	chr3	158450115	158501859	AC080013.1	+	lncRNA	578	same	2696_ID	chr3	158500336	158500913	578	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
108261	ENST00000607464.1_1	ENST00000607320.5_7	chr3	16355945	16356494	AC090948.1	+	lncRNA	chr3	16355080	16368374	RFTN1	-	nonsense_mediated_decay	549	opposite	2950_ID	chr3	16355946	16356494	549	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
108501	ENST00000607691.1_1	ENST00000512406.5_3	chr5	8445061	8445648	AC091965.4	-	lncRNA	chr5	8387750	8457677	AC091965.1	-	lncRNA	587	same	3024_ID	chr5	8445062	8445648	587	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
108521	ENST00000607697.1	ENST00000661193.1_3	chr8	6503575	6506025	CTD-2541M15.4	+	lincRNA	chr8	6474830	6565730	MCPH1-AS1	-	lncRNA	2450	opposite	6738_ID	chr8	6503576	6506025	2450	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
109021	ENST00000608142.1_1	ENST00000646636.1_1	chr2	87777013	87777553	AC133644.1	-	lncRNA	chr2	87755024	87936259	CYTOR	+	lncRNA	540	opposite	4116_ID	chr2	87777014	87777553	540	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
109411	ENST00000608677.1_1	ENST00000454552.5_6	chr22	30816500	30816901	AC004832.5	+	lncRNA	chr22	30805243	30824977	AC004832.3	+	nonsense_mediated_decay	401	same	180_ID	chr22	30816501	30816901	401	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
109661	ENST00000608952.1_1	ENST00000454552.5_6	chr22	30817194	30817525	AC004832.4	-	lncRNA	chr22	30805243	30824977	AC004832.3	+	nonsense_mediated_decay	331	opposite	176_ID	chr22	30817195	30817525	331	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
111421	ENST00000611343.1_1	ENST00000560800.5_5	chr15	96682700	96683681	AC012409.3	-	lncRNA	chr15	96670597	96870250	NR2F2-AS1	-	lncRNA	981	same	1377_ID	chr15	96682701	96683681	981	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
111491	ENST00000611460.1_1	ENST00000252979.6_4	chr20	25661416	25661882	AL031673.1	+	lncRNA	chr20	25653830	25677489	ZNF337	-	protein_coding	466	opposite	4545_ID	chr20	25661417	25661882	466	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
112031	ENST00000612923.1_1	ENST00000560800.5_5	chr15	96774125	96774374	AC012409.4	+	lncRNA	chr15	96670597	96870250	NR2F2-AS1	-	lncRNA	249	opposite	1379_ID	chr15	96774126	96774374	249	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
115391	ENST00000620744.1_1	ENST00000583184.1_1	chr18	29610997	29611322	AC009831.3	+	lncRNA	chr18	29598791	29691742	AC011825.3	+	lncRNA	325	same	999_ID	chr18	29610998	29611322	325	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
116621	ENST00000623548.1_1	ENST00000554360.5_3	chr14	58754750	58755876	LINC00216	+	lncRNA	chr14	58732082	58764847	PSMA3-AS1	-	lncRNA	1126	opposite	7533_ID	chr14	58754751	58755876	1126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
120661	ENST00000648326.1_2	ENST00000648025.1_1	chr6	3849606	3851551	FAM50B	+	protein_coding	chr6	3832169	3894477	AL391422.2	+	lncRNA	1948	same	6989_ID	chr6	3849607	3851551	1945	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
121801	ENST00000650320.1_1	ENST00000560800.5_5	chr15	96779162	96780239	LINC02157	+	lncRNA	chr15	96670597	96870250	NR2F2-AS1	-	lncRNA	1226	opposite	7739_ID	chr15	96779163	96780239	1077	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
122301	ENST00000651253.2_2	ENST00000597134.5_5	chr19	58331088	58354856	ZNF587B	+	protein_coding	chr19	58331086	58367601	AC010522.1	+	protein_coding	26518	same	13057_ID	chr19	58331089	58354856	23768	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
122711	ENST00000652283.1_1	ENST00000502664.6_8	chr4	144931389	144933751	AC093890.2	+	lncRNA	chr4	144917256	144940533	GYPB	-	protein_coding	2362	opposite	3257_ID	chr4	144931390	144933751	2362	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
124461	ENST00000656103.1_3	ENST00000460895.5_1	chr3	134493384	134515335	AC016931.1	-	lncRNA	chr3	134334206	134670493	EPHB1	+	protein_coding	21951	opposite	1573_ID	chr3	134493385	134515335	21951	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
124721	ENST00000656765.1_1	ENST00000494022.1_4	chr6	32076182	32080626	AL662884.5	+	lncRNA	chr6	32065952	32085387	AL662884.2	-	lncRNA	4444	opposite	5875_ID	chr6	32076183	32080626	4444	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
124801	ENST00000656923.1_1	ENST00000527970.1_4	chr11	3532788	3542116	AC127526.4	+	lncRNA	chr11	3502749	3602441	AC127526.2	-	lncRNA	9328	opposite	4042_ID	chr11	3532789	3542116	9328	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
125091	ENST00000657505.1_3	ENST00000476405.1_3	chr22	18283487	18284801	AC016026.2	+	lncRNA	chr22	18270417	18294263	AC016026.1	-	retained_intron	1314	opposite	1515_ID	chr22	18283488	18284801	1314	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
126281	ENST00000659516.1_1	ENST00000664173.1_1	chr12	9500625	9501864	AC009533.4	+	lncRNA	chr12	9499651	9549436	LINC02367	+	lncRNA	1239	same	968_ID	chr12	9500626	9501864	1239	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
126451	ENST00000660029.1_3	ENST00000560800.5_5	chr15	96714803	96717568	AC012409.1	+	lncRNA	chr15	96670597	96870250	NR2F2-AS1	-	lncRNA	2765	opposite	1376_ID	chr15	96714804	96717568	2765	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
126611	ENST00000660274.1_1	ENST00000435643.1_1	chr2	208082255	208083869	AC007879.5	+	lncRNA	chr2	208038357	208087514	AC007879.1	+	lncRNA	1614	same	659_ID	chr2	208082256	208083869	1614	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
126781	ENST00000660778.1_3	ENST00000560360.2_4	chr15	98625221	98646990	LINC01582	-	lncRNA	chr15	98581799	98836428	AC022523.1	-	lncRNA	21769	same	7655_ID	chr15	98625222	98646990	21769	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
129451	ENST00000666479.1_3	ENST00000612891.4_3	chr2	74642548	74643908	AC005041.4	+	lncRNA	chr2	74641302	74648687	C2orf81	-	protein_coding	1360	opposite	226_ID	chr2	74642549	74643908	1360	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
131311	ENST00000670579.1_3	ENST00000657492.1_1	chr3	194428738	194430124	AC106706.2	-	lncRNA	chr3	194423395	194448395	AC106706.1	+	lncRNA	1386	opposite	3635_ID	chr3	194428739	194430124	1386	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
112610	ENST00000364089.1	ENST00000505522.6_3	chr5	138614469	138614667	SNORA74A	+	snoRNA	chr5	138609819	138620588	SNHG4	+	lncRNA	198	same	12207_ID	chr5	138614470	138614667	198	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
112710	ENST00000364089.1	ENST00000509400.5_3	chr5	138614469	138614667	SNORA74A	+	snoRNA	chr5	138456723	138629223	SIL1	-	processed_transcript	198	opposite	12208_ID	chr5	138614470	138614667	198	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
23181	ENST00000390673.2_3	ENST00000381852.4_4	chr12	11174217	11175219	TAS2R19	-	protein_coding	chr12	11090006	11324172	TAS2R14	-	processed_transcript	1002	same	12602_ID	chr12	11174218	11175219	1002	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
23211	ENST00000390675.2_3	ENST00000381852.4_4	chr12	11182985	11184006	TAS2R31	-	protein_coding	chr12	11090006	11324172	TAS2R14	-	processed_transcript	1021	same	12614_ID	chr12	11182986	11184006	1021	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
28691	ENST00000408637.1	ENST00000662789.1_3	chr12	65332802	65332897	RNU6ATAC42P	+	snRNA	chr12	65277504	65384406	LINC02389	+	lncRNA	95	same	11684_ID	chr12	65332803	65332897	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
31901	ENST00000410983.1	ENST00000431544.2_3	chr22	30817033	30817137	RNU6-564P	+	snRNA	chr22	30781895	30817760	RNF215	-	protein_coding	104	opposite	11341_ID	chr22	30817034	30817137	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
32811	ENST00000411694.1_3	ENST00000646873.1_3	chr21	45578622	45579955	LINC01678	-	lncRNA	chr21	45555956	45629997	GATD3A	+	protein_coding	1337	opposite	7666_ID	chr21	45578623	45579955	1333	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
33001	ENST00000411956.1_1	ENST00000646873.1_3	chr21	45595371	45596336	AP001056.1	+	lncRNA	chr21	45555956	45629997	GATD3A	+	protein_coding	965	same	6083_ID	chr21	45595372	45596336	965	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
33231	ENST00000412409.3_3	ENST00000606382.1_3	chr2	59468076	59960531	AC007179.2	-	lncRNA	chr2	59445814	60327335	AC007100.1	-	lncRNA	494694	same	518_ID	chr2	59468077	59960531	492455	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
59011	ENST00000506868.1_3	ENST00000381852.4_4	chr12	11138511	11139511	TAS2R50	-	protein_coding	chr12	11090006	11324172	TAS2R14	-	processed_transcript	1000	same	12624_ID	chr12	11138512	11139511	1000	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
60121	ENST00000510459.2_3	ENST00000662789.1_3	chr12	65314624	65376304	LINC02231	-	lncRNA	chr12	65277504	65384406	LINC02389	+	lncRNA	61680	opposite	7750_ID	chr12	65314625	65376304	61680	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
67071	ENST00000517286.1	ENST00000381852.4_4	chr12	11315698	11315763	RNU6-676P	+	snRNA	chr12	11090006	11324172	TAS2R14	-	processed_transcript	65	opposite	11428_ID	chr12	11315699	11315763	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
71421	ENST00000531678.1_4	ENST00000381852.4_4	chr12	11243885	11244912	TAS2R43	-	protein_coding	chr12	11090006	11324172	TAS2R14	-	processed_transcript	1027	same	12620_ID	chr12	11243886	11244912	1027	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
71881	ENST00000533467.1_3	ENST00000381852.4_4	chr12	11213963	11214893	TAS2R46	-	protein_coding	chr12	11090006	11324172	TAS2R14	-	processed_transcript	930	same	12623_ID	chr12	11213964	11214893	930	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
72841	ENST00000538986.1_2	ENST00000381852.4_4	chr12	11149093	11150474	TAS2R20	-	protein_coding	chr12	11090006	11324172	TAS2R14	-	processed_transcript	1381	same	12607_ID	chr12	11149094	11150474	1381	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
72971	ENST00000539585.1_2	ENST00000381852.4_4	chr12	11285556	11287243	TAS2R30	-	protein_coding	chr12	11090006	11324172	TAS2R14	-	processed_transcript	1687	same	12610_ID	chr12	11285557	11287243	1687	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
73631	ENST00000543969.1_3	ENST00000381852.4_4	chr12	11318688	11323952	AC134349.1	-	lncRNA	chr12	11090006	11324172	TAS2R14	-	processed_transcript	5264	same	4126_ID	chr12	11318689	11323952	5264	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
98271	ENST00000584986.1_3	ENST00000583413.4_3	chr17	27918720	27919259	AC104564.4	-	lncRNA	chr17	27909082	27921072	GIT1	-	protein_coding	539	same	3557_ID	chr17	27918721	27919259	539	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
103251	ENST00000598764.1	ENST00000646873.1_3	chr21	45587817	45593580	AP001055.1	-	protein_coding	chr21	45555956	45629997	GATD3A	+	protein_coding	5763	opposite	6081_ID	chr21	45587818	45593580	5763	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
103651	ENST00000600090.1_3	ENST00000596334.5_4	chr22	20052074	20053228	AC006547.3	-	lncRNA	chr22	20050533	20058092	AC006547.1	-	lncRNA	1154	same	481_ID	chr22	20052075	20053228	1154	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
10396	ENST00000601123.1	ENST00000381852.4_4	chr12	11187086	11187275	AC018630.1	+	protein_coding	chr12	11090006	11324172	TAS2R14	-	processed_transcript	189	opposite	1641_ID	chr12	11187087	11187275	189	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
109351	ENST00000608677.1_1	ENST00000431544.2_3	chr22	30816500	30816901	AC004832.5	+	lncRNA	chr22	30781895	30817760	RNF215	-	protein_coding	401	opposite	178_ID	chr22	30816501	30816901	401	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
109601	ENST00000608952.1_1	ENST00000431544.2_3	chr22	30817194	30817525	AC004832.4	-	lncRNA	chr22	30781895	30817760	RNF215	-	protein_coding	331	same	175_ID	chr22	30817195	30817525	331	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
111241	ENST00000610970.1_3	ENST00000317201.6_3	chr7	27168125	27170399	HOXA4	-	protein_coding	chr7	27146630	27179838	HOXA3	-	protein_coding	2274	same	7253_ID	chr7	27168126	27170399	2274	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
116421	ENST00000623188.1_3	ENST00000646873.1_3	chr21	45593986	45608568	FP565260.5	-	lncRNA	chr21	45555956	45629997	GATD3A	+	protein_coding	14582	opposite	7075_ID	chr21	45593987	45608568	14582	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
119201	ENST00000641044.1_2	ENST00000496968.5_4	chr7	144009556	144019761	OR2A1	+	protein_coding	chr7	143997563	144052613	OR2A1-AS1	-	lncRNA	10205	opposite	9373_ID	chr7	144009557	144019761	10205	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
120051	ENST00000645813.1_3	ENST00000646873.1_3	chr21	45592051	45614221	AP001056.2	-	lncRNA	chr21	45555956	45629997	GATD3A	+	protein_coding	22170	opposite	6086_ID	chr21	45592052	45614221	22170	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	4
32010	ENST00000300778.4_4	ENST00000420726.6_4	chr11	5443340	5444436	OR51Q1	+	protein_coding	chr11	5324673	5526843	OR51B5	-	processed_transcript	1096	opposite	9433_ID	chr11	5443341	5444436	1096	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
48610	ENST00000322641.5_2	ENST00000420726.6_4	chr11	5509914	5510979	OR52D1	+	protein_coding	chr11	5324673	5526843	OR51B5	-	processed_transcript	1065	opposite	9439_ID	chr11	5509915	5510979	1065	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
95610	ENST00000363231.1	ENST00000412409.3_3	chr2	59874755	59874858	RNU6-508P	+	snRNA	chr2	59468076	59960531	AC007179.2	-	lncRNA	103	opposite	11293_ID	chr2	59874756	59874858	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
15981	ENST00000380211.1_2	ENST00000420726.6_4	chr11	5461799	5462744	OR51I1	-	protein_coding	chr11	5324673	5526843	OR51B5	-	processed_transcript	945	same	9419_ID	chr11	5461800	5462744	945	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
16021	ENST00000380219.1_2	ENST00000420726.6_4	chr11	5372737	5373676	OR51B6	+	protein_coding	chr11	5324673	5526843	OR51B5	-	processed_transcript	939	opposite	9411_ID	chr11	5372738	5373676	939	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
29051	ENST00000408726.1	ENST00000412409.3_3	chr2	59468755	59468837	AC007131.3	-	miRNA	chr2	59468076	59960531	AC007179.2	-	lncRNA	82	same	512_ID	chr2	59468756	59468837	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
116872	ENST00000624187.1_3	ENST00000420726.6_4	chr11	5344588	5345527	OR51B2	-	protein_coding	chr11	5324673	5526843	OR51B5	-	processed_transcript	939	same	9402_ID	chr11	5344589	5345527	939	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
119412	ENST00000641529.1_1	ENST00000420726.6_4	chr11	5405041	5414493	OR51M1	+	processed_transcript	chr11	5324673	5526843	OR51B5	-	processed_transcript	9452	opposite	9428_ID	chr11	5405042	5414493	9452	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
119652	ENST00000641930.1_2	ENST00000420726.6_4	chr11	5470552	5477748	OR51I2	+	protein_coding	chr11	5324673	5526843	OR51B5	-	processed_transcript	7196	opposite	9422_ID	chr11	5470553	5477748	7196	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
120401	ENST00000648110.1_1	ENST00000412409.3_3	chr2	59661686	59669325	AC007179.1	+	lncRNA	chr2	59468076	59960531	AC007179.2	-	lncRNA	7710	opposite	516_ID	chr2	59661687	59669325	7639	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
128811	ENST00000665127.1_3	ENST00000432541.5_3	chr7	116731731	116737316	AC002542.6	-	lncRNA	chr7	116712480	116785612	ST7-AS2	-	lncRNA	5585	same	64_ID	chr7	116731732	116737316	5585	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
10	ENST00000157600.8_4	ENST00000439407.1_3	chr3	8543508	8616354	LMCD1	+	protein_coding	chr3	8540294	8653610	LMCD1-AS1	-	lncRNA	72862	opposite	7833_ID	chr3	8543509	8616354	72846	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
29	ENST00000221486.6_3	ENST00000589765.1_3	chr19	12917397	12924454	RNASEH2A	+	protein_coding	chr19	12884972	12983554	HOOK2	-	processed_transcript	7057	opposite	10535_ID	chr19	12917398	12924454	7057	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
41	ENST00000226207.6_4	ENST00000399342.6_1	chr17	10395623	10421859	MYH1	-	protein_coding	chr17	10286448	10441179	AC005323.2	+	lncRNA	26236	opposite	9199_ID	chr17	10395624	10421859	26236	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
47	ENST00000228936.6_5	ENST00000527783.1_1	chr12	14978502	14996460	ART4	-	protein_coding	chr12	14956610	15059520	C12orf60	+	processed_transcript	17958	opposite	6349_ID	chr12	14978503	14996460	17958	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
62	ENST00000234256.4_2	ENST00000653778.1_3	chr2	65216532	65250999	SLC1A4	+	protein_coding	chr2	65129438	65283302	LINC02245	-	lncRNA	35389	opposite	12078_ID	chr2	65216533	65250999	34467	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
65	ENST00000236979.2_4	ENST00000447289.1_1	chr2	217724180	217724787	TNP1	-	protein_coding	chr2	217559186	217858722	AC007563.2	+	lncRNA	607	opposite	12754_ID	chr2	217724181	217724787	607	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
71	ENST00000239151.5_3	ENST00000465846.6_1	chr17	46668618	46671323	HOXB5	-	protein_coding	chr17	46626991	46679694	HOXB-AS3	+	lncRNA	2705	opposite	7266_ID	chr17	46668619	46671323	2705	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
95	ENST00000245479.3_3	ENST00000674828.1_1	chr17	70117160	70122557	SOX9	+	protein_coding	chr17	70029912	70217089	AC007461.1	-	lncRNA	5397	opposite	12498_ID	chr17	70117161	70122557	5397	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
106	ENST00000249499.8_3	ENST00000440016.6_3	chr2	176987446	176989665	HOXD9	+	protein_coding	chr2	176986338	177001741	HOXD-AS2	-	lncRNA	2219	opposite	7284_ID	chr2	176987447	176989665	2219	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
110	ENST00000250366.6_8	ENST00000594512.1_1	chr19	51503805	51512837	AC011473.4	-	nonsense_mediated_decay	chr19	51471465	51515385	AC011483.1	+	lncRNA	13564	opposite	1242_ID	chr19	51503806	51512837	9032	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
127	ENST00000254976.7_6	ENST00000421143.6_3	chr20	10199477	10288066	SNAP25	+	protein_coding	chr20	10006722	10349367	SNAP25-AS1	-	lncRNA	88589	opposite	12142_ID	chr20	10199478	10288066	88589	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
128	ENST00000255008.5_2	ENST00000440921.6_3	chr20	23015948	23019874	SSTR4	+	protein_coding	chr20	23011499	23019878	AL049651.2	+	lncRNA	3926	same	12552_ID	chr20	23015949	23019874	3926	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
132	ENST00000255381.2_4	ENST00000399342.6_1	chr17	10346606	10372876	MYH4	-	protein_coding	chr17	10286448	10441179	AC005323.2	+	lncRNA	26270	opposite	9202_ID	chr17	10346607	10372876	26270	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
134	ENST00000256103.3_4	ENST00000524085.2_1	chr8	82352560	82359674	PMP2	-	protein_coding	chr8	82351670	82434053	AC018616.1	+	lncRNA	7114	opposite	9591_ID	chr8	82352561	82359674	7114	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
135	ENST00000256104.5_4	ENST00000524085.2_1	chr8	82390653	82395468	FABP4	-	protein_coding	chr8	82351670	82434053	AC018616.1	+	lncRNA	4818	opposite	6954_ID	chr8	82390654	82395468	4815	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
139	ENST00000256460.8_4	ENST00000426518.5_1	chr3	9799030	9811631	CAMK1	-	protein_coding	chr3	9792762	9829903	OGG1	+	protein_coding	12646	opposite	6545_ID	chr3	9799031	9811631	12601	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
149	ENST00000258829.6_4	ENST00000634305.1_1	chr14	37049208	37051819	NKX2-8	-	protein_coding	chr14	36789958	37125368	AL132857.1	+	lncRNA	2611	opposite	9270_ID	chr14	37049209	37051819	2611	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
155	ENST00000260113.7_2	ENST00000523860.5_3	chr8	75736768	75767264	PI15	+	protein_coding	chr8	75711018	75779160	AC011632.1	-	lncRNA	30496	opposite	9553_ID	chr8	75736769	75767264	30496	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
159	ENST00000261058.3_2	ENST00000595232.2_6	chr3	107096285	107097482	CCDC54	+	protein_coding	chr3	106991513	107140151	AC063944.1	-	lncRNA	1197	opposite	6576_ID	chr3	107096286	107097482	1197	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
178	ENST00000266025.4_4	ENST00000606589.1_1	chr3	50392180	50396952	TMEM115	-	protein_coding	chr3	50388322	50405354	Z84492.2	+	protein_coding	4772	opposite	12713_ID	chr3	50392181	50396952	4772	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
184	ENST00000267015.4_4	ENST00000550474.5_1	chr12	54756228	54758270	GPR84	-	protein_coding	chr12	54747444	54891472	AC079313.2	+	lncRNA	2043	opposite	7169_ID	chr12	54756229	54758270	2042	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
193	ENST00000269967.4_2	ENST00000598758.5_5	chr19	41816076	41830778	CCDC97	+	protein_coding	chr19	41807491	41847935	TGFB1	-	processed_transcript	14702	opposite	6580_ID	chr19	41816077	41830778	14702	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
198	ENST00000272746.9_3	ENST00000442996.1_1	chr2	175425497	175547627	WIPF1	-	protein_coding	chr2	175411868	175639555	AC010894.2	+	lncRNA	123345	opposite	12912_ID	chr2	175425498	175547627	122130	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
214	ENST00000276943.2_1	ENST00000262244.6_4	chr9	27524311	27526496	IFNK	+	protein_coding	chr9	27325206	27529812	MOB3B	-	protein_coding	2185	opposite	7331_ID	chr9	27524312	27526496	2185	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
230	ENST00000280684.3_1	ENST00000542998.5_1	chr12	4918341	4922578	KCNA6	+	protein_coding	chr12	4872509	4960169	GALNT8	+	protein_coding	4237	same	7401_ID	chr12	4918342	4922578	4237	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
234	ENST00000282276.8_2	ENST00000409845.1_1	chr2	198570092	198573119	MARS2	+	protein_coding	chr2	198557829	198639547	AC011997.1	+	lncRNA	3027	same	7922_ID	chr2	198570093	198573119	3027	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
237	ENST00000283225.2_3	ENST00000662798.1_3	chr1	247901916	247902861	OR14K1	+	protein_coding	chr1	247803065	247924557	AL390860.1	+	lncRNA	945	same	9359_ID	chr1	247901917	247902861	945	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
242	ENST00000284311.5_2	ENST00000512905.6_5	chr3	98250821	98253525	GPR15	+	protein_coding	chr3	98239976	98304342	AC021660.3	-	nonsense_mediated_decay	2704	opposite	7156_ID	chr3	98250822	98253525	2704	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
246	ENST00000287042.5_2	ENST00000517832.1_3	chr8	99439185	99445081	KCNS2	+	protein_coding	chr8	99413630	99539154	STK3	-	processed_transcript	5896	opposite	7430_ID	chr8	99439186	99445081	5896	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
250	ENST00000288014.7_2	ENST00000553985.1_1	chr14	24025479	24029480	THTPA	+	protein_coding	chr14	23982025	24029987	ZFHX2-AS1	+	lncRNA	4284	same	12688_ID	chr14	24025480	24029480	4001	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
251	ENST00000288022.2_4	ENST00000562595.5_7	chr16	69360815	69364491	PDF	-	protein_coding	chr16	69355893	69373396	COG8	-	protein_coding	3676	same	9528_ID	chr16	69360816	69364491	3676	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
261	ENST00000290310.4_2	ENST00000440403.2_4	chr21	35736304	35743680	KCNE2	+	protein_coding	chr21	35725397	35747663	AP000320.1	-	lncRNA	7376	opposite	7409_ID	chr21	35736305	35743680	7376	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
264	ENST00000290552.8_2	ENST00000558730.2_3	chr16	55358114	55364668	IRX6	+	protein_coding	chr16	55293880	55367500	AC109462.1	-	lncRNA	6554	opposite	7369_ID	chr16	55358115	55364668	6554	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
265	ENST00000290953.3_4	ENST00000656196.1_1	chr16	67516473	67517450	AGRP	-	protein_coding	chr16	67515216	67539880	AC009061.2	+	lncRNA	977	opposite	4418_ID	chr16	67516474	67517450	977	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
267	ENST00000291764.3_3	ENST00000601627.1_2	chr19	41381343	41388657	CYP2A7	-	protein_coding	chr19	41307201	41404187	AC008537.1	+	nonsense_mediated_decay	7314	opposite	6754_ID	chr19	41381344	41388657	7314	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
273	ENST00000293379.9_4	ENST00000550474.5_1	chr12	54789044	54813050	ITGA5	-	protein_coding	chr12	54747444	54891472	AC079313.2	+	lncRNA	24006	opposite	7375_ID	chr12	54789045	54813050	24006	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
292	ENST00000296140.4_4	ENST00000357422.2_3	chr3	46243201	46249804	CCR1	-	protein_coding	chr3	46205095	46308106	CCR3	+	protein_coding	6603	opposite	6588_ID	chr3	46243202	46249804	6603	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
299	ENST00000297203.3_4	ENST00000333190.5_2	chr7	88423419	88425051	TEX47	-	protein_coding	chr7	88389013	88967842	ZNF804B	+	protein_coding	1632	opposite	12659_ID	chr7	88423420	88425051	1632	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
310	ENST00000299454.4_1	ENST00000637205.2_4	chr11	6866882	6867936	OR10A5	+	protein_coding	chr11	6843172	6948109	AC087280.2	-	lncRNA	1054	opposite	9344_ID	chr11	6866883	6867936	1054	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
311	ENST00000299459.2_2	ENST00000637205.2_4	chr11	6912720	6913830	OR2D2	-	protein_coding	chr11	6843172	6948109	AC087280.2	-	lncRNA	1110	same	9383_ID	chr11	6912721	6913830	1110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
313	ENST00000299766.5_4	ENST00000658928.1_1	chr18	58038294	58040008	MC4R	-	protein_coding	chr18	57996422	58207264	AC091576.1	+	lncRNA	1714	opposite	7927_ID	chr18	58038295	58040008	1714	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
322	ENST00000301141.10_4	ENST00000601627.1_2	chr19	41349445	41356352	CYP2A6	-	protein_coding	chr19	41307201	41404187	AC008537.1	+	nonsense_mediated_decay	6907	opposite	6753_ID	chr19	41349446	41356352	6907	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
324	ENST00000301522.3_4	ENST00000589765.1_3	chr19	12907636	12912614	PRDX2	-	protein_coding	chr19	12884972	12983554	HOOK2	-	processed_transcript	4981	same	9624_ID	chr19	12907637	12912614	4978	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
332	ENST00000302472.4_2	ENST00000636863.1_3	chr5	40680016	40693837	PTGER4	+	protein_coding	chr5	40512434	40756010	TTC33	-	protein_coding	13821	opposite	9674_ID	chr5	40680017	40693837	13821	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
336	ENST00000302754.6_2	ENST00000589765.1_3	chr19	12902299	12904129	JUNB	+	protein_coding	chr19	12884972	12983554	HOOK2	-	processed_transcript	1830	opposite	7392_ID	chr19	12902300	12904129	1830	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
340	ENST00000303277.6_3	ENST00000458173.4_4	chr4	1717678	1723085	TMEM129	-	protein_coding	chr4	1714617	1729946	TACC3	+	protein_coding	5407	opposite	12714_ID	chr4	1717679	1723085	5407	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
344	ENST00000304045.6_3	ENST00000594512.1_1	chr19	51479737	51487355	KLK7	-	nonsense_mediated_decay	chr19	51471465	51515385	AC011483.1	+	lncRNA	7632	opposite	7456_ID	chr19	51479738	51487355	7618	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
347	ENST00000304298.4_2	ENST00000527950.5_5	chr11	111783457	111784817	HSPB2	+	protein_coding	chr11	111779346	111794446	CRYAB	-	protein_coding	1360	opposite	7311_ID	chr11	111783458	111784817	1360	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
349	ENST00000304374.4_2	ENST00000503803.5_3	chr4	9783257	9785633	DRD5	+	protein_coding	chr4	9781430	9889266	SLC2A9	-	processed_transcript	2376	opposite	6847_ID	chr4	9783258	9785633	2376	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
352	ENST00000304646.2_1	ENST00000576468.1_2	chr16	3254246	3255188	OR1F1	+	protein_coding	chr16	3238211	3274779	AJ003147.2	+	lncRNA	942	same	9363_ID	chr16	3254247	3255188	942	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
358	ENST00000305879.8_4	ENST00000550474.5_1	chr12	54849740	54867386	GTSF1	-	protein_coding	chr12	54747444	54891472	AC079313.2	+	lncRNA	17653	opposite	7200_ID	chr12	54849741	54867386	17646	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
365	ENST00000306735.10_2	ENST00000569722.5_2	chr18	77794433	77810651	RBFA	+	protein_coding	chr18	77794345	77854968	AC090360.1	+	nonsense_mediated_decay	16263	same	9710_ID	chr18	77794434	77810651	16218	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
373	ENST00000308128.9_4	ENST00000581856.5_3	chr18	28956739	28994872	DSG4	+	protein_coding	chr18	28923330	29006890	DSG1-AS1	-	lncRNA	38136	opposite	6853_ID	chr18	28956740	28994872	38133	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
384	ENST00000310085.6_3	ENST00000500031.1_3	chr4	7042575	7044728	CCDC96	-	protein_coding	chr4	7032280	7047958	AC097382.2	-	lncRNA	2153	same	6579_ID	chr4	7042576	7044728	2153	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
385	ENST00000310128.9_5	ENST00000533008.1_1	chr11	74165885	74178594	KCNE3	-	protein_coding	chr11	74108697	74196787	AP001372.1	+	lncRNA	12889	opposite	7410_ID	chr11	74165886	74178594	12709	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
409	ENST00000312438.8_5	ENST00000622583.4_1	chr11	67131638	67141069	CLCF1	-	protein_coding	chr11	67085341	67158905	RAD9A	+	processed_transcript	10010	opposite	6658_ID	chr11	67131639	67141069	9431	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
415	ENST00000313071.7_2	ENST00000675861.1_1	chr14	29235992	29239483	FOXG1	+	protein_coding	chr14	29234845	29261490	AL049777.1	+	lncRNA	3491	same	7059_ID	chr14	29235993	29239483	3491	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
427	ENST00000314412.7_3	ENST00000623196.1_1	chr9	139924625	139926540	FUT7	-	protein_coding	chr9	139921915	139932409	C9orf139	+	lncRNA	1915	opposite	7090_ID	chr9	139924626	139926540	1915	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
433	ENST00000316048.2_4	ENST00000527783.1_1	chr12	14957583	14967116	SMCO3	-	protein_coding	chr12	14956610	15059520	C12orf60	+	processed_transcript	9533	opposite	12124_ID	chr12	14957584	14967116	9533	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
440	ENST00000317103.5_4	ENST00000659022.1_1	chrX	8137984	8139308	VCX2	-	protein_coding	chrX	7896483	8342427	AC079142.1	+	lncRNA	1324	opposite	12890_ID	chrX	8137985	8139308	1324	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
448	ENST00000317834.4_1	ENST00000637205.2_4	chr11	6942204	6943274	OR2D3	+	protein_coding	chr11	6843172	6948109	AC087280.2	-	lncRNA	1070	opposite	9384_ID	chr11	6942205	6943274	1070	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
452	ENST00000319285.5_4	ENST00000566625.2_2	chr16	30434935	30441351	DCTPP1	-	protein_coding	chr16	30418949	30442429	ZNF771	+	protein_coding	6416	opposite	6775_ID	chr16	30434936	30441351	6416	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
476	ENST00000322101.4_3	ENST00000477339.5_1	chr11	4868718	4870468	OR51S1	-	protein_coding	chr11	4726156	5011060	MMP26	+	processed_transcript	1750	opposite	9434_ID	chr11	4868719	4870468	1750	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
477	ENST00000322110.8_4	ENST00000477339.5_1	chr11	4842550	4843686	OR51F2	+	protein_coding	chr11	4726156	5011060	MMP26	+	processed_transcript	1136	same	9415_ID	chr11	4842551	4843686	1136	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
479	ENST00000322301.5_5	ENST00000601611.6_4	chr19	14937052	14945997	OR7A5	-	protein_coding	chr19	14900071	14946188	OR7C1	-	processed_transcript	8945	same	9473_ID	chr19	14937053	14945997	8945	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
481	ENST00000322428.10_2	ENST00000533184.1_3	chr8	145159363	145162514	MAF1	+	protein_coding	chr8	145158019	145163027	SHARPIN	-	processed_transcript	3151	opposite	7903_ID	chr8	145159364	145162514	3151	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
513	ENST00000326306.5_2	ENST00000655387.1_3	chr3	39371199	39375171	CCR8	+	protein_coding	chr3	39334046	39425791	AC104850.2	-	lncRNA	3972	opposite	6590_ID	chr3	39371200	39375171	3972	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
523	ENST00000327335.4_3	ENST00000556750.5_3	chr12	55862983	55863922	OR6C70	-	protein_coding	chr12	55828538	55979255	AC122685.1	-	lncRNA	939	same	9469_ID	chr12	55862984	55863922	939	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
536	ENST00000328880.6_3	ENST00000543611.1_1	chr12	123185839	123187904	HCAR2	-	protein_coding	chr12	123171671	123200526	AC026333.3	+	lncRNA	2065	opposite	7219_ID	chr12	123185840	123187904	2065	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
540	ENST00000329293.4_2	ENST00000530201.2_4	chr11	7506736	7532608	OLFML1	+	protein_coding	chr11	7440056	7534703	AC107884.1	-	lncRNA	25990	opposite	9332_ID	chr11	7506737	7532608	25872	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
559	ENST00000332281.6_4	ENST00000563261.6_2	chr16	88744095	88752915	SNAI3	-	protein_coding	chr16	88729705	88753686	SNAI3-AS1	+	lncRNA	8820	opposite	12141_ID	chr16	88744096	88752915	8820	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
563	ENST00000332503.6_4	ENST00000465846.6_1	chr17	46652868	46655712	HOXB4	-	protein_coding	chr17	46626991	46679694	HOXB-AS3	+	lncRNA	2844	opposite	7264_ID	chr17	46652869	46655712	2844	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
580	ENST00000333796.3_2	ENST00000434078.3_2	chr8	11994676	11996586	USP17L2	-	protein_coding	chr8	11973290	12035059	FAM66D	+	lncRNA	1910	opposite	12865_ID	chr8	11994677	11996586	1910	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
584	ENST00000333957.8_4	ENST00000661495.1_1	chr12	22601516	22697480	C2CD5	-	protein_coding	chr12	22562170	22771802	AC053513.1	+	lncRNA	95964	opposite	6506_ID	chr12	22601517	22697480	95964	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
605	ENST00000338010.9_5	ENST00000550474.5_1	chr12	54762923	54785082	ZNF385A	-	protein_coding	chr12	54747444	54891472	AC079313.2	+	lncRNA	22166	opposite	13041_ID	chr12	54762924	54785082	22159	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
609	ENST00000338146.7_3	ENST00000648304.1_3	chr12	56862361	56873492	SPRYD4	+	protein_coding	chr12	56843483	56881954	AC097104.1	-	nonsense_mediated_decay	11131	opposite	12538_ID	chr12	56862362	56873492	11131	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
617	ENST00000339235.4_4	ENST00000539198.5_1	chr12	1675158	1703747	FBXL14	-	protein_coding	chr12	1639056	1748875	WNT5B	+	protein_coding	28589	opposite	7007_ID	chr12	1675159	1703747	28589	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
623	ENST00000339673.11_6	ENST00000506480.5_3	chr4	88571431	88585509	DMP1	+	protein_coding	chr4	88489186	88653522	AC093895.1	-	lncRNA	14082	opposite	6821_ID	chr4	88571432	88585509	14078	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
628	ENST00000340385.6_2	ENST00000669220.1_3	chr1	173446473	173457954	PRDX6	+	protein_coding	chr1	173386931	173458546	PRDX6-AS1	-	lncRNA	11486	opposite	9625_ID	chr1	173446474	173457954	11481	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
631	ENST00000340487.5_2	ENST00000660873.1_3	chr6	28092386	28097860	ZSCAN16	+	protein_coding	chr6	27982899	28104599	ZSCAN16-AS1	-	lncRNA	5474	opposite	13085_ID	chr6	28092387	28097860	5474	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
638	ENST00000341415.3_4	ENST00000597989.1_1	chr19	46623323	46627945	IGFL3	-	protein_coding	chr19	46604379	46699475	AC007785.1	+	lncRNA	4622	opposite	7341_ID	chr19	46623324	46627945	4622	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
645	ENST00000342623.5_3	ENST00000651827.1_6	chr1	248844622	248845629	OR14I1	-	protein_coding	chr1	248844549	248862206	CR589904.2	-	protein_coding	1007	same	9358_ID	chr1	248844623	248845629	1007	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
663	ENST00000346199.3_3	ENST00000467603.1_3	chr20	36149607	36152092	NNAT	+	protein_coding	chr20	36130815	36156264	BLCAP	-	processed_transcript	2485	opposite	9276_ID	chr20	36149608	36152092	2485	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
665	ENST00000347264.2	ENST00000457683.1_1	chr1	119874019	119874148	RNU1-75P	-	snRNA	chr1	119870874	119898805	LINC01780	+	lncRNA	129	opposite	10600_ID	chr1	119874020	119874148	129	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
674	ENST00000354373.2_1	ENST00000461286.3	chr22	29834571	29838444	RFPL1	+	protein_coding	chr22	29832817	29874164	RFPL1S	-	antisense	3873	opposite	9736_ID	chr22	29834572	29838444	3873	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
676	ENST00000354429.6_4	ENST00000577138.1_3	chr17	7155371	7163250	ELP5	+	protein_coding	chr17	7150147	7165408	AC003688.1	-	nonsense_mediated_decay	8525	opposite	6902_ID	chr17	7155372	7163250	7879	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
685	ENST00000354924.2_2	ENST00000508616.1_1	chr3	98072697	98073663	OR5K4	+	protein_coding	chr3	97952494	98176742	AC117473.1	+	lncRNA	966	same	9460_ID	chr3	98072698	98073663	966	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
689	ENST00000355612.7_4	ENST00000418393.1_1	chr17	39114668	39123200	KRT39	-	protein_coding	chr17	39077681	39132178	AC004231.1	+	lncRNA	8532	opposite	7470_ID	chr17	39114669	39123200	8532	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
695	ENST00000356476.3_3	ENST00000635641.1_6	chr6	26197011	26197514	H3C4	-	protein_coding	chr6	26195822	26199521	AL031777.2	-	nonsense_mediated_decay	503	same	7212_ID	chr6	26197012	26197514	503	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	3
702	ENST00000357585.4_3	ENST00000580671.1_1	chr17	71161148	71172772	SSTR2	+	protein_coding	chr17	71161115	71192732	AC097641.1	+	lncRNA	11624	same	12551_ID	chr17	71161149	71172772	11624	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
713	ENST00000358758.12_5	ENST00000569039.5_3	chr16	29823513	29827202	PRRT2	+	protein_coding	chr16	29820249	29831687	AC009133.1	-	lncRNA	4511	opposite	9656_ID	chr16	29823514	29827202	3689	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
728	ENST00000360311.5_2	ENST00000479173.1_3	chr3	32023241	32033215	ZNF860	+	protein_coding	chr3	31917924	32119072	OSBPL10	-	processed_transcript	9974	opposite	13079_ID	chr3	32023242	32033215	9974	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
740	ENST00000361200.7_2	ENST00000632571.1_3	chr1	167063311	167098402	STYXL2	+	protein_coding	chr1	167032866	167135716	GPA33	-	protein_coding	35091	opposite	12575_ID	chr1	167063312	167098402	35091	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
761	ENST00000362147.1	ENST00000624914.3_1	chr20	61151509	61151586	MIR1-1	+	miRNA	chr20	61147659	61167971	MIR1-1HG	+	lncRNA	77	same	7953_ID	chr20	61151510	61151586	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
816	ENST00000362307.1	ENST00000654736.1_3	chr9	21512113	21512184	MIR31	-	miRNA	chr9	21453800	21559899	MIR31HG	-	lncRNA	71	same	8232_ID	chr9	21512114	21512184	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
818	ENST00000362317.1	ENST00000412403.1_1	chr17	29902429	29902540	MIR365B	+	miRNA	chr17	29898160	29902678	AC003101.1	+	lncRNA	111	same	8369_ID	chr17	29902430	29902540	111	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
827	ENST00000362378.1	ENST00000548143.1_3	chr22	31875368	31875475	RNU6-28P	-	snRNA	chr22	31822726	31924726	DRG1	+	nonsense_mediated_decay	107	opposite	11132_ID	chr22	31875369	31875475	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
854	ENST00000362618.1	ENST00000655926.1_1	chr3	170712658	170712822	RNU1-70P	-	snRNA	chr3	170626645	170772762	AC061708.1	+	lncRNA	164	opposite	10596_ID	chr3	170712659	170712822	164	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
857	ENST00000362636.1	ENST00000670743.1_4	chr12	96186306	96186413	RNU6-247P	-	snRNA	chr12	96185510	96252604	AC090001.1	-	lncRNA	107	same	11096_ID	chr12	96186307	96186413	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
865	ENST00000362698.1	ENST00000558873.1_3	chr15	65588388	65588504	RNU5A-1	+	snRNA	chr15	65558914	65592956	PARP16	-	processed_transcript	116	opposite	10734_ID	chr15	65588389	65588504	116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
875	ENST00000362735.1	ENST00000648254.1_4	chr13	52974138	52974234	RNY4P24	+	misc_RNA	chr13	52951333	52990508	THSD1	-	protein_coding	96	opposite	11856_ID	chr13	52974139	52974234	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
881	ENST00000362773.1	ENST00000650150.1_3	chr5	90566543	90566684	RNU4-90P	+	snRNA	chr5	90447027	90610219	LUCAT1	-	lncRNA	141	opposite	10715_ID	chr5	90566544	90566684	141	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
892	ENST00000362830.1	ENST00000393085.4_4	chr7	135645450	135645557	RNU6-223P	+	snRNA	chr7	135611507	135662107	MTPN	-	protein_coding	107	opposite	11083_ID	chr7	135645451	135645557	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
905	ENST00000362915.1	ENST00000532004.5_1	chr11	811680	811814	SNORA52	+	snoRNA	chr11	809964	812880	RPLP2	+	processed_transcript	134	same	12180_ID	chr11	811681	811814	134	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
915	ENST00000362961.1	ENST00000643167.1_1	chr1	55842198	55842525	RN7SKP291	-	misc_RNA	chr1	55794960	56298241	AL603840.1	+	lncRNA	327	opposite	9883_ID	chr1	55842199	55842525	327	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
921	ENST00000362995.1	ENST00000406644.7_2	chr22	41773180	41773287	RNU6-495P	-	snRNA	chr22	41763336	41795328	TEF	+	protein_coding	107	opposite	11281_ID	chr22	41773181	41773287	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
954	ENST00000363225.1	ENST00000560783.1_3	chr15	101100890	101100997	RNU6-181P	-	snRNA	chr15	101099573	101114046	LINS1	-	nonsense_mediated_decay	107	same	11055_ID	chr15	101100891	101100997	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
957	ENST00000363231.1	ENST00000606382.1_3	chr2	59874755	59874858	RNU6-508P	+	snRNA	chr2	59445814	60327335	AC007100.1	-	lncRNA	103	opposite	11292_ID	chr2	59874756	59874858	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
962	ENST00000363245.1	ENST00000613478.2_2	chr17	36888054	36888173	RNA5SP440	-	rRNA	chr17	36886593	36891858	CISD3	+	protein_coding	119	opposite	10522_ID	chr17	36888055	36888173	119	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
965	ENST00000363281.1	ENST00000521199.1_3	chr8	92607192	92607469	RN7SKP231	+	misc_RNA	chr8	92555151	92919847	AC103409.1	-	lncRNA	277	opposite	9837_ID	chr8	92607193	92607469	277	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
996	ENST00000363442.1	ENST00000555070.1_3	chr14	90178854	90179167	RN7SKP255	+	misc_RNA	chr14	89878655	90421003	AL137230.2	-	lncRNA	313	opposite	9857_ID	chr14	90178855	90179167	313	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1021	ENST00000363554.1	ENST00000568134.6_2	chr16	58778154	58778261	RNU6-1155P	-	snRNA	chr16	58767813	58897596	AC106793.1	+	lncRNA	107	opposite	10861_ID	chr16	58778155	58778261	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1024	ENST00000363567.1	ENST00000654786.1_1	chr17	15214661	15214768	RNU6-799P	+	snRNA	chr17	15170164	15215077	AC005703.6	+	lncRNA	107	same	11508_ID	chr17	15214662	15214768	107	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
1083	ENST00000363875.1	ENST00000415226.1_1	chr2	237119015	237119191	RNU1-31P	-	snRNA	chr2	237076089	237203570	AC019068.1	+	lncRNA	176	opposite	10576_ID	chr2	237119016	237119191	176	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1095	ENST00000363937.1	ENST00000650395.1_3	chr2	60611739	60611898	RNU1-32P	+	snRNA	chr2	60586228	60666963	MIR4432HG	-	lncRNA	159	opposite	10579_ID	chr2	60611740	60611898	159	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1100	ENST00000363948.1	ENST00000554725.1_1	chr14	57291703	57291810	RNU6-1204P	+	snRNA	chr14	57279988	57618895	OTX2-AS1	+	lncRNA	107	same	10908_ID	chr14	57291704	57291810	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1132	ENST00000364116.1	ENST00000648949.1_1	chr8	48043403	48043510	RNU6-819P	-	snRNA	chr8	48040884	48044251	AC120036.5	+	lncRNA	107	opposite	11528_ID	chr8	48043404	48043510	107	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
1138	ENST00000364157.1	ENST00000555070.1_3	chr14	90088261	90088551	RN7SKP107	+	misc_RNA	chr14	89878655	90421003	AL137230.2	-	lncRNA	290	opposite	9763_ID	chr14	90088262	90088551	290	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1156	ENST00000364294.1	ENST00000570884.1_1	chr16	68569417	68569561	RNU4-36P	+	snRNA	chr16	68564186	68592417	ZFP90	+	processed_transcript	144	same	10679_ID	chr16	68569418	68569561	144	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1194	ENST00000364472.1	ENST00000355897.10_2	chr3	169775088	169775217	RNU4-38P	+	snRNA	chr3	169755782	169803180	GPR160	+	protein_coding	129	same	10680_ID	chr3	169775089	169775217	129	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1204	ENST00000364525.1	ENST00000634305.1_1	chr14	37063043	37063352	RN7SKP257	-	misc_RNA	chr14	36789958	37125368	AL132857.1	+	lncRNA	309	opposite	9858_ID	chr14	37063044	37063352	309	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1216	ENST00000364587.1	ENST00000415255.2_4	chr1	40033045	40033180	SNORA55	-	snoRNA	chr1	40030723	40039532	PABPC4-AS1	+	lncRNA	135	opposite	12183_ID	chr1	40033046	40033180	135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1219	ENST00000364604.1	ENST00000646143.2_4	chr5	161904896	161904999	RNU6-164P	+	snRNA	chr5	161851047	161978265	AC113414.1	-	lncRNA	103	opposite	11042_ID	chr5	161904897	161904999	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1230	ENST00000364675.1	ENST00000333083.11_3	chr3	20038294	20038417	RNU4-85P	+	snRNA	chr3	20021452	20053759	PP2D1	-	nonsense_mediated_decay	123	opposite	10710_ID	chr3	20038295	20038417	123	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1246	ENST00000364739.1	ENST00000648702.1_3	chr1	19837086	19837227	RNU4-28P	+	snRNA	chr1	19810896	19953124	MICOS10	+	protein_coding	141	same	10671_ID	chr1	19837087	19837227	141	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1252	ENST00000364770.1	ENST00000522173.1_1	chr4	97269888	97270189	RN7SKP28	-	misc_RNA	chr4	97231882	97740015	LINC02267	+	lncRNA	301	opposite	9874_ID	chr4	97269889	97270189	301	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1263	ENST00000364814.1	ENST00000622583.4_1	chr11	67129884	67130179	RN7SKP239	+	misc_RNA	chr11	67085341	67158905	RAD9A	+	processed_transcript	295	same	9846_ID	chr11	67129885	67130179	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1277	ENST00000364884.1	ENST00000649802.1_1	chr6	31804852	31804919	SNORD52	+	snoRNA	chr6	31796610	31807496	AL671762.1	+	lncRNA	67	same	12417_ID	chr6	31804853	31804919	67	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1286	ENST00000364936.1	ENST00000450072.5_2	chr2	98281053	98281194	RNU4-8P	-	snRNA	chr2	98280679	98292184	C2orf92	+	processed_transcript	141	opposite	10714_ID	chr2	98281054	98281194	141	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1288	ENST00000364945.1	ENST00000520255.5_2	chr8	9228599	9228705	RNU6-526P	-	snRNA	chr8	9107113	9271224	AC022784.1	+	lncRNA	106	opposite	11310_ID	chr8	9228600	9228705	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1293	ENST00000364953.1	ENST00000649802.1_1	chr6	31803039	31803103	SNORD48	+	snoRNA	chr6	31796610	31807496	AL671762.1	+	lncRNA	64	same	12412_ID	chr6	31803040	31803103	64	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1360	ENST00000365390.1	ENST00000246069.12_2	chr20	17556850	17557155	RN7SKP69	-	misc_RNA	chr20	17550719	17590564	DSTN	+	protein_coding	305	opposite	9912_ID	chr20	17556851	17557155	305	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1414	ENST00000366485.1_3	ENST00000662798.1_3	chr1	247886400	247887345	OR14A2	-	protein_coding	chr1	247803065	247924557	AL390860.1	+	lncRNA	1087	opposite	9357_ID	chr1	247886401	247887345	945	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1418	ENST00000366758.7_5	ENST00000366760.5_3	chr1	227918889	227923112	JMJD4	-	protein_coding	chr1	227916357	227968927	SNAP47	+	protein_coding	4987	opposite	7390_ID	chr1	227918890	227923112	4223	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1420	ENST00000366834.2_3	ENST00000486697.2_8	chr6	167568734	167571468	GPR31	-	protein_coding	chr6	167562967	167585765	TCP10L2	+	protein_coding	2734	opposite	7163_ID	chr6	167568735	167571468	2734	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1428	ENST00000367536.5_3	ENST00000495321.1_1	chr1	183524697	183560011	NCF2	-	protein_coding	chr1	183519969	183567381	SMG7	+	processed_transcript	35315	opposite	9239_ID	chr1	183524698	183560011	35314	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1435	ENST00000368090.5_4	ENST00000639408.1_3	chr1	159994742	160001780	PIGM	-	protein_coding	chr1	159968440	160039926	KCNJ10	-	protein_coding	7038	same	9554_ID	chr1	159994743	160001780	7038	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1452	ENST00000369459.6_2	ENST00000476116.1_3	chrX	154299773	154351347	BRCC3	+	protein_coding	chrX	154293437	154376212	MTCP1	-	processed_transcript	51658	opposite	6431_ID	chrX	154299774	154351347	51574	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1461	ENST00000370341.3_3	ENST00000607802.1_1	chr20	61665568	61668380	LINC00029	-	lncRNA	chr20	61640734	61716423	LINC01749	+	lncRNA	2812	opposite	7527_ID	chr20	61665569	61668380	2812	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1488	ENST00000371891.8_3	ENST00000444042.2_3	chr1	47603112	47615399	CYP4A22	+	protein_coding	chr1	47562324	47644943	CYP4A22-AS1	-	lncRNA	12301	opposite	6757_ID	chr1	47603113	47615399	12287	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1492	ENST00000372321.5_2	ENST00000671459.1_3	chr10	81463034	81474437	NUTM2B	+	protein_coding	chr10	81421149	81565842	NUTM2B-AS1	-	lncRNA	11455	opposite	9319_ID	chr10	81463035	81474437	11403	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1494	ENST00000372478.4_4	ENST00000372486.5_1	chr9	132374503	132383055	C9orf50	-	protein_coding	chr9	132371162	132398209	NTMT1	+	protein_coding	8552	opposite	6525_ID	chr9	132374504	132383055	8552	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1500	ENST00000372945.8_4	ENST00000440197.2_1	chr10	75008606	75012402	MRPS16	-	protein_coding	chr10	75007117	75036742	DNAJC9-AS1	+	lncRNA	3851	opposite	9169_ID	chr10	75008607	75012402	3796	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1516	ENST00000374266.7_3	ENST00000448923.2_3	chr1	26496398	26497364	ZNF593	+	protein_coding	chr1	26496006	26498312	AL391650.1	-	protein_coding	966	opposite	13058_ID	chr1	26496399	26497364	966	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
1517	ENST00000374293.5_2	ENST00000374294.3_1	chr9	114423884	114432506	GNG10	+	protein_coding	chr9	114393665	114432509	DNAJC25-GNG10	+	protein_coding	8622	same	7140_ID	chr9	114423885	114432506	8622	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	3
1518	ENST00000374312.5_4	ENST00000503031.1	chr10	47083456	47088320	NPY4R	+	protein_coding	chr10	47011752	47174018	LINC00842	-	lincRNA	4864	opposite	9296_ID	chr10	47083457	47088320	4864	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1555	ENST00000376945.4_4	ENST00000665450.1_1	chr13	95361875	95364799	SOX21	-	protein_coding	chr13	95355707	95455684	SOX21-AS1	+	lncRNA	2924	opposite	12495_ID	chr13	95361876	95364799	2924	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1558	ENST00000377175.1_2	ENST00000623334.3_1	chr6	29011989	29013017	OR2W1	-	protein_coding	chr6	29003797	29044256	AL662791.2	+	lncRNA	1028	opposite	9389_ID	chr6	29011990	29013017	1028	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1561	ENST00000377325.2_2	ENST00000660873.1_3	chr6	28048345	28057341	ZNF165	+	protein_coding	chr6	27982899	28104599	ZSCAN16-AS1	-	lncRNA	8996	opposite	13022_ID	chr6	28048346	28057341	8996	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1565	ENST00000377710.10_4	ENST00000486776.5_3	chr20	17949660	17971765	MGME1	+	protein_coding	chr20	17937622	18039832	OVOL2	-	processed_transcript	22105	opposite	7946_ID	chr20	17949661	17971765	22105	*	+	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1577	ENST00000379071.4_4	ENST00000524085.2_1	chr8	82370487	82373814	FABP9	-	protein_coding	chr8	82351670	82434053	AC018616.1	+	lncRNA	3327	opposite	6956_ID	chr8	82370488	82373814	3327	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1581	ENST00000379483.4_3	ENST00000619407.4_1	chr13	41763969	41768705	KBTBD7	-	protein_coding	chr13	41707074	41810822	AL354696.2	+	lncRNA	4736	opposite	7398_ID	chr13	41763970	41768705	4736	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1584	ENST00000379829.2_2	ENST00000637205.2_4	chr11	6897855	6898850	OR10A4	+	protein_coding	chr11	6843172	6948109	AC087280.2	-	lncRNA	995	opposite	9343_ID	chr11	6897856	6898850	995	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1607	ENST00000380371.1_3	ENST00000477339.5_1	chr11	4976001	4976943	OR51A2	-	protein_coding	chr11	4726156	5011060	MMP26	+	processed_transcript	942	opposite	9398_ID	chr11	4976002	4976943	942	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1608	ENST00000380378.1_2	ENST00000477339.5_1	chr11	4903048	4904113	OR51T1	+	protein_coding	chr11	4726156	5011060	MMP26	+	processed_transcript	1065	same	9435_ID	chr11	4903049	4904113	1065	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1609	ENST00000380383.1_4	ENST00000477339.5_1	chr11	4790208	4791168	OR51F1	-	protein_coding	chr11	4726156	5011060	MMP26	+	processed_transcript	960	opposite	9414_ID	chr11	4790209	4791168	960	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1611	ENST00000380482.9_2	ENST00000585870.6_4	chr13	31480407	31499709	MEDAG	+	protein_coding	chr13	31456977	31506745	TEX26-AS1	-	lncRNA	19302	opposite	7940_ID	chr13	31480408	31499709	19302	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1625	ENST00000381477.8_2	ENST00000436015.6_3	chr9	5890888	5910606	MLANA	+	protein_coding	chr9	5881595	5921097	KIAA2026	-	nonsense_mediated_decay	19718	opposite	9143_ID	chr9	5890889	5910606	19718	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1635	ENST00000382540.5_3	ENST00000555300.1_1	chr14	25100176	25103473	GZMB	-	protein_coding	chr14	25065190	25126980	AL136018.1	+	lncRNA	3314	opposite	7205_ID	chr14	25100177	25103473	3297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1637	ENST00000382548.4_3	ENST00000555300.1_1	chr14	25075690	25078905	GZMH	-	protein_coding	chr14	25065190	25126980	AL136018.1	+	lncRNA	3220	opposite	7206_ID	chr14	25075691	25078905	3215	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1640	ENST00000382951.4_4	ENST00000472458.5_1	chr14	21500976	21502966	RNASE13	-	protein_coding	chr14	21498429	21504433	TPPP2	+	protein_coding	1990	opposite	10531_ID	chr14	21500977	21502966	1990	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1642	ENST00000383695.1_2	ENST00000508616.1_1	chr3	98109509	98110475	OR5K3	+	protein_coding	chr3	97952494	98176742	AC117473.1	+	lncRNA	966	same	9459_ID	chr3	98109510	98110475	966	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1649	ENST00000383873.1	ENST00000310380.11_4	chr3	194935515	194935622	RNU6-25P	+	snRNA	chr3	194789012	194991888	XXYLT1	-	protein_coding	107	opposite	11109_ID	chr3	194935516	194935622	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1669	ENST00000383902.1	ENST00000502400.5_4	chr4	68295308	68295472	RNU1-63P	-	snRNA	chr4	68283022	68333969	AC104806.2	-	lncRNA	164	same	10593_ID	chr4	68295309	68295472	164	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1690	ENST00000383967.1	ENST00000445753.1	chr1	143687358	143687519	RNVU1-3	+	snRNA	chr1	143647638	143744410	RP6-206I17.1	-	lincRNA	161	opposite	11827_ID	chr1	143687359	143687519	161	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1702	ENST00000383985.1	ENST00000491912.1_1	chr3	98523821	98523928	RNU6-26P	-	snRNA	chr3	98510702	98539841	ST3GAL6	+	processed_transcript	107	opposite	11118_ID	chr3	98523822	98523928	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1723	ENST00000384040.1	ENST00000629895.1_5	chr1	28002113	28002220	RNU6-949P	-	snRNA	chr1	27996000	28029574	AL445490.1	+	lncRNA	107	opposite	11630_ID	chr1	28002114	28002220	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1725	ENST00000384045.1	ENST00000504610.2_1	chr11	112223278	112223385	RNU6-44P	-	snRNA	chr11	112141471	112233257	LINC02762	+	lncRNA	107	opposite	11255_ID	chr11	112223279	112223385	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1790	ENST00000384238.1	ENST00000442996.1_1	chr2	175422693	175422800	RNU6-5P	-	snRNA	chr2	175411868	175639555	AC010894.2	+	lncRNA	107	opposite	11368_ID	chr2	175422694	175422800	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1829	ENST00000384367.1	ENST00000629895.1_5	chr1	28020241	28020346	RNU6-424P	+	snRNA	chr1	27996000	28029574	AL445490.1	+	lncRNA	105	same	11226_ID	chr1	28020242	28020346	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1866	ENST00000384477.1	ENST00000437181.1_1	chr9	84340157	84340264	RNU6-1035P	-	snRNA	chr9	84304627	84391815	AL591368.1	+	lncRNA	107	opposite	10783_ID	chr9	84340158	84340264	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1872	ENST00000384499.1	ENST00000445753.1	chr1	143673128	143673290	RNU1-13P	-	snRNA	chr1	143647638	143744410	RP6-206I17.1	-	lincRNA	162	same	10565_ID	chr1	143673129	143673290	162	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1884	ENST00000384526.1	ENST00000653200.1_1	chr1	43457108	43457215	RNU6-880P	+	snRNA	chr1	43424748	43462471	SLC2A1-AS1	+	lncRNA	107	same	11579_ID	chr1	43457109	43457215	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1891	ENST00000384540.1	ENST00000655697.1_1	chr2	150467181	150467288	RNU6-601P	-	snRNA	chr2	150444186	150903961	MMADHC-DT	+	lncRNA	107	opposite	11369_ID	chr2	150467182	150467288	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1916	ENST00000384598.1	ENST00000655056.1_3	chr1	37669210	37669317	RNU6-636P	+	snRNA	chr1	37620363	37784244	AL353604.1	-	lncRNA	107	opposite	11396_ID	chr1	37669211	37669317	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1918	ENST00000384601.1	ENST00000474798.1_1	chr3	98627302	98627408	RNU6-1263P	+	snRNA	chr3	98621267	98737406	AC091212.1	+	lncRNA	106	same	10957_ID	chr3	98627303	98627408	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1924	ENST00000384615.1	ENST00000367469.5_2	chr6	148599807	148599914	RNU6-1222P	+	snRNA	chr6	148593439	148761830	SASH1	+	retained_intron	107	same	10921_ID	chr6	148599808	148599914	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1941	ENST00000384659.1	ENST00000633433.1_3	chr1	17067010	17067174	RNU1-4	+	snRNA	chr1	17066432	17077084	AL021920.3	-	lncRNA	164	opposite	10584_ID	chr1	17067011	17067174	164	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
1946	ENST00000384684.1	ENST00000520255.5_2	chr8	9144981	9145088	RNU6-1151P	-	snRNA	chr8	9107113	9271224	AC022784.1	+	lncRNA	107	opposite	10856_ID	chr8	9144982	9145088	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1961	ENST00000384727.1	ENST00000615947.1_3	chr13	40800963	40801069	RNY3P9	+	misc_RNA	chr13	40653242	40847646	LINC00598	-	lncRNA	106	opposite	11844_ID	chr13	40800964	40801069	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1965	ENST00000384730.1	ENST00000525483.5_1	chr6	117778896	117779001	RNU6-253P	-	snRNA	chr6	117774979	117825127	DCBLD1	+	processed_transcript	105	opposite	11102_ID	chr6	117778897	117779001	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
1976	ENST00000384765.1	ENST00000454887.1_5	chr3	12881810	12881949	SNORA7A	-	snoRNA	chr3	12868944	12913415	CAND2	+	protein_coding	139	opposite	12212_ID	chr3	12881811	12881949	139	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
1980	ENST00000384782.1	ENST00000633763.1_1	chr1	16993279	16993443	RNU1-3	-	snRNA	chr1	16983373	16994019	AL137798.2	+	lncRNA	164	opposite	10575_ID	chr1	16993280	16993443	164	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
1994	ENST00000384820.1	ENST00000523148.5_3	chr10	102734741	102734841	MIR608	+	miRNA	chr10	102729214	102746953	MRPL43	-	protein_coding	100	opposite	9009_ID	chr10	102734742	102734841	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
2000	ENST00000384828.1	ENST00000513982.5_1	chr4	166307393	166307489	MIR578	+	miRNA	chr4	166282345	166403474	CPE	+	protein_coding	96	same	8980_ID	chr4	166307394	166307489	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2022	ENST00000384852.1	ENST00000519935.1_1	chr7	27209098	27209183	MIR196B	-	miRNA	chr7	27208517	27211534	HOXA10-AS	+	lncRNA	85	opposite	8156_ID	chr7	27209099	27209183	85	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
2057	ENST00000384896.1	ENST00000659022.1_1	chrX	8095005	8095102	MIR651	+	miRNA	chrX	7896483	8342427	AC079142.1	+	lncRNA	97	same	9057_ID	chrX	8095006	8095102	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2066	ENST00000384910.1	ENST00000240499.8_2	chr4	343945	344041	MIR571	+	miRNA	chr4	331602	378657	ZNF141	+	protein_coding	96	same	8975_ID	chr4	343946	344041	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
2080	ENST00000384962.1	ENST00000671603.1_3	chr15	79502129	79502213	MIR184	+	miRNA	chr15	79434280	79576165	ANKRD34C-AS1	-	lncRNA	84	opposite	8129_ID	chr15	79502130	79502213	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2087	ENST00000384974.1	ENST00000600076.5_1	chr19	14640354	14640452	MIR639	+	miRNA	chr19	14627896	14674550	TECR	+	retained_intron	98	same	9047_ID	chr19	14640355	14640452	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2231	ENST00000385260.1	ENST00000658368.1_3	chrX	76225828	76225926	MIR325	-	miRNA	chrX	75877266	76234925	MIR325HG	-	lncRNA	98	same	8319_ID	chrX	76225829	76225926	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2232	ENST00000385261.1	ENST00000330137.12_4	chr17	57228496	57228582	MIR301A	-	miRNA	chr17	57187217	57232547	SKA2	-	protein_coding	86	same	8215_ID	chr17	57228497	57228582	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2237	ENST00000385267.1	ENST00000439461.6_4	chr19	52785049	52785146	MIR643	+	miRNA	chr19	52772839	52799299	ZNF766	+	protein_coding	97	same	9051_ID	chr19	52785050	52785146	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2254	ENST00000385293.1	ENST00000623876.2_4	chr12	57912945	57913042	MIR616	-	miRNA	chr12	57910370	57915520	DDIT3	-	protein_coding	97	same	9019_ID	chr12	57912946	57913042	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2291	ENST00000390180.1	ENST00000330137.12_4	chr17	57215118	57215233	MIR454	-	miRNA	chr17	57187217	57232547	SKA2	-	protein_coding	115	same	8615_ID	chr17	57215119	57215233	115	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2389	ENST00000390994.1	ENST00000274242.10_7	chr5	40832757	40832837	SNORD72	-	snoRNA	chr5	40825363	40835324	RPL37	-	protein_coding	80	same	12443_ID	chr5	40832758	40832837	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
2390	ENST00000390996.1	ENST00000311915.12_3	chr12	64598572	64598679	RNU6-1009P	+	snRNA	chr12	64580095	64616045	C12orf66	-	protein_coding	107	opposite	10762_ID	chr12	64598573	64598679	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2412	ENST00000391083.1	ENST00000675607.1_1	chr1	116956387	116956491	RNU6-817P	-	snRNA	chr1	116921058	116961229	ATP1A1-AS1	-	lncRNA	104	same	11526_ID	chr1	116956388	116956491	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2417	ENST00000391100.1	ENST00000519374.6_2	chr5	172447730	172447931	SNORA74B	+	snoRNA	chr5	172410773	172462448	ATP6V0E1	+	protein_coding	201	same	12210_ID	chr5	172447731	172447931	201	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
2459	ENST00000391310.1	ENST00000613990.1_3	chr14	19564784	19564891	RNU6-1239P	+	snRNA	chr14	19563121	19566680	AL929601.3	-	lncRNA	107	opposite	10935_ID	chr14	19564785	19564891	107	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
2494	ENST00000395068.9_2	ENST00000530478.5_4	chr8	145064223	145067583	GRINA	+	protein_coding	chr8	145060058	145086940	PARP10	-	protein_coding	3360	opposite	7181_ID	chr8	145064224	145067583	3360	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2509	ENST00000396806.3_3	ENST00000377154.1_3	chr6	29341199	29343068	OR12D3	-	protein_coding	chr6	29323006	29399744	OR5V1	-	protein_coding	1869	same	9352_ID	chr6	29341200	29343068	1869	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
2521	ENST00000397747.5_2	ENST00000661858.1_3	chr9	5510530	5571282	PDCD1LG2	+	protein_coding	chr9	5457476	5629748	AL162253.2	-	lncRNA	60752	opposite	9520_ID	chr9	5510531	5571282	60752	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
2530	ENST00000398559.7_6	ENST00000595925.1_3	chr3	69068977	69101484	TMF1	-	protein_coding	chr3	69063314	69105773	AC109587.1	+	lncRNA	32513	opposite	12744_ID	chr3	69068978	69101484	32507	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	3
2556	ENST00000401106.1	ENST00000663084.1_3	chr10	120765301	120765411	AL157788.1	+	miRNA	chr10	120544074	120789056	AL157388.1	-	lncRNA	110	opposite	5068_ID	chr10	120765302	120765411	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2568	ENST00000401158.1	ENST00000528033.3_1	chr8	7711018	7711113	AC130365.1	-	miRNA	chr8	7705620	7726389	SPAG11A	+	protein_coding	95	opposite	4062_ID	chr8	7711019	7711113	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2569	ENST00000401168.2	ENST00000308742.9_2	chr12	38715367	38715462	AC117372.1	-	miRNA	chr12	38710575	38723523	ALG10B	+	protein_coding	95	opposite	3922_ID	chr12	38715368	38715462	95	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
2590	ENST00000401258.1	ENST00000504595.2_2	chr5	15935290	15935369	MIR887	+	miRNA	chr5	15500288	15939902	FBXL7	+	protein_coding	79	same	9097_ID	chr5	15935291	15935369	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
2618	ENST00000401375.1	ENST00000528943.5_3	chr8	7315477	7315572	AC130360.1	+	miRNA	chr8	7300205	7320974	SPAG11B	-	protein_coding	95	opposite	4061_ID	chr8	7315478	7315572	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2621	ENST00000401641.2_4	ENST00000415434.5_1	chr2	242836187	242844702	FAM240C	-	protein_coding	chr2	242823516	243020873	LINC01237	+	lncRNA	8564	opposite	6979_ID	chr2	242836188	242844702	8515	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2632	ENST00000405858.6_5	ENST00000366167.2_1	chr7	6728063	6746578	ZNF12	-	protein_coding	chr7	6703604	6748532	AC073343.2	+	lncRNA	18515	opposite	13016_ID	chr7	6728064	6746578	18515	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2638	ENST00000407308.1_5	ENST00000451479.1_2	chr22	31048037	31063847	DUSP18	-	protein_coding	chr22	31032509	31065003	SLC35E4	+	protein_coding	15837	opposite	6860_ID	chr22	31048038	31063847	15810	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	3
2641	ENST00000408055.2	ENST00000668062.1_1	chr7	135929193	135929282	AC009784.1	-	miRNA	chr7	135777670	136122533	AC078845.1	+	lncRNA	89	opposite	996_ID	chr7	135929194	135929282	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2659	ENST00000408114.2	ENST00000671206.1_3	chr21	20076688	20076772	AP001537.1	-	miRNA	chr21	19933582	20132633	MIR548XHG	-	lncRNA	84	same	6143_ID	chr21	20076689	20076772	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2669	ENST00000408136.1	ENST00000633035.1_4	chr10	65132716	65132808	MIR1296	-	miRNA	chr10	64979636	65281610	JMJD1C	-	processed_transcript	92	same	8064_ID	chr10	65132717	65132808	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2688	ENST00000408194.1	ENST00000552377.5_5	chr12	82736374	82736489	AC083811.1	-	miRNA	chr12	82617459	82752175	CCDC59	-	protein_coding	115	same	2715_ID	chr12	82736375	82736489	115	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2710	ENST00000408272.1	ENST00000432993.1_1	chr2	221056598	221056677	AC114765.3	+	miRNA	chr2	220970376	221315499	AC019211.1	+	lncRNA	79	same	3874_ID	chr2	221056599	221056677	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2724	ENST00000408300.1	ENST00000513201.1_1	chr4	183090445	183090531	MIR1305	+	miRNA	chr4	183065139	183271469	TENM3	+	processed_transcript	86	same	8078_ID	chr4	183090446	183090531	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2733	ENST00000408333.2	ENST00000552377.5_5	chr12	82658721	82658823	AC083810.1	+	miRNA	chr12	82617459	82752175	CCDC59	-	protein_coding	102	opposite	2714_ID	chr12	82658722	82658823	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
2762	ENST00000408387.1	ENST00000508011.1_3	chr4	159921297	159921442	AC093700.1	-	miRNA	chr4	159814695	159959912	C4orf45	-	processed_transcript	145	same	3238_ID	chr4	159921298	159921442	145	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2776	ENST00000408428.1	ENST00000581006.5_1	chr17	16185327	16185402	MIR1288	+	miRNA	chr17	16120522	16252115	PIGL	+	protein_coding	75	same	8050_ID	chr17	16185328	16185402	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2780	ENST00000408444.1	ENST00000493380.5_3	chr10	14478574	14478660	MIR1265	+	miRNA	chr10	14124945	14504093	FRMD4A	-	protein_coding	86	opposite	8021_ID	chr10	14478575	14478660	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2799	ENST00000408490.1	ENST00000474089.5_4	chr20	60528601	60528718	MIR1257	-	miRNA	chr20	60528524	60573243	TAF4	-	protein_coding	117	same	8009_ID	chr20	60528602	60528718	117	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
2816	ENST00000408529.1	ENST00000663591.1_3	chr6	156267930	156268013	MIR1202	+	miRNA	chr6	156232328	156718723	AL589693.1	-	lncRNA	83	opposite	7977_ID	chr6	156267931	156268013	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
2817	ENST00000408532.1	ENST00000377073.4_2	chrX	47248047	47248176	SNORA11C	+	snoRNA	chrX	47229976	47273897	ZNF157	+	protein_coding	129	same	12153_ID	chrX	47248048	47248176	129	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2819	ENST00000408537.1	ENST00000310389.6_2	chr5	175794948	175795034	MIR1271	+	miRNA	chr5	175792489	175808912	ARL10	+	protein_coding	86	same	8028_ID	chr5	175794949	175795034	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2825	ENST00000408543.1	ENST00000669965.1_3	chr6	80536509	80536602	AL132875.1	-	miRNA	chr6	80513298	80543103	LINC01621	-	lncRNA	93	same	4817_ID	chr6	80536510	80536602	93	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2874	ENST00000408647.1	ENST00000532250.5_1	chr11	10420738	10420864	RNU6ATAC33P	-	snRNA	chr11	10339217	10500184	AMPD3	+	protein_coding	126	opposite	11676_ID	chr11	10420739	10420864	126	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2887	ENST00000408674.1	ENST00000521472.6_2	chr5	158745049	158745175	RNU4ATAC2P	+	snRNA	chr5	158737940	158760190	AC008691.1	+	lncRNA	126	same	10729_ID	chr5	158745050	158745175	126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2894	ENST00000408688.1	ENST00000522350.1_1	chr5	21734319	21734413	AC140132.1	+	miRNA	chr5	21616370	21779631	AC091946.1	+	lncRNA	94	same	4218_ID	chr5	21734320	21734413	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2929	ENST00000408779.1	ENST00000651482.1_3	chr8	127153919	127154003	AC090573.1	-	miRNA	chr8	126957344	127305033	LINC00861	-	lncRNA	84	same	2909_ID	chr8	127153920	127154003	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2939	ENST00000408807.1	ENST00000374045.5_4	chr9	117554473	117554546	AL390240.1	+	miRNA	chr9	117546931	117568319	TNFSF15	-	protein_coding	73	opposite	5551_ID	chr9	117554474	117554546	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
2953	ENST00000408836.1	ENST00000374372.1_3	chr20	34041775	34041919	MIR1289-1	-	miRNA	chr20	34021144	34042568	GDF5	-	protein_coding	144	same	8051_ID	chr20	34041776	34041919	144	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2999	ENST00000409885.1_1	ENST00000662804.1_3	chr2	171640295	171655481	ERICH2	+	protein_coding	chr2	171579373	171670180	AC007405.1	-	lncRNA	15186	opposite	6925_ID	chr2	171640296	171655481	15186	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3010	ENST00000410137.1	ENST00000662345.1_3	chr1	104066183	104066501	RN7SKP285	+	misc_RNA	chr1	103958601	104068126	AC095032.1	-	lncRNA	318	opposite	9878_ID	chr1	104066184	104066501	318	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3025	ENST00000410180.1	ENST00000627130.1_2	chr1	33802166	33802465	RN7SKP16	-	misc_RNA	chr1	33791228	33814846	AL513327.1	+	lncRNA	299	opposite	9795_ID	chr1	33802167	33802465	299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3026	ENST00000410182.1	ENST00000636095.1_1	chrX	136770049	136770153	RNU6-985P	-	snRNA	chrX	136656127	137063922	Z96074.1	+	lncRNA	104	opposite	11653_ID	chrX	136770050	136770153	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3034	ENST00000410238.1	ENST00000568150.3_2	chr16	48765614	48765712	RNU6-257P	-	snRNA	chr16	48657332	48780229	AC007611.1	+	lncRNA	98	opposite	11107_ID	chr16	48765615	48765712	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3037	ENST00000410258.1	ENST00000602719.5_4	chr16	85775226	85775306	MIR1910	-	miRNA	chr16	85723775	85784735	C16orf74	-	protein_coding	80	same	8141_ID	chr16	85775227	85775306	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3050	ENST00000410349.1	ENST00000666572.1_3	chr20	11799468	11799739	RN7SKP111	-	misc_RNA	chr20	11790636	11859077	LINC00687	-	lncRNA	271	same	9767_ID	chr20	11799469	11799739	271	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3077	ENST00000410429.1	ENST00000649950.1_1	chr15	98617895	98617992	RNU6-1186P	-	snRNA	chr15	98546318	98630613	LINC02251	+	lncRNA	97	opposite	10888_ID	chr15	98617896	98617992	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3088	ENST00000410454.1	ENST00000422488.1_1	chr7	103124654	103124986	RN7SKP86	-	misc_RNA	chr7	103085653	103154454	AC005064.1	+	lncRNA	332	opposite	9928_ID	chr7	103124655	103124986	332	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3096	ENST00000410477.1	ENST00000652797.1_1	chr15	94440140	94440256	AC103996.1	-	miRNA	chr15	94437659	94516949	LINC01580	+	lncRNA	116	opposite	3494_ID	chr15	94440141	94440256	116	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3097	ENST00000410479.1	ENST00000486975.1_2	chr3	170559883	170559961	RNY5P3	-	misc_RNA	chr3	170136655	170578169	AC026316.4	+	protein_coding	78	opposite	11867_ID	chr3	170559884	170559961	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3105	ENST00000410519.1	ENST00000664430.1_1	chr10	91923407	91923717	RN7SKP143	-	misc_RNA	chr10	91613351	91985200	LINC01374	+	lncRNA	310	opposite	9787_ID	chr10	91923408	91923717	310	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3129	ENST00000410651.1	ENST00000653109.1_3	chr3	191810910	191811225	RN7SKP222	+	misc_RNA	chr3	191796738	191837653	AC026320.3	-	lncRNA	315	opposite	9831_ID	chr3	191810911	191811225	315	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3173	ENST00000410873.1	ENST00000594663.1_5	chr19	17568065	17568166	AC010319.1	+	miRNA	chr19	17547419	17571613	AC010319.2	-	protein_coding	101	opposite	1056_ID	chr19	17568066	17568166	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3211	ENST00000411074.1	ENST00000379692.9_4	chr4	121982326	121982633	RN7SKP137	-	misc_RNA	chr4	121956767	121993690	NDNF	-	protein_coding	307	same	9785_ID	chr4	121982327	121982633	307	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3212	ENST00000411080.1	ENST00000339137.7_4	chr9	88873272	88873561	RN7SKP264	-	misc_RNA	chr9	88835179	88874572	C9orf153	-	protein_coding	289	same	9863_ID	chr9	88873273	88873561	289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3234	ENST00000411224.1	ENST00000423462.6_1	chr10	16518001	16518163	RNU2-18P	+	snRNA	chr10	16478941	16555744	PTER	+	protein_coding	162	same	10622_ID	chr10	16518002	16518163	162	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3261	ENST00000411381.1	ENST00000561460.5_1	chr15	40821768	40821872	RNU6-516P	+	snRNA	chr15	40780239	40850218	AC091045.1	+	lncRNA	104	same	11301_ID	chr15	40821769	40821872	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3294	ENST00000411895.1_3	ENST00000673446.1_1	chr6	111681843	111682810	REV3L-IT1	-	lncRNA	chr6	111588861	111766557	MFSD4B	+	processed_transcript	967	opposite	9733_ID	chr6	111681844	111682810	967	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3296	ENST00000411954.1	ENST00000445753.1	chr1	143687242	143716941	RP6-206I17.2	+	lincRNA	chr1	143647638	143744410	RP6-206I17.1	-	lincRNA	33305	opposite	11947_ID	chr1	143687243	143716941	29699	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3310	ENST00000412153.1_3	ENST00000652995.1_1	chr2	177370972	177372430	AC017048.1	-	lncRNA	chr2	177359982	177520695	LINC01117	+	lncRNA	1458	opposite	1600_ID	chr2	177370973	177372430	1458	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3315	ENST00000412193.1_3	ENST00000415434.5_1	chr2	242967333	242968327	AC093642.1	-	lncRNA	chr2	242823516	243020873	LINC01237	+	lncRNA	994	opposite	3232_ID	chr2	242967334	242968327	994	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3324	ENST00000412468.3_1	ENST00000311403.4_3	chr17	7384650	7386815	SLC35G6	+	protein_coding	chr17	7362684	7387582	ZBTB4	-	protein_coding	2165	opposite	12093_ID	chr17	7384651	7386815	2165	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3330	ENST00000412593.1_1	ENST00000431985.5_3	chr2	139228225	139231502	AC114763.2	+	lncRNA	chr2	139175853	139259268	AC114763.1	-	lncRNA	3277	opposite	3872_ID	chr2	139228226	139231502	3277	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3346	ENST00000413066.1_3	ENST00000668681.1_3	chr9	7930826	7935137	AL135923.1	-	lncRNA	chr9	7914513	7961224	AL135923.2	-	lncRNA	4311	same	4879_ID	chr9	7930827	7935137	4311	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3348	ENST00000413096.1_3	ENST00000409066.1_5	chr2	228481713	228482506	AC064853.1	-	lncRNA	chr2	228474806	228498036	C2orf83	-	processed_transcript	793	same	2364_ID	chr2	228481714	228482506	793	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3357	ENST00000413347.2_3	ENST00000366760.5_3	chr1	227931531	227934892	SNAP47-AS1	-	lncRNA	chr1	227916357	227968927	SNAP47	+	protein_coding	3361	opposite	12143_ID	chr1	227931532	227934892	3361	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3363	ENST00000413496.2_3	ENST00000391770.9_2	chr19	54377879	54379303	AC008440.1	-	lncRNA	chr19	54371136	54379689	MYADM	+	protein_coding	1424	opposite	730_ID	chr19	54377880	54379303	1424	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
3411	ENST00000414756.1_1	ENST00000654128.1_1	chr2	216341389	216344971	AC012462.2	+	lncRNA	chr2	216318445	216351362	AC012462.1	+	lncRNA	3582	same	1390_ID	chr2	216341390	216344971	3582	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3428	ENST00000415041.1_2	ENST00000666840.1_3	chr4	9221877	9223470	USP17L12	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12859_ID	chr4	9221878	9223470	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3436	ENST00000415193.5_3	ENST00000653072.1_1	chr13	89867100	89889144	LINC01047	-	lncRNA	chr13	89833577	89931452	LINC00440	+	lncRNA	22044	opposite	7595_ID	chr13	89867101	89889144	22044	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3441	ENST00000415327.1	ENST00000653778.1_3	chr2	65257860	65264631	AC007386.4	-	antisense	chr2	65129438	65283302	LINC02245	-	lncRNA	6771	same	559_ID	chr2	65257861	65264631	6771	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3448	ENST00000415342.1_3	ENST00000418066.2_1	chr2	69927323	69940979	AC092431.1	-	lncRNA	chr2	69871556	70008692	ANXA4	+	processed_transcript	13656	opposite	3092_ID	chr2	69927324	69940979	13656	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3452	ENST00000415509.1_3	ENST00000662754.1_1	chr10	125185228	125187156	AL160290.1	-	lncRNA	chr10	125117794	125297283	LINC02641	+	lncRNA	1928	opposite	5139_ID	chr10	125185229	125187156	1928	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3461	ENST00000415726.1_1	ENST00000477754.2_3	chr1	155961180	155971578	ARHGEF2-AS1	+	lncRNA	chr1	155916645	155972355	ARHGEF2	-	processed_transcript	10398	opposite	6336_ID	chr1	155961181	155971578	10398	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
3468	ENST00000416002.1_1	ENST00000671206.1_3	chr21	19986748	20022678	AF240627.1	+	lncRNA	chr21	19933582	20132633	MIR548XHG	-	lncRNA	35930	opposite	4405_ID	chr21	19986749	20022678	35930	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3472	ENST00000416090.1_1	ENST00000650264.1_3	chr13	110380628	110382354	LINC00676	+	lncRNA	chr13	110131085	110384047	AL163541.1	-	lncRNA	1726	opposite	7571_ID	chr13	110380629	110382354	1726	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3474	ENST00000416173.1_3	ENST00000654007.1_3	chr2	15026770	15047788	AC068286.1	-	lncRNA	chr2	14845791	15132190	AC068286.2	-	lncRNA	21018	same	2400_ID	chr2	15026771	15047788	21018	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3482	ENST00000416430.1_1	ENST00000312504.10_2	chr2	215374919	215401614	VWC2L-IT1	+	lncRNA	chr2	215275777	215443700	VWC2L	+	protein_coding	26695	same	12901_ID	chr2	215374920	215401614	26695	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3483	ENST00000416430.1_1	ENST00000412896.5_4	chr2	215374919	215401614	VWC2L-IT1	+	lncRNA	chr2	215114763	215548970	AC068051.1	-	lncRNA	26695	opposite	12900_ID	chr2	215374920	215401614	26695	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3488	ENST00000416470.1_3	ENST00000648702.1_3	chr1	19918295	19923326	AL031727.2	-	lncRNA	chr1	19810896	19953124	MICOS10	+	protein_coding	5031	opposite	4557_ID	chr1	19918296	19923326	5031	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3529	ENST00000417945.1_3	ENST00000666840.1_3	chr4	9212382	9213975	USP17L10	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12857_ID	chr4	9212383	9213975	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3542	ENST00000418255.1_1	ENST00000397332.2_4	chr1	40363416	40364770	MYCL-AS1	+	lncRNA	chr1	40361097	40367685	MYCL	-	protein_coding	1354	opposite	9195_ID	chr1	40363417	40364770	1354	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
3557	ENST00000418591.1_3	ENST00000447289.1_1	chr2	217735163	217738655	AC007557.3	-	lncRNA	chr2	217559186	217858722	AC007563.2	+	lncRNA	3492	opposite	601_ID	chr2	217735164	217738655	3492	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3571	ENST00000418966.1_1	ENST00000374433.7_4	chr10	44141389	44143467	ZNF32-AS2	+	lncRNA	chr10	44139309	44144329	ZNF32	-	protein_coding	2078	opposite	13037_ID	chr10	44141390	44143467	2078	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
3605	ENST00000419891.1_4	ENST00000662798.1_3	chr1	247875114	247887066	AC118470.1	-	protein_coding	chr1	247803065	247924557	AL390860.1	+	lncRNA	11952	opposite	3945_ID	chr1	247875115	247887066	11952	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3615	ENST00000420130.1_4	ENST00000420404.2_2	chr2	16497591	16500834	AC010745.4	-	lncRNA	chr2	16405314	16515246	AC010745.2	+	lncRNA	3243	opposite	1136_ID	chr2	16497592	16500834	3243	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3617	ENST00000420180.1_3	ENST00000416352.1_3	chr22	30107808	30115703	AC004882.2	-	lncRNA	chr22	30101244	30115848	AC004882.1	-	lncRNA	7895	same	190_ID	chr22	30107809	30115703	7895	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
3636	ENST00000420748.1_3	ENST00000432096.2_1	chr7	39649208	39649889	AC004837.3	-	lncRNA	chr7	39606004	39649919	YAE1	+	protein_coding	681	opposite	182_ID	chr7	39649209	39649889	681	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
3655	ENST00000421318.1_1	ENST00000435946.1_1	chr6	75352099	75361718	AL356277.2	+	lncRNA	chr6	74779166	75400443	AL357507.1	+	lncRNA	9619	same	5380_ID	chr6	75352100	75361718	9619	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3664	ENST00000421491.4_4	ENST00000658435.1_3	chr4	135117487	135122944	PABPC4L	-	protein_coding	chr4	134947819	135248644	AC015631.1	-	lncRNA	5457	same	9493_ID	chr4	135117488	135122944	5457	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3684	ENST00000421907.1_3	ENST00000447289.1_1	chr2	217731054	217732536	AC007557.4	-	lncRNA	chr2	217559186	217858722	AC007563.2	+	lncRNA	1482	opposite	602_ID	chr2	217731055	217732536	1482	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3704	ENST00000422271.1_3	ENST00000667646.1_1	chr3	194485966	194489441	LINC01972	-	lncRNA	chr3	194429171	194546737	LINC01968	+	lncRNA	3475	opposite	7708_ID	chr3	194485967	194489441	3475	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3708	ENST00000422473.1_1	ENST00000535199.5_3	chr21	37477178	37481988	AP000688.2	+	lncRNA	chr21	37441939	37498938	AP000688.1	-	lncRNA	4810	opposite	6009_ID	chr21	37477179	37481988	4810	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3719	ENST00000422679.1_1	ENST00000642633.1_3	chr9	27656	30891	MIR1302-9HG	+	lncRNA	chr9	24891	73865	WASHC1	-	protein_coding	3235	opposite	8075_ID	chr9	27657	30891	3235	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3741	ENST00000423208.2_1	ENST00000656901.1_3	chr6	125995498	126041364	LINC02523	+	lncRNA	chr6	125898690	126070326	AL365259.1	-	lncRNA	45866	opposite	7781_ID	chr6	125995499	126041364	45866	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3750	ENST00000423391.3_3	ENST00000506106.1_2	chr5	56775844	56778638	ACTBL2	-	protein_coding	chr5	56690886	56829251	AC025470.2	+	lncRNA	2794	opposite	4340_ID	chr5	56775845	56778638	2794	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3780	ENST00000424439.3_2	ENST00000293874.2_3	chr16	617004	619495	NHLRC4	+	protein_coding	chr16	616994	624519	PIGQ	+	protein_coding	2491	same	9260_ID	chr16	617005	619495	2491	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
3784	ENST00000424474.2	ENST00000438000.1	chr1	143154492	143169717	RP11-782C8.4	+	lincRNA	chr1	143119060	143233417	RP11-782C8.1	+	lincRNA	15225	same	11936_ID	chr1	143154493	143169717	15225	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3785	ENST00000424479.7_5	ENST00000529872.1_1	chr8	38120647	38126742	PLPP5	-	protein_coding	chr8	38117590	38133076	DDHD2	+	processed_transcript	6114	opposite	9585_ID	chr8	38120648	38126742	6095	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3808	ENST00000425048.1_3	ENST00000659314.1_1	chr13	90129861	90152763	LINC01040	-	lncRNA	chr13	90054651	90470707	LINC02336	+	lncRNA	22902	opposite	7594_ID	chr13	90129862	90152763	22902	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3823	ENST00000425365.1_1	ENST00000414903.1_1	chr10	92222473	92227709	AL391704.2	+	lncRNA	chr10	92214454	92262725	AL391704.1	+	lncRNA	5236	same	5583_ID	chr10	92222474	92227709	5236	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3825	ENST00000425385.1_1	ENST00000673791.1_2	chr20	46612147	46613057	LINC01523	+	lncRNA	chr20	46605482	46618854	LINC01522	-	lncRNA	910	opposite	7647_ID	chr20	46612148	46613057	910	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3843	ENST00000425966.6_3	ENST00000427417.1_3	chr2	62296581	62374016	AC018462.1	-	lncRNA	chr2	62228113	62374382	COMMD1	+	protein_coding	77435	opposite	1621_ID	chr2	62296582	62374016	77435	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	3
3850	ENST00000426426.3_2	ENST00000537366.5_3	chr12	120031578	120080880	TMEM233	+	protein_coding	chr12	119825791	120105884	AC002070.1	-	lncRNA	49302	opposite	12723_ID	chr12	120031579	120080880	49302	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3867	ENST00000427182.1_1	ENST00000457975.2_3	chr10	57265978	57272977	AL355314.2	+	lncRNA	chr10	57007514	57356993	AC016822.1	-	lncRNA	6999	opposite	5333_ID	chr10	57265979	57272977	6999	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3876	ENST00000427686.3_4	ENST00000494295.1_3	chrX	134386008	134387531	ETDA	+	protein_coding	chrX	134382866	134478012	ZNF75D	-	processed_transcript	1523	opposite	6935_ID	chrX	134386009	134387531	1523	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3901	ENST00000428485.1_3	ENST00000664430.1_1	chr10	91675245	91717130	LINC01375	-	lncRNA	chr10	91613351	91985200	LINC01374	+	lncRNA	41885	opposite	7640_ID	chr10	91675246	91717130	41885	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3905	ENST00000428624.1	ENST00000443548.1	chr1	143377280	143398889	RP11-435B5.5	+	lincRNA	chr1	143356064	143467532	RP11-435B5.4	-	lincRNA	24253	opposite	11911_ID	chr1	143377281	143398889	21609	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3914	ENST00000428777.1_3	ENST00000309446.11_4	chr2	207985607	207986768	KLF7-IT1	-	lncRNA	chr2	207938860	208030672	KLF7	-	protein_coding	1161	same	7451_ID	chr2	207985608	207986768	1161	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3922	ENST00000429017.2_3	ENST00000440016.6_3	chr2	176994421	176997423	HOXD8	+	protein_coding	chr2	176986338	177001741	HOXD-AS2	-	lncRNA	3002	opposite	7283_ID	chr2	176994422	176997423	3002	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3934	ENST00000429317.1_3	ENST00000665690.1_1	chr2	151091405	151113521	LINC01817	-	lncRNA	chr2	151026032	151212974	LINC01818	+	lncRNA	22116	opposite	7684_ID	chr2	151091406	151113521	22116	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3939	ENST00000429450.1_1	ENST00000357195.8_4	chr14	99729284	99731072	AL109767.1	+	lncRNA	chr14	99635623	99738534	BCL11B	-	protein_coding	1788	opposite	4704_ID	chr14	99729285	99731072	1788	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3940	ENST00000429456.1_1	ENST00000415434.5_1	chr2	242912833	242919427	LINC01238	+	lncRNA	chr2	242823516	243020873	LINC01237	+	lncRNA	6594	same	7624_ID	chr2	242912834	242919427	6594	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3947	ENST00000429667.1_3	ENST00000666840.1_3	chr4	9226621	9228214	USP17L13	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12860_ID	chr4	9226622	9228214	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3949	ENST00000429711.7_5	ENST00000454887.1_5	chr3	12875983	12883064	RPL32	-	protein_coding	chr3	12868944	12913415	CAND2	+	protein_coding	7098	opposite	11953_ID	chr3	12875984	12883064	7081	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3954	ENST00000429980.1	ENST00000429980.6_1	chr9	72700	88826	RP11-143M1.2	+	antisense	chr9	72676	89850	PGM5P3-AS1	+	lncRNA	16126	same	11878_ID	chr9	72701	88826	16126	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
3955	ENST00000430033.1_2	ENST00000650209.1_3	chr13	74138380	74162207	LINC00392	+	lncRNA	chr13	74110562	74236004	LINC00393	-	lncRNA	23827	opposite	7545_ID	chr13	74138381	74162207	23827	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3965	ENST00000430184.1_3	ENST00000370501.4_2	chr20	61363917	61366699	AL357033.2	-	lncRNA	chr20	61340187	61394123	NTSR1	+	protein_coding	2782	opposite	5406_ID	chr20	61363918	61366699	2782	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3974	ENST00000430391.1_1	ENST00000432230.6_3	chr21	16290854	16319417	AF127577.3	+	lncRNA	chr21	16191163	16386751	AF127577.4	-	lncRNA	28563	opposite	4387_ID	chr21	16290855	16319417	28563	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3985	ENST00000430626.1_1	ENST00000522575.1_1	chr8	49502960	49507181	LINC02599	+	lncRNA	chr8	49464126	49611069	AC022915.2	+	lncRNA	4221	same	7786_ID	chr8	49502961	49507181	4221	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
3993	ENST00000430770.1_1	ENST00000367326.1_1	chr6	150921969	150926986	AL450344.3	+	lncRNA	chr6	150921018	151054957	PLEKHG1	+	protein_coding	5017	same	5656_ID	chr6	150921970	150926986	5017	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4013	ENST00000431455.1_3	ENST00000652995.1_1	chr2	177389606	177396411	AC017048.2	-	lncRNA	chr2	177359982	177520695	LINC01117	+	lncRNA	6805	opposite	1601_ID	chr2	177389607	177396411	6805	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4015	ENST00000431512.1_1	ENST00000489140.1_3	chr3	193271001	193272877	ATP13A4-AS1	+	lncRNA	chr3	193220333	193310900	ATP13A4	-	processed_transcript	1876	opposite	6366_ID	chr3	193271002	193272877	1876	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4016	ENST00000431554.2_1	ENST00000505762.1_4	chr6	53794843	53862465	AL033384.1	+	lncRNA	chr6	53794779	53989452	MLIP	+	protein_coding	67646	same	4574_ID	chr6	53794844	53862465	67622	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
4044	ENST00000432395.1_1	ENST00000370453.5_1	chr1	90254472	90256051	AC099568.1	+	lncRNA	chr1	90098698	90398809	AC093423.3	+	nonsense_mediated_decay	1579	same	3382_ID	chr1	90254473	90256051	1579	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4060	ENST00000432841.1_2	ENST00000660873.1_3	chr6	28021005	28021943	OR2B8P	-	polymorphic_pseudogene	chr6	27982899	28104599	ZSCAN16-AS1	-	lncRNA	938	same	9381_ID	chr6	28021006	28021943	938	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4081	ENST00000433377.1_3	ENST00000664270.1_1	chr1	54982084	54982932	LINC02784	-	lncRNA	chr1	54980089	54983056	AC099796.2	+	lncRNA	848	opposite	7798_ID	chr1	54982085	54982932	848	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
4096	ENST00000433810.1_1	ENST00000641950.2_4	chr2	16060520	16076139	MYCNUT	+	lncRNA	chr2	16058472	16081370	MYCNOS	-	lncRNA	15619	opposite	9196_ID	chr2	16060521	16076139	15619	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
4118	ENST00000434589.1_1	ENST00000663561.1_3	chr21	40260695	40275829	AP001043.1	+	lncRNA	chr21	40184801	40277347	AP001042.1	-	lncRNA	15134	opposite	6076_ID	chr21	40260696	40275829	15134	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
4133	ENST00000434973.1_1	ENST00000447289.1_1	chr2	217664330	217670058	AC007563.1	+	lncRNA	chr2	217559186	217858722	AC007563.2	+	lncRNA	5728	same	605_ID	chr2	217664331	217670058	5728	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4139	ENST00000435093.1_1	ENST00000642620.1_4	chrX	43808977	43828866	NDP-AS1	+	lncRNA	chrX	43808021	43832636	NDP	-	protein_coding	21851	opposite	9244_ID	chrX	43808978	43828866	19889	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	3
4146	ENST00000435257.1_1	ENST00000455502.5_1	chr7	93520224	93522913	TFPI2-DT	+	lncRNA	chr7	93220884	93540387	GNGT1	+	protein_coding	2689	same	12667_ID	chr7	93520225	93522913	2689	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4156	ENST00000435401.1_3	ENST00000659314.1_1	chr13	90200944	90206058	LINC00353	-	lncRNA	chr13	90054651	90470707	LINC02336	+	lncRNA	5114	opposite	7544_ID	chr13	90200945	90206058	5114	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4188	ENST00000436359.1_1	ENST00000332440.4_5	chr21	44885188	44887178	AP001048.1	+	lncRNA	chr21	44881839	44898103	LINC00313	-	lncRNA	1990	opposite	6077_ID	chr21	44885189	44887178	1990	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4193	ENST00000436429.1_1	ENST00000432230.6_3	chr21	16343790	16365175	AF127577.2	+	lncRNA	chr21	16191163	16386751	AF127577.4	-	lncRNA	21385	opposite	4385_ID	chr21	16343791	16365175	21385	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4206	ENST00000436872.2_1	ENST00000318245.5_2	chr13	76451021	76455263	LMO7DN-IT1	+	lncRNA	chr13	76445173	76457947	LMO7DN	+	lncRNA	4242	same	7838_ID	chr13	76451022	76455263	4242	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4209	ENST00000436893.1_3	ENST00000614558.2_3	chrX	38660820	38663136	MID1IP1-AS1	-	lncRNA	chrX	38660684	38665781	MID1IP1	+	protein_coding	2316	opposite	7950_ID	chrX	38660821	38663136	2316	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
4211	ENST00000436960.1_3	ENST00000371268.4_2	chr1	55446622	55457947	AL590440.1	-	lncRNA	chr1	55446300	55457961	TMEM61	+	protein_coding	11325	opposite	5769_ID	chr1	55446623	55457947	11325	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	3
4215	ENST00000437043.8_5	ENST00000501338.5_4	chr5	96212203	96255407	ERAP2	+	protein_coding	chr5	96149730	96271513	AC009126.1	-	lncRNA	43718	opposite	6916_ID	chr5	96212204	96255407	43204	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4249	ENST00000438113.2_2	ENST00000670559.1_1	chr22	27299302	27316898	Z97353.2	+	lncRNA	chr22	27256515	27364726	LINC01422	+	lncRNA	17644	same	12967_ID	chr22	27299303	27316898	17596	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4258	ENST00000438474.1_2	ENST00000429063.5_1	chr11	5747731	5748694	OR52P1P	+	polymorphic_pseudogene	chr11	5729437	5758319	TRIM22	+	protein_coding	963	same	9452_ID	chr11	5747732	5748694	963	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4269	ENST00000438633.1_1	ENST00000432993.1_1	chr2	220992266	221077212	AC093083.1	+	lncRNA	chr2	220970376	221315499	AC019211.1	+	lncRNA	84946	same	3181_ID	chr2	220992267	221077212	84946	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4336	ENST00000440413.1_3	ENST00000372469.6_2	chr9	132475174	132480914	PRRX2-AS1	-	lncRNA	chr9	132427925	132484953	PRRX2	+	protein_coding	5740	opposite	9657_ID	chr9	132475175	132480914	5740	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4346	ENST00000440614.1_1	ENST00000473897.1_3	chrX	133733486	133740284	AL672032.1	+	lncRNA	chrX	133700539	133898293	PLAC1	-	processed_transcript	6798	opposite	5883_ID	chrX	133733487	133740284	6798	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
4351	ENST00000440769.3_1	ENST00000650150.1_3	chr5	90575913	90576959	AC123595.1	-	lncRNA	chr5	90447027	90610219	LUCAT1	-	lncRNA	1046	same	3991_ID	chr5	90575914	90576959	1046	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4354	ENST00000440900.1_3	ENST00000447289.1_1	chr2	217719111	217719855	AC007557.2	-	lncRNA	chr2	217559186	217858722	AC007563.2	+	lncRNA	744	opposite	600_ID	chr2	217719112	217719855	744	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4371	ENST00000441379.5_1	ENST00000521995.1_5	chr21	46340965	46349593	ITGB2-AS1	+	lncRNA	chr21	46330198	46351904	ITGB2	-	protein_coding	8628	opposite	7377_ID	chr21	46340966	46349593	8628	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4398	ENST00000442200.1_3	ENST00000309988.9_2	chr2	95717139	95718921	AC103563.2	-	lncRNA	chr2	95691452	95719737	MAL	+	protein_coding	1782	opposite	3449_ID	chr2	95717140	95718921	1782	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4407	ENST00000442423.1	ENST00000445753.1	chr1	143719662	143721171	RP6-206I17.3	-	lincRNA	chr1	143647638	143744410	RP6-206I17.1	-	lincRNA	1509	same	11948_ID	chr1	143719663	143721171	1509	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4442	ENST00000443359.1_3	ENST00000636209.1_2	chr9	18360594	18362218	AL442638.1	-	lncRNA	chr9	17906560	18533290	ADAMTSL1	+	protein_coding	1624	opposite	5612_ID	chr9	18360595	18362218	1624	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4459	ENST00000444178.1_3	ENST00000441009.1_1	chr21	26310744	26365129	AP000146.1	-	lncRNA	chr21	26212863	26430059	LINC01692	+	lncRNA	54385	opposite	5961_ID	chr21	26310745	26365129	54385	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4465	ENST00000444324.2_1	ENST00000527783.1_1	chr12	14994025	14997642	AC007655.1	+	lncRNA	chr12	14956610	15059520	C12orf60	+	processed_transcript	3617	same	623_ID	chr12	14994026	14997642	3617	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4487	ENST00000445084.1_1	ENST00000037869.7_3	chr2	70528582	70529204	AC022201.2	+	lncRNA	chr2	70523106	70529222	FAM136A	-	protein_coding	622	opposite	1839_ID	chr2	70528583	70529204	622	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
4496	ENST00000445350.2_1	ENST00000370363.5_3	chr6	74079426	74097440	OOEP-AS1	+	lncRNA	chr6	74078277	74104816	OOEP	-	protein_coding	18014	opposite	9337_ID	chr6	74079427	74097440	18014	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4502	ENST00000445464.1_1	ENST00000535199.5_3	chr21	37455156	37462712	AP000688.3	+	lncRNA	chr21	37441939	37498938	AP000688.1	-	lncRNA	7556	opposite	6010_ID	chr21	37455157	37462712	7556	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4536	ENST00000446404.1_3	ENST00000441009.1_1	chr21	26258989	26275070	AP000402.1	-	lncRNA	chr21	26212863	26430059	LINC01692	+	lncRNA	16081	opposite	5984_ID	chr21	26258990	26275070	16081	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4542	ENST00000446461.2_4	ENST00000440723.1_1	chr3	51907736	51909617	IQCF5	-	protein_coding	chr3	51907611	51909783	IQCF5-AS1	+	lncRNA	1881	opposite	7364_ID	chr3	51907737	51909617	1881	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
4596	ENST00000447975.1_1	ENST00000310380.11_4	chr3	194868599	194873519	XXYLT1-AS2	+	lncRNA	chr3	194789012	194991888	XXYLT1	-	protein_coding	4920	opposite	12925_ID	chr3	194868600	194873519	4920	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4615	ENST00000448696.4_2	ENST00000654736.1_3	chr9	21480837	21482312	IFNE	-	protein_coding	chr9	21453800	21559899	MIR31HG	-	lncRNA	1475	same	7329_ID	chr9	21480838	21482312	1475	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4626	ENST00000448858.1_1	ENST00000262244.6_4	chr9	27391731	27397561	AL163192.1	+	lncRNA	chr9	27325206	27529812	MOB3B	-	protein_coding	5830	opposite	5225_ID	chr9	27391732	27397561	5830	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4633	ENST00000449023.2_4	ENST00000490889.2_3	chr3	9291425	9299191	SRGAP3-AS4	+	lncRNA	chr3	9166421	9404737	SRGAP3	-	processed_transcript	7766	opposite	12544_ID	chr3	9291426	9299191	7766	*	+	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4698	ENST00000451103.1_1	ENST00000424036.2_2	chr7	62854654	62855817	AC073188.5	+	lncRNA	chr7	62854122	62882431	AC073188.2	+	lncRNA	1163	same	2510_ID	chr7	62854655	62855817	1163	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4710	ENST00000451435.1_2	ENST00000418004.5_4	chr20	36888576	36922294	AL359555.4	+	lncRNA	chr20	36888550	36932734	AL359555.3	+	lncRNA	33718	same	5493_ID	chr20	36888577	36922294	33718	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
4729	ENST00000451711.1_1	ENST00000447289.1_1	chr2	217732734	217733879	AC007557.1	+	lncRNA	chr2	217559186	217858722	AC007563.2	+	lncRNA	1145	same	599_ID	chr2	217732735	217733879	1145	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4739	ENST00000451869.1_1	ENST00000664453.1_3	chrX	114957296	114959381	DANT1	+	lncRNA	chrX	114929232	115085355	DANT2	-	lncRNA	2087	opposite	6765_ID	chrX	114957297	114959381	2085	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4768	ENST00000452736.1_1	ENST00000273067.5_4	chr2	217168047	217186460	AC069155.1	+	lncRNA	chr2	217122587	217237206	MARCHF4	-	protein_coding	18413	opposite	2470_ID	chr2	217168048	217186460	18413	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4786	ENST00000453284.1_1	ENST00000374433.7_4	chr10	44139319	44140495	ZNF32-AS1	+	lncRNA	chr10	44139309	44144329	ZNF32	-	protein_coding	1176	opposite	13036_ID	chr10	44139320	44140495	1176	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
4791	ENST00000453437.1_3	ENST00000296380.8_1	chr1	40980132	40980729	AL603839.1	-	lncRNA	chr1	40974432	40982228	EXO5	+	protein_coding	597	opposite	5833_ID	chr1	40980133	40980729	597	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
4797	ENST00000453639.1_1	ENST00000457975.2_3	chr10	57228086	57228982	AL355314.1	+	lncRNA	chr10	57007514	57356993	AC016822.1	-	lncRNA	896	opposite	5332_ID	chr10	57228087	57228982	896	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4821	ENST00000454203.1_1	ENST00000442996.1_1	chr2	175439954	175452454	AC010894.3	+	lncRNA	chr2	175411868	175639555	AC010894.2	+	lncRNA	12500	same	1158_ID	chr2	175439955	175452454	12500	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4826	ENST00000454271.1_3	ENST00000609271.1_5	chr1	169732069	169733789	AL021940.1	-	lncRNA	chr1	169702717	169733846	SELE	-	protein_coding	1720	same	4465_ID	chr1	169732070	169733789	1720	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
4836	ENST00000454588.1_3	ENST00000657496.1_3	chr6	143360561	143363461	AL023581.2	-	lncRNA	chr6	143342516	143380819	LINC01277	-	lncRNA	2900	same	4491_ID	chr6	143360562	143363461	2900	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4853	ENST00000455241.2_4	ENST00000615947.1_3	chr13	40746641	40763165	LINC00332	+	lncRNA	chr13	40653242	40847646	LINC00598	-	lncRNA	22857	opposite	7543_ID	chr13	40746642	40763165	16524	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4854	ENST00000455269.1_1	ENST00000370836.6_4	chrX	131801669	131803916	HS6ST2-AS1	+	lncRNA	chrX	131760043	132095423	HS6ST2	-	protein_coding	2247	opposite	7290_ID	chrX	131801670	131803916	2247	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4874	ENST00000455711.1_1	ENST00000607802.1_1	chr20	61669362	61685215	LINC01056	+	lncRNA	chr20	61640734	61716423	LINC01749	+	lncRNA	15853	same	7597_ID	chr20	61669363	61685215	15853	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4883	ENST00000456018.1_1	ENST00000367326.1_1	chr6	150945812	150947222	AL450344.1	+	lncRNA	chr6	150921018	151054957	PLEKHG1	+	protein_coding	1410	same	5654_ID	chr6	150945813	150947222	1410	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4891	ENST00000456163.2_2	ENST00000447289.1_1	chr2	217724670	217736366	LINC01921	+	lncRNA	chr2	217559186	217858722	AC007563.2	+	lncRNA	11696	same	7700_ID	chr2	217724671	217736366	11696	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4903	ENST00000456464.2_6	ENST00000666840.1_3	chr4	9236110	9237772	USP17L15	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1662	opposite	12861_ID	chr4	9236111	9237772	1662	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4923	ENST00000457044.1_1	ENST00000465754.6_3	chr9	35642510	35643514	AL357874.2	+	lncRNA	chr9	35616599	35646807	CD72	-	processed_transcript	1004	opposite	5437_ID	chr9	35642511	35643514	1004	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4956	ENST00000457736.1_3	ENST00000666840.1_3	chr4	9217130	9218723	USP17L11	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12858_ID	chr4	9217131	9218723	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4958	ENST00000457813.1_4	ENST00000652954.1_3	chr2	2733679	2734729	AC018685.1	-	lncRNA	chr2	2711139	2841977	AC011995.2	-	lncRNA	1050	same	1646_ID	chr2	2733680	2734729	1050	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
4977	ENST00000458461.1_3	ENST00000376862.4_2	chr20	24472107	24482981	AL157413.1	-	lncRNA	chr20	24450264	24647252	SYNDIG1	+	protein_coding	10874	opposite	5064_ID	chr20	24472108	24482981	10874	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4980	ENST00000458531.1_1	ENST00000310380.11_4	chr3	194815316	194816786	XXYLT1-AS1	+	lncRNA	chr3	194789012	194991888	XXYLT1	-	protein_coding	1470	opposite	12924_ID	chr3	194815317	194816786	1470	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4991	ENST00000458780.1	ENST00000510705.3_1	chr4	22120605	22120712	RNU6-420P	+	snRNA	chr4	21950637	22331953	AC096719.1	+	lncRNA	107	same	11222_ID	chr4	22120606	22120712	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5004	ENST00000458832.1	ENST00000669275.1_1	chr5	38081773	38081845	AC074129.1	-	miRNA	chr5	38025718	38184819	LINC02119	+	lncRNA	72	opposite	2571_ID	chr5	38081774	38081845	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5007	ENST00000458836.1	ENST00000661928.1_1	chr4	149912723	149912785	RNU7-197P	-	snRNA	chr4	149366918	149945776	AC002460.2	+	lncRNA	62	opposite	11761_ID	chr4	149912724	149912785	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5015	ENST00000458851.1	ENST00000607172.1_1	chr8	80712367	80712430	RNU7-85P	-	snRNA	chr8	80680376	80715077	LINC01607	+	lncRNA	63	opposite	11814_ID	chr8	80712368	80712430	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5074	ENST00000459238.1	ENST00000305108.9_4	chr12	698695	698755	RNU7-103P	-	snRNA	chr12	673461	772945	NINJ2	-	protein_coding	60	same	11692_ID	chr12	698696	698755	60	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5096	ENST00000459390.1	ENST00000411746.1	chr1	142653717	142653799	AL583842.1	+	miRNA	chr1	142619122	142729975	RP11-417J8.3	+	lincRNA	82	same	5725_ID	chr1	142653718	142653799	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5101	ENST00000459400.1	ENST00000661760.1_3	chr12	114040595	114040658	RNU7-114P	-	snRNA	chr12	114021690	114211491	LINC01234	-	lncRNA	63	same	11702_ID	chr12	114040596	114040658	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5106	ENST00000459426.1	ENST00000518663.1_1	chr8	8929964	8930026	RNU7-55P	-	snRNA	chr8	8873841	8974256	ERI1	+	processed_transcript	62	opposite	11791_ID	chr8	8929965	8930026	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5124	ENST00000459520.1	ENST00000634305.1_1	chr14	36874418	36874479	RNU7-93P	+	snRNA	chr14	36789958	37125368	AL132857.1	+	lncRNA	61	same	11819_ID	chr14	36874419	36874479	61	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5131	ENST00000459562.1	ENST00000370982.4_4	chr1	68238275	68238336	RNU7-80P	-	snRNA	chr1	68167157	68299150	GNG12	-	protein_coding	61	same	11811_ID	chr1	68238276	68238336	61	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5137	ENST00000459581.1	ENST00000434999.2_5	chr9	131306194	131306256	RNU7-171P	+	snRNA	chr9	131290935	131314689	AL356481.1	-	lncRNA	62	opposite	11742_ID	chr9	131306195	131306256	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5150	ENST00000460434.2	ENST00000636095.1_1	chrX	136677423	136677710	RN7SL325P	+	misc_RNA	chrX	136656127	137063922	Z96074.1	+	lncRNA	287	same	10105_ID	chrX	136677424	136677710	287	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5161	ENST00000461145.1_4	ENST00000565468.6_3	chr7	141114182	141116190	AC005692.1	-	lncRNA	chr7	140773863	141180180	TMEM178B	+	protein_coding	2008	opposite	326_ID	chr7	141114183	141116190	2008	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5184	ENST00000462522.2	ENST00000499227.6_1	chr8	71566814	71567118	RN7SL19P	-	misc_RNA	chr8	71520811	71575514	LACTB2-AS1	+	lncRNA	304	opposite	10014_ID	chr8	71566815	71567118	304	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5200	ENST00000463733.5_1	ENST00000497650.1_3	chr7	127228439	127231735	ARF5	+	retained_intron	chr7	127222873	127233660	GCC1	-	processed_transcript	3315	opposite	6330_ID	chr7	127228440	127231735	3296	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
5208	ENST00000464382.2_1	ENST00000465846.6_1	chr17	46634623	46637695	HOXB-AS2	+	lncRNA	chr17	46626991	46679694	HOXB-AS3	+	lncRNA	3072	same	7261_ID	chr17	46634624	46637695	3072	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5217	ENST00000464718.2	ENST00000502903.1_3	chr4	103269550	103269848	RN7SL728P	-	misc_RNA	chr4	103228713	103352415	SLC39A8	-	processed_transcript	298	same	10385_ID	chr4	103269551	103269848	298	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5247	ENST00000467017.2_4	ENST00000652254.1_2	chr7	123914724	123928906	AC006148.2	-	lncRNA	chr7	123672666	124129626	AC006148.1	+	lncRNA	14182	opposite	430_ID	chr7	123914725	123928906	14182	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5263	ENST00000468013.2	ENST00000511222.1_1	chr4	55929901	55930196	RN7SL424P	+	misc_RNA	chr4	55919226	55958701	AC111194.2	+	lncRNA	295	same	10173_ID	chr4	55929902	55930196	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5266	ENST00000468334.5_1	ENST00000435042.1_3	chr5	131991954	131996242	IL13	+	processed_transcript	chr5	131973767	131999964	TH2LCRR	-	lncRNA	4848	opposite	7348_ID	chr5	131991955	131996242	4288	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5279	ENST00000469345.2	ENST00000310380.11_4	chr3	194867458	194867732	RN7SL36P	-	misc_RNA	chr3	194789012	194991888	XXYLT1	-	protein_coding	274	same	10135_ID	chr3	194867459	194867732	274	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5281	ENST00000469492.2	ENST00000515535.1_1	chr19	58581337	58581607	RN7SL526P	+	misc_RNA	chr19	58571101	58597677	ZNF135	+	nonsense_mediated_decay	270	same	10251_ID	chr19	58581338	58581607	270	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5284	ENST00000469674.2	ENST00000622269.1_1	chr15	90837182	90837455	RN7SL736P	+	misc_RNA	chr15	90809548	90857731	AC091167.6	+	protein_coding	273	same	10391_ID	chr15	90837183	90837455	273	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5298	ENST00000470538.2	ENST00000670861.1_3	chr13	95351478	95351756	RN7SL585P	-	misc_RNA	chr13	95350978	95360729	LINC00391	-	lncRNA	278	same	10286_ID	chr13	95351479	95351756	278	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	3	3
5299	ENST00000470547.2	ENST00000558730.2_3	chr16	55325292	55325587	RN7SL841P	-	misc_RNA	chr16	55293880	55367500	AC109462.1	-	lncRNA	295	same	10472_ID	chr16	55325293	55325587	295	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5305	ENST00000470677.1_3	ENST00000652254.1_2	chr7	123977433	123989914	AC004930.1	-	lncRNA	chr7	123672666	124129626	AC006148.1	+	lncRNA	12481	opposite	198_ID	chr7	123977434	123989914	12481	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5329	ENST00000472240.1_3	ENST00000447607.5_5	chr22	36023034	36031181	AL049747.1	-	lncRNA	chr22	36006930	36033998	MB	-	protein_coding	8147	same	4631_ID	chr22	36023035	36031181	8147	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5336	ENST00000472514.1_1	ENST00000460754.1_3	chr3	65879490	65910972	MAGI1-AS1	+	lncRNA	chr3	65858489	65940233	MAGI1-IT1	-	lncRNA	31482	opposite	7906_ID	chr3	65879491	65910972	31482	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
5343	ENST00000473110.1_3	ENST00000486975.1_2	chr3	170458139	170459154	AC026316.2	-	lncRNA	chr3	170136655	170578169	AC026316.4	+	protein_coding	1015	opposite	2124_ID	chr3	170458140	170459154	1015	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5349	ENST00000473332.2	ENST00000500016.1_3	chr14	71076802	71077094	RN7SL77P	+	misc_RNA	chr14	71075514	71108015	AL357153.1	-	lncRNA	292	opposite	10427_ID	chr14	71076803	71077094	292	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
5354	ENST00000473502.2	ENST00000409613.5_1	chr2	233514558	233514845	RN7SL359P	+	misc_RNA	chr2	233470766	233547050	EFHD1	+	protein_coding	287	same	10128_ID	chr2	233514559	233514845	287	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5355	ENST00000473520.1_2	ENST00000652254.1_2	chr7	124116424	124117009	SSU72P8	+	protein_coding	chr7	123672666	124129626	AC006148.1	+	lncRNA	585	same	12553_ID	chr7	124116425	124117009	585	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5358	ENST00000473756.1_1	ENST00000474798.1_1	chr3	98699901	98701940	LINC00973	+	lncRNA	chr3	98621267	98737406	AC091212.1	+	lncRNA	2039	same	7586_ID	chr3	98699902	98701940	2039	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5371	ENST00000474110.2	ENST00000653858.1_1	chr16	75732430	75732728	RN7SL520P	-	misc_RNA	chr16	75681688	75795728	TERF2IP	+	protein_coding	298	opposite	10246_ID	chr16	75732431	75732728	298	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5414	ENST00000477850.2	ENST00000657016.1_1	chr13	53832211	53832505	RN7SL618P	+	misc_RNA	chr13	53781965	54374560	AL356295.1	+	lncRNA	294	same	10311_ID	chr13	53832212	53832505	294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5418	ENST00000478139.1_3	ENST00000546873.1_5	chr12	102122425	102133250	SYCP3	-	retained_intron	chr12	102120100	102137918	CHPT1	+	nonsense_mediated_decay	10825	opposite	12585_ID	chr12	102122426	102133250	10825	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	3
5419	ENST00000478262.2_4	ENST00000651039.1_3	chr6	37179956	37225413	AL353579.1	-	protein_coding	chr6	37179953	37225428	TMEM217	-	protein_coding	45457	same	5238_ID	chr6	37179957	37225413	45457	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	3
5426	ENST00000478458.2	ENST00000565543.2_4	chr15	72904160	72904401	RN7SL485P	+	misc_RNA	chr15	72900821	72929303	LINC02259	-	lncRNA	241	opposite	10215_ID	chr15	72904161	72904401	241	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5463	ENST00000481350.2_3	ENST00000271331.4_2	chr1	110999126	110999976	AL358215.1	-	lncRNA	chr1	110993770	110999980	PROK1	+	protein_coding	850	opposite	5447_ID	chr1	110999127	110999976	850	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
5490	ENST00000483023.1_1	ENST00000667551.1_1	chr2	9814151	9848542	AC082651.4	+	lncRNA	chr2	9778876	9853049	AC082651.1	+	lncRNA	36539	same	2708_ID	chr2	9814152	9848542	34391	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5495	ENST00000483714.2	ENST00000551065.5_1	chr12	94224851	94225146	RN7SL630P	+	misc_RNA	chr12	94071174	94288616	CRADD	+	nonsense_mediated_decay	295	same	10321_ID	chr12	94224852	94225146	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5502	ENST00000484133.2	ENST00000657609.1_1	chr13	52043885	52044181	RN7SL320P	+	misc_RNA	chr13	52026499	52128814	INTS6-AS1	+	lncRNA	296	same	10102_ID	chr13	52043886	52044181	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5514	ENST00000484915.2	ENST00000554725.1_1	chr14	57291091	57291374	RN7SL461P	-	misc_RNA	chr14	57279988	57618895	OTX2-AS1	+	lncRNA	283	opposite	10202_ID	chr14	57291092	57291374	283	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5523	ENST00000485236.2	ENST00000417638.1_3	chr9	12764761	12765054	RN7SL849P	-	misc_RNA	chr9	12700099	12814344	LURAP1L-AS1	-	lncRNA	293	same	10477_ID	chr9	12764762	12765054	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5525	ENST00000485246.2	ENST00000653778.1_3	chr2	65133998	65134272	RN7SL211P	-	misc_RNA	chr2	65129438	65283302	LINC02245	-	lncRNA	274	same	10023_ID	chr2	65133999	65134272	274	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5545	ENST00000486314.2	ENST00000658843.1_3	chr6	96730442	96730737	RN7SL797P	+	misc_RNA	chr6	96647715	96969593	UFL1-AS1	-	lncRNA	295	opposite	10439_ID	chr6	96730443	96730737	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5563	ENST00000488398.2	ENST00000378061.7_4	chr7	148822784	148823078	RN7SL521P	-	misc_RNA	chr7	148799875	148823416	ZNF425	-	protein_coding	294	same	10248_ID	chr7	148822785	148823078	294	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5578	ENST00000489734.2	ENST00000439412.6_4	chr2	61058799	61059063	RN7SL632P	-	misc_RNA	chr2	61050203	61108452	LINC01185	-	lncRNA	264	same	10322_ID	chr2	61058800	61059063	264	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5586	ENST00000490139.1_3	ENST00000655310.1_1	chr3	112861196	112886666	LINC02044	-	lncRNA	chr3	112738314	112903224	AC078785.1	+	lncRNA	25470	opposite	7718_ID	chr3	112861197	112886666	25470	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
5588	ENST00000490232.2	ENST00000635177.1_2	chr14	50329270	50329567	RN7SL2	-	misc_RNA	chr14	50327893	50331044	AL627171.2	-	lncRNA	297	same	10016_ID	chr14	50329271	50329567	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5604	ENST00000491321.1_1	ENST00000393780.3_3	chr3	115377379	115380126	AC092468.1	+	lncRNA	chr3	115342356	115440337	GAP43	+	protein_coding	2747	same	3098_ID	chr3	115377380	115380126	2747	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5609	ENST00000491561.2	ENST00000559322.5_3	chr15	90709464	90709756	RN7SL346P	+	misc_RNA	chr15	90703835	90761018	SEMA4B	+	protein_coding	292	same	10118_ID	chr15	90709465	90709756	292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5615	ENST00000491934.2_3	ENST00000307365.4_2	chr10	74034672	74035738	DDIT4-AS1	-	lncRNA	chr10	74033681	74035794	DDIT4	+	protein_coding	1066	opposite	6780_ID	chr10	74034673	74035738	1066	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
5623	ENST00000492442.2	ENST00000435636.5_1	chr13	60608600	60608896	RN7SL375P	-	misc_RNA	chr13	60586884	60618491	DIAPH3-AS1	+	lncRNA	296	opposite	10138_ID	chr13	60608601	60608896	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5639	ENST00000493131.1_3	ENST00000393934.7_2	chr3	111395582	111396280	PLCXD2-AS1	-	lncRNA	chr3	111393522	111565294	PLCXD2	+	protein_coding	698	opposite	9579_ID	chr3	111395583	111396280	698	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5651	ENST00000494228.2	ENST00000402563.5_5	chr18	13715098	13715367	RN7SL362P	-	misc_RNA	chr18	13663349	13726591	FAM210A	-	protein_coding	269	same	10130_ID	chr18	13715099	13715367	269	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5672	ENST00000496150.2	ENST00000669855.1_3	chr10	64109767	64110048	RN7SL591P	+	misc_RNA	chr10	64099311	64134853	AC024597.1	-	lncRNA	281	opposite	10291_ID	chr10	64109768	64110048	281	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5673	ENST00000496286.2	ENST00000580422.1_3	chr17	15311700	15312003	RN7SL792P	+	misc_RNA	chr17	15283180	15321195	AC005703.3	-	lncRNA	303	opposite	10435_ID	chr17	15311701	15312003	303	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5698	ENST00000497988.1_1	ENST00000486975.1_2	chr3	170374350	170379912	AC026316.3	+	lncRNA	chr3	170136655	170578169	AC026316.4	+	protein_coding	5562	same	2126_ID	chr3	170374351	170379912	5562	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5724	ENST00000499601.2_1	ENST00000519398.1_3	chr5	179286012	179288283	AC008393.1	+	lncRNA	chr5	179280282	179289173	MRNIP	-	retained_intron	2271	opposite	721_ID	chr5	179286013	179288283	2271	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
5727	ENST00000500093.2_1	ENST00000645512.1_1	chr5	55290994	55299477	FLJ31104	+	lncRNA	chr5	55274075	55407156	AC008892.1	+	lncRNA	8483	same	7042_ID	chr5	55290995	55299477	8483	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5732	ENST00000500496.3_2	ENST00000559531.1_3	chr15	91203437	91208198	LINC01585	+	lncRNA	chr15	91163238	91260372	CRTC3-AS1	-	lncRNA	4761	opposite	7656_ID	chr15	91203438	91208198	4761	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5737	ENST00000501016.2_1	ENST00000518164.5_3	chr8	99053953	99056349	AP003352.1	+	lncRNA	chr8	99037078	99057776	RPL30	-	processed_transcript	2396	opposite	6247_ID	chr8	99053954	99056349	2396	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5766	ENST00000502437.1_3	ENST00000507997.1_1	chr5	95549049	95550779	AC099509.1	-	lncRNA	chr5	95385818	95551223	MIR583HG	+	lncRNA	1730	opposite	3371_ID	chr5	95549050	95550779	1730	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
5775	ENST00000502834.1_1	ENST00000332432.9_4	chr5	16129286	16141711	MARCHF11-AS1	+	lncRNA	chr5	16067247	16179900	MARCHF11	-	protein_coding	12425	opposite	7920_ID	chr5	16129287	16141711	12425	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5778	ENST00000502999.1_1	ENST00000512905.6_5	chr3	98241413	98244178	AC021660.2	+	lncRNA	chr3	98239976	98304342	AC021660.3	-	nonsense_mediated_decay	2765	opposite	1798_ID	chr3	98241414	98244178	2765	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5789	ENST00000503609.1_1	ENST00000660244.1_3	chr4	190802669	190806023	LINC01596	+	lncRNA	chr4	190685544	190861888	FRG1-DT	-	lncRNA	3354	opposite	7657_ID	chr4	190802670	190806023	3354	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5805	ENST00000504104.1_2	ENST00000666840.1_3	chr4	9364854	9366447	USP17L30	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12877_ID	chr4	9364855	9366447	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5808	ENST00000504209.1_3	ENST00000666840.1_3	chr4	9250355	9251948	USP17L18	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12863_ID	chr4	9250356	9251948	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5814	ENST00000504394.1_3	ENST00000661928.1_1	chr4	149862092	149863530	AC002460.1	-	lncRNA	chr4	149366918	149945776	AC002460.2	+	lncRNA	1475	opposite	54_ID	chr4	149862093	149863530	1438	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5816	ENST00000504481.1_3	ENST00000666840.1_3	chr4	9326890	9328483	USP17L24	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12870_ID	chr4	9326891	9328483	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5819	ENST00000504543.1_2	ENST00000666840.1_3	chr4	9350618	9352211	USP17L28	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12874_ID	chr4	9350619	9352211	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5831	ENST00000504874.1_1	ENST00000661928.1_1	chr4	149614183	149615475	AC108935.1	+	lncRNA	chr4	149366918	149945776	AC002460.2	+	lncRNA	1292	same	3750_ID	chr4	149614184	149615475	1292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5836	ENST00000504955.1_3	ENST00000510876.1_5	chr4	106667401	106748329	GSTCD-AS1	-	lncRNA	chr4	106621029	106817143	INTS12	-	protein_coding	80928	same	7193_ID	chr4	106667402	106748329	80928	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5837	ENST00000504970.1_1	ENST00000431862.1_3	chr1	159401993	159402928	OR10J4	+	polymorphic_pseudogene	chr1	159315955	159438858	AL513323.1	-	lncRNA	935	opposite	9349_ID	chr1	159401994	159402928	935	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5844	ENST00000505261.1_1	ENST00000512467.6_2	chr5	143748896	143764873	AC008652.1	+	lncRNA	chr5	143550436	143865249	KCTD16	+	protein_coding	15977	same	763_ID	chr5	143748897	143764873	15977	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5848	ENST00000505389.1_1	ENST00000513201.1_1	chr4	183066004	183111535	AC108142.1	+	lncRNA	chr4	183065139	183271469	TENM3	+	processed_transcript	45531	same	3726_ID	chr4	183066005	183111535	45531	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5872	ENST00000506151.1_3	ENST00000666840.1_3	chr4	9259849	9261442	USP17L20	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12866_ID	chr4	9259850	9261442	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5878	ENST00000506304.1_3	ENST00000296657.7_2	chr5	10627371	10628337	ANKRD33B-AS1	-	lncRNA	chr5	10564181	10657928	ANKRD33B	+	protein_coding	966	opposite	5950_ID	chr5	10627372	10628337	966	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5881	ENST00000506414.1_3	ENST00000666840.1_3	chr4	9264597	9266190	USP17L21	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12867_ID	chr4	9264598	9266190	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5895	ENST00000506619.2_3	ENST00000666840.1_3	chr4	9274089	9274640	USP17L23	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	551	opposite	12869_ID	chr4	9274090	9274640	551	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5903	ENST00000506911.1_1	ENST00000502471.5_4	chr5	137374887	137375668	AC113382.2	+	lncRNA	chr5	137354074	137387650	FAM13B	-	protein_coding	781	opposite	3852_ID	chr5	137374888	137375668	781	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5914	ENST00000507227.1_2	ENST00000666840.1_3	chr4	9341128	9342721	USP17L5	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12879_ID	chr4	9341129	9342721	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5916	ENST00000507298.1_3	ENST00000503106.5_2	chr5	66928093	66942617	LINC02242	-	lncRNA	chr5	66675205	67070862	AC112206.2	+	lncRNA	14524	opposite	7752_ID	chr5	66928094	66942617	14524	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5950	ENST00000508374.1_3	ENST00000511431.1_1	chr4	19748801	19756214	AC110767.1	-	lncRNA	chr4	19457058	19911315	AC024230.1	+	lncRNA	7413	opposite	3795_ID	chr4	19748802	19756214	7413	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5956	ENST00000508512.5_3	ENST00000503106.5_2	chr5	66759636	66771305	AC079467.1	-	lncRNA	chr5	66675205	67070862	AC112206.2	+	lncRNA	11784	opposite	2668_ID	chr5	66759637	66771305	11669	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
5973	ENST00000509271.1_3	ENST00000666840.1_3	chr4	9331636	9333229	USP17L25	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12871_ID	chr4	9331637	9333229	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5978	ENST00000509423.1_1	ENST00000666280.1_3	chr5	50746991	50757923	AC091860.2	+	lncRNA	chr5	50734625	50960882	AC022433.1	-	lncRNA	10932	opposite	3017_ID	chr5	50746992	50757923	10932	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5986	ENST00000509660.1_3	ENST00000666840.1_3	chr4	9336383	9337976	USP17L26	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12872_ID	chr4	9336384	9337976	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5999	ENST00000510150.1_1	ENST00000502684.1_1	chr5	174247029	174253327	AC113346.1	+	lncRNA	chr5	174178306	174277728	AC113346.2	+	lncRNA	6298	same	3848_ID	chr5	174247030	174253327	6298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6000	ENST00000510153.1_1	ENST00000650150.1_3	chr5	90522291	90522888	AC093281.2	-	lncRNA	chr5	90447027	90610219	LUCAT1	-	lncRNA	597	same	3192_ID	chr5	90522292	90522888	597	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6005	ENST00000510242.1_1	ENST00000509456.2_3	chr5	124204664	124205607	AC109464.2	-	lncRNA	chr5	124144673	124258043	LINC02240	+	lncRNA	943	opposite	3768_ID	chr5	124204665	124205607	943	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6028	ENST00000511091.1_1	ENST00000509456.2_3	chr5	124165164	124165983	AC109464.1	+	lncRNA	chr5	124144673	124258043	LINC02240	+	lncRNA	819	same	3767_ID	chr5	124165165	124165983	819	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6030	ENST00000511280.1_3	ENST00000666840.1_3	chr4	9269344	9270937	USP17L22	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12868_ID	chr4	9269345	9270937	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6036	ENST00000511330.1_1	ENST00000508328.6_2	chr4	58020742	58022618	AC105390.1	+	lncRNA	chr4	57975945	58073625	IGFBP7-AS1	+	lncRNA	1876	same	3618_ID	chr4	58020743	58022618	1876	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6042	ENST00000511568.1_3	ENST00000666840.1_3	chr4	9245604	9247197	USP17L17	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12862_ID	chr4	9245605	9247197	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6049	ENST00000511681.1_2	ENST00000666840.1_3	chr4	9355363	9356956	USP17L29	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12875_ID	chr4	9355364	9356956	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6053	ENST00000511749.1_1	ENST00000513332.5_3	chr4	137047063	137060029	AC073429.1	+	lncRNA	chr4	137039829	137202449	AC018680.1	-	lncRNA	12966	opposite	2526_ID	chr4	137047064	137060029	12966	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6058	ENST00000511893.1_1	ENST00000324453.13_4	chr7	30197146	30199150	AC007036.3	+	lncRNA	chr7	30174601	30202378	MTURN	+	protein_coding	2004	same	499_ID	chr7	30197147	30199150	2004	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
6062	ENST00000511929.2_3	ENST00000500853.1_1	chr8	23082745	23088428	AC100861.2	-	lncRNA	chr8	23082733	23088439	AC100861.1	+	lncRNA	5683	opposite	3443_ID	chr8	23082746	23088428	5683	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
6067	ENST00000512047.2_2	ENST00000666840.1_3	chr4	9172134	9178456	FAM90A26	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	6322	opposite	6999_ID	chr4	9172135	9178456	6322	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6086	ENST00000512511.2_1	ENST00000542998.5_1	chr12	4948120	4951841	AC006063.1	+	lncRNA	chr12	4872509	4960169	GALNT8	+	protein_coding	3721	same	408_ID	chr12	4948121	4951841	3721	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6090	ENST00000512546.1_1	ENST00000651732.1_3	chr4	60018551	60041864	AC108517.1	+	lncRNA	chr4	60016641	60046132	AC108517.2	-	lncRNA	23313	opposite	3742_ID	chr4	60018552	60041864	23313	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
6113	ENST00000513422.1_1	ENST00000656386.1_1	chr5	123795604	123796242	AC025465.4	-	lncRNA	chr5	123787969	123796245	AC025465.2	+	lncRNA	638	opposite	2091_ID	chr5	123795605	123796242	638	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	3	3
6114	ENST00000513540.1_1	ENST00000508572.1_1	chr4	66868998	66882510	AC096721.1	+	lncRNA	chr4	66864563	67015730	AC116049.1	+	lncRNA	13512	same	3291_ID	chr4	66868999	66882510	13512	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6123	ENST00000513770.1_3	ENST00000513238.5_3	chr4	75919086	75960034	AC110760.1	-	lncRNA	chr4	75858304	75975325	PARM1	+	protein_coding	40948	opposite	3794_ID	chr4	75919087	75960034	40948	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
6138	ENST00000514239.1_1	ENST00000650150.1_3	chr5	90519235	90519784	AC093281.1	+	lncRNA	chr5	90447027	90610219	LUCAT1	-	lncRNA	549	opposite	3191_ID	chr5	90519236	90519784	549	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6158	ENST00000514827.2_2	ENST00000377154.1_3	chr6	29382704	29386682	OR12D1	+	polymorphic_pseudogene	chr6	29323006	29399744	OR5V1	-	protein_coding	3978	opposite	9350_ID	chr6	29382705	29386682	3978	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6183	ENST00000515566.1_3	ENST00000666840.1_3	chr4	9255103	9256696	USP17L19	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12864_ID	chr4	9255104	9256696	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6184	ENST00000515574.1_2	ENST00000666840.1_3	chr4	9345873	9347466	USP17L27	+	protein_coding	chr4	9036244	9382995	AC108519.1	-	lncRNA	1593	opposite	12873_ID	chr4	9345874	9347466	1593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6198	ENST00000515898.1	ENST00000603385.2_2	chrX	53159662	53159723	RNU7-37P	+	snRNA	chrX	53123329	53200096	KANTR	+	processed_transcript	61	same	11776_ID	chrX	53159663	53159723	61	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6200	ENST00000515901.1	ENST00000520327.6_2	chr5	153472863	153472939	AC010295.1	-	miRNA	chr5	153418527	153541095	MFAP3	+	processed_transcript	76	opposite	1049_ID	chr5	153472864	153472939	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6224	ENST00000515946.1	ENST00000664054.1_3	chr4	33786556	33786615	RNU7-131P	+	snRNA	chr4	33777119	34041536	AC016687.3	-	lncRNA	59	opposite	11718_ID	chr4	33786557	33786615	59	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6270	ENST00000516103.1	ENST00000336769.9_1	chr22	49210131	49210216	AL954742.1	-	miRNA	chr22	48885403	49246724	TAFA5	+	protein_coding	85	opposite	5924_ID	chr22	49210132	49210216	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6302	ENST00000516195.2	ENST00000434418.2_3	chr2	188607313	188607401	AC068718.2	-	miRNA	chr2	188577542	189152418	LINC01090	-	lncRNA	88	same	2434_ID	chr2	188607314	188607401	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6303	ENST00000516196.1	ENST00000649962.1_3	chr1	74349395	74349505	RNU4ATAC8P	+	snRNA	chr1	74253052	74380998	AL591463.1	-	lncRNA	110	opposite	10733_ID	chr1	74349396	74349505	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6337	ENST00000516284.1	ENST00000517739.1_1	chr8	122081627	122081814	AC011626.1	+	miRNA	chr8	121925304	122131994	AC068413.1	+	lncRNA	187	same	1275_ID	chr8	122081628	122081814	187	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6350	ENST00000516326.1	ENST00000445753.1	chr1	143670467	143670602	RNVU1-2	-	snRNA	chr1	143647638	143744410	RP6-206I17.1	-	lincRNA	135	same	11825_ID	chr1	143670468	143670602	135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6360	ENST00000516353.1	ENST00000643167.1_1	chr1	55864186	55864293	RNU6-830P	+	snRNA	chr1	55794960	56298241	AL603840.1	+	lncRNA	107	same	11537_ID	chr1	55864187	55864293	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6362	ENST00000516363.1	ENST00000481585.1_3	chr3	149635128	149635236	RNU6-720P	-	snRNA	chr3	149498062	149686172	ANKUB1	-	processed_transcript	108	same	11452_ID	chr3	149635129	149635236	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6367	ENST00000516376.1	ENST00000509185.2_3	chr5	126091007	126091109	RNU6-752P	-	snRNA	chr5	126087654	126112178	LMNB1-DT	-	lncRNA	102	same	11476_ID	chr5	126091008	126091109	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6374	ENST00000516403.1	ENST00000330137.12_4	chr17	57206636	57206819	RNU2-58P	-	snRNA	chr17	57187217	57232547	SKA2	-	protein_coding	183	same	10646_ID	chr17	57206637	57206819	183	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6381	ENST00000516415.1	ENST00000654325.1_3	chr9	33174167	33174293	RNU4ATAC15P	+	snRNA	chr9	33166945	33182863	B4GALT1-AS1	+	lncRNA	126	same	10724_ID	chr9	33174168	33174293	126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6391	ENST00000516460.1	ENST00000328654.10_4	chr12	133571775	133571888	RNU4ATAC12P	-	snRNA	chr12	133562952	133603688	ZNF26	+	protein_coding	113	opposite	10723_ID	chr12	133571776	133571888	113	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6406	ENST00000516502.1	ENST00000435200.2_3	chr16	85815380	85815505	RNU1-103P	-	snRNA	chr16	85812229	85833214	EMC8	-	protein_coding	125	same	10550_ID	chr16	85815381	85815505	125	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6436	ENST00000516582.1	ENST00000589296.5_3	chr17	76692775	76692879	RNU6-638P	-	snRNA	chr17	76670129	76778379	CYTH1	-	protein_coding	104	same	11397_ID	chr17	76692776	76692879	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6464	ENST00000516668.1	ENST00000649950.1_1	chr15	98569270	98569368	RNU6-134P	+	snRNA	chr15	98546318	98630613	LINC02251	+	lncRNA	98	same	11023_ID	chr15	98569271	98569368	98	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6468	ENST00000516674.1	ENST00000439794.6_1	chr17	20797844	20797951	RNU6-1178P	-	snRNA	chr17	20771809	20897455	CCDC144NL-AS1	+	lncRNA	107	opposite	10882_ID	chr17	20797845	20797951	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6482	ENST00000516723.1	ENST00000652684.1_4	chr10	43953512	43953577	RNU7-193P	+	snRNA	chr10	43932295	43978629	ZNF487	+	protein_coding	65	same	11757_ID	chr10	43953513	43953577	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6504	ENST00000516784.1	ENST00000519630.1_1	chr8	103545468	103545567	RNU6-1224P	-	snRNA	chr8	103540967	103550896	AP002852.1	+	lncRNA	99	opposite	10924_ID	chr8	103545469	103545567	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6537	ENST00000516890.1	ENST00000394333.5_3	chr17	37007776	37007912	SNORA21	-	snoRNA	chr17	37004117	37009988	RPL23	-	protein_coding	1471	same	12162_ID	chr17	37007777	37007912	136	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6588	ENST00000517018.1	ENST00000548740.1_3	chr12	96820977	96821264	RN7SKP11	-	misc_RNA	chr12	96816103	96879220	AC007513.1	-	lncRNA	287	same	9765_ID	chr12	96820978	96821264	287	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6589	ENST00000517022.1	ENST00000443800.5_1	chr5	141913819	141913910	AC005215.1	-	miRNA	chr5	141783765	142051566	SPRY4-AS1	+	lncRNA	91	opposite	251_ID	chr5	141913820	141913910	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6594	ENST00000517038.1	ENST00000433656.2_4	chr9	98622185	98622298	RNU2-46P	+	snRNA	chr9	98521512	98637762	LINC00476	-	lncRNA	113	opposite	10640_ID	chr9	98622186	98622298	113	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6602	ENST00000517058.1	ENST00000658670.1_1	chr5	28624763	28624870	RNU6-909P	+	snRNA	chr5	28614719	28654638	AC109472.1	+	lncRNA	107	same	11605_ID	chr5	28624764	28624870	107	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
6610	ENST00000517075.1	ENST00000656157.1_1	chr8	81317750	81317844	RNU6-1213P	+	snRNA	chr8	81178141	81396716	AC034114.2	+	lncRNA	94	same	10915_ID	chr8	81317751	81317844	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6612	ENST00000517077.1	ENST00000537366.5_3	chr12	120068894	120069191	RN7SKP197	-	misc_RNA	chr12	119825791	120105884	AC002070.1	-	lncRNA	297	same	9816_ID	chr12	120068895	120069191	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6616	ENST00000517083.1	ENST00000653778.1_3	chr2	65221879	65221994	RNU6-548P	+	snRNA	chr2	65129438	65283302	LINC02245	-	lncRNA	115	opposite	11329_ID	chr2	65221880	65221994	115	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6621	ENST00000517099.1	ENST00000606445.1_1	chr5	17240719	17240824	RNU6-1003P	+	snRNA	chr5	17065706	17275462	BASP1	+	protein_coding	105	same	10758_ID	chr5	17240720	17240824	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6624	ENST00000517103.1	ENST00000612728.4_1	chr17	34847042	34847166	RNA5SP439	-	rRNA	chr17	34842521	34855154	ZNHIT3	+	processed_transcript	124	opposite	10521_ID	chr17	34847043	34847166	124	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6633	ENST00000517126.1	ENST00000669183.1_3	chr8	79310749	79310857	RNU6-1220P	-	snRNA	chr8	79180871	79420720	PKIA-AS1	-	lncRNA	108	same	10920_ID	chr8	79310750	79310857	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6641	ENST00000517159.1	ENST00000443800.5_1	chr5	142029564	142029647	AC005370.1	-	miRNA	chr5	141783765	142051566	SPRY4-AS1	+	lncRNA	83	opposite	286_ID	chr5	142029565	142029647	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6648	ENST00000517169.1	ENST00000636971.1_1	chrX	20470225	20470549	RN7SKP183	+	misc_RNA	chrX	20461443	20510467	AL807740.1	+	lncRNA	324	same	9809_ID	chrX	20470226	20470549	324	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6657	ENST00000517199.2	ENST00000309446.11_4	chr2	207974710	207974797	MIR2355	-	miRNA	chr2	207938860	208030672	KLF7	-	protein_coding	87	same	8199_ID	chr2	207974711	207974797	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6662	ENST00000517211.1	ENST00000434257.1_3	chr3	174349612	174349892	RN7SKP40	+	misc_RNA	chr3	174158776	174814932	NAALADL2	+	protein_coding	280	same	9895_ID	chr3	174349613	174349892	280	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6674	ENST00000517228.1	ENST00000658720.1_1	chr6	109825589	109825729	AL109947.2	+	miRNA	chr6	109804840	109827975	AL109947.1	+	lncRNA	140	same	4715_ID	chr6	109825590	109825729	140	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6690	ENST00000517260.1	ENST00000264498.8_2	chr4	123748168	123748245	AC021205.1	+	miRNA	chr4	123747862	123819391	FGF2	+	protein_coding	77	same	1782_ID	chr4	123748169	123748245	77	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	3
6702	ENST00000517278.1	ENST00000460895.5_1	chr3	134499368	134499469	RNU6-1174P	-	snRNA	chr3	134334206	134670493	EPHB1	+	protein_coding	101	opposite	10878_ID	chr3	134499369	134499469	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6732	ENST00000517998.1_1	ENST00000399300.6_4	chr8	94745443	94746250	AC010834.1	+	lncRNA	chr8	94741583	94753245	RBM12B	-	protein_coding	807	opposite	1151_ID	chr8	94745444	94746250	807	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
6739	ENST00000518149.5_5	ENST00000634305.1_1	chr14	36985621	36990354	NKX2-1	-	protein_coding	chr14	36789958	37125368	AL132857.1	+	lncRNA	4758	opposite	9267_ID	chr14	36985622	36990354	4733	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6753	ENST00000518489.1_3	ENST00000520862.5_1	chr8	62734039	62737811	AC025524.1	-	lncRNA	chr8	62697605	62765324	LINC02842	+	lncRNA	3772	opposite	2094_ID	chr8	62734040	62737811	3772	*	-	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6754	ENST00000518507.1_3	ENST00000544451.2_3	chr8	52808516	52808934	AC103769.1	-	lncRNA	chr8	52730134	52811746	PCMTD1	-	protein_coding	418	same	3467_ID	chr8	52808517	52808934	418	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6761	ENST00000518589.1_3	ENST00000520255.5_2	chr8	9112858	9117805	AC022784.3	-	lncRNA	chr8	9107113	9271224	AC022784.1	+	lncRNA	4947	opposite	1905_ID	chr8	9112859	9117805	4947	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6765	ENST00000518620.1_3	ENST00000522575.1_1	chr8	49569819	49571454	AC022915.3	-	lncRNA	chr8	49464126	49611069	AC022915.2	+	lncRNA	1635	opposite	1917_ID	chr8	49569820	49571454	1635	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6771	ENST00000518861.1_3	ENST00000504861.2_3	chr8	93735251	93737339	AC104211.2	-	lncRNA	chr8	93725189	93889865	FLJ46284	-	lncRNA	2088	same	3517_ID	chr8	93735252	93737339	2088	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6773	ENST00000518933.1_3	ENST00000663819.1_1	chr5	151775058	151812929	NMUR2	-	processed_transcript	chr5	151754591	152105720	AC008571.2	+	lncRNA	41823	opposite	9275_ID	chr5	151775059	151812929	37871	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6779	ENST00000519215.1_1	ENST00000518593.5_1	chr8	62802397	62806765	LINC02155	+	lncRNA	chr8	62737906	62856739	LINC02842	+	lncRNA	4368	same	7737_ID	chr8	62802398	62806765	4368	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6780	ENST00000519337.1_1	ENST00000517581.1_3	chr8	103866682	103868303	AP003696.1	+	lncRNA	chr8	103862226	103906092	AZIN1	-	processed_transcript	1621	opposite	6270_ID	chr8	103866683	103868303	1621	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6789	ENST00000519605.1_1	ENST00000659453.1_3	chr8	20811522	20826415	AC015468.2	+	lncRNA	chr8	20809979	21155679	AC021613.1	-	lncRNA	14893	opposite	1464_ID	chr8	20811523	20826415	14893	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6821	ENST00000520760.1_3	ENST00000522706.5_3	chr8	675187	675877	AC100797.1	-	lncRNA	chr8	564745	681197	ERICH1	-	protein_coding	690	same	3418_ID	chr8	675188	675877	690	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6839	ENST00000521113.1_3	ENST00000520044.5_3	chr8	67579849	67597799	C8orf44	+	lncRNA	chr8	67579830	67706068	C8orf44-SGK3	+	protein_coding	17950	same	6522_ID	chr8	67579850	67597799	17950	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
6840	ENST00000521143.1_3	ENST00000520255.5_2	chr8	9208747	9215951	AC021736.1	-	lncRNA	chr8	9107113	9271224	AC022784.1	+	lncRNA	7204	opposite	1802_ID	chr8	9208748	9215951	7204	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6841	ENST00000521292.2_1	ENST00000634305.1_1	chr14	36988482	36992221	NKX2-1-AS1	+	lncRNA	chr14	36789958	37125368	AL132857.1	+	lncRNA	3739	same	9268_ID	chr14	36988483	36992221	3739	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6847	ENST00000521482.5_1	ENST00000314393.6_2	chr8	123819984	123828756	AC016405.1	+	lncRNA	chr8	123793893	123986750	ZHX2	+	protein_coding	8772	same	1529_ID	chr8	123819985	123828756	8772	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6850	ENST00000521660.1_1	ENST00000522575.1_1	chr8	49533024	49536455	AC022915.1	+	lncRNA	chr8	49464126	49611069	AC022915.2	+	lncRNA	3431	same	1916_ID	chr8	49533025	49536455	3431	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6859	ENST00000521930.1_1	ENST00000656976.1_3	chr8	54427729	54428465	AC022034.4	+	lncRNA	chr8	54406082	54436524	AC022034.1	-	lncRNA	736	opposite	1816_ID	chr8	54427730	54428465	736	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6864	ENST00000522106.5_3	ENST00000665380.1_1	chr8	65713792	65730130	AC104232.1	-	lncRNA	chr8	65711360	65774605	AC104232.3	+	lncRNA	16338	opposite	3518_ID	chr8	65713793	65730130	16338	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
6870	ENST00000522330.1_3	ENST00000653400.1_3	chr8	112191421	112192101	AC009930.1	-	lncRNA	chr8	112105492	112248427	LINC01609	-	lncRNA	680	same	1004_ID	chr8	112191422	112192101	680	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6882	ENST00000522604.1_1	ENST00000659453.1_3	chr8	20831496	20852630	LINC02153	+	lncRNA	chr8	20809979	21155679	AC021613.1	-	lncRNA	23099	opposite	7736_ID	chr8	20831497	20852630	21134	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6895	ENST00000523035.1_1	ENST00000659453.1_3	chr8	20811152	20826415	AC015468.1	+	lncRNA	chr8	20809979	21155679	AC021613.1	-	lncRNA	15778	opposite	1463_ID	chr8	20811153	20826415	15263	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
6896	ENST00000523038.1_3	ENST00000522575.1_1	chr8	49510017	49533578	LINC02847	-	lncRNA	chr8	49464126	49611069	AC022915.2	+	lncRNA	23561	opposite	7806_ID	chr8	49510018	49533578	23561	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6899	ENST00000523103.1_1	ENST00000381569.5_5	chr8	20133283	20147969	LZTS1-AS1	+	lncRNA	chr8	20103675	20161474	LZTS1	-	protein_coding	14686	opposite	7896_ID	chr8	20133284	20147969	14686	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6929	ENST00000524017.1_1	ENST00000670110.1_1	chr8	31196712	31201945	AC068672.3	+	lncRNA	chr8	31133130	31248321	AC068672.2	+	lncRNA	7283	same	2433_ID	chr8	31196713	31201945	5233	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6931	ENST00000524133.1_3	ENST00000523081.2_4	chr8	41397899	41402563	AC009630.2	-	lncRNA	chr8	41367111	41435940	AC009630.1	-	lncRNA	4664	same	980_ID	chr8	41397900	41402563	4664	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
6937	ENST00000524422.1_1	ENST00000649464.1_1	chr11	118272346	118302211	ATP5MG	+	protein_coding	chr11	118272316	118320284	AP001267.5	+	protein_coding	29891	same	6375_ID	chr11	118272347	118302211	29865	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	3
6940	ENST00000524441.2_4	ENST00000533008.1_1	chr11	74109869	74127424	AP001085.1	+	lncRNA	chr11	74108697	74196787	AP001372.1	+	lncRNA	17555	same	6091_ID	chr11	74109870	74127424	17555	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
6942	ENST00000524482.5_1	ENST00000530451.1_3	chr11	64889654	64894828	MRPL49	+	processed_transcript	chr11	64889251	64897458	SYVN1	-	retained_intron	5189	opposite	9165_ID	chr11	64889655	64894828	5174	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
6964	ENST00000525984.2_3	ENST00000665326.1_1	chr11	112404942	112426525	LINC02764	-	lncRNA	chr11	112263896	112495290	LINC02763	+	lncRNA	21583	opposite	7797_ID	chr11	112404943	112426525	21583	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
6968	ENST00000526131.1_3	ENST00000335397.3_2	chr11	57811581	57827610	AP004247.2	-	lncRNA	chr11	57791352	57949088	OR9Q1	+	protein_coding	16029	opposite	6278_ID	chr11	57811582	57827610	16029	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
6976	ENST00000526387.5_1	ENST00000546202.5_6	chr11	67171385	67177560	TBC1D10C	+	protein_coding	chr11	67168325	67188652	PPP1CA	-	processed_transcript	6175	opposite	12628_ID	chr11	67171386	67177560	6175	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7001	ENST00000527012.1_1	ENST00000532481.5_1	chr11	77561649	77562557	AP002812.3	+	lncRNA	chr11	77532154	77629478	AAMDC	+	protein_coding	908	same	6207_ID	chr11	77561650	77562557	908	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7015	ENST00000527434.1_1	ENST00000568710.1_3	chr16	72909	75123	WASIR2	+	lncRNA	chr16	67513	85195	Z84723.1	-	lncRNA	2214	opposite	12905_ID	chr16	72910	75123	2214	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7046	ENST00000528542.6_7	ENST00000532946.1_3	chr11	827577	831986	CRACR2B	+	protein_coding	chr11	823633	832883	AP006621.1	-	lncRNA	5848	opposite	6711_ID	chr11	827578	831986	4409	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
7069	ENST00000529369.1_1	ENST00000527452.1_6	chr11	71159719	71163203	AP002387.1	+	lncRNA	chr11	71155086	71163914	DHCR7	-	protein_coding	3484	opposite	6185_ID	chr11	71159720	71163203	3484	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7083	ENST00000529983.3_3	ENST00000548729.5_6	chr12	89913188	89918573	GALNT4	-	protein_coding	chr12	89913184	89919975	POC1B-GALNT4	-	protein_coding	5385	same	7101_ID	chr12	89913189	89918573	5385	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
7088	ENST00000530101.5_1	ENST00000527752.1_3	chr11	65601449	65624367	SNX32	+	retained_intron	chr11	65590492	65625628	CFL1	-	processed_transcript	23063	opposite	12481_ID	chr11	65601450	65624367	22918	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7092	ENST00000530210.1_2	ENST00000532852.5_6	chr11	71589498	71595607	DEFB131B	+	protein_coding	chr11	71576554	71630003	AP002495.1	-	protein_coding	6109	opposite	6787_ID	chr11	71589499	71595607	6109	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7094	ENST00000530350.2_3	ENST00000664854.1_3	chr8	123497753	123502054	AC108136.1	-	lncRNA	chr8	123497432	123706329	LINC01151	-	lncRNA	4301	same	3725_ID	chr8	123497754	123502054	4301	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7096	ENST00000530435.1_3	ENST00000304771.7_3	chr11	75346927	75349632	AP001922.2	-	lncRNA	chr11	75297962	75380165	MAP6	-	protein_coding	2705	same	6166_ID	chr11	75346928	75349632	2705	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7097	ENST00000530447.5_4	ENST00000434078.3_2	chr8	11989925	11991608	USP17L7	-	protein_coding	chr8	11973290	12035059	FAM66D	+	lncRNA	1683	opposite	12880_ID	chr8	11989926	11991608	1683	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7101	ENST00000530510.1_1	ENST00000310128.9_5	chr11	74166392	74167870	AP001372.3	+	lncRNA	chr11	74165885	74178594	KCNE3	-	protein_coding	1478	opposite	6125_ID	chr11	74166393	74167870	1478	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
7102	ENST00000530510.1_1	ENST00000533008.1_1	chr11	74166392	74167870	AP001372.3	+	lncRNA	chr11	74108697	74196787	AP001372.1	+	lncRNA	1478	same	6126_ID	chr11	74166393	74167870	1478	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7103	ENST00000530512.3_1	ENST00000332272.9_4	chr16	75509793	75529305	AC009163.1	+	lncRNA	chr16	75505949	75529339	CHST6	-	protein_coding	19512	opposite	913_ID	chr16	75509794	75529305	19512	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	3
7134	ENST00000531565.1_1	ENST00000527561.5_2	chr8	144778323	144780583	LINC02878	+	lncRNA	chr8	144766653	144794907	ZNF707	+	nonsense_mediated_decay	2260	same	7814_ID	chr8	144778324	144780583	2260	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7137	ENST00000531638.1_1	ENST00000472458.5_1	chr14	21500976	21502054	AL161668.2	+	lncRNA	chr14	21498429	21504433	TPPP2	+	protein_coding	1078	same	5157_ID	chr14	21500977	21502054	1078	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7161	ENST00000532454.1_3	ENST00000335987.8_4	chr11	65556521	65558339	OVOL1-AS1	-	lncRNA	chr11	65554533	65564685	OVOL1	+	protein_coding	1818	opposite	9484_ID	chr11	65556522	65558339	1818	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7164	ENST00000532553.1_4	ENST00000304771.7_3	chr11	75307188	75308315	AP001922.6	-	lncRNA	chr11	75297962	75380165	MAP6	-	protein_coding	1127	same	6168_ID	chr11	75307189	75308315	1127	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7171	ENST00000532830.5_3	ENST00000622583.4_1	chr11	67119018	67124443	POLD4	-	protein_coding	chr11	67085341	67158905	RAD9A	+	processed_transcript	6201	opposite	9593_ID	chr11	67119019	67124443	5425	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7200	ENST00000533876.1_1	ENST00000333139.3_3	chr11	67372991	67374113	AP003385.3	+	lncRNA	chr11	67370350	67374177	C11orf72	-	lncRNA	1122	opposite	6250_ID	chr11	67372992	67374113	1122	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
7201	ENST00000533938.1_1	ENST00000525941.1_1	chr11	781644	782105	AP006621.2	+	lncRNA	chr11	777607	784297	AP006621.3	+	lncRNA	461	same	6318_ID	chr11	781645	782105	461	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7224	ENST00000535401.5_1	ENST00000544925.1_3	chr11	114128552	114184007	NNMT	+	protein_coding	chr11	114081337	114227293	AP002518.2	-	lncRNA	55750	opposite	9277_ID	chr11	114128553	114184007	55455	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
7228	ENST00000535714.2_5	ENST00000559468.1_3	chr15	99511457	99551021	PGPEP1L	-	protein_coding	chr15	99497377	99646030	AC036108.1	-	lncRNA	39564	same	9545_ID	chr15	99511458	99551021	39564	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7233	ENST00000535893.1_1	ENST00000614342.1_5	chr14	21989233	21990794	AL161747.2	+	lncRNA	chr14	21989231	22005350	SALL2	-	protein_coding	1561	opposite	5169_ID	chr14	21989234	21990794	1561	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	3
7240	ENST00000536441.7_5	ENST00000657854.1_1	chr11	94898676	94964366	SESN3	-	protein_coding	chr11	94884862	94967555	AP000787.1	+	lncRNA	67029	opposite	12042_ID	chr11	94898677	94964366	65690	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7243	ENST00000536786.1_3	ENST00000536558.5_3	chr12	22548021	22551009	AC087318.1	-	lncRNA	chr12	22477345	22589975	ST8SIA1	-	processed_transcript	2988	same	2806_ID	chr12	22548022	22551009	2988	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7265	ENST00000538067.1_1	ENST00000305108.9_4	chr12	699798	700435	AC006205.1	+	lncRNA	chr12	673461	772945	NINJ2	-	protein_coding	637	opposite	434_ID	chr12	699799	700435	637	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7271	ENST00000538416.1_3	ENST00000266458.10_2	chr12	10366759	10367360	GABARAPL1-AS1	-	lncRNA	chr12	10365475	10375727	GABARAPL1	+	protein_coding	601	opposite	7095_ID	chr12	10366760	10367360	601	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7280	ENST00000538943.1_3	ENST00000305108.9_4	chr12	695030	695652	AC006205.2	-	lncRNA	chr12	673461	772945	NINJ2	-	protein_coding	622	same	435_ID	chr12	695031	695652	622	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7285	ENST00000539261.6_4	ENST00000527783.1_1	chr12	15033797	15038788	MGP	-	protein_coding	chr12	14956610	15059520	C12orf60	+	processed_transcript	4994	opposite	7947_ID	chr12	15033798	15038788	4991	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7291	ENST00000539552.1	ENST00000540392.1_3	chr12	26468647	26470746	RP11-612B6.1	+	lincRNA	chr12	26364096	26488789	AC022509.2	-	lncRNA	2099	opposite	11923_ID	chr12	26468648	26470746	2099	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7349	ENST00000543494.1_3	ENST00000622583.4_1	chr11	67119042	67141055	AP003419.1	-	protein_coding	chr11	67085341	67158905	RAD9A	+	processed_transcript	22013	opposite	6254_ID	chr11	67119043	67141055	22013	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7351	ENST00000543527.1_3	ENST00000381271.7_2	chr12	27951573	27953641	AC009511.1	-	lncRNA	chr12	27933165	27955973	KLHL42	+	protein_coding	2068	opposite	967_ID	chr12	27951574	27953641	2068	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
7354	ENST00000543604.1_3	ENST00000661495.1_1	chr12	22613452	22616848	AC053513.2	-	lncRNA	chr12	22562170	22771802	AC053513.1	+	lncRNA	3396	opposite	2325_ID	chr12	22613453	22616848	3396	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7391	ENST00000545664.5_3	ENST00000586572.1_7	chr19	2732201	2740015	SLC39A3	-	protein_coding	chr19	2717766	2740046	AC006538.2	-	protein_coding	7825	same	12098_ID	chr19	2732202	2740015	7814	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
7394	ENST00000545750.2_2	ENST00000537250.5_3	chr12	65950704	65954669	AC090023.1	+	lncRNA	chr12	65860599	66035978	AC025419.1	-	lncRNA	3965	opposite	2865_ID	chr12	65950705	65954669	3965	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7395	ENST00000545819.1_3	ENST00000534829.5_1	chr12	26278245	26279550	AC022509.3	-	lncRNA	chr12	26274984	26452223	SSPN	+	processed_transcript	1463	opposite	1875_ID	chr12	26278246	26279550	1305	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7425	ENST00000546983.2_4	ENST00000634305.1_1	chr14	36942492	36990354	SFTA3	-	nonsense_mediated_decay	chr14	36789958	37125368	AL132857.1	+	lncRNA	47943	opposite	12048_ID	chr14	36942493	36990354	47862	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7431	ENST00000547042.1_3	ENST00000540093.2_5	chr12	2906301	2913104	AC005841.1	-	lncRNA	chr12	2851791	2922068	ITFG2-AS1	-	lncRNA	6803	same	373_ID	chr12	2906302	2913104	6803	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7433	ENST00000547093.1_3	ENST00000550005.1_3	chr14	32022563	32027704	AL163973.3	-	lncRNA	chr14	31959161	32031403	NUBPL	+	protein_coding	5141	opposite	5232_ID	chr14	32022564	32027704	5141	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7456	ENST00000548096.1_3	ENST00000550005.1_3	chr14	32027712	32030540	AL163973.2	-	lncRNA	chr14	31959161	32031403	NUBPL	+	protein_coding	2828	opposite	5231_ID	chr14	32027713	32030540	2828	*	-	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7466	ENST00000548577.1	ENST00000572547.1_3	chr17	6915735	6917851	RNASEK	+	protein_coding	chr17	6888812	6922733	AC040977.2	-	lncRNA	2116	opposite	10536_ID	chr17	6915736	6917851	2116	*	+	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7469	ENST00000548617.1_1	ENST00000550474.5_1	chr12	54822086	54823187	LINC01154	+	lncRNA	chr12	54747444	54891472	AC079313.2	+	lncRNA	1101	same	7611_ID	chr12	54822087	54823187	1101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7473	ENST00000548801.1_1	ENST00000465846.6_1	chr17	46656991	46659621	AC103702.1	-	lncRNA	chr17	46626991	46679694	HOXB-AS3	+	lncRNA	2630	opposite	3458_ID	chr17	46656992	46659621	2630	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7478	ENST00000549023.2_3	ENST00000541364.5_1	chr12	49626572	49658539	AC010173.1	-	lncRNA	chr12	49621708	49667117	TUBA1C	+	protein_coding	31967	opposite	1028_ID	chr12	49626573	49658539	31967	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7508	ENST00000550287.1_3	ENST00000551065.5_1	chr12	94101566	94131599	AC012085.2	-	lncRNA	chr12	94071174	94288616	CRADD	+	nonsense_mediated_decay	30033	opposite	1330_ID	chr12	94101567	94131599	30033	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7523	ENST00000551257.1_1	ENST00000551065.5_1	chr12	94229942	94231814	AC012464.2	+	lncRNA	chr12	94071174	94288616	CRADD	+	nonsense_mediated_decay	1872	same	1391_ID	chr12	94229943	94231814	1872	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7527	ENST00000551408.2_3	ENST00000554725.1_1	chr14	57533725	57579378	AL391152.1	-	lncRNA	chr14	57279988	57618895	OTX2-AS1	+	lncRNA	46401	opposite	5572_ID	chr14	57533726	57579378	45653	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7563	ENST00000553095.1_1	ENST00000670743.1_4	chr12	96196874	96217085	LINC02410	+	lncRNA	chr12	96185510	96252604	AC090001.1	-	lncRNA	20211	opposite	7772_ID	chr12	96196875	96217085	20211	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7566	ENST00000553174.1_1	ENST00000649637.2_4	chr12	49483990	49486984	AC011603.1	+	lncRNA	chr12	49480438	49488584	DHH	-	protein_coding	3105	opposite	1269_ID	chr12	49483991	49486984	2994	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
7575	ENST00000553477.1_3	ENST00000663183.1_1	chr15	94380839	94396210	AC103996.3	-	lncRNA	chr15	94378718	94422051	LINC02207	+	lncRNA	15371	opposite	3496_ID	chr15	94380840	94396210	15371	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7576	ENST00000553603.1_3	ENST00000553560.5_1	chr14	52433720	52436518	AL358333.3	-	lncRNA	chr14	52313843	52446060	GNG2	+	protein_coding	2798	opposite	5450_ID	chr14	52433721	52436518	2798	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	3	3
7582	ENST00000553678.1_1	ENST00000669085.1_3	chr14	85994942	85995730	AL049775.3	+	lncRNA	chr14	85985214	85996422	AL049775.1	-	lncRNA	788	opposite	4633_ID	chr14	85994943	85995730	788	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
7592	ENST00000553996.2_3	ENST00000555070.1_3	chr14	90095264	90109015	AL137230.1	-	lncRNA	chr14	89878655	90421003	AL137230.2	-	lncRNA	13751	same	4948_ID	chr14	90095265	90109015	13751	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7598	ENST00000554042.1_1	ENST00000557251.1_1	chr14	42881775	42998091	AL450442.1	+	lncRNA	chr14	42832185	43172858	AL442163.1	+	lncRNA	116316	same	5661_ID	chr14	42881776	42998091	116316	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7608	ENST00000554360.5_3	ENST00000554218.1_3	chr14	58732082	58764847	PSMA3-AS1	-	lncRNA	chr14	58605818	58764857	ARMH4	-	processed_transcript	32770	same	9668_ID	chr14	58732083	58764847	32765	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
7614	ENST00000554548.1_3	ENST00000654071.1_3	chr14	53259592	53286752	AL139317.1	-	lncRNA	chr14	53258473	53396903	AL139317.5	+	lncRNA	27160	opposite	5033_ID	chr14	53259593	53286752	27160	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7635	ENST00000555325.1_3	ENST00000557398.2_3	chr15	93348999	93351797	AC106028.2	-	lncRNA	chr15	93162531	93353028	FAM174B	-	protein_coding	2798	same	3628_ID	chr15	93349000	93351797	2798	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7641	ENST00000555460.3_3	ENST00000656379.1_3	chr14	22884356	22887647	AC244502.3	+	lncRNA	chr14	22665339	22901726	AC244502.1	-	lncRNA	3291	opposite	4291_ID	chr14	22884357	22887647	3291	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7653	ENST00000555868.2_3	ENST00000555185.5_1	chr14	61744087	61748056	TMEM30B	-	protein_coding	chr14	61654276	61997302	PRKCH	+	protein_coding	4392	opposite	12731_ID	chr14	61744088	61748056	3969	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7662	ENST00000556073.1_3	ENST00000415614.6_5	chr14	105055357	105056184	BX927359.1	-	lncRNA	chr14	104941014	105071096	TMEM179	-	protein_coding	827	same	6462_ID	chr14	105055358	105056184	827	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7666	ENST00000556127.1_1	ENST00000341653.6_3	chr14	65548751	65558583	AL139022.1	+	lncRNA	chr14	65472891	65569105	MAX	-	protein_coding	79498	opposite	4997_ID	chr14	65548752	65558583	9832	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7676	ENST00000556526.1_2	ENST00000555283.1_6	chr14	21058351	21058982	RNASE12	-	protein_coding	chr14	21052498	21077954	AL163195.3	-	protein_coding	631	same	10528_ID	chr14	21058352	21058982	631	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
7689	ENST00000556834.1_3	ENST00000553432.5_1	chr14	52382862	52385289	AL358333.2	-	lncRNA	chr14	52292912	52433561	GNG2	+	protein_coding	2427	opposite	5449_ID	chr14	52382863	52385289	2427	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7700	ENST00000557246.1_1	ENST00000556810.5_2	chr14	56981048	57018027	AL355103.1	+	lncRNA	chr14	56955071	57052620	TMEM260	+	protein_coding	36979	same	5321_ID	chr14	56981049	57018027	36979	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7709	ENST00000557467.1_3	ENST00000554725.1_1	chr14	57284471	57360428	AL161757.4	-	lncRNA	chr14	57279988	57618895	OTX2-AS1	+	lncRNA	76141	opposite	5171_ID	chr14	57284472	57360428	75957	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7714	ENST00000557649.6_3	ENST00000415614.6_5	chr14	105046100	105056852	C14orf180	+	protein_coding	chr14	104941014	105071096	TMEM179	-	protein_coding	10752	opposite	6472_ID	chr14	105046101	105056852	10752	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7715	ENST00000557683.1_3	ENST00000561674.1_3	chr15	92706027	92715666	AC116903.1	-	lncRNA	chr15	92691981	92874267	AC116903.2	-	lncRNA	9639	same	3919_ID	chr15	92706028	92715666	9639	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7738	ENST00000558245.1_3	ENST00000560484.1_3	chr15	39592618	39602983	AC013652.2	-	lncRNA	chr15	39178834	39713176	AC013652.1	-	lncRNA	10365	same	1459_ID	chr15	39592619	39602983	10365	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7772	ENST00000558860.2_5	ENST00000619812.1_1	chr15	96588569	96607586	AC024337.1	-	lncRNA	chr15	96533810	96844219	AC012409.2	+	lncRNA	19017	opposite	2012_ID	chr15	96588570	96607586	19017	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7785	ENST00000559165.1_3	ENST00000561245.1_5	chr15	49021276	49022041	AC084757.2	-	lncRNA	chr15	49005124	49034211	CEP152	-	nonsense_mediated_decay	765	same	2752_ID	chr15	49021277	49022041	765	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7815	ENST00000559875.1_3	ENST00000644354.1_1	chr15	48484387	48493881	AC066612.2	-	lncRNA	chr15	48470318	48495907	CTXN2	+	protein_coding	9494	opposite	2369_ID	chr15	48484388	48493881	9494	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
7882	ENST00000561595.1_1	ENST00000568932.5_3	chr16	63402747	63403360	AC138305.2	+	lncRNA	chr16	63348167	63651950	AC138305.1	-	lncRNA	613	opposite	4183_ID	chr16	63402748	63403360	613	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7897	ENST00000561827.1_1	ENST00000562153.5_4	chr16	72118755	72121342	AC009087.1	+	lncRNA	chr16	72078187	72127456	TXNL4B	-	protein_coding	2587	opposite	858_ID	chr16	72118756	72121342	2587	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7899	ENST00000561876.1_1	ENST00000568150.3_2	chr16	48671053	48672630	AC023813.3	+	lncRNA	chr16	48657332	48780229	AC007611.1	+	lncRNA	1577	same	1973_ID	chr16	48671054	48672630	1577	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7914	ENST00000562313.1	ENST00000639408.1_3	chr1	159994742	159996584	RP11-226L15.5	-	sense_overlapping	chr1	159968440	160039926	KCNJ10	-	protein_coding	1842	same	11884_ID	chr1	159994743	159996584	1842	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7918	ENST00000562391.5_1	ENST00000569722.5_2	chr18	77806899	77839195	RBFADN	+	lncRNA	chr18	77794345	77854968	AC090360.1	+	nonsense_mediated_decay	46463	same	9711_ID	chr18	77806900	77839195	32296	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	3
7938	ENST00000562699.1_1	ENST00000562642.1_2	chr16	30960472	30967782	ORAI3	+	protein_coding	chr16	30959851	30967832	AC135048.1	+	lncRNA	7394	same	9476_ID	chr16	30960473	30967782	7310	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
7946	ENST00000562835.1_3	ENST00000561562.5_5	chr16	83963400	83964715	AC009119.2	-	lncRNA	chr16	83941736	83985050	MLYCD	+	protein_coding	1428	opposite	883_ID	chr16	83963401	83964715	1315	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7955	ENST00000562894.1_1	ENST00000557398.2_3	chr15	93322986	93324722	AC106028.3	-	lncRNA	chr15	93162531	93353028	FAM174B	-	protein_coding	1736	same	3629_ID	chr15	93322987	93324722	1736	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7958	ENST00000562949.1_5	ENST00000562595.5_7	chr16	69362546	69368774	AC026464.6	-	protein_coding	chr16	69355893	69373396	COG8	-	protein_coding	6228	same	2154_ID	chr16	69362547	69368774	6228	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7992	ENST00000563554.1_3	ENST00000567194.5_7	chr16	75492149	75493915	AC009163.4	-	lncRNA	chr16	75446581	75498604	AC009163.5	-	protein_coding	1766	same	914_ID	chr16	75492150	75493915	1766	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7996	ENST00000563568.1_3	ENST00000360639.6_2	chr15	75503641	75504508	AC113208.4	-	lncRNA	chr15	75491232	75504510	C15orf39	+	protein_coding	867	opposite	3846_ID	chr15	75503642	75504508	867	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
8003	ENST00000563727.1_1	ENST00000561975.5_1	chr15	74418255	74421179	AC010931.1	-	lncRNA	chr15	74392651	74430881	ISLR2	+	processed_transcript	3427	opposite	1161_ID	chr15	74418256	74421179	2924	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8012	ENST00000563938.1	ENST00000419165.5_3	chrX	103197628	103202112	GHc-362H12.3	+	sense_intronic	chrX	103173478	103220560	TMSB15B	+	protein_coding	4484	same	7116_ID	chrX	103197629	103202112	4484	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8015	ENST00000564016.1_1	ENST00000381774.9_4	chr16	12839729	12851692	AC109597.1	+	lncRNA	chr16	12753655	12897744	CPPED1	-	protein_coding	11963	opposite	3774_ID	chr16	12839730	12851692	11963	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8016	ENST00000564071.1_3	ENST00000525633.1_3	chr1	47134526	47138923	TEX38	+	protein_coding	chr1	47124375	47139539	ATPAF1	-	processed_transcript	4740	opposite	12658_ID	chr1	47134527	47138923	4397	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8019	ENST00000564121.1_1	ENST00000659964.1_1	chr2	127782786	127787262	AC012508.1	+	lncRNA	chr2	127782441	127791524	AC012508.3	+	lncRNA	4476	same	1398_ID	chr2	127782787	127787262	4476	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8026	ENST00000564380.1_1	ENST00000652305.1_1	chr12	54538852	54541009	AC023794.5	-	lncRNA	chr12	54519974	54541267	LINC02381	+	lncRNA	2157	opposite	1969_ID	chr12	54538853	54541009	2157	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
8051	ENST00000564809.1_1	ENST00000262428.5_4	chr16	84627998	84630432	AC092145.1	+	lncRNA	chr16	84599201	84651684	COTL1	-	protein_coding	2434	opposite	3064_ID	chr16	84627999	84630432	2434	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8060	ENST00000565058.2_1	ENST00000554560.5_7	chr14	92219199	92226142	AL121839.2	-	lncRNA	chr14	92189401	92247051	CATSPERB	-	protein_coding	6943	same	4761_ID	chr14	92219200	92226142	6943	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8075	ENST00000565433.1_1	ENST00000393597.7_2	chr11	72950019	72953380	AP002761.4	+	lncRNA	chr11	72929325	72953472	P2RY2	+	protein_coding	3361	same	6199_ID	chr11	72950020	72953380	3361	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
8081	ENST00000565521.1_3	ENST00000296824.4_4	chr5	214012	217394	AC021087.3	-	retained_intron	chr5	196982	218268	CCDC127	-	protein_coding	3382	same	1778_ID	chr5	214013	217394	3382	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
8086	ENST00000565648.1_3	ENST00000327827.12_2	chr16	9199690	9201031	AC087190.1	-	lncRNA	chr16	9185500	9215492	C16orf72	+	protein_coding	1341	opposite	2781_ID	chr16	9199691	9201031	1341	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8109	ENST00000565962.1_1	ENST00000663543.1_3	chr6	82679169	82679256	AL360157.1	-	lncRNA	chr6	82554320	82879108	LINC02542	-	lncRNA	87	same	5516_ID	chr6	82679170	82679256	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8124	ENST00000566282.1_3	ENST00000561490.5_4	chr15	52940830	52942063	AC009754.1	-	lncRNA	chr15	52903821	53002014	FAM214A	-	protein_coding	1233	same	992_ID	chr15	52940831	52942063	1233	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8128	ENST00000566370.1_1	ENST00000657876.1_1	chr13	46870579	46871979	LINC00563	-	lncRNA	chr13	46864434	46872245	AL139801.1	+	lncRNA	1400	opposite	7564_ID	chr13	46870580	46871979	1400	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
8133	ENST00000566521.1_3	ENST00000565468.6_3	chr7	141129510	141131068	AC005692.2	-	lncRNA	chr7	140773863	141180180	TMEM178B	+	protein_coding	1558	opposite	327_ID	chr7	141129511	141131068	1558	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8141	ENST00000566684.2_4	ENST00000650622.1_2	chr16	5265243	5270844	LINC02164	-	lncRNA	chr16	5157672	5285823	AC074051.3	+	lncRNA	5601	opposite	7743_ID	chr16	5265244	5270844	5601	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8142	ENST00000566715.1_1	ENST00000558605.1_1	chr15	78433584	78435515	AC090260.1	+	lncRNA	chr15	78423839	78449921	IDH3A	+	processed_transcript	1931	same	2888_ID	chr15	78433585	78435515	1931	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8178	ENST00000567305.1_1	ENST00000668519.1_1	chr2	227668751	227669777	AC010735.1	+	lncRNA	chr2	227664861	227678457	AC010735.2	+	lncRNA	1026	same	1134_ID	chr2	227668752	227669777	1026	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8187	ENST00000567484.1_1	ENST00000561108.6_4	chr15	90052191	90053647	AC013391.3	+	lncRNA	chr15	90048139	90067280	LINC00928	-	lncRNA	1456	opposite	1438_ID	chr15	90052192	90053647	1456	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
8225	ENST00000568345.1_1	ENST00000562573.1_3	chr15	72757468	72758603	AC079322.1	-	lncRNA	chr15	72700118	72766550	TMEM202-AS1	-	lncRNA	1135	same	2642_ID	chr15	72757469	72758603	1135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8266	ENST00000569407.1_1	ENST00000381774.9_4	chr16	12853138	12855019	AC109597.2	+	lncRNA	chr16	12753655	12897744	CPPED1	-	protein_coding	1881	opposite	3775_ID	chr16	12853139	12855019	1881	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8290	ENST00000570083.1	ENST00000562153.5_4	chr16	72088490	72094954	HP	+	protein_coding	chr16	72078187	72127456	TXNL4B	-	protein_coding	6464	opposite	7285_ID	chr16	72088491	72094954	6464	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8302	ENST00000570444.1_3	ENST00000323206.2_2	chr17	7339875	7340842	AC113189.1	-	lncRNA	chr17	7338753	7340998	TMEM102	+	protein_coding	967	opposite	3839_ID	chr17	7339876	7340842	967	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
8309	ENST00000570700.1_1	ENST00000674022.1_2	chr16	3156764	3159577	AC108134.4	+	lncRNA	chr16	3150696	3193735	ZNF213-AS1	-	lncRNA	2813	opposite	3724_ID	chr16	3156765	3159577	2813	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8325	ENST00000571611.1_3	ENST00000655174.1_1	chr16	13425224	13426440	AC003009.1	-	lncRNA	chr16	13340088	13657245	U91319.1	+	lncRNA	1216	opposite	79_ID	chr16	13425225	13426440	1216	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8328	ENST00000571766.2_3	ENST00000572821.5_3	chr17	3057182	3058176	OR1P1	-	polymorphic_pseudogene	chr17	3038262	3080229	AC090282.1	-	lncRNA	994	same	9371_ID	chr17	3057183	3058176	994	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8353	ENST00000573168.1_1	ENST00000344415.9_3	chr17	19044329	19047002	AC007952.6	-	lncRNA	chr17	19030901	19062500	GRAPL	+	protein_coding	2673	opposite	672_ID	chr17	19044330	19047002	2673	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8369	ENST00000573934.2_1	ENST00000558730.2_3	chr16	55366266	55366879	AC109462.2	+	lncRNA	chr16	55293880	55367500	AC109462.1	-	lncRNA	613	opposite	3765_ID	chr16	55366267	55366879	613	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8382	ENST00000574560.1_3	ENST00000304478.9_2	chr17	692983	693765	AC087392.4	-	lncRNA	chr17	685592	695749	MRM3	+	protein_coding	782	opposite	2812_ID	chr17	692984	693765	782	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8383	ENST00000574616.2_2	ENST00000327827.12_2	chr16	9198704	9207038	AC087190.3	+	lncRNA	chr16	9185500	9215492	C16orf72	+	protein_coding	8334	same	2783_ID	chr16	9198705	9207038	8334	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8388	ENST00000574716.1_3	ENST00000226067.10_2	chr17	53348864	53351014	AC007638.2	-	lncRNA	chr17	53342320	53402548	HLF	+	protein_coding	2150	opposite	621_ID	chr17	53348865	53351014	2150	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8391	ENST00000574902.5_1	ENST00000674022.1_2	chr16	3184923	3192804	ZNF213	+	protein_coding	chr16	3150696	3193735	ZNF213-AS1	-	lncRNA	13028	opposite	13029_ID	chr16	3184924	3192804	7881	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8412	ENST00000576178.6_3	ENST00000503031.1	chr10	47083533	47088320	NPY4R2	+	protein_coding	chr10	47011752	47174018	LINC00842	-	lincRNA	4787	opposite	9297_ID	chr10	47083534	47088320	4787	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8470	ENST00000577367.1	ENST00000310380.11_4	chr3	194855234	194855309	MIR3137	-	miRNA	chr3	194789012	194991888	XXYLT1	-	protein_coding	75	same	8262_ID	chr3	194855235	194855309	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8479	ENST00000577394.1	ENST00000519718.1_3	chr5	133561447	133561543	MIR3661	+	miRNA	chr5	133502860	133561762	AC104109.3	-	protein_coding	96	opposite	8370_ID	chr5	133561448	133561543	96	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
8498	ENST00000577518.1	ENST00000305479.3_2	chr20	44333740	44333819	MIR3617	-	miRNA	chr20	44330676	44337456	WFDC13	+	protein_coding	79	opposite	8352_ID	chr20	44333741	44333819	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8517	ENST00000577602.1	ENST00000439373.3_2	chr1	170120518	170120603	MIR3119-2	+	miRNA	chr1	170115099	170138007	METTL11B	+	protein_coding	85	same	8244_ID	chr1	170120519	170120603	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8555	ENST00000577765.1_3	ENST00000670139.1_3	chr8	123712507	123715662	AC100872.2	-	lncRNA	chr8	123632954	123746043	LINC01151	-	lncRNA	3155	same	3446_ID	chr8	123712508	123715662	3155	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8569	ENST00000577826.1	ENST00000392929.6_4	chr2	135615389	135615443	MIR5590	+	miRNA	chr2	135493033	135676240	CCNT2-AS1	-	lncRNA	54	opposite	8943_ID	chr2	135615390	135615443	54	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8601	ENST00000578027.1	ENST00000423777.7_2	chr19	50436320	50436394	MIR4751	+	miRNA	chr19	50432461	50437192	ATF5	+	protein_coding	74	same	8739_ID	chr19	50436321	50436394	74	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
8626	ENST00000578197.1	ENST00000601211.1_3	chr19	50357847	50357908	MIR4749	+	miRNA	chr19	50356143	50358224	AC018766.1	-	lncRNA	61	opposite	8736_ID	chr19	50357848	50357908	61	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
8628	ENST00000578198.1	ENST00000603385.2_2	chrX	53172215	53172299	AL139396.1	-	miRNA	chrX	53123329	53200096	KANTR	+	processed_transcript	84	opposite	5045_ID	chrX	53172216	53172299	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8634	ENST00000578235.1	ENST00000596019.5_3	chr19	20137835	20137926	AC006539.1	-	miRNA	chr19	20107866	20150274	ZNF682	-	protein_coding	91	same	479_ID	chr19	20137836	20137926	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8664	ENST00000578416.1	ENST00000533008.1_1	chr11	74110281	74110378	MIR548AL	+	miRNA	chr11	74108697	74196787	AP001372.1	+	lncRNA	97	same	8877_ID	chr11	74110282	74110378	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8737	ENST00000578856.1	ENST00000434990.1_3	chr2	71240218	71240287	AC007040.3	-	miRNA	chr2	71229660	71291873	AC007881.2	-	lncRNA	69	same	501_ID	chr2	71240219	71240287	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8753	ENST00000578962.1	ENST00000366987.6_2	chr1	212789049	212789295	RN7SL512P	-	misc_RNA	chr1	212738675	212794114	ATF3	+	protein_coding	246	opposite	10241_ID	chr1	212789050	212789295	246	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8757	ENST00000579003.1_1	ENST00000667382.1_3	chr17	56408244	56409869	AC004687.1	-	lncRNA	chr17	56401832	56431028	TSPOAP1-AS1	+	lncRNA	1625	opposite	154_ID	chr17	56408245	56409869	1625	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8771	ENST00000579068.1	ENST00000429816.1_3	chr2	181481844	181481933	AC009478.2	-	miRNA	chr2	181436438	181557181	AC009478.1	-	lncRNA	89	same	961_ID	chr2	181481845	181481933	89	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8782	ENST00000579134.1	ENST00000586607.5_4	chr17	73780601	73780688	MIR4738	-	miRNA	chr17	73774656	73781567	H3-3B	-	protein_coding	87	same	8725_ID	chr17	73780602	73780688	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8797	ENST00000579227.1	ENST00000507217.5_2	chr5	91741652	91741744	AC120120.1	-	miRNA	chr5	91378413	91815133	AC114316.1	+	lncRNA	92	opposite	3960_ID	chr5	91741653	91741744	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8814	ENST00000579351.1	ENST00000655056.1_3	chr1	37627163	37627235	MIR4255	+	miRNA	chr1	37620363	37784244	AL353604.1	-	lncRNA	72	opposite	8457_ID	chr1	37627164	37627235	72	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8903	ENST00000579844.1	ENST00000442421.5_1	chr13	50570550	50570637	MIR3613	-	miRNA	chr13	50570023	50586463	TRIM13	+	protein_coding	87	opposite	8347_ID	chr13	50570551	50570637	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8915	ENST00000579902.1	ENST00000656751.1_3	chr6	30718814	30719062	RN7SL353P	+	misc_RNA	chr6	30711566	30759891	HCG20	+	lncRNA	248	same	10125_ID	chr6	30718815	30719062	248	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8943	ENST00000580069.1	ENST00000671206.1_3	chr21	20058407	20058482	MIR548X	-	miRNA	chr21	19933582	20132633	MIR548XHG	-	lncRNA	75	same	8921_ID	chr21	20058408	20058482	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8967	ENST00000580249.1	ENST00000411746.1	chr1	142653524	142653607	AL583842.3	+	miRNA	chr1	142619122	142729975	RP11-417J8.3	+	lincRNA	83	same	5729_ID	chr1	142653525	142653607	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
8971	ENST00000580256.3_4	ENST00000643787.1_3	chr17	10725786	10741404	PIRT	-	protein_coding	chr17	10698222	10741411	AC015908.6	-	lncRNA	15618	same	9564_ID	chr17	10725787	10741404	15618	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
8985	ENST00000580341.1	ENST00000678770.1_1	chr1	150539039	150539336	RN7SL473P	-	misc_RNA	chr1	150535577	150552086	MCL1	-	protein_coding	297	same	10210_ID	chr1	150539040	150539336	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8994	ENST00000580367.1	ENST00000222567.6_4	chr7	19744980	19745059	MIR3146	-	miRNA	chr7	19735083	19748660	POLR1F	-	protein_coding	79	same	8269_ID	chr7	19744981	19745059	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9000	ENST00000580401.1	ENST00000649384.1_3	chr16	10315633	10315930	RN7SL493P	-	misc_RNA	chr16	10308640	10321438	AC022168.1	-	lncRNA	297	same	10224_ID	chr16	10315634	10315930	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9047	ENST00000580631.1	ENST00000621421.4_2	chr13	21716329	21716629	RN7SL80P	-	misc_RNA	chr13	21714652	21723223	SAP18	+	protein_coding	300	opposite	10448_ID	chr13	21716330	21716629	300	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9095	ENST00000580867.1_3	ENST00000584531.1_1	chr18	14969604	14970467	LINC01444	-	lncRNA	chr18	14946265	14973738	LINC01443	+	lncRNA	1468	opposite	7644_ID	chr18	14969605	14970467	863	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9100	ENST00000580897.1_1	ENST00000357736.9_4	chr17	79880774	79882387	AC145207.8	+	lncRNA	chr17	79876145	79885611	MAFG	-	protein_coding	1613	opposite	4235_ID	chr17	79880775	79882387	1613	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
9111	ENST00000580946.1	ENST00000336769.9_1	chr22	49176106	49176165	MIR4535	+	miRNA	chr22	48885403	49246724	TAFA5	+	protein_coding	59	same	8614_ID	chr22	49176107	49176165	59	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9112	ENST00000580957.1	ENST00000589888.5_1	chr19	56907684	56907770	AC006116.1	-	miRNA	chr19	56905086	56910537	ZNF582-AS1	+	lncRNA	86	opposite	420_ID	chr19	56907685	56907770	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9113	ENST00000580961.1	ENST00000664453.1_3	chrX	114938131	114938187	AC005000.2	+	miRNA	chrX	114929232	115085355	DANT2	-	lncRNA	56	opposite	209_ID	chrX	114938132	114938187	56	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9122	ENST00000580978.1	ENST00000381774.9_4	chr16	12814177	12814228	MIR4718	+	miRNA	chr16	12753655	12897744	CPPED1	-	protein_coding	51	opposite	8705_ID	chr16	12814178	12814228	51	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9123	ENST00000580979.1_1	ENST00000324689.8_2	chr17	29298669	29300330	AC138207.4	+	lncRNA	chr17	29298040	29326927	RNF135	+	protein_coding	1661	same	4180_ID	chr17	29298670	29300330	1661	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9137	ENST00000581081.1	ENST00000507248.1_3	chr4	109498227	109498296	AC084209.1	-	miRNA	chr4	109459345	109541553	RPL34-DT	-	lncRNA	69	same	2741_ID	chr4	109498228	109498296	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9172	ENST00000581333.1_1	ENST00000609549.5_2	chr1	32110294	32114972	AC114488.2	+	lncRNA	chr1	32109649	32125505	PEF1-AS1	+	lncRNA	4678	same	3864_ID	chr1	32110295	32114972	4678	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9186	ENST00000581415.1	ENST00000568189.5_1	chr2	111042429	111042520	MIR4436B2	+	miRNA	chr2	111003167	111043433	AC140479.4	+	lncRNA	91	same	8539_ID	chr2	111042430	111042520	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9208	ENST00000581586.1	ENST00000414877.1_3	chr21	33524216	33524320	AP000261.1	+	miRNA	chr21	33452628	33570125	LINC00159	-	lncRNA	104	opposite	5968_ID	chr21	33524217	33524320	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9209	ENST00000581591.1	ENST00000667382.1_3	chr17	56413336	56413383	MIR4736	-	miRNA	chr17	56401832	56431028	TSPOAP1-AS1	+	lncRNA	47	opposite	8723_ID	chr17	56413337	56413383	47	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9221	ENST00000581673.1_1	ENST00000439794.6_1	chr17	20867034	20883551	AC107926.1	+	lncRNA	chr17	20771809	20897455	CCDC144NL-AS1	+	lncRNA	16517	same	3704_ID	chr17	20867035	20883551	16517	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9243	ENST00000581796.1_1	ENST00000439174.7_4	chr17	63048026	63049426	AC037487.2	+	lncRNA	chr17	63005406	63052858	GNA13	-	protein_coding	1400	opposite	2286_ID	chr17	63048027	63049426	1400	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9246	ENST00000581811.1	ENST00000678770.1_1	chr1	150541448	150541745	RN7SL600P	-	misc_RNA	chr1	150535577	150552086	MCL1	-	protein_coding	297	same	10297_ID	chr1	150541449	150541745	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9251	ENST00000581823.1	ENST00000650395.1_3	chr2	60614496	60614580	MIR4432	-	miRNA	chr2	60586228	60666963	MIR4432HG	-	lncRNA	84	same	8532_ID	chr2	60614497	60614580	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9263	ENST00000581861.1	ENST00000584701.2_4	chr10	48387523	48387622	AL731561.2	+	miRNA	chr10	48381480	48390999	RBP3	-	protein_coding	99	opposite	5895_ID	chr10	48387524	48387622	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9273	ENST00000581916.1	ENST00000373212.6_2	chrX	80496318	80496400	AL357115.1	+	miRNA	chrX	80457600	80554046	SH3BGRL	+	protein_coding	82	same	5419_ID	chrX	80496319	80496400	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9294	ENST00000581998.1	ENST00000366312.2_1	chr6	10439949	10440027	MIR5689	+	miRNA	chr6	10434561	10457014	MIR5689HG	+	lncRNA	78	same	8960_ID	chr6	10439950	10440027	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9369	ENST00000582397.1	ENST00000438000.1	chr1	143163749	143163822	MIR3118-2	+	miRNA	chr1	143119060	143233417	RP11-782C8.1	+	lincRNA	73	same	8240_ID	chr1	143163750	143163822	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9375	ENST00000582431.1	ENST00000344843.12_4	chr1	1340840	1341132	RN7SL657P	-	misc_RNA	chr1	1337288	1342673	MRPL20	-	protein_coding	292	same	10344_ID	chr1	1340841	1341132	292	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9377	ENST00000582446.1	ENST00000411746.1	chr1	142656061	142656144	AL583842.2	+	miRNA	chr1	142619122	142729975	RP11-417J8.3	+	lincRNA	83	same	5727_ID	chr1	142656062	142656144	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9379	ENST00000582451.1	ENST00000343010.8_7	chr3	49311552	49311619	MIR4271	+	miRNA	chr3	49306028	49314665	C3orf62	-	protein_coding	67	opposite	8471_ID	chr3	49311553	49311619	67	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
9414	ENST00000582688.1	ENST00000291232.5_4	chr22	42319225	42319301	MIR378I	-	miRNA	chr22	42318035	42322810	TNFRSF13C	-	protein_coding	76	same	8407_ID	chr22	42319226	42319301	76	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
9439	ENST00000582819.1	ENST00000450890.5_2	chr10	33323584	33323852	RN7SL847P	-	misc_RNA	chr10	33247772	33371030	ITGB1-DT	+	lncRNA	268	opposite	10476_ID	chr10	33323585	33323852	268	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9492	ENST00000583110.1	ENST00000532852.5_6	chr11	71616152	71616240	AP000719.1	+	miRNA	chr11	71576554	71630003	AP002495.1	-	protein_coding	88	opposite	6015_ID	chr11	71616153	71616240	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9513	ENST00000583207.1	ENST00000654523.1_3	chr10	118927188	118927285	MIR3663	-	miRNA	chr10	118904074	118928574	MIR3663HG	-	lncRNA	97	same	8373_ID	chr10	118927189	118927285	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9523	ENST00000583257.1	ENST00000563480.6_6	chr15	66789295	66789372	MIR4512	-	miRNA	chr15	66782472	66790088	SNAPC5	-	protein_coding	77	same	8590_ID	chr15	66789296	66789372	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9526	ENST00000583272.1	ENST00000272462.3_3	chr2	110844009	110844100	MIR4436B1	-	miRNA	chr2	110841446	110873399	MALL	-	protein_coding	91	same	8538_ID	chr2	110844010	110844100	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9534	ENST00000583311.1	ENST00000421939.5_5	chr9	130548111	130548202	MIR3960	+	miRNA	chr9	130547957	130549854	CDK9	+	protein_coding	91	same	8444_ID	chr9	130548112	130548202	91	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	3
9545	ENST00000583423.1	ENST00000521102.2_5	chr8	104166841	104166917	MIR3151	+	miRNA	chr8	104165621	104184388	BAALC-AS1	-	lncRNA	76	opposite	8272_ID	chr8	104166842	104166917	76	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
9557	ENST00000583485.1	ENST00000521411.2_3	chr8	16720708	16721005	RN7SL474P	-	misc_RNA	chr8	16534413	16772553	AC011586.2	-	lncRNA	297	same	10211_ID	chr8	16720709	16721005	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9562	ENST00000583512.1	ENST00000448203.2_1	chr17	39993315	39993580	RN7SL871P	-	misc_RNA	chr17	39991936	39998246	KLHL10	+	protein_coding	265	opposite	10495_ID	chr17	39993316	39993580	265	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9567	ENST00000583531.1	ENST00000502684.1_1	chr5	174178736	174178790	MIR4634	+	miRNA	chr5	174178306	174277728	AC113346.2	+	lncRNA	54	same	8620_ID	chr5	174178737	174178790	54	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9570	ENST00000583549.1	ENST00000518663.1_1	chr8	8905954	8906028	MIR4660	+	miRNA	chr8	8873841	8974256	ERI1	+	processed_transcript	74	same	8650_ID	chr8	8905955	8906028	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9594	ENST00000583669.1	ENST00000427710.5_4	chr2	55335845	55335939	AC093165.1	+	miRNA	chr2	55254342	55339757	RTN4	-	protein_coding	94	opposite	3187_ID	chr2	55335846	55335939	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9607	ENST00000583734.1	ENST00000455502.5_1	chr7	93346239	93346317	MIR4652	+	miRNA	chr7	93220884	93540387	GNGT1	+	protein_coding	78	same	8639_ID	chr7	93346240	93346317	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9616	ENST00000583807.1	ENST00000426593.1_3	chr9	92785722	92785817	MIR4290	-	miRNA	chr9	92782935	92803781	MIR4290HG	-	lncRNA	95	same	8485_ID	chr9	92785723	92785817	95	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9661	ENST00000584065.1	ENST00000559234.5_4	chr20	39918921	39919217	RN7SL615P	-	misc_RNA	chr20	39810754	39946242	ZHX3	-	protein_coding	296	same	10308_ID	chr20	39918922	39919217	296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9662	ENST00000584066.1	ENST00000411746.1	chr1	142667288	142667363	MIR3118-1	+	miRNA	chr1	142619122	142729975	RP11-417J8.3	+	lincRNA	75	same	8237_ID	chr1	142667289	142667363	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9690	ENST00000584200.1	ENST00000609514.1_4	chr10	112235254	112235352	AL355512.2	-	miRNA	chr10	112188597	112255945	AL355512.1	-	lncRNA	98	same	5345_ID	chr10	112235255	112235352	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9694	ENST00000584227.1	ENST00000548740.1_3	chr12	96837257	96837327	AC021052.1	+	miRNA	chr12	96816103	96879220	AC007513.1	-	lncRNA	70	opposite	1775_ID	chr12	96837258	96837327	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9700	ENST00000584270.1	ENST00000557359.6_2	chr14	28102410	28102484	hsa-mir-3171	-	miRNA	chr14	28081782	28108842	LINC00645	+	lncRNA	74	opposite	7291_ID	chr14	28102411	28102484	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9703	ENST00000584276.1_3	ENST00000585280.5_3	chr17	46007047	46010472	AC018521.6	-	lncRNA	chr17	45974695	46018755	SP2-AS1	-	lncRNA	3425	same	1629_ID	chr17	46007048	46010472	3425	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9704	ENST00000584277.1_3	ENST00000262138.4_2	chr17	65016049	65017859	AC005544.1	-	lncRNA	chr17	64960822	65029514	CACNG4	+	protein_coding	1810	opposite	312_ID	chr17	65016050	65017859	1810	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9707	ENST00000584300.1	ENST00000272164.6_4	chr1	228129290	228129384	MIR5008	-	miRNA	chr1	228106356	228135633	WNT9A	-	protein_coding	94	same	8811_ID	chr1	228129291	228129384	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9711	ENST00000584305.1	ENST00000493380.5_3	chr10	14425198	14425276	MIR4293	-	miRNA	chr10	14124945	14504093	FRMD4A	-	protein_coding	78	same	8488_ID	chr10	14425199	14425276	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9721	ENST00000584365.1_1	ENST00000344415.9_3	chr17	19053591	19054599	AC007952.9	+	lncRNA	chr17	19030901	19062500	GRAPL	+	protein_coding	1008	same	673_ID	chr17	19053592	19054599	1008	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9744	ENST00000584499.1_3	ENST00000324689.8_2	chr17	29305627	29307268	AC138207.7	-	lncRNA	chr17	29298040	29326927	RNF135	+	protein_coding	1641	opposite	4181_ID	chr17	29305628	29307268	1641	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9763	ENST00000584598.1	ENST00000506106.1_2	chr5	56777646	56777730	AC025470.1	-	miRNA	chr5	56690886	56829251	AC025470.2	+	lncRNA	84	opposite	2092_ID	chr5	56777647	56777730	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9783	ENST00000584743.1	ENST00000556750.5_3	chr12	55948778	55948866	AC009779.1	-	miRNA	chr12	55828538	55979255	AC122685.1	-	lncRNA	88	same	995_ID	chr12	55948779	55948866	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9803	ENST00000584879.1	ENST00000443548.1	chr1	143424140	143424215	MIR3118-3	-	miRNA	chr1	143356064	143467532	RP11-435B5.4	-	lincRNA	75	same	8242_ID	chr1	143424141	143424215	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9844	ENST00000585074.1	ENST00000589765.1_3	chr19	12897941	12898006	MIR5684	+	miRNA	chr19	12884972	12983554	HOOK2	-	processed_transcript	65	opposite	8956_ID	chr19	12897942	12898006	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9854	ENST00000585129.1	ENST00000374026.7_6	chr6	34653133	34653419	RN7SL200P	-	misc_RNA	chr6	34555064	34664636	ILRUN	-	protein_coding	286	same	10017_ID	chr6	34653134	34653419	286	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9859	ENST00000585179.1	ENST00000507969.5_1	chr4	175848457	175848542	AC105914.1	-	miRNA	chr4	175750839	175852325	ADAM29	+	processed_transcript	85	opposite	3623_ID	chr4	175848458	175848542	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9872	ENST00000585212.1_3	ENST00000585268.1_3	chr17	29108510	29109239	AC127024.4	-	lncRNA	chr17	29096405	29111431	CRLF3	-	processed_transcript	729	same	4028_ID	chr17	29108511	29109239	729	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9874	ENST00000585220.1	ENST00000654495.1_3	chr6	69203330	69203418	AL606923.1	+	miRNA	chr6	69041910	69286083	AL606923.2	-	lncRNA	88	opposite	5844_ID	chr6	69203331	69203418	88	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
9883	ENST00000585264.1	ENST00000560386.5_3	chr15	35664456	35664565	MIR3942	-	miRNA	chr15	35509545	35703052	DPH6	-	processed_transcript	109	same	8439_ID	chr15	35664457	35664565	109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9893	ENST00000585312.1	ENST00000656045.1_1	chr7	63361445	63361511	AC092634.1	+	miRNA	chr7	63360690	63385580	LINC02848	+	lncRNA	66	same	3110_ID	chr7	63361446	63361511	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9902	ENST00000585496.1_1	ENST00000589765.1_3	chr19	12907636	12912663	AC018761.2	+	lncRNA	chr19	12884972	12983554	HOOK2	-	processed_transcript	5027	opposite	1661_ID	chr19	12907637	12912663	5027	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9935	ENST00000586394.1_1	ENST00000590798.1_3	chr19	12050773	12064196	AC008770.3	+	lncRNA	chr19	12035889	12090105	AC008770.2	+	protein_coding	13423	same	816_ID	chr19	12050774	12064196	13423	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9954	ENST00000586983.1_3	ENST00000341191.11_4	chr19	11836775	11841598	AC008543.3	-	lncRNA	chr19	11832079	11849761	ZNF823	-	protein_coding	4823	same	744_ID	chr19	11836776	11841598	4823	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9956	ENST00000587058.1_1	ENST00000658960.1_1	chr17	26546310	26547031	AC061975.7	+	lncRNA	chr17	26531641	26550761	AC061975.8	+	lncRNA	721	same	2346_ID	chr17	26546311	26547031	721	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9966	ENST00000587331.7_4	ENST00000662585.1_3	chr19	45202420	45213990	CEACAM16	+	protein_coding	chr19	45134873	45228481	AC243964.3	-	lncRNA	11570	opposite	6612_ID	chr19	45202421	45213990	11570	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
9977	ENST00000587645.1_3	ENST00000588873.1_7	chr19	37619580	37632542	AC012309.2	-	lncRNA	chr19	37583920	37697976	AC012309.1	-	protein_coding	12962	same	1356_ID	chr19	37619581	37632542	12962	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9986	ENST00000587898.1_1	ENST00000579671.5_3	chr17	27054275	27054757	AC010761.6	+	lncRNA	chr17	27052914	27062385	NEK8	+	protein_coding	482	same	1144_ID	chr17	27054276	27054757	482	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9996	ENST00000588245.1_1	ENST00000590968.1_3	chr18	59348885	59349928	AC105094.1	+	lncRNA	chr18	59259607	59416065	AC105094.2	-	lncRNA	1043	opposite	3593_ID	chr18	59348886	59349928	1043	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
9997	ENST00000588275.2_1	ENST00000586698.1_3	chr19	14444554	14454728	LINC01842	+	lncRNA	chr19	14416269	14474802	LINC01841	-	lncRNA	10174	opposite	7688_ID	chr19	14444555	14454728	10174	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10016	ENST00000588950.1_1	ENST00000353265.8_4	chr18	77941562	77960875	AC139100.1	+	lncRNA	chr18	77915114	78005397	PARD6G	-	protein_coding	19313	opposite	4202_ID	chr18	77941563	77960875	19313	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
10029	ENST00000589617.1_3	ENST00000668277.1_1	chr18	53728339	53730309	AC006305.2	-	lncRNA	chr18	53699060	53763541	LINC01905	+	lncRNA	1970	opposite	454_ID	chr18	53728340	53730309	1970	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10041	ENST00000590065.1_3	ENST00000589765.1_3	chr19	12895352	12895915	AC018761.3	-	lncRNA	chr19	12884972	12983554	HOOK2	-	processed_transcript	563	same	1662_ID	chr19	12895353	12895915	563	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
10072	ENST00000591038.1_3	ENST00000263384.12_2	chr19	16297086	16300269	AC020911.1	-	lncRNA	chr19	16296220	16302857	FAM32A	+	protein_coding	3183	opposite	1752_ID	chr19	16297087	16300269	3183	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10078	ENST00000591109.1_3	ENST00000588891.1_1	chr19	5911588	5913910	AC104532.2	-	lncRNA	chr19	5904851	5914718	AC104532.1	+	nonsense_mediated_decay	2322	opposite	3546_ID	chr19	5911589	5913910	2322	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10147	ENST00000593633.2_1	ENST00000424036.2_2	chr7	62856718	62859628	AC073188.6	-	retained_intron	chr7	62854122	62882431	AC073188.2	+	lncRNA	2910	opposite	2511_ID	chr7	62856719	62859628	2910	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10164	ENST00000594211.2_4	ENST00000594512.1_1	chr19	51505763	51512848	KLK9	-	protein_coding	chr19	51471465	51515385	AC011483.1	+	lncRNA	7127	opposite	7458_ID	chr19	51505764	51512848	7085	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
10223	ENST00000596135.1_3	ENST00000601627.1_2	chr19	41337125	41343115	AC008537.2	-	lncRNA	chr19	41307201	41404187	AC008537.1	+	nonsense_mediated_decay	5990	opposite	743_ID	chr19	41337126	41343115	5990	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10286	ENST00000597780.1_3	ENST00000597342.5_3	chr19	58378405	58379540	AC010326.3	-	lncRNA	chr19	58361687	58400326	ZNF814	-	protein_coding	1135	same	1062_ID	chr19	58378406	58379540	1135	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
10325	ENST00000598933.1_3	ENST00000646214.1_1	chr16	85968886	85969829	LINC02132	-	lncRNA	chr16	85958589	85982430	AC092723.5	+	lncRNA	943	opposite	7732_ID	chr16	85968887	85969829	943	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10326	ENST00000598950.1_1	ENST00000594663.1_5	chr19	17563019	17563778	AC010319.5	-	lncRNA	chr19	17547419	17571613	AC010319.2	-	protein_coding	759	same	1060_ID	chr19	17563020	17563778	759	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10331	ENST00000599127.1_3	ENST00000597989.1_1	chr19	46667149	46683904	AC006262.2	-	lncRNA	chr19	46604379	46699475	AC007785.1	+	lncRNA	16755	opposite	447_ID	chr19	46667150	46683904	16755	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10342	ENST00000599404.1_3	ENST00000601241.5_3	chr19	35129026	35131594	AC020910.2	-	lncRNA	chr19	35084346	35166604	SCGB2B2	-	protein_coding	2568	same	1751_ID	chr19	35129027	35131594	2568	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10343	ENST00000599411.2_2	ENST00000645754.1_3	chr16	86015355	86018487	AC092723.1	+	lncRNA	chr16	85996933	86018992	AC092723.4	-	lncRNA	3132	opposite	3136_ID	chr16	86015356	86018487	3132	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
10363	ENST00000600157.6_4	ENST00000668553.1_1	chr20	5412656	5451740	LINC00658	-	lncRNA	chr20	5298913	5483835	AL121757.2	+	lncRNA	44203	opposite	7570_ID	chr20	5412657	5451740	39084	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
10368	ENST00000600243.5_1	ENST00000597989.1_1	chr19	46646362	46664545	IGFL2	+	processed_transcript	chr19	46604379	46699475	AC007785.1	+	lncRNA	18194	same	7340_ID	chr19	46646363	46664545	18183	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10378	ENST00000600671.1_1	ENST00000596989.1_3	chr19	23506769	23511903	AC010300.1	+	lncRNA	chr19	23491704	23578273	ZNF91	-	processed_transcript	5134	opposite	1051_ID	chr19	23506770	23511903	5134	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
10383	ENST00000600767.5_3	ENST00000594512.1_1	chr19	51499263	51505967	KLK8	-	protein_coding	chr19	51471465	51515385	AC011483.1	+	lncRNA	6705	opposite	7457_ID	chr19	51499264	51505967	6704	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
10406	ENST00000601420.1_3	ENST00000428311.1_3	chr19	12640581	12643787	AC010422.4	-	lncRNA	chr19	12572372	12662288	AC008758.1	-	protein_coding	3206	same	1073_ID	chr19	12640582	12643787	3206	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10442	ENST00000602344.1_1	ENST00000619449.2_2	chr11	65265480	65265876	AP000769.2	-	lncRNA	chr11	65265158	65273902	MALAT1	+	lncRNA	396	opposite	6026_ID	chr11	65265481	65265876	396	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10450	ENST00000602412.1	ENST00000437515.1_3	chr1	121133255	121134581	RP11-343N15.5	+	lincRNA	chr1	121102016	121139765	SRGAP2-AS1	-	lncRNA	1326	opposite	11893_ID	chr1	121133256	121134581	1326	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10477	ENST00000602617.1_1	ENST00000435200.2_3	chr16	85826020	85826539	AC018695.3	+	lncRNA	chr16	85812229	85833214	EMC8	-	protein_coding	519	opposite	1649_ID	chr16	85826021	85826539	519	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10487	ENST00000602706.1_1	ENST00000435200.2_3	chr16	85817987	85821223	AC018695.4	+	lncRNA	chr16	85812229	85833214	EMC8	-	protein_coding	3236	opposite	1650_ID	chr16	85817988	85821223	3236	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10498	ENST00000602771.1_1	ENST00000522617.3_1	chr8	98156397	98156951	AP003117.1	+	lncRNA	chr8	98041696	98161882	CPQ	+	protein_coding	554	same	6240_ID	chr8	98156398	98156951	554	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
10501	ENST00000602789.1_1	ENST00000602719.5_4	chr16	85776892	85777831	AC018695.2	+	lncRNA	chr16	85723775	85784735	C16orf74	-	protein_coding	939	opposite	1648_ID	chr16	85776893	85777831	939	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10513	ENST00000602847.1_3	ENST00000644773.2_3	chr22	31372500	31374834	AC004542.2	-	lncRNA	chr22	31365255	31375381	TUG1	+	protein_coding	2334	opposite	139_ID	chr22	31372501	31374834	2334	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
10531	ENST00000602955.1_3	ENST00000644773.2_3	chr22	31373501	31373844	AC004542.1	-	lncRNA	chr22	31365255	31375381	TUG1	+	protein_coding	343	opposite	137_ID	chr22	31373502	31373844	343	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
10536	ENST00000602977.1_1	ENST00000398411.5_3	chr20	23612462	23612953	AL121894.2	-	lncRNA	chr20	23607342	23618582	CST3	-	protein_coding	491	same	4768_ID	chr20	23612463	23612953	491	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
10539	ENST00000603017.2_2	ENST00000603067.5_1	chr17	34058657	34070540	RASL10B	+	protein_coding	chr17	34040809	34165557	TAF15	+	retained_intron	11883	same	9707_ID	chr17	34058658	34070540	11883	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10548	ENST00000603308.1	ENST00000447898.1	chr22	16179616	16181004	LL22NC03-N64E9.1	-	sense_intronic	chr22	16147978	16192971	AP000525.9	-	lincRNA	1388	same	7830_ID	chr22	16179617	16181004	1388	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10551	ENST00000603401.1_1	ENST00000456933.1_1	chr1	96208651	96225026	AL683887.1	+	lncRNA	chr1	95975722	96247898	LINC02607	+	lncRNA	16375	same	5884_ID	chr1	96208652	96225026	16375	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10561	ENST00000603540.2_2	ENST00000556646.1_3	chr14	70918890	70926622	ADAM21	+	protein_coding	chr14	70892528	71014181	AL357153.2	-	lncRNA	7732	opposite	4348_ID	chr14	70918891	70926622	7732	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
10563	ENST00000603678.1_1	ENST00000603067.5_1	chr17	34145402	34150717	AC015849.4	+	lncRNA	chr17	34040809	34165557	TAF15	+	retained_intron	5315	same	1486_ID	chr17	34145403	34150717	5315	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10568	ENST00000603798.6_4	ENST00000604900.5_1	chr12	51638341	51664199	SMAGP	-	protein_coding	chr12	51632669	51665146	DAZAP2	+	protein_coding	25858	opposite	12122_ID	chr12	51638342	51664199	25858	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
10569	ENST00000603816.1_3	ENST00000603067.5_1	chr17	34084217	34085344	AC006237.1	-	lncRNA	chr17	34040809	34165557	TAF15	+	retained_intron	1127	opposite	442_ID	chr17	34084218	34085344	1127	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10571	ENST00000603854.1_1	ENST00000655659.1_3	chr6	1026728	1027460	AL033381.2	-	lncRNA	chr6	958561	1101607	LINC01622	-	lncRNA	732	same	4573_ID	chr6	1026729	1027460	732	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10572	ENST00000603872.2_2	ENST00000380593.4_1	chr20	2795632	2796476	C20orf141	+	protein_coding	chr20	2795613	2798712	AL035460.1	+	protein_coding	847	same	6502_ID	chr20	2795633	2796476	844	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
10574	ENST00000603915.1_1	ENST00000448814.7_7	chr10	112670353	112672002	AL158163.1	+	lncRNA	chr10	112658487	112678938	BBIP1	-	protein_coding	1649	opposite	5103_ID	chr10	112670354	112672002	1649	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10575	ENST00000603981.1_3	ENST00000603067.5_1	chr17	34143720	34157297	AC015849.3	-	lncRNA	chr17	34040809	34165557	TAF15	+	retained_intron	13577	opposite	1485_ID	chr17	34143721	34157297	13577	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10577	ENST00000604000.4_3	ENST00000630257.2_4	chr1	145477068	145501670	LIX1L	+	protein_coding	chr1	145475908	145507857	LIX1L-AS1	-	lncRNA	24602	opposite	7826_ID	chr1	145477069	145501670	24602	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
10578	ENST00000604052.1_1	ENST00000379619.5_1	chr2	28619681	28619977	AC104695.3	+	lncRNA	chr2	28615668	28640179	FOSL2	+	protein_coding	296	same	3566_ID	chr2	28619682	28619977	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10600	ENST00000604641.6_4	ENST00000603067.5_1	chr17	34071529	34080258	GAS2L2	-	protein_coding	chr17	34040809	34165557	TAF15	+	retained_intron	8729	opposite	7104_ID	chr17	34071530	34080258	8729	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10631	ENST00000605480.1_1	ENST00000374228.5_4	chr9	115647437	115648047	AL139041.1	+	lncRNA	chr9	115641199	115653156	SLC46A2	-	protein_coding	610	opposite	5002_ID	chr9	115647438	115648047	610	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
10637	ENST00000605587.2_4	ENST00000603067.5_1	chr17	34087905	34092098	C17orf50	+	protein_coding	chr17	34040809	34165557	TAF15	+	retained_intron	4193	same	6486_ID	chr17	34087906	34092098	4193	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10644	ENST00000605738.1_1	ENST00000603067.5_1	chr17	34135492	34135901	AC015849.2	-	lncRNA	chr17	34040809	34165557	TAF15	+	retained_intron	409	opposite	1484_ID	chr17	34135493	34135901	409	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10655	ENST00000605945.1_3	ENST00000660873.1_3	chr6	28046569	28048908	AL121944.1	-	lncRNA	chr6	27982899	28104599	ZSCAN16-AS1	-	lncRNA	2339	same	4787_ID	chr6	28046570	28048908	2339	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10662	ENST00000606030.1_1	ENST00000624802.1_3	chr5	140498261	140500347	AC244517.1	+	lncRNA	chr5	140480288	140553972	AC244517.2	-	lncRNA	2086	opposite	4292_ID	chr5	140498262	140500347	2086	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
10665	ENST00000606067.1_1	ENST00000521247.6_3	chr8	66626568	66627013	AC055822.1	-	lncRNA	chr8	66619279	66683496	MTFR1	+	protein_coding	445	opposite	2338_ID	chr8	66626569	66627013	445	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10673	ENST00000606154.1_1	ENST00000239461.11_2	chr1	170636521	170638566	Z97200.1	+	lncRNA	chr1	170633271	170708562	PRRX1	+	protein_coding	2045	same	12965_ID	chr1	170636522	170638566	2045	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10691	ENST00000606282.1_1	ENST00000606445.1_1	chr5	17107468	17107898	AC026790.1	-	lncRNA	chr5	17065706	17275462	BASP1	+	protein_coding	430	opposite	2173_ID	chr5	17107469	17107898	430	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10707	ENST00000606447.1_1	ENST00000454887.1_5	chr3	12873717	12874227	AC034198.2	-	lncRNA	chr3	12868944	12913415	CAND2	+	protein_coding	510	opposite	2257_ID	chr3	12873718	12874227	510	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10718	ENST00000606542.1_1	ENST00000659523.1_1	chr6	2437782	2438483	AL031768.1	+	lncRNA	chr6	2245969	2526210	GMDS-DT	+	lncRNA	28714	same	4558_ID	chr6	2437783	2438483	701	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10727	ENST00000606622.1_3	ENST00000607084.1_1	chr6	774746	780214	AL392183.1	-	lncRNA	chr6	761674	780648	AL357054.3	+	lncRNA	5468	opposite	5603_ID	chr6	774747	780214	5468	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
10743	ENST00000606807.1	ENST00000562452.2_1	chr18	5840693	5840832	MIR3976	+	miRNA	chr18	5748817	5876327	MIR3976HG	+	lncRNA	139	same	8447_ID	chr18	5840694	5840832	139	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
10753	ENST00000606888.3_3	ENST00000625258.1_4	chr1	145470514	145475647	ANKRD34A	+	protein_coding	chr1	145457275	145507835	AC243547.3	-	protein_coding	5133	opposite	5951_ID	chr1	145470515	145475647	5133	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10761	ENST00000606932.1_3	ENST00000371497.10_4	chr20	51872517	52103813	AL109930.1	-	lncRNA	chr20	51588896	52111869	TSHZ2	+	protein_coding	231296	opposite	4714_ID	chr20	51872518	52103813	231296	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	3
10771	ENST00000607068.1_1	ENST00000360578.7_4	chr5	675940	676731	AC026740.1	+	lncRNA	chr5	659976	693467	TPPP	-	protein_coding	791	opposite	2167_ID	chr5	675941	676731	791	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10774	ENST00000607106.1	ENST00000443548.1	chr1	143437326	143437409	BX004987.1	-	miRNA	chr1	143356064	143467532	RP11-435B5.4	-	lincRNA	83	same	6443_ID	chr1	143437327	143437409	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10789	ENST00000607263.1	ENST00000528638.1_1	chr11	77306155	77306224	AP002789.1	-	miRNA	chr11	77300435	77321054	AQP11	+	processed_transcript	69	opposite	6203_ID	chr11	77306156	77306224	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10808	ENST00000607376.1_1	ENST00000523891.1_1	chr8	144372568	144372791	AC138696.2	-	lncRNA	chr8	144371845	144378134	ZNF696	+	protein_coding	223	opposite	4190_ID	chr8	144372569	144372791	223	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10809	ENST00000607386.1_1	ENST00000673446.1_1	chr6	111618328	111619713	AL080317.1	+	lncRNA	chr6	111588861	111766557	MFSD4B	+	processed_transcript	1385	same	4679_ID	chr6	111618329	111619713	1385	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10812	ENST00000607421.1_1	ENST00000542222.1_1	chr12	7052670	7053767	U47924.2	-	lncRNA	chr12	7052595	7055166	C12orf57	+	processed_transcript	1097	opposite	12828_ID	chr12	7052671	7053767	1097	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
10832	ENST00000607580.1_1	ENST00000568150.3_2	chr16	48674383	48674963	AC023813.4	+	lncRNA	chr16	48657332	48780229	AC007611.1	+	lncRNA	580	same	1974_ID	chr16	48674384	48674963	580	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10866	ENST00000607919.1_1	ENST00000458080.1_1	chr22	29210901	29211650	Z93930.3	+	lncRNA	chr22	29196670	29244547	Z93930.2	+	lncRNA	749	same	12955_ID	chr22	29210902	29211650	749	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10884	ENST00000608063.1_1	ENST00000369788.7_3	chr10	105209952	105210609	AL139339.2	+	lncRNA	chr10	105206542	105212159	CALHM2	-	protein_coding	657	opposite	5038_ID	chr10	105209953	105210609	657	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10886	ENST00000608068.1_4	ENST00000627154.2_3	chr3	24537762	24541071	AC012087.2	-	lncRNA	chr3	24535969	24564719	THRB-AS1	+	lncRNA	3309	opposite	1331_ID	chr3	24537763	24541071	3309	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
10891	ENST00000608123.1_1	ENST00000652264.1_3	chr1	120619222	120619698	AC245008.1	+	lncRNA	chr1	120539910	120643275	NOTCH2	-	protein_coding	476	opposite	4301_ID	chr1	120619223	120619698	476	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10908	ENST00000608286.1	ENST00000447898.1	chr22	16154072	16154766	LL22NC03-N14H11.1	-	sense_intronic	chr22	16147978	16192971	AP000525.9	-	lincRNA	694	same	7829_ID	chr22	16154073	16154766	694	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
10945	ENST00000608775.1_1	ENST00000652995.1_1	chr2	177476164	177476977	AC017048.3	-	lncRNA	chr2	177359982	177520695	LINC01117	+	lncRNA	813	opposite	1602_ID	chr2	177476165	177476977	813	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10951	ENST00000608819.1_1	ENST00000459937.5_3	chr7	134853154	134854299	AC083862.1	+	lncRNA	chr7	134777114	134855447	CYREN	-	processed_transcript	21503	opposite	2719_ID	chr7	134853155	134854299	1145	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
10980	ENST00000609194.1_2	ENST00000370453.5_1	chr1	90285732	90286427	AC099568.2	-	lncRNA	chr1	90098698	90398809	AC093423.3	+	nonsense_mediated_decay	695	opposite	3383_ID	chr1	90285733	90286427	695	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
10981	ENST00000609211.1_1	ENST00000657359.1_3	chr3	184459724	184460250	AC107294.3	+	lncRNA	chr3	184442800	184490966	LINC02069	-	lncRNA	526	opposite	3690_ID	chr3	184459725	184460250	526	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11003	ENST00000609436.1_1	ENST00000633035.1_4	chr10	65224988	65226323	JMJD1C-AS1	+	lncRNA	chr10	64979636	65281610	JMJD1C	-	processed_transcript	1335	opposite	7389_ID	chr10	65224989	65226323	1335	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11004	ENST00000609461.1_1	ENST00000521995.1_5	chr21	46349567	46350027	AL844908.2	-	lncRNA	chr21	46330198	46351904	ITGB2	-	protein_coding	460	same	5916_ID	chr21	46349568	46350027	460	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11011	ENST00000609524.1_1	ENST00000657359.1_3	chr3	184460605	184461072	AC107294.1	+	lncRNA	chr3	184442800	184490966	LINC02069	-	lncRNA	467	opposite	3689_ID	chr3	184460606	184461072	467	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11051	ENST00000609953.1_1	ENST00000397841.5_4	chr21	46356217	46356869	AL844908.1	+	lncRNA	chr21	46352728	46359828	LINC01547	-	lncRNA	652	opposite	5915_ID	chr21	46356218	46356869	652	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11090	ENST00000610267.1_1	ENST00000609092.5_4	chr4	44706421	44706982	AC096586.1	+	lncRNA	chr4	44684224	44713040	GNPDA2	-	protein_coding	561	opposite	3280_ID	chr4	44706422	44706982	561	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11110	ENST00000610689.1_1	ENST00000622269.1_1	chr15	90825089	90825502	AC091167.5	+	lncRNA	chr15	90809548	90857731	AC091167.6	+	protein_coding	413	same	2989_ID	chr15	90825090	90825502	413	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11130	ENST00000611223.1_1	ENST00000668553.1_1	chr20	5388209	5388522	AL121757.3	+	lncRNA	chr20	5298913	5483835	AL121757.2	+	lncRNA	313	same	4746_ID	chr20	5388210	5388522	313	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11135	ENST00000611343.1_1	ENST00000619812.1_1	chr15	96682700	96683681	AC012409.3	-	lncRNA	chr15	96533810	96844219	AC012409.2	+	lncRNA	981	opposite	1378_ID	chr15	96682701	96683681	981	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11136	ENST00000611364.2_4	ENST00000636817.1_1	chr13	28241531	28254718	AL136439.1	-	lncRNA	chr13	28196011	28318374	POLR1D	+	protein_coding	13187	opposite	4912_ID	chr13	28241532	28254718	13187	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11146	ENST00000611618.1_3	ENST00000511331.5_1	chr5	180682146	180688119	TRIM52	-	protein_coding	chr5	180673522	180699168	CTC-338M12.4	+	lncRNA	6724	opposite	12783_ID	chr5	180682147	180688119	5973	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11152	ENST00000611726.1_1	ENST00000037243.7_2	chr16	75606082	75606583	AC025287.3	-	lncRNA	chr16	75600276	75611779	GABARAPL2	+	protein_coding	501	opposite	2077_ID	chr16	75606083	75606583	501	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11156	ENST00000611894.4_1	ENST00000661062.1_3	chr20	26169043	26177527	AL121904.1	+	lncRNA	chr20	26148452	26232147	MIR663AHG	-	lncRNA	8484	opposite	4770_ID	chr20	26169044	26177527	8484	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
11164	ENST00000612106.1_1	ENST00000560296.1_3	chr14	56772555	56773112	AL355073.2	+	lncRNA	chr14	56770207	56777479	AL355073.1	-	lncRNA	557	opposite	5312_ID	chr14	56772556	56773112	557	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11165	ENST00000612163.1_2	ENST00000355797.7_5	chr17	74705841	74706127	AC005837.4	+	lncRNA	chr17	74668632	74707037	MXRA7	-	protein_coding	286	opposite	368_ID	chr17	74705842	74706127	286	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11188	ENST00000612806.1_1	ENST00000288840.10_2	chr15	67032782	67033489	AC013564.1	+	lncRNA	chr15	66994573	67075187	SMAD6	+	protein_coding	707	same	1455_ID	chr15	67032783	67033489	707	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11196	ENST00000612923.1_1	ENST00000619812.1_1	chr15	96774125	96774374	AC012409.4	+	lncRNA	chr15	96533810	96844219	AC012409.2	+	lncRNA	249	same	1380_ID	chr15	96774126	96774374	249	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11197	ENST00000612943.1_1	ENST00000334287.3_2	chr15	65341525	65342140	AC013553.3	-	lncRNA	chr15	65337724	65345735	SLC51B	+	protein_coding	615	opposite	1453_ID	chr15	65341526	65342140	615	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11241	ENST00000613900.1_1	ENST00000622583.4_1	chr11	67121099	67121819	AP003419.2	+	lncRNA	chr11	67085341	67158905	RAD9A	+	processed_transcript	720	same	6256_ID	chr11	67121100	67121819	720	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11248	ENST00000614011.1_1	ENST00000602719.5_4	chr16	85730940	85731474	AC018695.6	-	lncRNA	chr16	85723775	85784735	C16orf74	-	protein_coding	534	same	1651_ID	chr16	85730941	85731474	534	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11264	ENST00000614509.1_1	ENST00000557398.2_3	chr15	93351680	93352287	AC106028.4	+	lncRNA	chr15	93162531	93353028	FAM174B	-	protein_coding	607	opposite	3630_ID	chr15	93351681	93352287	607	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11271	ENST00000614652.1_1	ENST00000619407.4_1	chr13	41803315	41803812	AL354696.1	-	lncRNA	chr13	41707074	41810822	AL354696.2	+	lncRNA	497	opposite	5276_ID	chr13	41803316	41803812	497	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11281	ENST00000614857.4_3	ENST00000662475.1_3	chr4	88896801	88904562	SPP1	+	protein_coding	chr4	88895536	88929629	AC131944.1	-	lncRNA	7777	opposite	12536_ID	chr4	88896802	88904562	7761	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
11282	ENST00000614874.1_1	ENST00000477087.1_1	chr12	12871906	12872455	AC008115.3	+	lncRNA	chr12	12867991	12874138	CDKN1B	+	processed_transcript	549	same	702_ID	chr12	12871907	12872455	549	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11294	ENST00000615176.1_1	ENST00000657016.1_1	chr13	53919345	53985015	AL450423.1	+	lncRNA	chr13	53781965	54374560	AL356295.1	+	lncRNA	65670	same	5659_ID	chr13	53919346	53985015	65670	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11297	ENST00000615261.1_1	ENST00000539874.1_1	chr12	21981293	21981498	AC008250.2	-	lncRNA	chr12	21980143	22040891	AC008250.1	+	lncRNA	205	opposite	716_ID	chr12	21981294	21981498	205	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11299	ENST00000615411.1_3	ENST00000258106.11_2	chr2	73160102	73161484	AC012366.1	-	lncRNA	chr2	73144647	73162020	EMX1	+	protein_coding	1382	opposite	1368_ID	chr2	73160103	73161484	1382	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
11330	ENST00000616012.1_1	ENST00000554907.1_3	chr14	66453684	66454165	AL391261.2	-	lncRNA	chr14	66424014	66471241	AL391261.1	-	lncRNA	481	same	5573_ID	chr14	66453685	66454165	481	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11331	ENST00000616071.1_1	ENST00000622583.4_1	chr11	67141886	67142403	AP003419.3	+	lncRNA	chr11	67085341	67158905	RAD9A	+	processed_transcript	517	same	6258_ID	chr11	67141887	67142403	517	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11340	ENST00000616257.1_3	ENST00000625258.1_4	chr1	145470667	145473700	AC243547.2	-	lncRNA	chr1	145457275	145507835	AC243547.3	-	protein_coding	3033	same	4277_ID	chr1	145470668	145473700	3033	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11345	ENST00000616366.1_1	ENST00000618753.4_2	chr13	44770141	44771434	AL589745.2	+	lncRNA	chr13	44684586	44814653	SMIM2-AS1	+	lncRNA	1293	same	5735_ID	chr13	44770142	44771434	1293	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11354	ENST00000616608.1_4	ENST00000619812.1_1	chr15	96623941	96627813	AC024337.2	-	lncRNA	chr15	96533810	96844219	AC012409.2	+	lncRNA	3872	opposite	2013_ID	chr15	96623942	96627813	3872	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11355	ENST00000616660.1_1	ENST00000659002.1_3	chr15	95768554	95769093	AC104260.1	-	lncRNA	chr15	95729862	95870269	LINC01197	-	lncRNA	539	same	3523_ID	chr15	95768555	95769093	539	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11368	ENST00000616901.1_1	ENST00000662611.1_1	chr18	77919634	77920296	AC139100.2	+	lncRNA	chr18	77905962	77937722	PARD6G-AS1	+	lncRNA	662	same	4203_ID	chr18	77919635	77920296	662	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11393	ENST00000617563.1_1	ENST00000558399.5_5	chr15	49635804	49636451	AC022306.2	+	lncRNA	chr15	49575902	49660066	GALK2	+	protein_coding	647	same	1845_ID	chr15	49635805	49636451	647	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11425	ENST00000618726.1_1	ENST00000398455.3_1	chr12	51347706	51348139	AC008121.3	-	lncRNA	chr12	51347704	51364289	HIGD1C	+	protein_coding	433	opposite	704_ID	chr12	51347707	51348139	433	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
11428	ENST00000618746.1_1	ENST00000548257.1_1	chr12	48754702	48755160	AC024257.4	+	lncRNA	chr12	48744727	48836194	AC090115.1	+	lncRNA	458	same	2004_ID	chr12	48754703	48755160	458	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11434	ENST00000618835.1_1	ENST00000479961.1_6	chr15	80212536	80214797	AC015871.3	-	lncRNA	chr15	80137536	80216086	ST20-MTHFS	-	protein_coding	2261	same	1491_ID	chr15	80212537	80214797	2261	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11444	ENST00000619110.1_1	ENST00000448814.7_7	chr10	112667240	112667940	AL158163.2	+	lncRNA	chr10	112658487	112678938	BBIP1	-	protein_coding	700	opposite	5104_ID	chr10	112667241	112667940	700	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11447	ENST00000619166.1_1	ENST00000361716.8_4	chr12	6575702	6576301	AC005840.4	+	lncRNA	chr12	6571402	6579843	VAMP1	-	protein_coding	599	opposite	371_ID	chr12	6575703	6576301	599	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11451	ENST00000619202.1_1	ENST00000656583.1_3	chr12	27852998	27853507	AC009509.4	+	lncRNA	chr12	27849320	27863736	AC009509.1	-	lncRNA	509	opposite	966_ID	chr12	27852999	27853507	509	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11461	ENST00000619490.1_1	ENST00000557398.2_3	chr15	93177534	93177895	AC091544.7	+	lncRNA	chr15	93162531	93353028	FAM174B	-	protein_coding	361	opposite	3001_ID	chr15	93177535	93177895	361	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11463	ENST00000619523.1_3	ENST00000503031.1	chr10	47135134	47138586	AC245041.1	-	lncRNA	chr10	47011752	47174018	LINC00842	-	lincRNA	3452	same	4303_ID	chr10	47135135	47138586	3452	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11473	ENST00000619655.4_3	ENST00000603067.5_1	chr17	34083268	34122711	MMP28	-	nonsense_mediated_decay	chr17	34040809	34165557	TAF15	+	retained_intron	39444	opposite	9151_ID	chr17	34083269	34122711	39443	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11491	ENST00000619930.1_1	ENST00000558399.5_5	chr15	49645681	49646231	AC022306.3	+	lncRNA	chr15	49575902	49660066	GALK2	+	protein_coding	550	same	1846_ID	chr15	49645682	49646231	550	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11492	ENST00000619963.1_1	ENST00000655150.1_3	chr16	898524	899065	AL031008.1	-	lncRNA	chr16	867488	912843	AL023882.1	+	lncRNA	541	opposite	4503_ID	chr16	898525	899065	541	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11511	ENST00000620327.1_1	ENST00000467603.1_3	chr20	36155043	36155462	AL109614.1	-	lncRNA	chr20	36130815	36156264	BLCAP	-	processed_transcript	419	same	4696_ID	chr20	36155044	36155462	419	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11514	ENST00000620420.1_1	ENST00000615968.1_2	chr4	90669433	90670305	AC097478.2	+	lncRNA	chr4	90668952	90677004	AC097478.3	+	lncRNA	872	same	3317_ID	chr4	90669434	90670305	872	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11544	ENST00000621095.1_1	ENST00000612023.1_1	chr16	85176301	85179607	AC026469.1	-	lncRNA	chr16	85170755	85183049	LINC02139	+	lncRNA	3306	opposite	2155_ID	chr16	85176302	85179607	3306	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
11546	ENST00000621212.1_1	ENST00000559531.1_3	chr15	91193861	91194334	AC021422.1	+	lncRNA	chr15	91163238	91260372	CRTC3-AS1	-	lncRNA	473	opposite	1788_ID	chr15	91193862	91194334	473	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11557	ENST00000621404.1_1	ENST00000534829.5_1	chr12	26426261	26426833	AC022509.4	-	lncRNA	chr12	26274984	26452223	SSPN	+	processed_transcript	572	opposite	1878_ID	chr12	26426262	26426833	572	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11577	ENST00000621730.1_1	ENST00000663845.1_1	chr18	44366661	44369260	AC090241.3	-	lncRNA	chr18	44336901	44382412	AC090241.2	+	lncRNA	2599	opposite	2886_ID	chr18	44366662	44369260	2599	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11593	ENST00000621929.1_2	ENST00000567194.5_7	chr16	75467733	75470290	AC009163.7	+	lncRNA	chr16	75446581	75498604	AC009163.5	-	protein_coding	2557	opposite	916_ID	chr16	75467734	75470290	2557	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11596	ENST00000621980.1_1	ENST00000448803.6_1	chr15	85165245	85166468	AC048382.6	-	lncRNA	chr15	85144235	85166947	ZSCAN2	+	protein_coding	1223	opposite	2315_ID	chr15	85165246	85166468	1223	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	3	3
11630	ENST00000622792.1_1	ENST00000548498.5_1	chr12	48162311	48163431	AC004241.4	+	lncRNA	chr12	48147698	48172954	SLC48A1	+	protein_coding	1120	same	119_ID	chr12	48162312	48163431	1120	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11656	ENST00000623581.1_1	ENST00000624802.1_3	chr5	140547811	140548474	AC244517.12	+	lncRNA	chr5	140480288	140553972	AC244517.2	-	lncRNA	663	opposite	4294_ID	chr5	140547812	140548474	663	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11663	ENST00000623849.1_4	ENST00000477339.5_1	chr11	4944603	4945569	OR51G1	-	protein_coding	chr11	4726156	5011060	MMP26	+	processed_transcript	966	opposite	9416_ID	chr11	4944604	4945569	966	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11679	ENST00000624102.1_1	ENST00000623741.3_3	chr5	140457653	140464064	AC244517.9	+	lncRNA	chr5	140430549	140475986	AC244517.5	-	lncRNA	6411	opposite	4300_ID	chr5	140457654	140464064	6411	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11699	ENST00000624651.1_1	ENST00000648258.1_1	chr10	94831728	94833223	AL358613.2	+	lncRNA	chr10	94823402	94837181	AL358613.3	+	lncRNA	1495	same	5461_ID	chr10	94831729	94833223	1495	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11715	ENST00000624936.2_3	ENST00000527297.1_1	chr11	150835	180404	AC240565.2	-	lncRNA	chr11	129278	186136	AC069287.3	+	lncRNA	29569	opposite	4269_ID	chr11	150836	180404	29569	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	3
11718	ENST00000624978.1_4	ENST00000477339.5_1	chr11	4824662	4825610	OR52R1	-	protein_coding	chr11	4726156	5011060	MMP26	+	processed_transcript	948	opposite	9453_ID	chr11	4824663	4825610	948	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11723	ENST00000625107.1_1	ENST00000560484.1_3	chr15	39542884	39547046	C15orf54	+	lncRNA	chr15	39178834	39713176	AC013652.1	-	lncRNA	4162	opposite	6474_ID	chr15	39542885	39547046	4162	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11724	ENST00000625129.1_5	ENST00000473970.3_4	chr10	104209593	104211300	C10orf95	-	protein_coding	chr10	104209572	104216054	RPARP-AS1	+	lncRNA	1707	opposite	6467_ID	chr10	104209594	104211300	1707	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
11739	ENST00000626198.1_1	ENST00000464588.1_3	chr1	45769581	45771291	LINC01144	+	lncRNA	chr1	45553746	45771881	ZSWIM5	-	processed_transcript	1710	opposite	7608_ID	chr1	45769582	45771291	1710	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
11743	ENST00000626321.1_3	ENST00000336769.9_1	chr22	48934711	48943199	Z84468.1	-	lncRNA	chr22	48885403	49246724	TAFA5	+	protein_coding	8488	opposite	12948_ID	chr22	48934712	48943199	8488	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11747	ENST00000626804.2_5	ENST00000505762.1_4	chr6	53843346	53912187	MLIP-AS1	-	lncRNA	chr6	53794779	53989452	MLIP	+	protein_coding	101178	opposite	9144_ID	chr6	53843347	53912187	68841	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
11753	ENST00000627370.1_1	ENST00000341446.9_6	chr12	125509979	125511956	THRIL	-	lncRNA	chr12	125478190	125515777	BRI3BP	+	protein_coding	1977	opposite	12684_ID	chr12	125509980	125511956	1977	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
11770	ENST00000629058.1_1	ENST00000420488.6_5	chr20	30309309	30311212	ABALON	+	lncRNA	chr20	30252265	30311792	BCL2L1	-	protein_coding	1903	opposite	7_ID	chr20	30309310	30311212	1903	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
11778	ENST00000629479.1_4	ENST00000492399.5_5	chr13	101189863	101239400	AL356966.1	-	lncRNA	chr13	101184748	101241782	GGACT	-	protein_coding	51406	same	5405_ID	chr13	101189864	101239400	49537	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
11800	ENST00000630920.1_1	ENST00000645438.1_1	chr8	128412643	128414395	CCAT2	+	lncRNA	chr8	128334427	128429455	POU5F1B	+	protein_coding	1752	same	6563_ID	chr8	128412644	128414395	1752	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11806	ENST00000632077.1_1	ENST00000585329.1_3	chr17	41994561	41995353	FAM215A	+	lncRNA	chr17	41991800	42000369	AC007993.3	-	lncRNA	792	opposite	6969_ID	chr17	41994562	41995353	792	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11819	ENST00000633875.4_6	ENST00000653858.1_1	chr16	75727790	75735359	DUXB	-	protein_coding	chr16	75681688	75795728	TERF2IP	+	protein_coding	7569	opposite	6862_ID	chr16	75727791	75735359	7569	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11844	ENST00000635518.1_1	ENST00000469481.1_1	chrX	123380098	123470690	TEX13D	+	processed_transcript	chrX	123094544	123556514	STAG2	+	processed_transcript	90615	same	12655_ID	chrX	123380099	123470690	90592	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11846	ENST00000635591.1_2	ENST00000437412.5_3	chr6	144326052	144329399	HYMAI	-	lncRNA	chr6	144261438	144385736	PLAGL1	-	protein_coding	3347	same	7320_ID	chr6	144326053	144329399	3347	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11847	ENST00000635645.1_1	ENST00000469481.1_1	chrX	123361717	123507047	SH2D1A	+	processed_transcript	chrX	123094544	123556514	STAG2	+	processed_transcript	145330	same	12056_ID	chrX	123361718	123507047	145330	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11851	ENST00000635820.1_3	ENST00000494295.1_3	chrX	134443405	134443585	ETDC	+	protein_coding	chrX	134382866	134478012	ZNF75D	-	processed_transcript	180	opposite	6937_ID	chrX	134443406	134443585	180	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11879	ENST00000637645.1_3	ENST00000445784.1_1	chr7	89945816	89950622	FAM237B	-	protein_coding	chr7	89941809	89951906	AC002064.1	+	lncRNA	4806	opposite	6978_ID	chr7	89945817	89950622	4806	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
11886	ENST00000637882.1_3	ENST00000558730.2_3	chr16	55355486	55356598	AC109462.3	-	lncRNA	chr16	55293880	55367500	AC109462.1	-	lncRNA	1112	same	3766_ID	chr16	55355487	55356598	1112	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11900	ENST00000638898.1_1	ENST00000674284.1_2	chr11	124659135	124662714	AP000866.6	-	lncRNA	chr11	124636393	124670602	MSANTD2	-	protein_coding	3579	same	6041_ID	chr11	124659136	124662714	3579	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11904	ENST00000639767.2_2	ENST00000589765.1_3	chr19	12912876	12924395	THSD8	+	nonsense_mediated_decay	chr19	12884972	12983554	HOOK2	-	processed_transcript	11551	opposite	12687_ID	chr19	12912877	12924395	11519	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11906	ENST00000640173.1_3	ENST00000653858.1_1	chr16	75694124	75710907	AC025287.4	-	protein_coding	chr16	75681688	75795728	TERF2IP	+	protein_coding	16783	opposite	2078_ID	chr16	75694125	75710907	16783	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11911	ENST00000640435.1_1	ENST00000650512.1_3	chr2	1556216	1558473	AC141930.2	+	lncRNA	chr2	1370005	1584519	AC105450.1	-	lncRNA	2257	opposite	4222_ID	chr2	1556217	1558473	2257	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11912	ENST00000640557.1_1	ENST00000641308.1_1	chr3	39194396	39196214	AC092053.2	+	lncRNA	chr3	39189771	39214443	AC092053.3	+	lncRNA	1818	same	3033_ID	chr3	39194397	39196214	1818	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11913	ENST00000640559.2_5	ENST00000653858.1_1	chr16	75748028	75760388	CPHXL	-	protein_coding	chr16	75681688	75795728	TERF2IP	+	protein_coding	12360	opposite	6700_ID	chr16	75748029	75760388	12360	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11921	ENST00000641114.1_2	ENST00000556750.5_3	chr12	55966251	55969396	OR2AP1	+	protein_coding	chr12	55828538	55979255	AC122685.1	-	lncRNA	3145	opposite	9379_ID	chr12	55966252	55969396	3145	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11928	ENST00000641223.1_3	ENST00000662798.1_3	chr1	247874737	247879948	OR6F1	-	processed_transcript	chr1	247803065	247924557	AL390860.1	+	lncRNA	5211	opposite	9470_ID	chr1	247874738	247879948	5211	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11932	ENST00000641416.1_4	ENST00000508616.1_1	chr3	97982095	97984106	OR5H6	+	protein_coding	chr3	97952494	98176742	AC117473.1	+	lncRNA	2105	same	9457_ID	chr3	97982096	97984106	2011	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11934	ENST00000641461.1_2	ENST00000637205.2_4	chr11	6884287	6895948	OR10A2	+	protein_coding	chr11	6843172	6948109	AC087280.2	-	lncRNA	11661	opposite	9342_ID	chr11	6884288	6895948	11661	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11935	ENST00000641490.1_2	ENST00000477339.5_1	chr11	4925012	4930692	OR51A7	+	protein_coding	chr11	4726156	5011060	MMP26	+	processed_transcript	5680	same	9400_ID	chr11	4925013	4930692	5680	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11936	ENST00000641504.1_5	ENST00000647690.1_4	chr11	74792797	74807921	OR2AT4	-	protein_coding	chr11	74781556	74808009	AP003175.1	-	lncRNA	15124	same	9380_ID	chr11	74792798	74807921	15124	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
11937	ENST00000641516.1_2	ENST00000556750.5_3	chr12	55837852	55847131	OR6C2	+	protein_coding	chr12	55828538	55979255	AC122685.1	-	lncRNA	9279	opposite	9466_ID	chr12	55837853	55847131	9279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11946	ENST00000641569.1_4	ENST00000556750.5_3	chr12	55943385	55949616	OR6C4	+	protein_coding	chr12	55828538	55979255	AC122685.1	-	lncRNA	6231	opposite	9467_ID	chr12	55943386	55949616	6231	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11953	ENST00000641801.1_1	ENST00000409066.1_5	chr2	228481713	228483371	SCYGR4	+	protein_coding	chr2	228474806	228498036	C2orf83	-	processed_transcript	1658	opposite	12023_ID	chr2	228481714	228483371	1658	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11959	ENST00000641898.1_4	ENST00000477339.5_1	chr11	4964060	4968835	OR51A4	-	protein_coding	chr11	4726156	5011060	MMP26	+	processed_transcript	4775	opposite	9399_ID	chr11	4964061	4968835	4775	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11961	ENST00000641926.1_4	ENST00000477339.5_1	chr11	4933817	4940580	OR51G2	-	protein_coding	chr11	4726156	5011060	MMP26	+	processed_transcript	6763	opposite	9417_ID	chr11	4933818	4940580	6763	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11967	ENST00000642029.1_2	ENST00000409066.1_5	chr2	228479253	228479556	SCYGR3	-	protein_coding	chr2	228474806	228498036	C2orf83	-	processed_transcript	303	same	12022_ID	chr2	228479254	228479556	303	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
11968	ENST00000642051.1_1	ENST00000377154.1_3	chr6	29363407	29365785	OR12D2	+	protein_coding	chr6	29323006	29399744	OR5V1	-	protein_coding	2378	opposite	9351_ID	chr6	29363408	29365785	2378	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11969	ENST00000642080.1_4	ENST00000431862.1_3	chr1	159407634	159412868	OR10J1	+	protein_coding	chr1	159315955	159438858	AL513323.1	-	lncRNA	5234	opposite	9348_ID	chr1	159407635	159412868	5234	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11974	ENST00000642119.1_4	ENST00000662798.1_3	chr1	247834113	247843041	OR13G1	-	protein_coding	chr1	247803065	247924557	AL390860.1	+	lncRNA	8928	opposite	9355_ID	chr1	247834114	247843041	8928	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11993	ENST00000643867.1_3	ENST00000420404.2_2	chr2	16475712	16483558	AC010745.5	-	lncRNA	chr2	16405314	16515246	AC010745.2	+	lncRNA	7846	opposite	1137_ID	chr2	16475713	16483558	7846	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
11995	ENST00000644293.1_1	ENST00000494295.1_3	chrX	134461683	134464669	AL590282.2	+	lncRNA	chrX	134382866	134478012	ZNF75D	-	processed_transcript	2986	opposite	5756_ID	chrX	134461684	134464669	2986	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12007	ENST00000646920.1_3	ENST00000642633.1_3	chr9	34487	37269	FAM138C	-	lncRNA	chr9	24891	73865	WASHC1	-	protein_coding	2876	same	6961_ID	chr9	34488	37269	2782	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12041	ENST00000648110.1_1	ENST00000606382.1_3	chr2	59661686	59669325	AC007179.1	+	lncRNA	chr2	59445814	60327335	AC007100.1	-	lncRNA	7710	opposite	517_ID	chr2	59661687	59669325	7639	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12046	ENST00000648190.1_3	ENST00000565468.6_3	chr7	141091954	141096317	AC005692.3	-	lncRNA	chr7	140773863	141180180	TMEM178B	+	protein_coding	4363	opposite	328_ID	chr7	141091955	141096317	4363	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12070	ENST00000648464.2_2	ENST00000606382.1_3	chr2	60284735	60298262	AC007132.1	+	lncRNA	chr2	59445814	60327335	AC007100.1	-	lncRNA	13527	opposite	515_ID	chr2	60284736	60298262	13527	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12072	ENST00000648484.1_1	ENST00000493380.5_3	chr10	14413999	14419585	AL139405.1	+	lncRNA	chr10	14124945	14504093	FRMD4A	-	protein_coding	5586	opposite	5047_ID	chr10	14414000	14419585	5586	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12101	ENST00000648863.1_1	ENST00000663591.1_3	chr6	156671712	156711380	AL512658.2	+	lncRNA	chr6	156232328	156718723	AL589693.1	-	lncRNA	39668	opposite	5696_ID	chr6	156671713	156711380	39668	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12109	ENST00000648975.1_3	ENST00000649444.1_1	chr5	40475009	40490532	AC114977.2	-	lncRNA	chr5	40463663	40504665	AC114977.1	+	lncRNA	15523	opposite	3882_ID	chr5	40475010	40490532	15523	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
12110	ENST00000648998.1_1	ENST00000664227.1_3	chr11	71456376	71458097	AP003498.2	+	lncRNA	chr11	71384930	71524540	ALG1L9P	-	lncRNA	40573	opposite	6265_ID	chr11	71456377	71458097	1721	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12129	ENST00000649345.1_3	ENST00000512467.6_2	chr5	143818766	143848034	AC109441.1	-	lncRNA	chr5	143550436	143865249	KCTD16	+	protein_coding	29268	opposite	3755_ID	chr5	143818767	143848034	29268	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12132	ENST00000649387.1_1	ENST00000670008.1_3	chr2	8628549	8645157	AC092617.1	+	lncRNA	chr2	8601832	8733033	LINC01814	-	lncRNA	16608	opposite	3109_ID	chr2	8628550	8645157	16608	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12138	ENST00000649504.1_1	ENST00000338487.5_3	chr10	76801633	76815512	AC018511.6	+	lncRNA	chr10	76797593	76818272	DUSP29	-	protein_coding	13879	opposite	1626_ID	chr10	76801634	76815512	13879	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
12148	ENST00000649683.1_1	ENST00000562153.5_4	chr16	72097046	72111145	HPR	+	nonsense_mediated_decay	chr16	72078187	72127456	TXNL4B	-	protein_coding	14099	opposite	7286_ID	chr16	72097047	72111145	14099	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12172	ENST00000650320.1_1	ENST00000619812.1_1	chr15	96779162	96780239	LINC02157	+	lncRNA	chr15	96533810	96844219	AC012409.2	+	lncRNA	1226	same	7738_ID	chr15	96779163	96780239	1077	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12214	ENST00000651116.1_1	ENST00000658435.1_3	chr4	134978622	135006661	AC096763.1	+	lncRNA	chr4	134947819	135248644	AC015631.1	-	lncRNA	42040	opposite	3297_ID	chr4	134978623	135006661	28039	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12229	ENST00000651499.1_1	ENST00000668553.1_1	chr20	5426483	5454853	AL121757.1	+	lncRNA	chr20	5298913	5483835	AL121757.2	+	lncRNA	29646	same	4745_ID	chr20	5426484	5454853	28370	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12240	ENST00000651737.1_1	ENST00000559468.1_3	chr15	99557754	99574283	LUNAR1	+	lncRNA	chr15	99497377	99646030	AC036108.1	-	lncRNA	16529	opposite	7883_ID	chr15	99557755	99574283	16529	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12245	ENST00000651868.1_1	ENST00000527783.1_1	chr12	14958041	14961111	AC007655.2	+	lncRNA	chr12	14956610	15059520	C12orf60	+	processed_transcript	3070	same	624_ID	chr12	14958042	14961111	3070	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12247	ENST00000651931.1_2	ENST00000506480.5_3	chr4	88529680	88538025	DSPP	+	protein_coding	chr4	88489186	88653522	AC093895.1	-	lncRNA	8345	opposite	6854_ID	chr4	88529681	88538025	8345	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12272	ENST00000652461.1_3	ENST00000651233.1_1	chr5	180260927	180262726	AC022413.2	-	lncRNA	chr5	180257947	180266742	LINC00847	+	lncRNA	1799	opposite	1859_ID	chr5	180260928	180262726	1799	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
12290	ENST00000652709.1_3	ENST00000493263.1_1	chr20	2088545	2090637	AL359916.1	-	lncRNA	chr20	2083536	2157684	STK35	+	nonsense_mediated_decay	2092	opposite	5503_ID	chr20	2088546	2090637	2092	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12295	ENST00000652795.1_1	ENST00000655093.1_3	chr20	21070349	21073180	AL121759.2	+	lncRNA	chr20	21066216	21086994	LINC00237	-	lncRNA	2844	opposite	4748_ID	chr20	21070350	21073180	2831	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12321	ENST00000653440.1_1	ENST00000561490.5_4	chr15	52971670	52982274	AC009754.2	+	lncRNA	chr15	52903821	53002014	FAM214A	-	protein_coding	10604	opposite	993_ID	chr15	52971671	52982274	10604	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12329	ENST00000653640.1_3	ENST00000664430.1_1	chr10	91818817	91858840	AL139340.1	-	lncRNA	chr10	91613351	91985200	LINC01374	+	lncRNA	40023	opposite	5039_ID	chr10	91818818	91858840	40023	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12336	ENST00000653840.1_3	ENST00000657016.1_1	chr13	53897918	53905200	AL450423.2	-	lncRNA	chr13	53781965	54374560	AL356295.1	+	lncRNA	7282	opposite	5660_ID	chr13	53897919	53905200	7282	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12343	ENST00000654130.1_3	ENST00000586645.5_3	chr19	19868759	19885618	AC011477.8	+	lncRNA	chr19	19868174	19887202	LINC00663	-	lncRNA	16859	opposite	1244_ID	chr19	19868760	19885618	16859	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
12345	ENST00000654195.1_4	ENST00000657930.1_3	chr3	30563155	30567725	AC116035.1	-	lncRNA	chr3	30560324	30568685	LINC01985	+	lncRNA	4591	opposite	3893_ID	chr3	30563156	30567725	4570	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
12358	ENST00000654582.1_4	ENST00000512905.6_5	chr3	98291904	98297075	AC021660.4	-	lncRNA	chr3	98239976	98304342	AC021660.3	-	nonsense_mediated_decay	5171	same	1799_ID	chr3	98291905	98297075	5171	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12388	ENST00000655224.1_1	ENST00000651182.1_3	chr21	47027299	47029108	AL133493.2	+	lncRNA	chr21	47016277	47045589	AL133493.1	-	lncRNA	1809	opposite	4866_ID	chr21	47027300	47029108	1809	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12391	ENST00000655242.1_3	ENST00000658479.1_3	chr4	34142219	34182351	AC110790.1	-	lncRNA	chr4	34122463	34336973	LINC02484	-	lncRNA	40132	same	3797_ID	chr4	34142220	34182351	40132	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12400	ENST00000655459.1_1	ENST00000656346.1_3	chr6	6725268	6733424	AL031123.5	+	lncRNA	chr6	6692973	6739179	AL031123.1	-	lncRNA	8156	opposite	4507_ID	chr6	6725269	6733424	8156	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12403	ENST00000655526.1_1	ENST00000321800.11_3	chr17	71782813	71797105	LINC02092	+	lncRNA	chr17	71746468	71824659	LINC00469	-	lncRNA	14292	opposite	7723_ID	chr17	71782814	71797105	14292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12421	ENST00000655902.1_1	ENST00000548143.1_3	chr22	31848866	31860290	AL096701.3	+	lncRNA	chr22	31822726	31924726	DRG1	+	nonsense_mediated_decay	11424	same	4684_ID	chr22	31848867	31860290	11424	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12425	ENST00000655972.1_3	ENST00000588094.1_3	chr19	44401362	44402685	AC006213.7	-	lncRNA	chr19	44385791	44405537	ZNF404	-	processed_transcript	1323	same	441_ID	chr19	44401363	44402685	1323	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12434	ENST00000656038.1_1	ENST00000447289.1_1	chr2	217685799	217696633	AC007563.3	+	lncRNA	chr2	217559186	217858722	AC007563.2	+	lncRNA	10834	same	606_ID	chr2	217685800	217696633	10834	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12456	ENST00000656674.1_1	ENST00000557966.1_1	chr15	69278133	69291018	AC027088.5	+	lncRNA	chr15	69222842	69321229	AC027088.1	+	retained_intron	12885	same	2190_ID	chr15	69278134	69291018	12885	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12500	ENST00000657544.1_3	ENST00000659523.1_1	chr6	2353660	2386344	AL031768.2	-	lncRNA	chr6	2245969	2526210	GMDS-DT	+	lncRNA	32684	opposite	4559_ID	chr6	2353661	2386344	32684	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12501	ENST00000657557.1_4	ENST00000262244.6_4	chr9	27495854	27498249	AL451123.2	-	lncRNA	chr9	27325206	27529812	MOB3B	-	protein_coding	2395	same	5672_ID	chr9	27495855	27498249	2395	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12508	ENST00000657664.1_1	ENST00000664278.1_3	chr3	115137708	115157397	AC026341.3	+	lncRNA	chr3	115132322	115205296	AC026341.2	-	lncRNA	19689	opposite	2133_ID	chr3	115137709	115157397	19689	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
12515	ENST00000657815.1_1	ENST00000537250.5_3	chr12	65982890	66006780	LINC02454	+	lncRNA	chr12	65860599	66035978	AC025419.1	-	lncRNA	23890	opposite	7776_ID	chr12	65982891	66006780	23890	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12542	ENST00000658253.1_3	ENST00000359735.7_1	chr7	64262335	64264495	AC073349.4	-	lncRNA	chr7	64254765	64294059	ZNF138	+	protein_coding	2160	opposite	2524_ID	chr7	64262336	64264495	2160	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12567	ENST00000658628.1_1	ENST00000606382.1_3	chr2	60005819	60018791	AC007100.2	+	lncRNA	chr2	59445814	60327335	AC007100.1	-	lncRNA	12972	opposite	506_ID	chr2	60005820	60018791	12972	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12572	ENST00000658714.1_2	ENST00000514861.5_3	chr5	175399608	175414669	THOC3-AS1	+	lncRNA	chr5	175386885	175461683	THOC3	-	protein_coding	15061	opposite	12680_ID	chr5	175399609	175414669	15061	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12580	ENST00000658878.1_1	ENST00000660403.1_3	chr1	184633415	184637669	AL713852.2	+	lncRNA	chr1	184576732	184638737	AL713852.1	-	lncRNA	4254	opposite	5890_ID	chr1	184633416	184637669	4254	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12589	ENST00000659001.1_1	ENST00000312006.5_4	chr11	65810768	65811852	AP006287.3	+	lncRNA	chr11	65808235	65816632	GAL3ST3	-	protein_coding	1084	opposite	6311_ID	chr11	65810769	65811852	1084	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
12605	ENST00000659341.1_4	ENST00000649723.1_3	chr8	38400793	38411266	AC069120.1	-	lncRNA	chr8	38369184	38418457	C8orf86	-	lncRNA	17602	same	2468_ID	chr8	38400794	38411266	10473	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12616	ENST00000659487.1_1	ENST00000636877.1_3	chr11	110967878	110976725	AP003973.3	+	lncRNA	chr11	110962768	111050365	LINC02550	-	lncRNA	8847	opposite	6275_ID	chr11	110967879	110976725	8847	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12626	ENST00000659723.1_1	ENST00000449143.2_1	chr6	20265950	20307431	AL158198.2	+	lncRNA	chr6	20212317	20317970	AL158198.1	+	lncRNA	41481	same	5110_ID	chr6	20265951	20307431	41481	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
12636	ENST00000660029.1_3	ENST00000619812.1_1	chr15	96714803	96717568	AC012409.1	+	lncRNA	chr15	96533810	96844219	AC012409.2	+	lncRNA	2765	same	1375_ID	chr15	96714804	96717568	2765	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12639	ENST00000660063.1_3	ENST00000256474.3_2	chr3	10191669	10195010	AC034193.1	-	lncRNA	chr3	10183461	10195351	VHL	+	protein_coding	3341	opposite	2256_ID	chr3	10191670	10195010	3341	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
12646	ENST00000660178.1_1	ENST00000650395.1_3	chr2	60610275	60612929	AC007381.1	+	lncRNA	chr2	60586228	60666963	MIR4432HG	-	lncRNA	2654	opposite	557_ID	chr2	60610276	60612929	2654	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12658	ENST00000660433.1_3	ENST00000653254.1_1	chr2	66923321	66930384	LINC01797	-	lncRNA	chr2	66918571	66958355	LINC01798	+	lncRNA	7063	opposite	7680_ID	chr2	66923322	66930384	7063	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12659	ENST00000660474.1_1	ENST00000505103.5_3	chr4	187247455	187257816	AC109517.1	+	lncRNA	chr4	187207247	187422151	F11-AS1	-	lncRNA	10361	opposite	3772_ID	chr4	187247456	187257816	10361	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12665	ENST00000660720.1_3	ENST00000486697.2_8	chr6	167578052	167580721	AL121935.3	-	lncRNA	chr6	167562967	167585765	TCP10L2	+	protein_coding	2669	opposite	4785_ID	chr6	167578053	167580721	2669	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12676	ENST00000660900.1_1	ENST00000650150.1_3	chr5	90576088	90577460	AC123595.2	+	lncRNA	chr5	90447027	90610219	LUCAT1	-	lncRNA	1372	opposite	3992_ID	chr5	90576089	90577460	1372	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12702	ENST00000661396.1_3	ENST00000502600.5_3	chr2	201576257	201599909	LINC01792	-	lncRNA	chr2	201560639	201612763	AOX3P-AOX2P	+	lncRNA	23652	opposite	7678_ID	chr2	201576258	201599909	23652	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12704	ENST00000661446.1_1	ENST00000659739.1_3	chr3	156799526	156806336	LINC02029	+	lncRNA	chr3	156799457	156846384	LINC00880	-	lncRNA	6810	opposite	7716_ID	chr3	156799527	156806336	6810	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	3
12718	ENST00000661871.1_3	ENST00000649978.1_1	chr2	40847806	40866772	AC007317.2	-	lncRNA	chr2	40818424	40906744	AC007317.1	+	lncRNA	18966	opposite	543_ID	chr2	40847807	40866772	18966	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12725	ENST00000661978.1_3	ENST00000491853.5_1	chr1	156737896	156739025	AL590666.5	-	lncRNA	chr1	156720401	156761584	PRCC	+	processed_transcript	1129	opposite	5776_ID	chr1	156737897	156739025	1129	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12731	ENST00000662093.1_3	ENST00000508175.5_2	chr4	37456319	37478023	AC022463.1	-	lncRNA	chr4	37455609	37625117	C4orf19	+	protein_coding	21704	opposite	1868_ID	chr4	37456320	37478023	21704	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12750	ENST00000662587.1_3	ENST00000656703.1_1	chr16	34738740	34740938	AC018558.1	-	lncRNA	chr16	34733864	34756836	AC018558.7	+	lncRNA	2198	opposite	1637_ID	chr16	34738741	34740938	2198	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12765	ENST00000662873.1_3	ENST00000661387.1_1	chr4	163727521	163765842	AC021134.2	-	lncRNA	chr4	163626551	163828580	AC021134.1	+	lncRNA	38321	opposite	1780_ID	chr4	163727522	163765842	38321	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12766	ENST00000662877.1_3	ENST00000542998.5_1	chr12	4913695	4939913	AC005833.2	-	lncRNA	chr12	4872509	4960169	GALNT8	+	protein_coding	26249	opposite	367_ID	chr12	4913696	4939913	26218	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12786	ENST00000663233.1_1	ENST00000661416.1_3	chr10	122602032	122604658	AL391425.1	+	lncRNA	chr10	122519409	122610721	WDR11-AS1	-	lncRNA	2626	opposite	5579_ID	chr10	122602033	122604658	2626	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12788	ENST00000663266.1_1	ENST00000652791.1_1	chr2	45400860	45403074	AC009236.1	+	lncRNA	chr2	45396754	45438812	AC009236.2	+	lncRNA	2214	same	925_ID	chr2	45400861	45403074	2214	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12793	ENST00000663309.1_1	ENST00000659453.1_3	chr8	20880786	20887879	AC103719.1	+	lncRNA	chr8	20809979	21155679	AC021613.1	-	lncRNA	7093	opposite	3460_ID	chr8	20880787	20887879	7093	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12797	ENST00000663457.1_3	ENST00000649048.1_1	chr3	107560508	107601097	LINC00635	-	lncRNA	chr3	107553432	107647388	LINC00636	+	lncRNA	42023	opposite	7569_ID	chr3	107560509	107601097	40589	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12829	ENST00000664151.1_3	ENST00000415434.5_1	chr2	242979866	242983652	AC093642.6	-	lncRNA	chr2	242823516	243020873	LINC01237	+	lncRNA	3786	opposite	3233_ID	chr2	242979867	242983652	3786	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12831	ENST00000664194.1_4	ENST00000421143.6_3	chr20	10298536	10299401	AL023913.1	-	lncRNA	chr20	10006722	10349367	SNAP25-AS1	-	lncRNA	44342	same	4498_ID	chr20	10298537	10299401	865	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12833	ENST00000664236.1_3	ENST00000456026.1_1	chr1	218220284	218222563	AL355526.2	-	lncRNA	chr1	218216846	218232482	LINC01653	+	lncRNA	2279	opposite	5346_ID	chr1	218220285	218222563	2279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12844	ENST00000664574.1_3	ENST00000650579.1_1	chr8	58801766	58846888	AC012103.1	-	lncRNA	chr8	58768058	58896673	LINC01602	+	lncRNA	45355	opposite	1333_ID	chr8	58801767	58846888	45122	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12854	ENST00000664733.1_3	ENST00000675861.1_1	chr14	29252114	29254899	LINC02282	-	lncRNA	chr14	29234845	29261490	AL049777.1	+	lncRNA	2890	opposite	7754_ID	chr14	29252115	29254899	2785	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12864	ENST00000664895.1_3	ENST00000310380.11_4	chr3	194981360	194984357	AC090018.2	+	lncRNA	chr3	194789012	194991888	XXYLT1	-	protein_coding	2997	opposite	2864_ID	chr3	194981361	194984357	2997	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12886	ENST00000665205.1_1	ENST00000661600.1_3	chr8	74270942	74276447	AC111149.2	+	lncRNA	chr8	74239225	74282817	AC111149.1	-	lncRNA	5543	opposite	3805_ID	chr8	74270943	74276447	5505	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
12889	ENST00000665304.1_1	ENST00000454387.1_3	chr22	27703762	27714462	LINC02554	+	lncRNA	chr22	27703443	27714499	AL020994.1	-	lncRNA	10725	opposite	7785_ID	chr22	27703763	27714462	10700	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
12893	ENST00000665362.1_1	ENST00000523081.2_4	chr8	41424376	41426160	AC009630.4	+	lncRNA	chr8	41367111	41435940	AC009630.1	-	lncRNA	1784	opposite	982_ID	chr8	41424377	41426160	1784	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12897	ENST00000665497.1_1	ENST00000548143.1_3	chr22	31886135	31887008	AL096701.4	+	lncRNA	chr22	31822726	31924726	DRG1	+	nonsense_mediated_decay	873	same	4685_ID	chr22	31886136	31887008	873	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12939	ENST00000666587.1_3	ENST00000659453.1_3	chr8	21024750	21027648	AC021613.3	-	lncRNA	chr8	20809979	21155679	AC021613.1	-	lncRNA	2898	same	1796_ID	chr8	21024751	21027648	2898	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12958	ENST00000666915.1_3	ENST00000421143.6_3	chr20	10153348	10167388	AL354824.2	+	lncRNA	chr20	10006722	10349367	SNAP25-AS1	-	lncRNA	14040	opposite	5290_ID	chr20	10153349	10167388	14040	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
12984	ENST00000667601.1_3	ENST00000508328.6_2	chr4	57976712	57977566	AC111197.1	+	lncRNA	chr4	57975945	58073625	IGFBP7-AS1	+	lncRNA	854	same	3810_ID	chr4	57976713	57977566	854	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
13006	ENST00000667929.1_3	ENST00000519291.5_1	chr8	142134820	142140163	AC040970.1	-	lncRNA	chr8	142127376	142151375	DENND3	+	protein_coding	5348	opposite	2296_ID	chr8	142134821	142140163	5343	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
13009	ENST00000668001.1_4	ENST00000556347.1_1	chr14	62022990	62037327	LINC01303	-	lncRNA	chr14	61995845	62124682	AL355916.3	+	protein_coding	14381	opposite	7629_ID	chr14	62022991	62037327	14337	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
13047	ENST00000668938.1_3	ENST00000668344.1_1	chr14	86473236	86529325	LINC02316	-	lncRNA	chr14	86401110	86627551	LINC02328	+	lncRNA	56089	opposite	7760_ID	chr14	86473237	86529325	56089	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
13056	ENST00000669093.1_1	ENST00000521680.5_3	chr4	98287835	98413050	STPG2-AS1	+	lncRNA	chr4	98255785	98554962	AC034154.1	-	lncRNA	125219	opposite	12570_ID	chr4	98287836	98413050	125215	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
13086	ENST00000669663.1_1	ENST00000665550.1_1	chr6	11417439	11481557	AL445430.1	+	lncRNA	chr6	11414868	11506598	AL445430.2	+	lncRNA	64118	same	5623_ID	chr6	11417440	11481557	64118	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
13124	ENST00000670639.1_3	ENST00000524885.2_2	chr11	17716812	17718541	LINC02729	-	lncRNA	chr11	17716556	17719103	AC124301.1	+	lncRNA	1729	opposite	7795_ID	chr11	17716813	17718541	1729	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
13132	ENST00000670848.1_3	ENST00000554725.1_1	chr14	57420884	57527433	AL137100.3	-	lncRNA	chr14	57279988	57618895	OTX2-AS1	+	lncRNA	109708	opposite	4940_ID	chr14	57420885	57527433	106549	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
13141	ENST00000671014.1_1	ENST00000555283.1_6	chr14	21055817	21075380	AL163195.2	+	lncRNA	chr14	21052498	21077954	AL163195.3	-	protein_coding	19578	opposite	5227_ID	chr14	21055818	21075380	19563	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
13163	ENST00000671426.1_1	ENST00000666840.1_3	chr4	9078674	9094256	AC073648.7	+	lncRNA	chr4	9036244	9382995	AC108519.1	-	lncRNA	15582	opposite	2543_ID	chr4	9078675	9094256	15582	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
13164	ENST00000671429.1_3	ENST00000434897.2_2	chr2	25223015	25233143	AC013267.1	-	lncRNA	chr2	25194985	25262585	DNAJC27-AS1	+	lncRNA	10128	opposite	1428_ID	chr2	25223016	25233143	10128	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
13168	ENST00000671460.1_3	ENST00000534829.5_1	chr12	26292181	26320674	AC022509.5	-	lncRNA	chr12	26274984	26452223	SSPN	+	processed_transcript	28493	opposite	1879_ID	chr12	26292182	26320674	28493	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
13173	ENST00000671579.1_3	ENST00000652038.1_1	chr20	55691621	55694599	AL157414.4	-	lncRNA	chr20	55685695	55697801	AL157414.1	+	lncRNA	2978	opposite	5065_ID	chr20	55691622	55694599	2978	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
13186	ENST00000673748.1_1	ENST00000490145.1_3	chr3	119385082	119389535	AC023494.1	+	lncRNA	chr3	119373359	119395769	COX17	-	nonsense_mediated_decay	4453	opposite	1954_ID	chr3	119385083	119389535	4453	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
13191	ENST00000673949.1_2	ENST00000659878.1_1	chr4	90503657	90625741	AC097478.4	-	lncRNA	chr4	90332110	90647798	AC093866.1	+	lncRNA	122084	opposite	3320_ID	chr4	90503658	90625741	122084	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	3
13193	ENST00000674056.1_3	ENST00000598623.1_2	chr2	105469744	105475032	POU3F3	+	protein_coding	chr2	105469742	105542510	AC018730.1	+	lncRNA	5288	same	9601_ID	chr2	105469745	105475032	5288	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
13196	ENST00000674142.1_2	ENST00000409338.5_6	chrX	100648260	100662978	GLA	-	retained_intron	chrX	100645998	100667285	RPL36A-HNRNPH2	+	protein_coding	14740	opposite	7130_ID	chrX	100648261	100662978	14718	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
25100	ENST00000219919.9_2	ENST00000558239.5_3	chr15	58430579	58478110	AQP9	+	protein_coding	chr15	58306055	58766112	ALDH1A2	-	protein_coding	47743	opposite	6326_ID	chr15	58430580	58478110	47531	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
18510	ENST00000267015.4_4	ENST00000552785.1_1	chr12	54756228	54758270	GPR84	-	protein_coding	chr12	54747575	54860769	AC079313.1	+	lncRNA	2043	opposite	7168_ID	chr12	54756229	54758270	2042	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
28810	ENST00000295549.9_4	ENST00000652995.1_1	chr2	177494299	177502659	LINC01116	-	lncRNA	chr2	177359982	177520695	LINC01117	+	lncRNA	8360	opposite	7604_ID	chr2	177494300	177502659	8360	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
31610	ENST00000300213.9_2	ENST00000563128.5_4	chr15	43477600	43489375	CCNDBP1	+	protein_coding	chr15	43471990	43498679	AC068724.4	-	lncRNA	12060	opposite	6586_ID	chr15	43477601	43489375	11775	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
45710	ENST00000319374.4_4	ENST00000557408.5_4	chr14	77597612	77608134	ZDHHC22	-	protein_coding	chr14	77582910	77685227	TMEM63C	+	protein_coding	11465	opposite	13011_ID	chr14	77597613	77608134	10522	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
50810	ENST00000325509.4_3	ENST00000521467.5_1	chr8	72753783	72756703	MSC	-	protein_coding	chr8	72740401	72914640	MSC-AS1	+	lncRNA	2920	opposite	9174_ID	chr8	72753784	72756703	2920	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
56710	ENST00000332503.6_4	ENST00000472863.5_4	chr17	46652868	46655712	HOXB4	-	protein_coding	chr17	46627173	46667603	HOXB3	-	protein_coding	2844	same	7263_ID	chr17	46652869	46655712	2844	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
60210	ENST00000337225.5_4	ENST00000509372.1_1	chr5	134906372	134914969	CXCL14	-	protein_coding	chr5	134895266	134970564	AC034206.1	+	lncRNA	8601	opposite	6745_ID	chr5	134906373	134914969	8597	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
60910	ENST00000338010.9_5	ENST00000552785.1_1	chr12	54762923	54785082	ZNF385A	-	protein_coding	chr12	54747575	54860769	AC079313.1	+	lncRNA	22166	opposite	13042_ID	chr12	54762924	54785082	22159	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
79410	ENST00000362224.1	ENST00000436803.6_4	chr6	72086662	72086734	MIR30C2	-	miRNA	chr6	72053179	72130024	LINC00472	-	lncRNA	72	same	8229_ID	chr6	72086663	72086734	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
100310	ENST00000363475.2	ENST00000619522.2_4	chr12	7271380	7271487	RNU6-485P	+	snRNA	chr12	7268331	7281485	RBP5	-	processed_transcript	107	opposite	11276_ID	chr12	7271381	7271487	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
101310	ENST00000363506.1	ENST00000430070.7_5	chr11	47598022	47598140	RNU5E-10P	-	snRNA	chr11	47593748	47600522	KBTBD4	-	protein_coding	118	same	10744_ID	chr11	47598023	47598140	118	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
126510	ENST00000364814.1	ENST00000543494.1_3	chr11	67129884	67130179	RN7SKP239	+	misc_RNA	chr11	67119042	67141055	AP003419.1	-	protein_coding	295	opposite	9847_ID	chr11	67129885	67130179	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
127910	ENST00000364884.1	ENST00000375640.7_4	chr6	31804852	31804919	SNORD52	+	snoRNA	chr6	31802384	31807538	SNHG32	+	lncRNA	67	same	12418_ID	chr6	31804853	31804919	67	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
129510	ENST00000364953.1	ENST00000375640.7_4	chr6	31803039	31803103	SNORD48	+	snoRNA	chr6	31802384	31807538	SNHG32	+	lncRNA	64	same	12413_ID	chr6	31803040	31803103	64	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
13851	ENST00000365559.1	ENST00000412979.1_3	chr2	128229809	128229991	RNU4-48P	+	snRNA	chr2	128193782	128244194	IWS1	-	nonsense_mediated_decay	182	opposite	10686_ID	chr2	128229810	128229991	182	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
14081	ENST00000366259.2_3	ENST00000626308.1_2	chr13	100151980	100153306	LINC00449	-	lncRNA	chr13	100150990	100153504	AL139035.1	+	lncRNA	1326	opposite	7553_ID	chr13	100151981	100153306	1326	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
14581	ENST00000369805.7_4	ENST00000431955.1_1	chr1	110292702	110306649	EPS8L3	-	protein_coding	chr1	110268441	110317874	AL158847.1	+	lncRNA	13948	opposite	6914_ID	chr1	110292703	110306649	13947	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
18121	ENST00000384292.1	ENST00000581856.5_3	chr18	28925324	28925430	RNU6-167P	-	snRNA	chr18	28923330	29006890	DSG1-AS1	-	lncRNA	106	same	11045_ID	chr18	28925325	28925430	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
19281	ENST00000384615.1	ENST00000423268.1_3	chr6	148599807	148599914	RNU6-1222P	+	snRNA	chr6	148558720	148604544	AL513164.1	-	lncRNA	107	opposite	10922_ID	chr6	148599808	148599914	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
19781	ENST00000384765.1	ENST00000429711.7_5	chr3	12881810	12881949	SNORA7A	-	snoRNA	chr3	12875983	12883064	RPL32	-	protein_coding	139	same	12211_ID	chr3	12881811	12881949	139	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
21511	ENST00000385070.1	ENST00000416167.7_7	chr11	2155363	2155439	MIR483	-	miRNA	chr11	2150346	2160619	IGF2	-	protein_coding	76	same	8790_ID	chr11	2155364	2155439	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
21661	ENST00000385092.1	ENST00000436803.6_4	chr6	72113253	72113324	MIR30A	-	miRNA	chr6	72053179	72130024	LINC00472	-	lncRNA	71	same	8226_ID	chr6	72113254	72113324	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
22541	ENST00000385289.1	ENST00000417354.3_4	chr1	172113674	172113784	MIR199A2	-	miRNA	chr1	172107536	172113980	DNM3OS	-	lncRNA	110	same	8163_ID	chr1	172113675	172113784	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
23801	ENST00000390930.1	ENST00000486776.5_3	chr20	17943352	17943589	SNORD17	-	snoRNA	chr20	17937622	18039832	OVOL2	-	processed_transcript	237	same	12381_ID	chr20	17943353	17943589	237	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
24571	ENST00000391297.1	ENST00000547088.1_3	chr12	59762831	59762932	RNU6-279P	-	snRNA	chr12	59759998	59804952	AC108721.1	-	lncRNA	101	same	11124_ID	chr12	59762832	59762932	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
26361	ENST00000405954.2_2	ENST00000418708.3_7	chr2	241499773	241504673	DUSP28	+	protein_coding	chr2	241468457	241508594	ANKMY1	-	protein_coding	5203	opposite	6861_ID	chr2	241499774	241504673	4900	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
28351	ENST00000408554.2	ENST00000421143.6_3	chr20	10036967	10037063	AL109754.1	+	miRNA	chr20	10006722	10349367	SNAP25-AS1	-	lncRNA	96	opposite	4702_ID	chr20	10036968	10037063	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
29271	ENST00000408754.1	ENST00000664857.1_3	chr3	125551271	125551371	AC092902.1	-	miRNA	chr3	125546081	125634600	LINC02614	-	lncRNA	100	same	3167_ID	chr3	125551272	125551371	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
31351	ENST00000410675.1	ENST00000297857.3_3	chr8	124275082	124275189	RNU6-628P	+	snRNA	chr8	124260690	124286727	ZHX1	-	protein_coding	107	opposite	11391_ID	chr8	124275083	124275189	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
31381	ENST00000410683.1	ENST00000567252.2_5	chr3	70300793	70300896	AC134025.1	-	miRNA	chr3	70243629	70361789	MDFIC2	-	protein_coding	103	same	4123_ID	chr3	70300794	70300896	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
31461	ENST00000410708.1	ENST00000555276.5_6	chr14	70827608	70827805	RNU2-51P	+	snRNA	chr14	70793068	70883701	COX16	-	protein_coding	197	opposite	10643_ID	chr14	70827609	70827805	197	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
31971	ENST00000411008.1	ENST00000295148.9_4	chr2	24268704	24268808	RNU6-370P	+	snRNA	chr2	24252216	24270261	WDCP	-	protein_coding	104	opposite	11187_ID	chr2	24268705	24268808	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
32631	ENST00000411381.1	ENST00000560305.5_3	chr15	40821768	40821872	RNU6-516P	+	snRNA	chr15	40820881	40857210	CCDC32	-	protein_coding	104	opposite	11302_ID	chr15	40821769	40821872	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
33571	ENST00000413274.1_1	ENST00000454230.1_4	chr2	98963457	98967603	AC092675.2	+	lncRNA	chr2	98949676	98972468	AC092675.1	-	lncRNA	4146	opposite	3120_ID	chr2	98963458	98967603	4146	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
35071	ENST00000417138.1_3	ENST00000398948.5_5	chr21	39378845	39382920	DSCR4-IT1	-	lncRNA	chr21	39323727	39493433	DSCR4	-	lncRNA	4075	same	6852_ID	chr21	39378846	39382920	4075	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
36301	ENST00000420469.2_5	ENST00000366487.4_6	chr1	247687980	247694106	GCSAML-AS1	-	processed_transcript	chr1	247687978	247699742	OR2C3	-	protein_coding	7935	same	7112_ID	chr1	247687981	247694106	6126	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	3	3
38451	ENST00000425837.1_1	ENST00000445839.5_1	chr7	11446581	11453705	AC004160.2	+	lncRNA	chr7	11292606	11559802	AC004160.1	+	lncRNA	7124	same	108_ID	chr7	11446582	11453705	7124	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
39341	ENST00000429191.1_1	ENST00000439239.2_1	chr1	24393263	24410055	MYOM3-AS1	+	lncRNA	chr1	24367324	24413289	AL591178.1	+	lncRNA	16792	same	9212_ID	chr1	24393264	24410055	16792	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
40901	ENST00000433433.1_3	ENST00000662784.1_3	chr2	105481954	105488910	LINC01159	-	lncRNA	chr2	105469921	105544168	AC018730.1	+	lncRNA	7189	opposite	7613_ID	chr2	105481955	105488910	6956	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
41181	ENST00000434431.2_1	ENST00000517716.2_2	chr2	46706703	46711564	TMEM247	+	protein_coding	chr2	46656367	46728417	AC016912.1	+	lncRNA	4861	same	12727_ID	chr2	46706704	46711564	4861	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
41751	ENST00000435872.1_3	ENST00000640226.1_2	chr1	32037185	32041174	AC114488.1	-	lncRNA	chr1	31971875	32048907	LINC01226	+	lncRNA	6314	opposite	3863_ID	chr1	32037186	32041174	3989	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
41941	ENST00000436359.1_1	ENST00000624561.1_3	chr21	44885188	44887178	AP001048.1	+	lncRNA	chr21	44881839	44898103	LINC01669	-	lncRNA	1990	opposite	6078_ID	chr21	44885189	44887178	1990	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
42251	ENST00000437102.1_3	ENST00000487368.4_1	chr3	42897496	42917390	CYP8B1	-	protein_coding	chr3	42850936	42949597	AC099329.2	+	lncRNA	19894	opposite	6762_ID	chr3	42897497	42917390	19894	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
47291	ENST00000451630.1_1	ENST00000607251.5_3	chr13	103019913	103026016	FGF14-AS1	+	lncRNA	chr13	102944676	103046869	FGF14-IT1	-	lncRNA	6128	opposite	7021_ID	chr13	103019914	103026016	6103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
48601	ENST00000455307.5_1	ENST00000437510.5_3	chr3	178136988	178175093	LINC01014	+	lncRNA	chr3	177990719	178546150	KCNMB2	+	protein_coding	38109	same	7589_ID	chr3	178136989	178175093	38105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
48761	ENST00000455642.1_4	ENST00000452481.1_3	chr20	43018263	43020177	AL117382.2	-	lncRNA	chr20	43006382	43024346	HNF4A-AS1	-	lncRNA	1914	same	4732_ID	chr20	43018264	43020177	1914	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
48951	ENST00000456146.1_1	ENST00000449106.2_4	chr3	171612225	171613030	TMEM212-IT1	+	lncRNA	chr3	171533375	171618539	TMEM212-AS1	-	lncRNA	805	opposite	12721_ID	chr3	171612226	171613030	805	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
50911	ENST00000459303.1	ENST00000546333.1_1	chr12	122346008	122346069	RNU7-170P	+	snRNA	chr12	122326714	122359376	AC069503.2	+	nonsense_mediated_decay	61	same	11740_ID	chr12	122346009	122346069	61	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
52141	ENST00000464382.2_1	ENST00000472863.5_4	chr17	46634623	46637695	HOXB-AS2	+	lncRNA	chr17	46627173	46667603	HOXB3	-	protein_coding	3072	opposite	7262_ID	chr17	46634624	46637695	3072	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
54601	ENST00000480777.2	ENST00000517716.2_2	chr2	46675364	46675650	RN7SL817P	-	misc_RNA	chr2	46656367	46728417	AC016912.1	+	lncRNA	286	opposite	10457_ID	chr2	46675365	46675650	286	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
55041	ENST00000484055.2	ENST00000301761.7_3	chr11	61211601	61211899	RN7SL23P	+	misc_RNA	chr11	61197595	61214205	SDHAF2	+	protein_coding	298	same	10046_ID	chr11	61211602	61211899	298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
55111	ENST00000484302.3_3	ENST00000467155.6_1	chr17	46673112	46682354	HOXB6	-	protein_coding	chr17	46667838	46683755	HOXB-AS3	+	lncRNA	9242	opposite	7267_ID	chr17	46673113	46682354	9242	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
56851	ENST00000496780.2	ENST00000657379.1_1	chr16	58804427	58804722	RN7SL143P	+	misc_RNA	chr16	58783570	59233299	AC106793.1	+	lncRNA	295	same	9973_ID	chr16	58804428	58804722	295	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
57121	ENST00000498652.1_3	ENST00000521197.5_1	chr7	27186984	27192217	AC004080.5	-	lncRNA	chr7	27179982	27192316	HOXA-AS3	+	lncRNA	5233	opposite	98_ID	chr7	27186985	27192217	5233	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
57361	ENST00000500267.2_1	ENST00000502471.5_4	chr5	137368462	137372955	AC113382.1	+	lncRNA	chr5	137354074	137387650	FAM13B	-	protein_coding	4493	opposite	3851_ID	chr5	137368463	137372955	4493	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
57551	ENST00000501520.1_3	ENST00000671413.3_2	chr16	28296205	28303385	AC138904.1	-	lncRNA	chr16	28270566	28332242	SBK1	+	protein_coding	7180	opposite	4196_ID	chr16	28296206	28303385	7180	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
58821	ENST00000506255.1_1	ENST00000542210.1_3	chr12	123565930	123569291	PITPNM2-AS1	+	lncRNA	chr12	123498542	123634562	PITPNM2	-	protein_coding	3361	opposite	9566_ID	chr12	123565931	123569291	3361	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
65801	ENST00000516984.1	ENST00000512730.1_1	chr5	145965661	145965763	RNA5SP196	-	rRNA	chr5	145942788	145996567	AC008728.1	+	lncRNA	102	opposite	10510_ID	chr5	145965662	145965763	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
66471	ENST00000517159.1	ENST00000621536.4_3	chr5	142029564	142029647	AC005370.1	-	miRNA	chr5	141971743	142077635	FGF1	-	protein_coding	83	same	285_ID	chr5	142029565	142029647	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
69151	ENST00000523525.1_3	ENST00000651482.1_3	chr8	127011237	127013245	AC024681.2	-	lncRNA	chr8	126957344	127305033	LINC00861	-	lncRNA	2008	same	2034_ID	chr8	127011238	127013245	2008	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
70451	ENST00000528288.5_1	ENST00000527690.1_5	chr11	93474756	93497915	C11orf54	+	protein_coding	chr11	93472446	93517557	TAF1D	-	protein_coding	23159	opposite	6469_ID	chr11	93474757	93497915	23159	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
72391	ENST00000535921.1_3	ENST00000541798.1_3	chr12	119619852	119621064	AC084880.3	-	lncRNA	chr12	119617394	119658936	HSPB8	+	protein_coding	1212	opposite	2776_ID	chr12	119619853	119621064	1212	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
73241	ENST00000541243.1_1	ENST00000393736.3_5	chr12	15304856	15308217	RERG-AS1	+	lncRNA	chr12	15273998	15501532	RERG	-	protein_coding	3361	opposite	9730_ID	chr12	15304857	15308217	3361	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
74751	ENST00000548617.1_1	ENST00000552785.1_1	chr12	54822086	54823187	LINC01154	+	lncRNA	chr12	54747575	54860769	AC079313.1	+	lncRNA	1101	same	7612_ID	chr12	54822087	54823187	1101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
74791	ENST00000548801.1_1	ENST00000472863.5_4	chr17	46656991	46659621	AC103702.1	-	lncRNA	chr17	46627173	46667603	HOXB3	-	protein_coding	2630	same	3457_ID	chr17	46656992	46659621	2630	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
75191	ENST00000550840.1_3	ENST00000257940.7_2	chr12	56512751	56513723	AC034102.7	-	lncRNA	chr12	56512049	56521298	ZC3H10	+	protein_coding	972	opposite	2247_ID	chr12	56512752	56513723	972	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
76061	ENST00000554071.1_1	ENST00000555070.1_3	chr14	90042559	90043821	FOXN3-AS2	+	lncRNA	chr14	89878655	90421003	AL137230.2	-	lncRNA	1262	opposite	7063_ID	chr14	90042560	90043821	1262	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
76291	ENST00000554769.1_3	ENST00000553811.1_1	chr14	96699767	96700438	AL355102.5	-	lncRNA	chr14	96671180	96730266	AL355102.2	+	protein_coding	671	opposite	5319_ID	chr14	96699768	96700438	671	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
76421	ENST00000555383.1_1	ENST00000553811.1_1	chr14	96677196	96681155	AL355102.1	+	lncRNA	chr14	96671180	96730266	AL355102.2	+	protein_coding	3959	same	5316_ID	chr14	96677197	96681155	3959	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
76511	ENST00000555562.1_1	ENST00000555070.1_3	chr14	89883697	89886137	FOXN3-AS1	+	lncRNA	chr14	89878655	90421003	AL137230.2	-	lncRNA	2440	opposite	7061_ID	chr14	89883698	89886137	2440	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
77451	ENST00000558255.1_1	ENST00000560484.1_3	chr15	39459939	39472127	AC113146.1	+	lncRNA	chr15	39178834	39713176	AC013652.1	-	lncRNA	12373	opposite	3837_ID	chr15	39459940	39472127	12188	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
78101	ENST00000559684.1_1	ENST00000558239.5_3	chr15	58357422	58363241	AC025431.1	+	lncRNA	chr15	58306055	58766112	ALDH1A2	-	protein_coding	5819	opposite	2087_ID	chr15	58357423	58363241	5819	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
79861	ENST00000563342.1_1	ENST00000570056.2_5	chr16	83759280	83759982	AC009063.1	-	lncRNA	chr16	83754006	83806554	AC009063.2	-	lncRNA	702	same	852_ID	chr16	83759281	83759982	702	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
80951	ENST00000565685.1_3	ENST00000563128.5_4	chr15	43476276	43477339	AC068724.1	-	lncRNA	chr15	43471990	43498679	AC068724.4	-	lncRNA	1063	same	2437_ID	chr15	43476277	43477339	1063	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
81151	ENST00000565965.1_3	ENST00000568070.1_1	chr16	90176981	90234633	AC133919.2	-	lncRNA	chr16	90172868	90244014	FAM157C	+	lncRNA	57652	opposite	4120_ID	chr16	90176982	90234633	57652	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
83031	ENST00000570293.5_8	ENST00000563634.1_6	chr16	69369178	69385632	AC026464.1	-	nonsense_mediated_decay	chr16	69368993	69390209	AC026464.3	-	protein_coding	16455	same	2153_ID	chr16	69369179	69385632	16454	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	3
83661	ENST00000573371.1_1	ENST00000573984.1_1	chr17	4067203	4068007	AC087292.1	+	lncRNA	chr17	4046995	4090605	CYB5D2	+	protein_coding	804	same	2803_ID	chr17	4067204	4068007	804	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
85161	ENST00000577581.1	ENST00000648032.1_3	chr1	162126896	162126972	MIR4654	+	miRNA	chr1	162116498	162144650	AL450163.1	-	lncRNA	76	opposite	8642_ID	chr1	162126897	162126972	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
85511	ENST00000577709.1_1	ENST00000636421.1_3	chr17	32469965	32474066	AC004147.3	+	lncRNA	chr17	32262455	32483019	AC004147.4	-	lncRNA	4101	opposite	103_ID	chr17	32469966	32474066	4101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
88301	ENST00000579424.1	ENST00000476631.5_3	chr7	151130574	151130725	MIR3907	-	miRNA	chr7	151125920	151137899	CRYGN	-	processed_transcript	151	same	8413_ID	chr7	151130575	151130725	151	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
89771	ENST00000580253.1_3	ENST00000581421.1_3	chr17	61382622	61390882	AC005828.2	-	lncRNA	chr17	61271291	61416414	AC015923.1	-	lncRNA	8260	same	363_ID	chr17	61382623	61390882	8260	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
89891	ENST00000580329.1	ENST00000636699.1_1	chr9	43802780	43803039	RN7SL343P	-	misc_RNA	chr9	43685238	43822684	CNTNAP3C	+	protein_coding	259	opposite	10116_ID	chr9	43802781	43803039	259	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
89981	ENST00000580348.1	ENST00000652378.1_3	chr4	17596690	17596959	RN7SL315P	-	misc_RNA	chr4	17587889	17616208	AC006160.1	-	lncRNA	269	same	10100_ID	chr4	17596691	17596959	269	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
90601	ENST00000580658.1_3	ENST00000636421.1_3	chr17	32407900	32409243	AC004147.1	-	lncRNA	chr17	32262455	32483019	AC004147.4	-	lncRNA	1343	same	100_ID	chr17	32407901	32409243	1343	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
92361	ENST00000581727.1_1	ENST00000636421.1_3	chr17	32445365	32445901	AC004147.5	-	lncRNA	chr17	32262455	32483019	AC004147.4	-	lncRNA	536	same	105_ID	chr17	32445366	32445901	536	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
92931	ENST00000581970.1	ENST00000648941.1_1	chr16	26036557	26036631	MIR548W	+	miRNA	chr16	25799307	26053668	AC093516.1	+	lncRNA	74	same	8919_ID	chr16	26036558	26036631	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
93571	ENST00000582307.1_1	ENST00000581836.1_1	chr18	28711418	28712457	AC012417.1	+	lncRNA	chr18	28681550	28742752	DSCAS	+	lncRNA	1039	same	1381_ID	chr18	28711419	28712457	1039	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
94501	ENST00000582827.1	ENST00000381077.10_5	chrX	7065900	7065978	MIR4767	+	miRNA	chrX	6966960	7066194	PUDP	-	protein_coding	78	opposite	8754_ID	chrX	7065901	7065978	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
94841	ENST00000583008.1	ENST00000264952.2_1	chr3	141506752	141506851	AC112504.1	+	miRNA	chr3	141496989	141537332	GRK7	+	protein_coding	99	same	3827_ID	chr3	141506753	141506851	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
97801	ENST00000584697.1	ENST00000398948.5_5	chr21	39334967	39335068	AP001427.1	+	miRNA	chr21	39323727	39493433	DSCR4	-	lncRNA	101	opposite	6130_ID	chr21	39334968	39335068	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
98881	ENST00000585256.1	ENST00000542210.1_3	chr12	123500726	123500976	RN7SL133P	+	misc_RNA	chr12	123498542	123634562	PITPNM2	-	protein_coding	250	opposite	9969_ID	chr12	123500727	123500976	250	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
99081	ENST00000585495.1_1	ENST00000585765.1_3	chr17	59460761	59462041	AC005746.1	+	lncRNA	chr17	59439028	59477604	AC005746.2	-	lncRNA	1896	opposite	351_ID	chr17	59460762	59462041	1280	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
99951	ENST00000587898.1_1	ENST00000580518.1_3	chr17	27054275	27054757	AC010761.6	+	lncRNA	chr17	27051616	27054953	TLCD1	-	protein_coding	482	opposite	1143_ID	chr17	27054276	27054757	482	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
100561	ENST00000590241.1_1	ENST00000589145.1_3	chr17	74546032	74546908	AC015802.3	+	lncRNA	chr17	74524615	74547257	CYGB	-	protein_coding	876	opposite	1478_ID	chr17	74546033	74546908	876	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
100651	ENST00000590441.1_1	ENST00000418389.6_3	chr19	5899920	5901522	AC024592.1	+	lncRNA	chr19	5891286	5903797	NDUFA11	-	protein_coding	1617	opposite	2022_ID	chr19	5899921	5901522	1602	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
101411	ENST00000592931.1_1	ENST00000593065.5_4	chr19	29000144	29009635	AC005616.1	+	lncRNA	chr19	28927966	29026184	AC005381.1	-	lncRNA	9491	opposite	323_ID	chr19	29000145	29009635	9491	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
102061	ENST00000595468.1	ENST00000439593.1_6	chr21	34947430	34947645	AP000304.1	-	protein_coding	chr21	34931847	34950669	DONSON	-	nonsense_mediated_decay	215	same	5972_ID	chr21	34947431	34947645	215	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
102081	ENST00000595500.1_3	ENST00000600067.1_3	chr19	51864965	51868798	AC008750.4	-	lncRNA	chr19	51853626	51871353	AC008750.7	-	nonsense_mediated_decay	3833	same	800_ID	chr19	51864966	51868798	3833	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
103041	ENST00000598070.1_3	ENST00000599761.5_3	chr19	4654975	4655536	AC005339.1	-	lncRNA	chr19	4641385	4664918	MYDGF	-	protein_coding	561	same	280_ID	chr19	4654976	4655536	561	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
103581	ENST00000599640.1	ENST00000606982.1	chr1	147631966	147632428	BX842679.1	-	protein_coding	chr1	147608219	147634886	NBPF24	-	processed_transcript	462	same	6461_ID	chr1	147631967	147632428	462	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
103661	ENST00000599952.1_1	ENST00000311044.8_4	chr19	58869364	58870969	AC012313.2	+	lncRNA	chr19	58865722	58874117	ZNF497	-	protein_coding	1605	opposite	1359_ID	chr19	58869365	58870969	1605	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
103931	ENST00000600936.1_1	ENST00000557408.5_4	chr14	77607025	77609339	AC007375.3	+	lncRNA	chr14	77582910	77685227	TMEM63C	+	protein_coding	2314	same	554_ID	chr14	77607026	77609339	2314	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
104131	ENST00000601420.1_3	ENST00000339282.12_4	chr19	12640581	12643787	AC010422.4	-	lncRNA	chr19	12636186	12662296	ZNF564	-	protein_coding	3206	same	1074_ID	chr19	12640582	12643787	3206	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
104451	ENST00000602322.1_1	ENST00000602381.2_4	chr11	82896562	82898078	PCF11-AS1	-	lncRNA	chr11	82895532	82904684	AP000873.2	-	lncRNA	1516	same	9512_ID	chr11	82896563	82898078	1516	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
105841	ENST00000604000.4_3	ENST00000625258.1_4	chr1	145477068	145501670	LIX1L	+	protein_coding	chr1	145457275	145507835	AC243547.3	-	protein_coding	24602	opposite	7827_ID	chr1	145477069	145501670	24602	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
106581	ENST00000605902.1_3	ENST00000426997.5_4	chr2	61378567	61389231	AC016747.2	-	lncRNA	chr2	61372202	61391943	C2orf74	+	protein_coding	10673	opposite	1562_ID	chr2	61378568	61389231	10664	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
106951	ENST00000606234.1	ENST00000394767.3_4	chr4	105412032	105412111	AC093628.1	+	miRNA	chr4	105389464	105416051	CXXC4	-	protein_coding	79	opposite	3231_ID	chr4	105412033	105412111	79	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	3
109261	ENST00000608410.1_1	ENST00000357401.3_1	chr21	27832221	27832533	AP001596.2	-	lncRNA	chr21	27778261	27941571	CYYR1-AS1	+	lncRNA	312	opposite	6148_ID	chr21	27832222	27832533	312	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
110001	ENST00000609363.1_3	ENST00000418273.2_3	chr10	88729993	88730583	AL136982.7	-	lncRNA	chr10	88725496	88731068	ADIRF-AS1	-	lncRNA	590	same	4927_ID	chr10	88729994	88730583	590	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	3
110221	ENST00000609553.1_1	ENST00000661609.1_3	chr3	136556179	136557863	AC096992.2	-	lncRNA	chr3	136554186	136580873	NCK1-DT	-	lncRNA	1684	same	3301_ID	chr3	136556180	136557863	1684	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
110541	ENST00000609910.1_1	ENST00000504298.1_1	chr21	30731322	30731774	AP000240.1	+	lncRNA	chr21	30723954	30734215	BACH1-IT1	+	lncRNA	452	same	5964_ID	chr21	30731323	30731774	452	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
110641	ENST00000609969.1_1	ENST00000595232.2_6	chr3	107048276	107048809	AC063944.2	+	lncRNA	chr3	106991513	107140151	AC063944.1	-	lncRNA	533	opposite	2352_ID	chr3	107048277	107048809	533	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
110961	ENST00000610260.1_1	ENST00000609092.5_4	chr4	44695962	44696403	AC096586.2	-	lncRNA	chr4	44684224	44713040	GNPDA2	-	protein_coding	441	same	3282_ID	chr4	44695963	44696403	441	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
111301	ENST00000610970.1_3	ENST00000521159.5_1	chr7	27168125	27170399	HOXA4	-	protein_coding	chr7	27162166	27173921	HOXA-AS2	+	lncRNA	2274	opposite	7254_ID	chr7	27168126	27170399	2274	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
112191	ENST00000613256.1_1	ENST00000564893.1_3	chr16	27698502	27698843	AC016597.2	+	lncRNA	chr16	27690260	27730104	AC016597.1	-	lncRNA	341	opposite	1544_ID	chr16	27698503	27698843	341	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11247	ENST00000613900.1_1	ENST00000532830.5_3	chr11	67121099	67121819	AP003419.2	+	lncRNA	chr11	67119018	67124443	POLD4	-	protein_coding	720	opposite	6255_ID	chr11	67121100	67121819	720	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
115661	ENST00000621404.1_1	ENST00000540392.1_3	chr12	26426261	26426833	AC022509.4	-	lncRNA	chr12	26364096	26488789	AC022509.2	-	lncRNA	572	same	1877_ID	chr12	26426262	26426833	572	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
117771	ENST00000628989.1_3	ENST00000648995.1_1	chr10	6816268	6821142	LINC00706	-	lncRNA	chr10	6779379	6882674	AL392086.2	+	lncRNA	4874	opposite	7573_ID	chr10	6816269	6821142	4874	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
117801	ENST00000629214.1_2	ENST00000420724.1_3	chr2	65850405	65855558	AC007389.3	+	lncRNA	chr2	65816699	65867311	AC007389.2	-	lncRNA	5153	opposite	562_ID	chr2	65850406	65855558	5153	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
118841	ENST00000637427.1_3	ENST00000530450.1_3	chr11	43877462	43877954	AC087521.4	-	lncRNA	chr11	43854721	43902276	AC087521.2	-	lncRNA	492	same	2831_ID	chr11	43877463	43877954	492	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
120571	ENST00000648196.1_3	ENST00000559531.1_3	chr15	91173766	91174987	AC103739.3	-	lncRNA	chr15	91163238	91260372	CRTC3-AS1	-	lncRNA	1221	same	3465_ID	chr15	91173767	91174987	1221	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
121601	ENST00000649912.1_2	ENST00000609375.1_5	chr20	10401193	10401385	AL034430.2	-	protein_coding	chr20	10394167	10412570	AL034430.1	-	protein_coding	192	same	4588_ID	chr20	10401194	10401385	192	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	2	3
122351	ENST00000651374.1_3	ENST00000598758.5_5	chr19	41813301	41816317	AC011462.5	-	lncRNA	chr19	41807491	41847935	TGFB1	-	processed_transcript	3016	same	1224_ID	chr19	41813302	41816317	3016	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
123431	ENST00000653830.1_3	ENST00000573622.1_1	chr12	9799609	9800679	AC010186.1	-	lncRNA	chr12	9795467	9809666	AC010186.4	+	lncRNA	1071	opposite	1032_ID	chr12	9799610	9800679	1070	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
124201	ENST00000655674.1_3	ENST00000479961.1_6	chr15	80186843	80189037	AC015871.6	-	lncRNA	chr15	80137536	80216086	ST20-MTHFS	-	protein_coding	2194	same	1492_ID	chr15	80186844	80189037	2194	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
125131	ENST00000657583.1_1	ENST00000560484.1_3	chr15	39311393	39318722	AC087878.1	+	lncRNA	chr15	39178834	39713176	AC013652.1	-	lncRNA	7329	opposite	2855_ID	chr15	39311394	39318722	7329	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
125201	ENST00000657687.1_4	ENST00000556347.1_1	chr14	62002110	62012202	AL355916.2	-	lncRNA	chr14	61995845	62124682	AL355916.3	+	protein_coding	10100	opposite	5360_ID	chr14	62002111	62012202	10092	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
127081	ENST00000661303.1_3	ENST00000555185.5_1	chr14	61761626	61789556	AL359220.1	-	lncRNA	chr14	61654276	61997302	PRKCH	+	protein_coding	27930	opposite	5478_ID	chr14	61761627	61789556	27930	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
127611	ENST00000662590.1_3	ENST00000657379.1_1	chr16	58881618	58914255	AC092378.1	-	lncRNA	chr16	58783570	59233299	AC106793.1	+	lncRNA	32637	opposite	3086_ID	chr16	58881619	58914255	32637	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
130371	ENST00000668498.1_3	ENST00000657632.1_1	chr2	173187987	173195310	AC104088.2	-	lncRNA	chr2	173165872	173232669	AC104088.1	+	lncRNA	7323	opposite	3507_ID	chr2	173187988	173195310	7323	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
130581	ENST00000668950.1_3	ENST00000607540.1_1	chr2	56400683	56413005	AC007743.1	-	lncRNA	chr2	56374764	56613306	AC007744.1	+	lncRNA	12337	opposite	647_ID	chr2	56400684	56413005	12322	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
130611	ENST00000669009.1_1	ENST00000662804.1_3	chr2	171623387	171635235	AC007405.3	+	lncRNA	chr2	171579373	171670180	AC007405.1	-	lncRNA	11852	opposite	569_ID	chr2	171623388	171635235	11848	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
23310	ENST00000281031.5_6	ENST00000530054.1_5	chr11	77779342	77790908	NDUFC2	-	protein_coding	chr11	77728091	77790911	NDUFC2-KCTD14	-	protein_coding	11566	same	9247_ID	chr11	77779343	77790908	11566	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
31710	ENST00000300778.4_4	ENST00000292896.3_4	chr11	5443340	5444436	OR51Q1	+	protein_coding	chr11	5289574	5526882	HBE1	-	protein_coding	1096	opposite	9432_ID	chr11	5443341	5444436	1096	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
48310	ENST00000322641.5_2	ENST00000292896.3_4	chr11	5509914	5510979	OR52D1	+	protein_coding	chr11	5289574	5526882	HBE1	-	protein_coding	1065	opposite	9441_ID	chr11	5509915	5510979	1065	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
15951	ENST00000380211.1_2	ENST00000292896.3_4	chr11	5461799	5462744	OR51I1	-	protein_coding	chr11	5289574	5526882	HBE1	-	protein_coding	945	same	9421_ID	chr11	5461800	5462744	945	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
15991	ENST00000380219.1_2	ENST00000292896.3_4	chr11	5372737	5373676	OR51B6	+	protein_coding	chr11	5289574	5526882	HBE1	-	protein_coding	939	opposite	9412_ID	chr11	5372738	5373676	939	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
16031	ENST00000380224.2_4	ENST00000292896.3_4	chr11	5322243	5323176	OR51B4	-	protein_coding	chr11	5289574	5526882	HBE1	-	protein_coding	933	same	9405_ID	chr11	5322244	5323176	933	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
29061	ENST00000408726.1	ENST00000606382.1_3	chr2	59468755	59468837	AC007131.3	-	miRNA	chr2	59445814	60327335	AC007100.1	-	lncRNA	82	same	514_ID	chr2	59468756	59468837	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
63731	ENST00000516392.1	ENST00000437753.1_3	chr1	44182137	44182227	RNU6-1058P	+	snRNA	chr1	44175062	44193014	ST3GAL3-AS1	-	lncRNA	90	opposite	10803_ID	chr1	44182138	44182227	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
73161	ENST00000540625.5_3	ENST00000540392.1_3	chr12	26383751	26472653	AC022509.1	-	lncRNA	chr12	26364096	26488789	AC022509.2	-	lncRNA	90173	same	1874_ID	chr12	26383752	26472653	88902	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
79862	ENST00000563364.3_2	ENST00000570293.5_8	chr16	69371898	69376994	NIP7	+	retained_intron	chr16	69369178	69385632	AC026464.1	-	nonsense_mediated_decay	5111	opposite	9263_ID	chr16	69371899	69376994	5096	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
82411	ENST00000568560.1_1	ENST00000561527.5_3	chr16	66543339	66543951	AC010542.2	+	lncRNA	chr16	66503714	66551215	AC010542.3	-	retained_intron	612	opposite	1102_ID	chr16	66543340	66543951	612	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
89021	ENST00000579822.1	ENST00000578831.1_3	chr18	20513311	20513401	MIR4741	+	miRNA	chr18	20279443	20513727	AC090912.1	-	lncRNA	90	opposite	8728_ID	chr18	20513312	20513401	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
94911	ENST00000583086.1_3	ENST00000578831.1_3	chr18	20364327	20487684	AC090912.2	-	lncRNA	chr18	20279443	20513727	AC090912.1	-	lncRNA	184231	same	2946_ID	chr18	20364328	20487684	123357	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
104101	ENST00000601420.1_3	ENST00000593682.1_3	chr19	12640581	12643787	AC010422.4	-	lncRNA	chr19	12636533	12691789	AC010422.6	-	nonsense_mediated_decay	3206	same	1075_ID	chr19	12640582	12643787	3206	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
110381	ENST00000609775.1_1	ENST00000578831.1_3	chr18	20462787	20463320	AC090912.3	-	lncRNA	chr18	20279443	20513727	AC090912.1	-	lncRNA	533	same	2947_ID	chr18	20462788	20463320	533	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
112431	ENST00000613900.1_1	ENST00000543494.1_3	chr11	67121099	67121819	AP003419.2	+	lncRNA	chr11	67119042	67141055	AP003419.1	-	protein_coding	720	opposite	6257_ID	chr11	67121100	67121819	720	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
116871	ENST00000624187.1_3	ENST00000292896.3_4	chr11	5344588	5345527	OR51B2	-	protein_coding	chr11	5289574	5526882	HBE1	-	protein_coding	939	same	9403_ID	chr11	5344589	5345527	939	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
119411	ENST00000641529.1_1	ENST00000292896.3_4	chr11	5405041	5414493	OR51M1	+	processed_transcript	chr11	5289574	5526882	HBE1	-	protein_coding	9452	opposite	9426_ID	chr11	5405042	5414493	9452	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
119651	ENST00000641930.1_2	ENST00000292896.3_4	chr11	5470552	5477748	OR51I2	+	protein_coding	chr11	5289574	5526882	HBE1	-	protein_coding	7196	opposite	9423_ID	chr11	5470553	5477748	7196	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
52611	ENST00000467897.2_3	ENST00000518451.1_3	chr7	27168587	27192180	AC004080.6	-	lncRNA	chr7	27166546	27192200	HOXA3	-	processed_transcript	23593	same	99_ID	chr7	27168588	27192180	23593	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
93121	ENST00000582134.1	ENST00000341653.6_3	chr14	65511405	65511487	MIR4706	+	miRNA	chr14	65472891	65569105	MAX	-	protein_coding	82	opposite	8692_ID	chr14	65511406	65511487	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
110361	ENST00000609775.1_1	ENST00000583086.1_3	chr18	20462787	20463320	AC090912.3	-	lncRNA	chr18	20364327	20487684	AC090912.2	-	lncRNA	533	same	2948_ID	chr18	20462788	20463320	533	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12	ENST00000181383.10_5	ENST00000663159.1_1	chr13	46627320	46679168	CPB2	-	protein_coding	chr13	46626631	46735514	CPB2-AS1	+	lncRNA	51848	opposite	6698_ID	chr13	46627321	46679168	51848	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
20	ENST00000216455.9_2	ENST00000554218.1_3	chr14	58711560	58738722	PSMA3	+	protein_coding	chr14	58605818	58764857	ARMH4	-	processed_transcript	27170	opposite	9667_ID	chr14	58711561	58738722	27162	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
36	ENST00000222726.4_4	ENST00000518848.5_1	chr7	27180670	27183300	HOXA5	-	protein_coding	chr7	27169595	27192195	HOXA-AS3	+	lncRNA	2630	opposite	7256_ID	chr7	27180671	27183300	2630	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
45	ENST00000228887.5_4	ENST00000542078.2_2	chr12	13093708	13103318	GPRC5D	-	protein_coding	chr12	13080667	13137015	GPRC5D-AS1	+	lncRNA	11373	opposite	7173_ID	chr12	13093709	13103318	9610	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
46	ENST00000228928.12_2	ENST00000552784.1_3	chr12	113376278	113411056	OAS3	+	protein_coding	chr12	113345432	113455556	AC004551.1	-	lncRNA	34808	opposite	9322_ID	chr12	113376279	113411056	34778	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
57	ENST00000232003.5_2	ENST00000630178.2_5	chr3	186383802	186396023	HRG	+	protein_coding	chr3	186297264	186461626	AC068631.1	-	lncRNA	18019	opposite	7287_ID	chr3	186383803	186396023	12221	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
60	ENST00000233143.6_2	ENST00000474298.5_3	chr2	85132779	85133795	TMSB10	+	protein_coding	chr2	85097712	85134132	TRABD2A	-	processed_transcript	1016	opposite	12747_ID	chr2	85132780	85133795	1016	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
75	ENST00000239451.7_3	ENST00000624699.1_3	chr5	140682201	140683616	SLC25A2	-	protein_coding	chr5	140639792	140700212	TAF7	-	processed_transcript	1415	same	12082_ID	chr5	140682202	140683616	1415	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
80	ENST00000241808.9_5	ENST00000649869.1_1	chr16	11369495	11370337	PRM2	-	protein_coding	chr16	11343483	11475519	RMI2	+	processed_transcript	842	opposite	9643_ID	chr16	11369496	11370337	842	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
87	ENST00000244289.9_4	ENST00000594624.6_1	chr19	42905665	42931540	LIPE	-	protein_coding	chr19	42901325	43156507	LIPE-AS1	+	lncRNA	25875	opposite	7822_ID	chr19	42905666	42931540	25875	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
88	ENST00000244336.10_5	ENST00000594624.6_1	chr19	43084394	43099076	CEACAM8	-	protein_coding	chr19	42901325	43156507	LIPE-AS1	+	lncRNA	14813	opposite	6614_ID	chr19	43084395	43099076	14682	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
91	ENST00000244820.2_3	ENST00000662924.1_3	chr2	237957241	237964810	AC105760.1	-	lncRNA	chr2	237819439	237994411	AC012063.1	-	lncRNA	7569	same	3622_ID	chr2	237957242	237964810	7569	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
92	ENST00000244926.4_2	ENST00000529875.1_3	chr11	62009710	62012284	SCGB1D2	+	protein_coding	chr11	61980898	62028021	AP003306.1	-	lncRNA	2574	opposite	12007_ID	chr11	62009711	62012284	2574	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
107	ENST00000249842.8_3	ENST00000561647.1_3	chr15	74466050	74469212	ISLR	+	protein_coding	chr15	74445140	74471567	AC010931.2	-	lncRNA	3163	opposite	7370_ID	chr15	74466051	74469212	3162	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
111	ENST00000250378.7_4	ENST00000555109.1_2	chr14	24974558	24977471	CMA1	-	protein_coding	chr14	24970799	24977894	AL132800.1	+	lncRNA	2913	opposite	6673_ID	chr14	24974559	24977471	2913	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
125	ENST00000254286.9_2	ENST00000554218.1_3	chr14	58666866	58702354	ACTR10	+	protein_coding	chr14	58605818	58764857	ARMH4	-	processed_transcript	35557	opposite	4343_ID	chr14	58666867	58702354	35488	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
140	ENST00000256644.8_5	ENST00000626572.2_3	chr1	110943874	110950564	LAMTOR5	-	protein_coding	chr1	110889737	110960984	LAMTOR5-AS1	+	lncRNA	6694	opposite	7507_ID	chr1	110943875	110950564	6690	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
158	ENST00000260950.5_4	ENST00000495546.1_1	chr2	190920425	190927455	MSTN	-	protein_coding	chr2	190744352	191028777	C2orf88	+	processed_transcript	7030	opposite	9179_ID	chr2	190920426	190927455	7030	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
181	ENST00000266579.9_4	ENST00000667191.1_1	chr12	47158543	47219780	SLC38A4	-	protein_coding	chr12	46777434	47270567	AC008014.1	+	lncRNA	67648	opposite	12095_ID	chr12	47158544	47219780	61237	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
186	ENST00000267017.3_3	ENST00000448979.3_3	chr12	53900473	53901422	NPFF	-	protein_coding	chr12	53900471	53902004	ATF7-NPFF	-	retained_intron	949	same	9287_ID	chr12	53900474	53901422	949	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	1	2
200	ENST00000273308.9_5	ENST00000660360.1_1	chr12	56703627	56709772	CNPY2	-	protein_coding	chr12	56693896	56711776	AC073896.2	+	lncRNA	6278	opposite	6678_ID	chr12	56703628	56709772	6145	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
208	ENST00000275461.3_2	ENST00000452700.1_1	chr7	19184404	19185044	FERD3L	-	protein_coding	chr7	19183915	19185876	AC003986.1	+	lncRNA	640	opposite	7013_ID	chr7	19184405	19185044	640	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
209	ENST00000275767.3_2	ENST00000459937.5_3	chr7	134832823	134850967	TMEM140	+	protein_coding	chr7	134777114	134855447	CYREN	-	processed_transcript	18144	opposite	12717_ID	chr7	134832824	134850967	18144	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
216	ENST00000277309.3_2	ENST00000436632.5_3	chr9	125562401	125563352	OR1K1	+	protein_coding	chr9	125560667	125588965	PDCL	-	protein_coding	951	opposite	9367_ID	chr9	125562402	125563352	951	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
247	ENST00000287202.10_5	ENST00000570175.1_1	chr15	72577067	72612498	CELF6	-	protein_coding	chr15	72571207	72644135	AC009690.2	+	lncRNA	35431	opposite	6618_ID	chr15	72577068	72612498	35431	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
252	ENST00000288025.4_4	ENST00000563634.1_6	chr16	69377152	69385689	TMED6	-	protein_coding	chr16	69368993	69390209	AC026464.3	-	protein_coding	8537	same	12710_ID	chr16	69377153	69385689	8537	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
262	ENST00000290354.6_2	ENST00000624080.1_7	chr21	37507376	37518860	CBR3	+	protein_coding	chr21	37505097	37548113	CBR3-AS1	-	lncRNA	11484	opposite	6560_ID	chr21	37507377	37518860	11484	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
269	ENST00000292330.3_4	ENST00000492523.1_1	chr7	100032904	100034120	PPP1R35	-	protein_coding	chr7	100032879	100034133	AC092849.1	+	lncRNA	1216	opposite	9615_ID	chr7	100032905	100034120	1216	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
300	ENST00000297205.7_2	ENST00000478318.6_3	chr7	89783782	89794141	STEAP1	+	protein_coding	chr7	89511666	89840949	STEAP2-AS1	-	lncRNA	10374	opposite	12566_ID	chr7	89783783	89794141	10359	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
303	ENST00000297439.4_4	ENST00000531701.1_2	chr8	6728113	6735458	DEFB1	-	protein_coding	chr8	6699432	6742798	GS1-24F4.2	+	lncRNA	7345	opposite	6786_ID	chr8	6728114	6735458	7345	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
315	ENST00000300408.8_3	ENST00000576461.1_1	chr17	47481413	47492244	PHB	-	protein_coding	chr17	47448101	47554350	AC091180.5	+	lncRNA	10850	opposite	9548_ID	chr17	47481414	47492244	10831	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
318	ENST00000300778.4_4	ENST00000380252.6_4	chr11	5443340	5444436	OR51Q1	+	protein_coding	chr11	5274419	5526835	HBG2	-	protein_coding	1096	opposite	9430_ID	chr11	5443341	5444436	1096	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
329	ENST00000301825.8_2	ENST00000439293.5_3	chr3	40428674	40470235	ENTPD3	+	protein_coding	chr3	40355292	40494677	ENTPD3-AS1	-	lncRNA	41561	opposite	6910_ID	chr3	40428675	40470235	41561	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
334	ENST00000302622.3_2	ENST00000335397.3_2	chr11	57798401	57799403	OR6Q1	+	protein_coding	chr11	57791352	57949088	OR9Q1	+	protein_coding	1002	same	9472_ID	chr11	57798402	57799403	1002	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
351	ENST00000304519.10_3	ENST00000329335.3_3	chr8	10530137	10558100	C8orf74	+	protein_coding	chr8	10478605	10569697	RP1L1	-	processed_transcript	27963	opposite	6524_ID	chr8	10530138	10558100	27963	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
371	ENST00000307658.12_3	ENST00000597410.1_1	chr19	57922528	57933302	ZNF17	+	protein_coding	chr19	57905550	57949825	AC003002.2	+	protein_coding	10774	same	13023_ID	chr19	57922529	57933302	10774	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
387	ENST00000310331.3_2	ENST00000602657.1_7	chr5	139927246	139929161	EIF4EBP3	+	protein_coding	chr5	139916924	139930713	SRA1	-	protein_coding	1915	opposite	6889_ID	chr5	139927247	139929161	1915	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
392	ENST00000310799.9_4	ENST00000529694.6_2	chr11	128769459	128775592	C11orf45	-	protein_coding	chr11	128761250	128791058	KCNJ5	+	protein_coding	6471	opposite	6468_ID	chr11	128769460	128775592	6133	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
405	ENST00000312293.9_2	ENST00000378140.3_3	chr11	71900601	71907367	FOLR1	+	protein_coding	chr11	71874365	71920285	AP000812.1	-	lncRNA	6766	opposite	7056_ID	chr11	71900602	71907367	6766	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
413	ENST00000312511.4_4	ENST00000649869.1_1	chr16	11374697	11375187	PRM1	-	protein_coding	chr16	11343483	11475519	RMI2	+	processed_transcript	490	opposite	9642_ID	chr16	11374698	11375187	490	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
423	ENST00000314251.8_4	ENST00000655926.1_1	chr3	170714135	170744509	SLC2A2	-	protein_coding	chr3	170626645	170772762	AC061708.1	+	lncRNA	30397	opposite	12086_ID	chr3	170714136	170744509	30374	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
426	ENST00000314392.13_3	ENST00000592240.5_1	chr9	130697377	130700133	DPM2	-	protein_coding	chr9	130696781	130703134	AL157935.1	+	lncRNA	2756	opposite	6839_ID	chr9	130697378	130700133	2756	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
428	ENST00000314890.3_3	ENST00000503152.2_4	chr5	43039334	43043272	ANXA2R	-	protein_coding	chr5	43014832	43067554	AC025171.1	-	lncRNA	4090	same	5959_ID	chr5	43039335	43043272	3938	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
435	ENST00000316793.7_3	ENST00000472766.1_1	chr3	8792093	8811303	OXTR	-	protein_coding	chr3	8775521	8883492	CAV3	+	processed_transcript	19221	opposite	9487_ID	chr3	8792094	8811303	19210	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
443	ENST00000317398.10_5	ENST00000594684.1_1	chr19	58231118	58238992	ZNF671	-	protein_coding	chr19	58193412	58264943	AC003006.1	+	protein_coding	7874	opposite	13065_ID	chr19	58231119	58238992	7874	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
461	ENST00000320002.3_2	ENST00000435333.5_3	chr1	247768887	247769817	OR2G3	+	protein_coding	chr1	247728940	247804156	AL606804.1	-	lncRNA	930	opposite	9386_ID	chr1	247768888	247769817	930	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
462	ENST00000320065.1_2	ENST00000435333.5_3	chr1	247751661	247752615	OR2G2	+	protein_coding	chr1	247728940	247804156	AL606804.1	-	lncRNA	954	opposite	9385_ID	chr1	247751662	247752615	954	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
463	ENST00000320078.12_5	ENST00000635495.1_1	chr19	43511807	43530621	PSG11	-	protein_coding	chr19	43481614	43675667	AC004784.1	+	lncRNA	18819	opposite	9662_ID	chr19	43511808	43530621	18814	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
472	ENST00000321685.7_2	ENST00000534988.1_3	chr11	63997749	64001753	DNAJC4	+	protein_coding	chr11	63996685	64001764	AP001453.1	-	lncRNA	4009	opposite	6827_ID	chr11	63997750	64001753	4004	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
484	ENST00000322641.5_2	ENST00000380252.6_4	chr11	5509914	5510979	OR52D1	+	protein_coding	chr11	5274419	5526835	HBG2	-	protein_coding	1065	opposite	9440_ID	chr11	5509915	5510979	1065	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
511	ENST00000325995.7_3	ENST00000652905.1_1	chr8	124657766	124665190	KLHL38	-	protein_coding	chr8	124626458	124679488	AC135166.1	+	lncRNA	7424	opposite	7454_ID	chr8	124657767	124665190	7424	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
522	ENST00000327157.4_3	ENST00000649869.1_1	chr16	11367055	11367486	PRM3	-	protein_coding	chr16	11343483	11475519	RMI2	+	processed_transcript	431	opposite	9644_ID	chr16	11367056	11367486	431	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
525	ENST00000327536.5_4	ENST00000559909.1_1	chr15	51348794	51397473	TNFAIP8L3	-	protein_coding	chr15	51329684	51586109	MIR4713HG	+	lncRNA	48679	opposite	12750_ID	chr15	51348795	51397473	48679	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
528	ENST00000327741.9_5	ENST00000553310.6_3	chr12	52679696	52685318	KRT81	-	protein_coding	chr12	52643083	52696943	KRT86	+	protein_coding	5622	opposite	7473_ID	chr12	52679697	52685318	5622	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
554	ENST00000330949.3_3	ENST00000658904.1_1	chr13	112721462	112726020	SOX1	+	protein_coding	chr13	112711329	112762325	SOX1-OT	+	lncRNA	4558	same	12490_ID	chr13	112721463	112726020	4558	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
558	ENST00000332029.3_3	ENST00000649869.1_1	chr16	11348264	11350061	SOCS1	-	protein_coding	chr16	11343483	11475519	RMI2	+	processed_transcript	1797	opposite	12485_ID	chr16	11348265	11350061	1797	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
576	ENST00000333449.9_2	ENST00000528367.1_4	chr11	62554873	62557872	TMEM179B	+	protein_coding	chr11	62539132	62559464	TMEM223	-	protein_coding	2999	opposite	12719_ID	chr11	62554874	62557872	2999	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	1	2
589	ENST00000334708.4_4	ENST00000536735.1_1	chr14	94908800	94919137	SERPINA11	-	protein_coding	chr14	94896969	94931067	AL132708.1	+	lncRNA	10337	opposite	12038_ID	chr14	94908801	94919137	10337	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
627	ENST00000340210.1	ENST00000567180.3_2	chr8	145321516	145323045	SCXB	+	protein_coding	chr8	145321355	145323384	SCX	+	protein_coding	1529	same	12021_ID	chr8	145321517	145323045	1529	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
643	ENST00000342315.8_2	ENST00000552784.1_3	chr12	113416199	113449528	OAS2	+	protein_coding	chr12	113345432	113455556	AC004551.1	-	lncRNA	33329	opposite	9321_ID	chr12	113416200	113449528	33329	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
664	ENST00000347262.8_3	ENST00000590510.5_3	chr19	38741876	38747172	PPP1R14A	-	protein_coding	chr19	38734674	38778545	SPINT2	+	protein_coding	5296	opposite	9613_ID	chr19	38741877	38747172	5296	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
667	ENST00000347644.8_2	ENST00000663463.1_3	chr15	45544431	45570044	SLC28A2	+	protein_coding	chr15	45528127	45571449	AC051619.4	-	lncRNA	25613	opposite	12085_ID	chr15	45544432	45570044	25613	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
682	ENST00000354611.9_4	ENST00000491721.1_1	chr2	200793635	200820214	TYW5	-	protein_coding	chr2	200776028	200820658	C2orf69	+	processed_transcript	26824	opposite	12827_ID	chr2	200793636	200820214	26579	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
714	ENST00000358777.9_2	ENST00000662585.1_3	chr19	45174723	45187627	CEACAM19	+	protein_coding	chr19	45134873	45228481	AC243964.3	-	lncRNA	22087	opposite	6613_ID	chr19	45174724	45187627	12904	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
716	ENST00000359342.7_3	ENST00000591656.1_8	chr19	49535146	49536495	CGB2	+	protein_coding	chr19	49526209	49540152	AC008687.1	-	protein_coding	1349	opposite	6633_ID	chr19	49535147	49536495	1349	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
744	ENST00000362002.3_4	ENST00000671386.1_1	chrX	63444073	63450487	ASB12	-	protein_coding	chrX	63425853	63453735	AL356317.1	+	lncRNA	6414	opposite	6351_ID	chrX	63444074	63450487	6414	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
746	ENST00000362102.1	ENST00000602324.1_3	chr19	52196038	52196117	MIRLET7E	+	miRNA	chr19	52188615	52196709	SPACA6P-AS	-	lncRNA	79	opposite	9134_ID	chr19	52196039	52196117	79	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
762	ENST00000362150.1	ENST00000553692.1_1	chr14	101512256	101512331	MIR381	+	miRNA	chr14	101511493	101518132	MIR381HG	+	lncRNA	75	same	8410_ID	chr14	101512257	101512331	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
765	ENST00000362159.2	ENST00000553692.1_1	chr14	101515886	101515983	MIR655	+	miRNA	chr14	101511493	101518132	MIR381HG	+	lncRNA	97	same	9060_ID	chr14	101515887	101515983	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
767	ENST00000362161.1	ENST00000595160.1_3	chr19	54290928	54290995	MIR371A	+	miRNA	chr19	54290850	54291423	AC008753.3	-	lncRNA	67	opposite	8397_ID	chr19	54290929	54290995	67	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
776	ENST00000362189.1	ENST00000495594.2_3	chr1	205417429	205417526	MIR135B	-	miRNA	chr1	205350505	205425082	LEMD1	-	protein_coding	97	same	8089_ID	chr1	205417430	205417526	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
787	ENST00000362210.1	ENST00000418518.2_3	chr6	52013720	52013839	MIR133B	+	miRNA	chr6	52011611	52015917	LINCMD1	-	lncRNA	119	opposite	8084_ID	chr6	52013721	52013839	119	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
793	ENST00000362225.1	ENST00000595160.1_3	chr19	54291143	54291210	MIR372	+	miRNA	chr19	54290850	54291423	AC008753.3	-	lncRNA	67	opposite	8398_ID	chr19	54291144	54291210	67	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	2
822	ENST00000362348.1	ENST00000371497.10_4	chr20	51714190	51714523	RN7SKP184	+	misc_RNA	chr20	51588896	52111869	TSHZ2	+	protein_coding	333	same	9810_ID	chr20	51714191	51714523	333	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
825	ENST00000362367.1	ENST00000551063.5_1	chr12	49986886	49986996	RNU6-834P	+	snRNA	chr12	49962154	50024408	PRPF40B	+	protein_coding	110	same	11542_ID	chr12	49986887	49986996	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
829	ENST00000362392.1	ENST00000247655.4_4	chr5	85916322	85916385	MIR3607	+	snoRNA	chr5	85913757	85916779	COX7C	+	protein_coding	63	same	8340_ID	chr5	85916323	85916385	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
840	ENST00000362465.1	ENST00000649900.1_1	chr4	3045827	3045934	RNU6-204P	+	snRNA	chr4	3043288	3088749	HTT	+	processed_transcript	107	same	11072_ID	chr4	3045828	3045934	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
874	ENST00000362733.1	ENST00000629773.2_6	chr2	38374556	38374663	RNU6-951P	+	snRNA	chr2	38302842	38458793	CYP1B1-AS1	+	lncRNA	107	same	11633_ID	chr2	38374557	38374663	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
888	ENST00000362808.1	ENST00000520368.5_1	chr8	124056956	124057052	RNY4P5	+	misc_RNA	chr8	124054207	124096509	TBC1D31	+	protein_coding	96	same	11862_ID	chr8	124056957	124057052	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
918	ENST00000362969.1	ENST00000595084.3_2	chr3	181540659	181540778	RNA5SP150	-	rRNA	chr3	181417385	181554667	SOX2-OT	+	lncRNA	119	opposite	10507_ID	chr3	181540660	181540778	119	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
928	ENST00000363050.1	ENST00000473897.1_3	chrX	133894237	133894378	RNU4-44P	-	snRNA	chrX	133700539	133898293	PLAC1	-	processed_transcript	141	same	10682_ID	chrX	133894238	133894378	141	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
929	ENST00000363054.1	ENST00000660768.1_3	chr4	53361014	53361118	RNU6-1252P	+	snRNA	chr4	53118985	53417740	AC097522.2	-	lncRNA	104	opposite	10949_ID	chr4	53361015	53361118	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
934	ENST00000363091.1	ENST00000493536.6_4	chr17	74557190	74557274	SNORD1B	+	snoRNA	chr17	74553845	74561430	SNHG16	+	lncRNA	84	same	12387_ID	chr17	74557191	74557274	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
940	ENST00000363116.1	ENST00000472596.1_3	chr3	180298844	180298951	RNU6-486P	+	snRNA	chr3	180284505	180319723	AC125618.1	-	lncRNA	107	opposite	11277_ID	chr3	180298845	180298951	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
968	ENST00000363291.1	ENST00000668914.1_1	chr5	148495740	148496043	RN7SKP145	-	misc_RNA	chr5	148443654	148509141	SH3TC2-DT	+	lncRNA	303	opposite	9788_ID	chr5	148495741	148496043	303	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1034	ENST00000363625.1	ENST00000355360.8_2	chr1	249206888	249206994	RNU6-1205P	-	snRNA	chr1	249200394	249214145	PGBD2	+	protein_coding	106	opposite	10910_ID	chr1	249206889	249206994	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1065	ENST00000363778.1	ENST00000624694.2_2	chr5	175130900	175131007	RNU6-226P	+	snRNA	chr5	175110170	175137728	HRH2	+	nonsense_mediated_decay	107	same	11084_ID	chr5	175130901	175131007	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1073	ENST00000363816.1	ENST00000607862.5_1	chr13	78929361	78929463	RNY3P3	-	misc_RNA	chr13	78493823	79158297	OBI1-AS1	+	lncRNA	102	opposite	11840_ID	chr13	78929362	78929463	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1096	ENST00000363937.1	ENST00000660178.1_1	chr2	60611739	60611898	RNU1-32P	+	snRNA	chr2	60610275	60612929	AC007381.1	+	lncRNA	159	same	10578_ID	chr2	60611740	60611898	159	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
1099	ENST00000363947.1	ENST00000335397.3_2	chr11	57794177	57794284	RNU6-899P	-	snRNA	chr11	57791352	57949088	OR9Q1	+	protein_coding	107	opposite	11593_ID	chr11	57794178	57794284	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1141	ENST00000364180.1	ENST00000507311.1_5	chr4	165708441	165708548	RNU6-668P	+	snRNA	chr4	165675282	165724947	SMIM31	+	protein_coding	107	same	11419_ID	chr4	165708442	165708548	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1163	ENST00000364314.1	ENST00000557172.5_3	chr14	104033741	104033882	RNU4-68P	+	snRNA	chr14	104028232	104124071	KLC1	+	protein_coding	141	same	10702_ID	chr14	104033742	104033882	141	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1287	ENST00000364943.1	ENST00000458054.1_1	chr2	196535095	196535198	RNU6-915P	-	snRNA	chr2	196440700	196545144	SLC39A10	+	protein_coding	103	opposite	11609_ID	chr2	196535096	196535198	103	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1297	ENST00000364977.1	ENST00000375915.4_4	chr13	107973242	107973311	SNORD31	-	snoRNA	chr13	107815857	108519844	FAM155A	-	protein_coding	69	same	12395_ID	chr13	107973243	107973311	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1317	ENST00000365130.1	ENST00000662475.1_3	chr4	88921388	88921553	RNU1-36P	+	snRNA	chr4	88895536	88929629	AC131944.1	-	lncRNA	165	opposite	10582_ID	chr4	88921389	88921553	165	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1349	ENST00000365336.1	ENST00000606986.1_3	chr2	196378759	196378866	RNU6-169P	+	snRNA	chr2	196316501	196380423	AC064834.1	-	lncRNA	107	opposite	11046_ID	chr2	196378760	196378866	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1355	ENST00000365372.1	ENST00000523566.5_3	chr8	27631161	27631265	RNU6-1276P	+	snRNA	chr8	27629465	27634387	ESCO2	+	protein_coding	104	same	10968_ID	chr8	27631162	27631265	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1368	ENST00000365471.1	ENST00000662924.1_3	chr2	237923846	237923948	RNU6-1051P	-	snRNA	chr2	237819439	237994411	AC012063.1	-	lncRNA	102	same	10797_ID	chr2	237923847	237923948	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1380	ENST00000365557.1	ENST00000424612.1_3	chr2	114438687	114438794	RNU6-744P	+	snRNA	chr2	114435278	114461655	AC017074.1	-	lncRNA	107	opposite	11470_ID	chr2	114438688	114438794	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1384	ENST00000365561.1	ENST00000660587.1_1	chr7	34337107	34337210	RNU6-438P	-	snRNA	chr7	34249076	34338624	AC009262.1	+	lncRNA	103	opposite	11241_ID	chr7	34337108	34337210	103	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
1387	ENST00000365575.1	ENST00000660617.1_4	chr9	97270019	97270126	RNU6-669P	+	snRNA	chr9	97247726	97273896	AL358232.2	-	lncRNA	107	opposite	11420_ID	chr9	97270020	97270126	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1390	ENST00000365626.1	ENST00000414422.1	chr1	149605916	149606079	RNVU1-20	+	snRNA	chr1	149605639	149633208	RP11-353N4.8	+	processed_transcript	163	same	11826_ID	chr1	149605917	149606079	163	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1398	ENST00000365690.2	ENST00000553692.1_1	chr14	101513657	101513735	MIR539	+	miRNA	chr14	101511493	101518132	MIR381HG	+	lncRNA	78	same	8861_ID	chr14	101513658	101513735	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1403	ENST00000366136.2_1	ENST00000435676.2_6	chr1	166050419	166056720	FAM78B-AS1	+	lncRNA	chr1	166026662	166135462	FAM78B	-	nonsense_mediated_decay	6301	opposite	6996_ID	chr1	166050420	166056720	6301	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1407	ENST00000366314.4_1	ENST00000637419.1_3	chr16	85316563	85319569	LINC00311	+	lncRNA	chr16	85203130	85667738	GSE1	+	protein_coding	3006	same	7541_ID	chr16	85316564	85319569	3006	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1417	ENST00000366553.3_6	ENST00000463155.5_3	chr1	241792152	241803671	CHML	-	protein_coding	chr1	241757513	241840678	OPN3	-	processed_transcript	11519	same	6640_ID	chr1	241792153	241803671	11519	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1421	ENST00000367029.5_2	ENST00000441672.1_3	chr1	209848756	209849735	G0S2	+	protein_coding	chr1	209834710	209897470	HSD11B1-AS1	-	lncRNA	979	opposite	7093_ID	chr1	209848757	209849735	979	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1423	ENST00000367136.5_4	ENST00000656763.1_1	chr1	205797152	205819260	PM20D1	-	protein_coding	chr1	205782449	205865207	AC119673.2	+	lncRNA	22108	opposite	9589_ID	chr1	205797153	205819260	22108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1425	ENST00000367188.5_4	ENST00000443515.1_1	chr1	204372508	204380945	PPP1R15B	-	protein_coding	chr1	204346977	204404974	AL606489.1	+	lncRNA	8437	opposite	9614_ID	chr1	204372509	204380945	8437	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1433	ENST00000367935.10_5	ENST00000431696.1_6	chr1	162342992	162346644	SPATA46	-	protein_coding	chr1	162335196	162351905	AL512785.2	+	protein_coding	3652	opposite	12515_ID	chr1	162342993	162346644	3652	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1445	ENST00000368713.8_4	ENST00000368714.1_3	chr1	153519804	153521734	S100A3	-	protein_coding	chr1	153516096	153522612	S100A4	-	protein_coding	1930	same	11984_ID	chr1	153519805	153521734	1930	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1469	ENST00000370640.5_2	ENST00000370647.8_1	chr10	99349477	99350691	C10orf62	+	protein_coding	chr10	99344099	99372559	HOGA1	+	protein_coding	1214	same	6466_ID	chr10	99349478	99350691	1214	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1480	ENST00000371467.5_3	ENST00000604414.1_1	chr10	95351443	95361420	RBP4	-	protein_coding	chr10	95326438	95364237	FFAR4	+	protein_coding	10058	opposite	9724_ID	chr10	95351444	95361420	9977	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1481	ENST00000371505.5_4	ENST00000438774.2_2	chr6	44246470	44265435	TCTE1	-	protein_coding	chr6	44238479	44275243	TMEM151B	+	protein_coding	18965	opposite	12649_ID	chr6	44246471	44265435	18965	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1499	ENST00000372868.6_1	ENST00000445420.5_3	chr20	43343484	43356452	CCN5	+	protein_coding	chr20	43323842	43374636	KCNK15-AS1	-	lncRNA	13666	opposite	6584_ID	chr20	43343485	43356452	12968	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1504	ENST00000373171.2_3	ENST00000451810.3_2	chr6	40312082	40313890	LINC00951	-	lncRNA	chr6	40302513	40347626	TDRG1	+	lncRNA	1808	opposite	7584_ID	chr6	40312083	40313890	1808	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1520	ENST00000374781.2_3	ENST00000668299.1_1	chr9	107298029	107299137	OR13C3	-	protein_coding	chr9	107282127	107299463	AL450426.1	+	lncRNA	1108	opposite	9353_ID	chr9	107298030	107299137	1108	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
1536	ENST00000375625.3_1	ENST00000669760.1_3	chrX	51942962	51946358	AC245177.1	+	lncRNA	chrX	51938958	52009046	AC231759.2	-	lncRNA	3396	opposite	4309_ID	chrX	51942963	51946358	3396	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1563	ENST00000377428.4_2	ENST00000623418.1_3	chr20	18794426	18795022	SCP2D1	+	protein_coding	chr20	18790371	18810797	SCP2D1-AS1	-	lncRNA	596	opposite	12014_ID	chr20	18794427	18795022	596	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1567	ENST00000377930.1_2	ENST00000614894.4_1	chr13	57721621	57724643	PRR20B	+	protein_coding	chr13	57715051	57731216	PRR20C	+	protein_coding	3022	same	9650_ID	chr13	57721622	57724643	3022	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1596	ENST00000380211.1_2	ENST00000380252.6_4	chr11	5461799	5462744	OR51I1	-	protein_coding	chr11	5274419	5526835	HBG2	-	protein_coding	945	same	9420_ID	chr11	5461800	5462744	945	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1600	ENST00000380219.1_2	ENST00000380252.6_4	chr11	5372737	5373676	OR51B6	+	protein_coding	chr11	5274419	5526835	HBG2	-	protein_coding	939	opposite	9409_ID	chr11	5372738	5373676	939	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1604	ENST00000380224.2_4	ENST00000380252.6_4	chr11	5322243	5323176	OR51B4	-	protein_coding	chr11	5274419	5526835	HBG2	-	protein_coding	933	same	9407_ID	chr11	5322244	5323176	933	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1645	ENST00000383860.1	ENST00000533670.1_1	chr11	67663101	67663208	RNU6-46P	+	snRNA	chr11	67654060	67673821	LINC02754	+	lncRNA	107	same	11265_ID	chr11	67663102	67663208	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1650	ENST00000383874.1	ENST00000613215.4_1	chr4	109573305	109573412	RNU6-431P	+	snRNA	chr4	109571740	109588974	OSTC	+	protein_coding	107	same	11234_ID	chr4	109573306	109573412	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1660	ENST00000383889.1	ENST00000658937.1_1	chr15	24022583	24022690	RNU6-741P	-	snRNA	chr15	24002261	24101522	AC087490.1	+	lncRNA	107	opposite	11468_ID	chr15	24022584	24022690	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1661	ENST00000383890.1	ENST00000655413.1_1	chr13	74863236	74863351	RNY1P5	-	misc_RNA	chr13	74862206	74982947	AL353660.1	+	lncRNA	115	opposite	11834_ID	chr13	74863237	74863351	115	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1667	ENST00000383898.1	ENST00000558889.5_1	chr15	68132276	68132383	RNU6-1	-	snRNA	chr15	68125062	68166204	AC009292.2	+	lncRNA	107	opposite	10755_ID	chr15	68132277	68132383	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1679	ENST00000383940.2	ENST00000661853.1_1	chr15	46952855	46952958	RNU6-1014P	+	snRNA	chr15	46702506	46953301	AC012405.1	+	lncRNA	103	same	10766_ID	chr15	46952856	46952958	103	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
1706	ENST00000383996.1	ENST00000416061.1_3	chrX	48582859	48582966	RNU6-1056P	-	snRNA	chrX	48557353	48595570	AC231533.1	-	lncRNA	107	same	10800_ID	chrX	48582860	48582966	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1733	ENST00000384075.1	ENST00000608591.5_2	chr21	27563025	27563132	RNU6-926P	+	snRNA	chr21	27543188	27589700	AP000229.1	+	lncRNA	107	same	11615_ID	chr21	27563026	27563132	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1746	ENST00000384125.1	ENST00000220772.8_4	chr8	41155681	41155784	RNU6-895P	+	snRNA	chr8	41119480	41166992	SFRP1	-	protein_coding	103	opposite	11590_ID	chr8	41155682	41155784	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1814	ENST00000384314.1	ENST00000670989.1_3	chrX	140212214	140212321	RNU6-3P	-	snRNA	chrX	140205783	140271283	LDOC1	-	processed_transcript	107	same	11209_ID	chrX	140212215	140212321	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1825	ENST00000384355.1	ENST00000567287.2_1	chr16	69209573	69209680	RNU6-22P	-	snRNA	chr16	69201006	69265033	UTP4	+	processed_transcript	107	opposite	11087_ID	chr16	69209574	69209680	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1880	ENST00000384516.1	ENST00000670881.1_3	chr15	25351667	25351750	SNORD116-29	+	snoRNA	chr15	25336932	25352616	AC124312.5	-	lncRNA	83	opposite	12347_ID	chr15	25351668	25351750	83	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
1886	ENST00000384531.1	ENST00000513289.5_5	chr5	27111675	27111781	RNU6-738P	+	snRNA	chr5	26915862	27121257	CDH9	-	protein_coding	106	opposite	11466_ID	chr5	27111676	27111781	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1896	ENST00000384548.1	ENST00000577649.1_2	chr18	3894698	3894805	RNU6-831P	-	snRNA	chr18	3878179	3897069	DLGAP1-AS3	+	lncRNA	107	opposite	11539_ID	chr18	3894699	3894805	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1904	ENST00000384576.1	ENST00000582246.1_1	chr17	46274041	46274148	RNU6-1152P	-	snRNA	chr17	46263299	46281891	SKAP1-AS1	+	lncRNA	107	opposite	10858_ID	chr17	46274042	46274148	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1923	ENST00000384608.1	ENST00000419832.1_1	chr7	123098041	123098148	RNU6-296P	-	snRNA	chr7	123096682	123099910	AC073323.1	+	lncRNA	107	opposite	11137_ID	chr7	123098042	123098148	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1932	ENST00000384631.1	ENST00000666189.1_3	chr8	28273964	28274068	RNU6-178P	+	snRNA	chr8	28272015	28274110	AC025871.3	-	lncRNA	104	opposite	11052_ID	chr8	28273965	28274068	104	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
1966	ENST00000384731.1	ENST00000646572.1_3	chr11	118573050	118573156	RNU6-376P	+	snRNA	chr11	118571135	118579557	AP002954.1	+	lncRNA	106	same	11192_ID	chr11	118573051	118573156	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1972	ENST00000384760.1	ENST00000243440.2_4	chr1	212865605	212865709	RNU6-423P	+	snRNA	chr1	212859758	212873182	BATF3	-	protein_coding	104	opposite	11225_ID	chr1	212865606	212865709	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
1978	ENST00000384774.1	ENST00000625869.1_6	chr3	186489629	186489736	RNU6-1105P	-	snRNA	chr3	186461512	186490775	AC068631.1	-	lncRNA	107	same	10832_ID	chr3	186489630	186489736	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
1991	ENST00000384819.1	ENST00000602324.1_3	chr19	52195864	52195934	MIR99B	+	miRNA	chr19	52188615	52196709	SPACA6P-AS	-	lncRNA	70	opposite	9125_ID	chr19	52195865	52195934	70	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
2003	ENST00000384831.1	ENST00000651138.1_1	chr11	111384163	111384240	MIR34C	+	miRNA	chr11	111381324	111384613	AP002008.4	+	lncRNA	77	same	8337_ID	chr11	111384164	111384240	77	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
2011	ENST00000384840.1	ENST00000636668.1_4	chrX	133303407	133303482	MIR363	-	miRNA	chrX	133302940	133308119	AC002407.1	-	lncRNA	75	same	8359_ID	chrX	133303408	133303482	75	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
2013	ENST00000384843.1	ENST00000450652.2_2	chr22	21388464	21388561	MIR649	-	miRNA	chr22	21385642	21398406	AC002472.1	+	lncRNA	97	opposite	9056_ID	chr22	21388465	21388561	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2021	ENST00000384852.1	ENST00000470747.4_3	chr7	27209098	27209183	MIR196B	-	miRNA	chr7	27203153	27219632	AC004080.3	-	protein_coding	85	same	8154_ID	chr7	27209099	27209183	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2025	ENST00000384855.1	ENST00000553692.1_1	chr14	101514994	101515085	MIR544A	+	miRNA	chr14	101511493	101518132	MIR381HG	+	lncRNA	91	same	8863_ID	chr14	101514995	101515085	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2031	ENST00000384865.1	ENST00000445907.6_1	chr7	136587913	136588041	MIR490	+	miRNA	chr7	136553415	136705002	CHRM2	+	protein_coding	128	same	8797_ID	chr7	136587914	136588041	128	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2034	ENST00000384868.1	ENST00000416569.3_5	chr8	10892715	10892812	MIR598	-	miRNA	chr8	10753554	11059342	XKR6	-	protein_coding	97	same	9000_ID	chr8	10892716	10892812	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2036	ENST00000384870.1	ENST00000636668.1_4	chrX	133304227	133304308	MIR106A	-	miRNA	chrX	133302940	133308119	AC002407.1	-	lncRNA	81	same	7961_ID	chrX	133304228	133304308	81	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
2069	ENST00000384915.1	ENST00000413053.2_3	chr11	64658608	64658718	MIR192	-	miRNA	chr11	64657031	64660921	MIR194-2HG	-	lncRNA	110	same	8147_ID	chr11	64658609	64658718	110	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
2082	ENST00000384964.1	ENST00000510645.5_3	chr4	24521814	24521913	MIR573	-	miRNA	chr4	24519063	24534574	DHX15	-	processed_transcript	99	same	8976_ID	chr4	24521815	24521913	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2091	ENST00000384977.1	ENST00000636668.1_4	chrX	133303838	133303907	MIR20B	-	miRNA	chrX	133302940	133308119	AC002407.1	-	lncRNA	69	same	8171_ID	chrX	133303839	133303907	69	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
2098	ENST00000384992.1	ENST00000602461.1_4	chrX	45606420	45606530	MIR222	-	miRNA	chrX	45604638	45629677	MIR222HG	-	lncRNA	110	same	8192_ID	chrX	45606421	45606530	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2117	ENST00000385021.1	ENST00000553692.1_1	chr14	101512791	101512875	MIR487B	+	miRNA	chr14	101511493	101518132	MIR381HG	+	lncRNA	84	same	8793_ID	chr14	101512792	101512875	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2121	ENST00000385026.1	ENST00000660348.1_3	chr1	198828172	198828282	MIR181A1	-	miRNA	chr1	198746989	198906550	MIR181A1HG	-	lncRNA	110	same	8118_ID	chr1	198828173	198828282	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2134	ENST00000385044.1	ENST00000590797.2_1	chr18	56118305	56118390	MIR122	+	miRNA	chr18	56113506	56120998	MIR122HG	+	lncRNA	85	same	7982_ID	chr18	56118306	56118390	85	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
2152	ENST00000385076.1	ENST00000651138.1_1	chr11	111383662	111383746	MIR34B	+	miRNA	chr11	111381324	111384613	AP002008.4	+	lncRNA	84	same	8336_ID	chr11	111383663	111383746	84	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
2153	ENST00000385077.2	ENST00000636668.1_4	chrX	133303700	133303797	MIR19B2	-	miRNA	chrX	133302940	133308119	AC002407.1	-	lncRNA	97	same	8165_ID	chrX	133303701	133303797	97	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
2155	ENST00000385080.1	ENST00000654595.1_2	chr3	15915277	15915356	MIR563	+	miRNA	chr3	15901664	15917486	AC090945.1	+	lncRNA	79	same	8948_ID	chr3	15915278	15915356	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2156	ENST00000385081.1	ENST00000521441.2_2	chr8	65291705	65291814	MIR124-2	+	miRNA	chr8	65285737	65296344	MIR124-2HG	+	lncRNA	109	same	7997_ID	chr8	65291706	65291814	109	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2168	ENST00000385130.1	ENST00000635687.1_3	chr1	9211726	9211836	MIR34A	-	miRNA	chr1	9208069	9242451	MIR34AHG	-	lncRNA	110	same	8335_ID	chr1	9211727	9211836	110	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
2171	ENST00000385135.1	ENST00000602461.1_4	chrX	45605584	45605694	MIR221	-	miRNA	chrX	45604638	45629677	MIR222HG	-	lncRNA	110	same	8191_ID	chrX	45605585	45605694	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2191	ENST00000385204.1	ENST00000618234.4_1	chrX	65238711	65238821	MIR223	+	miRNA	chrX	65235302	65240264	MIR223HG	+	lncRNA	110	same	8193_ID	chrX	65238712	65238821	110	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
2220	ENST00000385240.1	ENST00000660348.1_3	chr1	198828001	198828111	MIR181B1	-	miRNA	chr1	198746989	198906550	MIR181A1HG	-	lncRNA	110	same	8122_ID	chr1	198828002	198828111	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2239	ENST00000385270.1	ENST00000414769.2_4	chrX	133680357	133680428	MIR503	-	miRNA	chrX	133677148	133680672	MIR503HG	-	lncRNA	71	same	8819_ID	chrX	133680358	133680428	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2241	ENST00000385273.1	ENST00000602324.1_3	chr19	52196506	52196592	MIR125A	+	miRNA	chr19	52188615	52196709	SPACA6P-AS	-	lncRNA	86	opposite	8012_ID	chr19	52196507	52196592	86	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
2257	ENST00000385299.1	ENST00000636668.1_4	chrX	133303567	133303642	MIR92A2	-	miRNA	chrX	133302940	133308119	AC002407.1	-	lncRNA	75	same	9106_ID	chrX	133303568	133303642	75	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
2270	ENST00000387974.1	ENST00000572349.1_3	chr17	44998489	44998615	RNU6ATAC3P	+	snRNA	chr17	44994135	45000400	AC005670.1	-	lncRNA	126	opposite	11682_ID	chr17	44998490	44998615	126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2283	ENST00000390127.1	ENST00000642529.1_1	chr4	130241	130349	AC118278.1	+	miRNA	chr4	124382	196092	ZNF718	+	nonsense_mediated_decay	108	same	3943_ID	chr4	130242	130349	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2326	ENST00000390695.2	ENST00000409911.5_4	chr2	77247461	77247547	AC079117.2	-	miRNA	chr2	76974844	77749465	LRRTM4	-	protein_coding	86	same	2621_ID	chr2	77247462	77247547	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2351	ENST00000390805.2	ENST00000668844.1_3	chr1	222186348	222186432	AC092765.1	-	miRNA	chr1	222184166	222238115	LINC01705	-	lncRNA	84	same	3146_ID	chr1	222186349	222186432	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2374	ENST00000390914.1	ENST00000422014.1	chr22	16276397	16276504	RNU6-816P	-	snRNA	chr22	16274559	16278602	POTEH-AS1	+	antisense	107	opposite	11525_ID	chr22	16276398	16276504	107	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
2391	ENST00000391001.1	ENST00000422968.2_1	chr7	135350346	135350450	RNU6-1154P	-	snRNA	chr7	135347311	135378166	STMP1	+	processed_transcript	104	opposite	10860_ID	chr7	135350347	135350450	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2399	ENST00000391056.1	ENST00000671332.1_1	chr12	17224331	17224439	RNU6-837P	-	snRNA	chr12	17219301	17228565	AC092793.1	+	lncRNA	108	opposite	11544_ID	chr12	17224332	17224439	108	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2407	ENST00000391077.1	ENST00000564814.1_1	chr16	58411955	58412052	RNU6-269P	-	snRNA	chr16	58329300	58426478	GINS3	+	processed_transcript	97	opposite	11116_ID	chr16	58411956	58412052	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2416	ENST00000391095.1	ENST00000665326.1_1	chr11	112473076	112473175	snosnR66	-	snoRNA	chr11	112263896	112495290	LINC02763	+	lncRNA	99	opposite	12472_ID	chr11	112473077	112473175	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2452	ENST00000391270.1	ENST00000582435.1_1	chr18	9617961	9618070	RNU6-903P	-	snRNA	chr18	9615261	9619361	PPP4R1-AS1	+	lncRNA	109	opposite	11599_ID	chr18	9617962	9618070	109	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2475	ENST00000392842.6_2	ENST00000551505.4_4	chr12	106976781	107156581	RFX4	+	protein_coding	chr12	106889735	107168696	AC079385.1	-	lncRNA	179800	opposite	9737_ID	chr12	106976782	107156581	179800	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2489	ENST00000394718.4_2	ENST00000555220.5_3	chr14	64932216	64941221	AKAP5	+	protein_coding	chr14	64915823	64971931	ZBTB25	-	protein_coding	9005	opposite	4427_ID	chr14	64932217	64941221	9005	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2491	ENST00000394815.3_5	ENST00000640420.1_2	chr12	52562779	52585798	KRT80	-	protein_coding	chr12	52557898	52617584	LINC00592	+	lncRNA	23019	opposite	7472_ID	chr12	52562780	52585798	23019	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2500	ENST00000396056.7_2	ENST00000457331.1_3	chr3	44690223	44702283	ZNF35	+	protein_coding	chr3	44598848	44727145	ZKSCAN7-AS1	-	lncRNA	12060	opposite	13040_ID	chr3	44690224	44702283	12060	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2508	ENST00000396720.7_1	ENST00000599924.1_1	chr19	48111452	48206534	BICRA	+	protein_coding	chr19	48110780	48236355	AC010519.1	+	lncRNA	95082	same	6415_ID	chr19	48111453	48206534	95082	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2522	ENST00000397764.8_5	ENST00000441928.1_1	chr7	112756772	112758609	SMIM30	-	protein_coding	chr7	112740717	112786095	AC073346.1	+	lncRNA	1843	opposite	12133_ID	chr7	112756773	112758609	1837	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2543	ENST00000400102.3	ENST00000416569.3_5	chr8	10983979	10987745	AF131215.5	-	protein_coding	chr8	10753554	11059342	XKR6	-	protein_coding	22448	same	4396_ID	chr8	10983980	10987745	3766	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2559	ENST00000401119.1	ENST00000515609.1_3	chr1	154166140	154166219	MIR190B	-	miRNA	chr1	154163678	154167124	TPM3	-	protein_coding	79	same	8138_ID	chr1	154166141	154166219	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2561	ENST00000401133.1	ENST00000435676.2_6	chr1	166123979	166124035	MIR921	-	miRNA	chr1	166026662	166135462	FAM78B	-	nonsense_mediated_decay	56	same	9102_ID	chr1	166123980	166124035	56	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2580	ENST00000401223.1	ENST00000663117.1_1	chr3	197401366	197401447	MIR922	-	miRNA	chr3	197392186	197401734	AC024560.5	+	lncRNA	81	opposite	9104_ID	chr3	197401367	197401447	81	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
2596	ENST00000401278.2	ENST00000635999.1_1	chr6	138038084	138038179	AL357060.1	+	miRNA	chr6	137994519	138085121	AL356234.2	+	lncRNA	95	same	5412_ID	chr6	138038085	138038179	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2597	ENST00000401280.1	ENST00000553692.1_1	chr14	101514237	101514316	MIR889	+	miRNA	chr14	101511493	101518132	MIR381HG	+	lncRNA	79	same	9098_ID	chr14	101514238	101514316	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2604	ENST00000401304.1	ENST00000523874.1_1	chr8	23626068	23626158	AC012119.1	-	miRNA	chr8	23564653	23647000	AC012574.1	+	lncRNA	90	opposite	1334_ID	chr8	23626069	23626158	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2635	ENST00000406487.6_4	ENST00000635495.1_1	chr19	43568360	43586853	PSG2	-	protein_coding	chr19	43481614	43675667	AC004784.1	+	lncRNA	18837	opposite	9663_ID	chr19	43568361	43586853	18493	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2658	ENST00000408112.1	ENST00000474642.1_3	chr22	20236656	20236734	MIR1286	-	miRNA	chr22	20230371	20270769	RTN4R	-	processed_transcript	78	same	8048_ID	chr22	20236657	20236734	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2666	ENST00000408128.1	ENST00000666960.1_3	chr2	114340535	114340673	MIR1302-3	-	miRNA	chr2	114339930	114340729	AL078621.2	-	lncRNA	138	same	8068_ID	chr2	114340536	114340673	138	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	2
2667	ENST00000408132.1	ENST00000319595.6_2	chr3	87959369	87959495	RNU6ATAC6P	+	snRNA	chr3	87841641	88042937	HTR1F	+	protein_coding	126	same	11686_ID	chr3	87959370	87959495	126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2751	ENST00000408363.1	ENST00000366654.5_4	chr1	231155573	231155670	MIR1182	-	miRNA	chr1	231154703	231176000	FAM89A	-	protein_coding	97	same	7968_ID	chr1	231155574	231155670	97	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
2773	ENST00000408420.1	ENST00000438963.2_2	chr2	176195100	176195200	AC096649.4	+	miRNA	chr2	176122069	176327908	AC093459.1	+	lncRNA	100	same	3284_ID	chr2	176195101	176195200	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2785	ENST00000408456.1	ENST00000453606.5_3	chr2	30288989	30289079	AC016907.1	-	miRNA	chr2	30273931	30363532	AC016907.2	-	lncRNA	90	same	1572_ID	chr2	30288990	30289079	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2801	ENST00000408496.1	ENST00000661031.1_1	chr1	33391894	33392000	AL031602.1	+	miRNA	chr1	33391054	33417239	AL031602.2	+	lncRNA	106	same	4530_ID	chr1	33391895	33392000	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2805	ENST00000408503.1	ENST00000657704.1_1	chr5	153726665	153726807	MIR1294	+	miRNA	chr5	153725601	153727394	AC008625.1	+	lncRNA	142	same	8059_ID	chr5	153726666	153726807	142	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
2823	ENST00000408541.1	ENST00000650340.1_3	chr10	43837233	43837358	RNU6ATAC11P	+	snRNA	chr10	43821280	43846240	AC068707.1	-	lncRNA	125	opposite	11662_ID	chr10	43837234	43837358	125	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2826	ENST00000408546.2	ENST00000375915.4_4	chr13	108288378	108288464	AL138710.1	+	miRNA	chr13	107815857	108519844	FAM155A	-	protein_coding	86	opposite	4969_ID	chr13	108288379	108288464	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2866	ENST00000408635.1	ENST00000305031.5_2	chr5	129310583	129310694	RNU6ATAC10P	+	snRNA	chr5	129240157	129522327	CHSY3	+	protein_coding	111	same	11661_ID	chr5	129310584	129310694	111	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2867	ENST00000408636.1	ENST00000662838.1_3	chr4	67142541	67142646	MIR1269A	+	miRNA	chr4	67035495	67195095	AC110809.1	-	lncRNA	105	opposite	8024_ID	chr4	67142542	67142646	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2892	ENST00000408684.1	ENST00000542078.2_2	chr12	13124986	13125077	SNORD88	+	snoRNA	chr12	13080667	13137015	GPRC5D-AS1	+	lncRNA	91	same	12457_ID	chr12	13124987	13125077	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2897	ENST00000408701.1	ENST00000438824.1_1	chr2	208133998	208134148	MIR1302-4	-	miRNA	chr2	208125168	208135414	LINC01802	+	lncRNA	150	opposite	8069_ID	chr2	208133999	208134148	150	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2899	ENST00000408707.1	ENST00000337975.6_4	chr15	86313726	86313809	MIR1276	-	miRNA	chr15	86302556	86338156	KLHL25	-	protein_coding	83	same	8035_ID	chr15	86313727	86313809	83	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2903	ENST00000408723.1	ENST00000375915.4_4	chr13	108183518	108183596	MIR1267	-	miRNA	chr13	107815857	108519844	FAM155A	-	protein_coding	78	same	8023_ID	chr13	108183519	108183596	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2923	ENST00000408754.1	ENST00000641650.1_1	chr3	125551271	125551371	AC092902.1	-	miRNA	chr3	125485358	125571779	AC092902.4	+	lncRNA	100	opposite	3166_ID	chr3	125551272	125551371	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2930	ENST00000408780.2	ENST00000464588.1_3	chr1	45697889	45697979	AL592294.1	-	miRNA	chr1	45553746	45771881	ZSWIM5	-	processed_transcript	90	same	5808_ID	chr1	45697890	45697979	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2933	ENST00000408790.1	ENST00000657225.1_3	chr10	128245531	128245633	AL583860.1	-	miRNA	chr10	128202416	128487277	C10orf90	-	processed_transcript	102	same	5732_ID	chr10	128245532	128245633	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
2941	ENST00000408810.1	ENST00000641650.1_1	chr3	125509246	125509395	MIR548I1	-	miRNA	chr3	125485358	125571779	AC092902.4	+	lncRNA	149	opposite	8903_ID	chr3	125509247	125509395	149	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2970	ENST00000408874.1	ENST00000649869.1_1	chr16	11400296	11400384	MIR548H2	-	miRNA	chr16	11343483	11475519	RMI2	+	processed_transcript	88	opposite	8901_ID	chr16	11400297	11400384	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2991	ENST00000409710.1_3	ENST00000656025.1_3	chr2	74699112	74699814	MRPL53	-	protein_coding	chr2	74692465	74700088	AC005041.5	+	lncRNA	706	opposite	9166_ID	chr2	74699113	74699814	702	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
3012	ENST00000410144.1	ENST00000612595.2_2	chr15	96289032	96289223	RNU2-3P	+	snRNA	chr15	96181544	96369728	AC015574.1	+	lncRNA	191	same	10637_ID	chr15	96289033	96289223	191	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3021	ENST00000410170.1	ENST00000518905.1_1	chr5	151083849	151084139	RN7SKP232	-	misc_RNA	chr5	151056533	151104343	CLMAT3	+	lncRNA	290	opposite	9838_ID	chr5	151083850	151084139	290	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3042	ENST00000410293.1	ENST00000527297.1_1	chr11	152998	153102	RNU6-447P	-	snRNA	chr11	129278	186136	AC069287.3	+	lncRNA	104	opposite	11252_ID	chr11	152999	153102	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3045	ENST00000410299.1	ENST00000668249.1_3	chr8	77177777	77177967	RNU2-54P	-	snRNA	chr8	77074353	77220550	AC011029.1	-	lncRNA	190	same	10645_ID	chr8	77177778	77177967	190	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3049	ENST00000410344.1	ENST00000438650.5_1	chr14	96850960	96851152	RNU2-33P	+	snRNA	chr14	96829788	96853623	GSKIP	+	protein_coding	192	same	10630_ID	chr14	96850961	96851152	192	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3064	ENST00000410394.1	ENST00000574708.5_1	chr11	61582632	61582712	MIR1908	-	miRNA	chr11	61560451	61593984	FADS2	+	protein_coding	80	opposite	8134_ID	chr11	61582633	61582712	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3075	ENST00000410427.1	ENST00000568070.1_1	chr16	90210999	90211103	RNU6-355P	+	snRNA	chr16	90172868	90244014	FAM157C	+	lncRNA	104	same	11176_ID	chr16	90211000	90211103	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3080	ENST00000410432.1	ENST00000490159.1_1	chr7	65860177	65860273	RNU6-96P	+	snRNA	chr7	65817490	65885530	TPST1	+	processed_transcript	96	same	11644_ID	chr7	65860178	65860273	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3110	ENST00000410540.1	ENST00000606916.1_1	chr13	97601502	97601787	RN7SKP7	-	misc_RNA	chr13	97600271	97601838	AL353581.1	+	lncRNA	285	opposite	9913_ID	chr13	97601503	97601787	285	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
3126	ENST00000410619.1	ENST00000663633.1_3	chr5	73567506	73567590	AC106732.1	-	miRNA	chr5	73407514	73832649	LINC01331	-	lncRNA	84	same	3638_ID	chr5	73567507	73567590	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3139	ENST00000410697.1	ENST00000415732.1_9	chr10	127579134	127579247	RNU2-42P	-	snRNA	chr10	127555697	127585005	DHX32	-	protein_coding	113	same	10638_ID	chr10	127579135	127579247	113	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3147	ENST00000410719.1	ENST00000421109.6_1	chr15	96876489	96876536	MIR1469	+	miRNA	chr15	96869166	96881847	NR2F2	+	protein_coding	47	same	8098_ID	chr15	96876490	96876536	47	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3154	ENST00000410773.1	ENST00000421132.1_3	chr10	28731503	28731825	RN7SKP39	-	misc_RNA	chr10	28721936	28784742	LINC02652	-	lncRNA	322	same	9894_ID	chr10	28731504	28731825	322	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3162	ENST00000410800.1	ENST00000393792.3_4	chr5	171706205	171706319	AC008671.1	+	miRNA	chr5	171636649	171710768	UBTD2	-	protein_coding	114	opposite	770_ID	chr5	171706206	171706319	114	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3171	ENST00000410858.1	ENST00000666403.1_3	chr5	139776907	139777029	RNU4-14P	-	snRNA	chr5	139750480	139781045	AC008438.1	-	lncRNA	122	same	10660_ID	chr5	139776908	139777029	122	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3210	ENST00000411072.1	ENST00000651142.1_3	chr5	24811589	24811657	SNORD29	+	snoRNA	chr5	24772252	24851080	AC106821.2	-	lncRNA	68	opposite	12393_ID	chr5	24811590	24811657	68	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3246	ENST00000411313.1	ENST00000653206.1_1	chr2	42098410	42098528	RNU4-63P	+	snRNA	chr2	42087294	42121190	LINC01913	+	lncRNA	118	same	10701_ID	chr2	42098411	42098528	118	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3258	ENST00000411374.1	ENST00000448264.2_2	chr1	225928976	225929084	RNU6-1304P	+	snRNA	chr1	225888305	225939950	AC099066.2	+	lncRNA	108	same	10994_ID	chr1	225928977	225929084	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3268	ENST00000411409.1	ENST00000437748.2_3	chr13	45634863	45635221	RN7SKP3	+	misc_RNA	chr13	45556211	45657260	AL359706.1	-	lncRNA	358	opposite	9888_ID	chr13	45634864	45635221	358	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3278	ENST00000411641.7_2	ENST00000630178.2_5	chr3	186330848	186339107	AHSG	+	protein_coding	chr3	186297264	186461626	AC068631.1	-	lncRNA	8259	opposite	4419_ID	chr3	186330849	186339107	8259	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3306	ENST00000412090.2_3	ENST00000424148.1_1	chr11	1618406	1619524	KRTAP5-2	-	protein_coding	chr11	1593970	1620414	KRTAP5-AS1	+	lncRNA	1118	opposite	7496_ID	chr11	1618407	1619524	1118	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
3326	ENST00000412497.1_1	ENST00000609470.6_2	chr20	1342265	1343229	AL136531.1	+	lncRNA	chr20	1306048	1359378	SDCBP2-AS1	+	lncRNA	964	same	4919_ID	chr20	1342266	1343229	964	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3332	ENST00000412641.1_5	ENST00000457331.1_3	chr3	44626379	44670882	ZNF197	+	protein_coding	chr3	44598848	44727145	ZKSCAN7-AS1	-	lncRNA	63584	opposite	13025_ID	chr3	44626380	44670882	44503	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3344	ENST00000412972.1_1	ENST00000420488.6_5	chr20	30274018	30304628	BCL2L1-AS1	+	lncRNA	chr20	30252265	30311792	BCL2L1	-	protein_coding	30610	opposite	6405_ID	chr20	30274019	30304628	30610	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3347	ENST00000413094.1_3	ENST00000670444.1_3	chr7	68652819	68654305	AC069280.1	-	lncRNA	chr7	68651807	68769170	AC092100.1	-	lncRNA	2392	same	2481_ID	chr7	68652820	68654305	1486	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3364	ENST00000413501.1_3	ENST00000656176.1_1	chr13	25746965	25754217	LINC00463	-	lncRNA	chr13	25743106	25764771	LINC01053	+	lncRNA	7252	opposite	7555_ID	chr13	25746966	25754217	7252	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3371	ENST00000413943.1_3	ENST00000531950.1_4	chr1	70825244	70826120	HHLA3-AS1	-	lncRNA	chr1	70820526	70851022	HHLA3	+	lncRNA	876	opposite	7235_ID	chr1	70825245	70826120	876	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3384	ENST00000414135.1_3	ENST00000453157.1_3	chr2	217347754	217351919	AC098820.1	-	lncRNA	chr2	217343752	217363484	RPL37A-DT	-	lncRNA	4165	same	3342_ID	chr2	217347755	217351919	4165	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3397	ENST00000414505.1_3	ENST00000338305.7_4	chr6	40469369	40470132	AL359475.1	-	lncRNA	chr6	40359329	40555103	LRFN2	-	protein_coding	763	same	5487_ID	chr6	40469370	40470132	763	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3414	ENST00000414816.1_3	ENST00000566108.2_2	chr16	24672742	24682383	LINC01567	-	lncRNA	chr16	24621529	24762098	TNRC6A	+	processed_transcript	9641	opposite	7651_ID	chr16	24672743	24682383	9641	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3418	ENST00000414903.1_1	ENST00000660339.1_3	chr10	92214454	92262725	AL391704.1	+	lncRNA	chr10	92210251	92388609	LINC02653	-	lncRNA	48799	opposite	5581_ID	chr10	92214455	92262725	48271	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3466	ENST00000415934.1_1	ENST00000324453.13_4	chr7	30180485	30181033	AC007036.2	+	lncRNA	chr7	30174601	30202378	MTURN	+	protein_coding	548	same	498_ID	chr7	30180486	30181033	548	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3475	ENST00000416179.1_1	ENST00000419522.5_8	chr21	43916648	43917553	AP001625.3	+	lncRNA	chr21	43916127	43938620	SLC37A1	+	protein_coding	905	same	6156_ID	chr21	43916649	43917553	905	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3491	ENST00000416644.5_5	ENST00000457331.1_3	chr3	44619714	44635803	ZNF660	+	protein_coding	chr3	44598848	44727145	ZKSCAN7-AS1	-	lncRNA	21472	opposite	13062_ID	chr3	44619715	44635803	16089	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3495	ENST00000416842.1_1	ENST00000663561.1_3	chr21	40218170	40220568	AP001042.2	+	lncRNA	chr21	40184801	40277347	AP001042.1	-	lncRNA	2398	opposite	6074_ID	chr21	40218171	40220568	2398	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3500	ENST00000417096.5_3	ENST00000666421.1_1	chr2	208051440	208100607	AC007879.3	-	lncRNA	chr2	208030843	208113116	MYOSLID	+	lncRNA	49350	opposite	657_ID	chr2	208051441	208100607	49167	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3507	ENST00000417213.1_3	ENST00000629773.2_6	chr2	38359778	38366088	AC009229.2	-	lncRNA	chr2	38302842	38458793	CYP1B1-AS1	+	lncRNA	6310	opposite	920_ID	chr2	38359779	38366088	6310	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3533	ENST00000418001.1_3	ENST00000435984.1_1	chr2	75146681	75151973	AC104135.1	-	lncRNA	chr2	75145274	75159921	LINC01291	+	lncRNA	5292	opposite	3514_ID	chr2	75146682	75151973	5292	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3543	ENST00000418270.1_1	ENST00000355358.1_3	chr10	8093503	8095047	AL390294.1	+	lncRNA	chr10	8092412	8095447	GATA3-AS1	-	lncRNA	1544	opposite	5555_ID	chr10	8093504	8095047	1544	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
3546	ENST00000418390.6_3	ENST00000655402.1_3	chr1	24069644	24088549	ELOA	+	protein_coding	chr1	24033390	24104773	ELOA-AS1	-	lncRNA	18905	opposite	6896_ID	chr1	24069645	24088549	18905	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3553	ENST00000418539.2_2	ENST00000448713.5_3	chr2	47562453	47562653	BCYRN1	+	scRNA	chr2	47419543	47572128	EPCAM-DT	-	lncRNA	200	opposite	6408_ID	chr2	47562454	47562653	200	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3562	ENST00000418660.1_3	ENST00000658904.1_1	chr13	112760408	112761196	LINC00404	-	lncRNA	chr13	112711329	112762325	SOX1-OT	+	lncRNA	788	opposite	7547_ID	chr13	112760409	112761196	788	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3565	ENST00000418776.1_5	ENST00000630178.2_5	chr3	186299783	186314892	AC068631.2	+	protein_coding	chr3	186297264	186461626	AC068631.1	-	lncRNA	15109	opposite	2427_ID	chr3	186299784	186314892	15109	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3567	ENST00000418835.1_1	ENST00000670239.1_1	chr2	10987702	10995081	AC092687.1	+	lncRNA	chr2	10984602	11025239	LINC01954	+	lncRNA	7379	same	3121_ID	chr2	10987703	10995081	7379	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3587	ENST00000419474.5_4	ENST00000553985.1_1	chr14	23990065	24020974	ZFHX2	-	protein_coding	chr14	23982025	24029987	ZFHX2-AS1	+	lncRNA	35336	opposite	13013_ID	chr14	23990066	24020974	30909	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3592	ENST00000419624.1_1	ENST00000635495.1_1	chr19	43657430	43665014	AC005392.1	+	lncRNA	chr19	43481614	43675667	AC004784.1	+	lncRNA	7584	same	293_ID	chr19	43657431	43665014	7584	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3616	ENST00000420161.1_1	ENST00000663402.1_1	chr2	114737485	114740835	AC110769.1	+	lncRNA	chr2	114728295	114764879	LINC01191	+	lncRNA	10188	same	3796_ID	chr2	114737486	114740835	3350	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3626	ENST00000420417.3_1	ENST00000653552.1_3	chr8	99973655	99980512	AC016877.1	+	lncRNA	chr8	99970641	100025971	VPS13B-DT	-	lncRNA	6857	opposite	1569_ID	chr8	99973656	99980512	6857	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3648	ENST00000421041.1_1	ENST00000560961.2_5	chr9	126772808	126773393	AC006450.1	+	lncRNA	chr9	126763948	126777640	LHX2	+	protein_coding	585	same	465_ID	chr9	126772809	126773393	585	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3667	ENST00000421601.2_1	ENST00000663663.1_1	chr13	107306263	107324511	LINC00443	+	lncRNA	chr13	107220830	107369027	LINC00551	+	lncRNA	18281	same	7550_ID	chr13	107306264	107324511	18248	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3678	ENST00000421825.2_2	ENST00000456062.2_4	chr7	119806496	119826118	AC004946.2	+	lncRNA	chr7	119781069	119867267	AC004946.1	-	lncRNA	19622	opposite	202_ID	chr7	119806497	119826118	19622	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3690	ENST00000422017.1_4	ENST00000414394.1_1	chr2	193508827	193510113	AC013401.1	-	lncRNA	chr2	193494644	193510432	AC062039.1	+	lncRNA	1286	opposite	1439_ID	chr2	193508828	193510113	1286	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
3717	ENST00000422661.1_3	ENST00000434878.1_1	chr10	103012577	103023307	LINC02681	-	lncRNA	chr10	102997694	103029905	LBX1-AS1	+	lncRNA	10730	opposite	7791_ID	chr10	103012578	103023307	10730	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3720	ENST00000422697.1_1	ENST00000634803.1_3	chr7	10742302	10747033	AC004415.1	+	lncRNA	chr7	10489446	10819571	MGC4859	-	lncRNA	4731	opposite	125_ID	chr7	10742303	10747033	4731	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3733	ENST00000422963.1_1	ENST00000361320.5_2	chr10	68812366	68814786	AL139240.1	+	lncRNA	chr10	68685793	68861309	LRRTM3	+	protein_coding	2420	same	5021_ID	chr10	68812367	68814786	2420	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3753	ENST00000423499.3_3	ENST00000427327.1_3	chr9	39395733	39397403	BX005214.2	-	lncRNA	chr9	39384502	39405302	BX005214.1	-	lncRNA	1670	same	6446_ID	chr9	39395734	39397403	1670	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3757	ENST00000423661.1_6	ENST00000608079.5_1	chrX	134252880	134254454	ETDB	-	protein_coding	chrX	134193714	134257532	SMIM10L2B-AS1	+	lncRNA	1574	opposite	6936_ID	chrX	134252881	134254454	1574	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3759	ENST00000423777.7_2	ENST00000451973.1_3	chr19	50432461	50437192	ATF5	+	protein_coding	chr19	50412757	50461648	AC011452.1	-	nonsense_mediated_decay	5234	opposite	6361_ID	chr19	50432462	50437192	4731	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3761	ENST00000423781.1_1	ENST00000433337.1_3	chr7	47009313	47067079	AC004870.2	+	lncRNA	chr7	46930224	47089276	AC004870.4	-	lncRNA	57838	opposite	187_ID	chr7	47009314	47067079	57766	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3799	ENST00000424792.5_3	ENST00000428417.5_1	chr1	15490839	15497813	C1orf195	-	lncRNA	chr1	15479027	15546973	TMEM51	+	protein_coding	6974	opposite	6496_ID	chr1	15490840	15497813	6974	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3804	ENST00000424933.1_3	ENST00000668861.1_1	chr21	44560632	44561202	FRGCA	-	lncRNA	chr21	44528051	44588756	AP001631.2	+	lncRNA	570	opposite	7080_ID	chr21	44560633	44561202	570	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3824	ENST00000425365.1_1	ENST00000660339.1_3	chr10	92222473	92227709	AL391704.2	+	lncRNA	chr10	92210251	92388609	LINC02653	-	lncRNA	5236	opposite	5582_ID	chr10	92222474	92227709	5236	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3834	ENST00000425690.8_4	ENST00000662585.1_3	chr19	45147209	45169430	PVR	+	protein_coding	chr19	45134873	45228481	AC243964.3	-	lncRNA	22333	opposite	9685_ID	chr19	45147210	45169430	22221	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3855	ENST00000426775.1_1	ENST00000370932.6_3	chr1	71413061	71417176	AL031429.1	+	lncRNA	chr1	71318035	71513491	PTGER3	-	protein_coding	4115	opposite	4519_ID	chr1	71413062	71417176	4115	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3885	ENST00000428148.1_3	ENST00000448264.2_2	chr1	225898669	225923976	AC099066.1	-	lncRNA	chr1	225888305	225939950	AC099066.2	+	lncRNA	25307	opposite	3352_ID	chr1	225898670	225923976	25307	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3936	ENST00000429389.1_3	ENST00000664694.1_1	chr1	2730996	2731563	AL592464.1	-	lncRNA	chr1	2730620	2734332	AL592464.3	+	lncRNA	567	opposite	5817_ID	chr1	2730997	2731563	567	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
3969	ENST00000430259.1_3	ENST00000590829.5_1	chr21	47671725	47674047	AP001469.3	-	lncRNA	chr21	47649130	47679304	MCM3AP-AS1	+	lncRNA	2585	opposite	6140_ID	chr21	47671726	47674047	2322	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
3971	ENST00000430364.1_1	ENST00000673857.1_1	chr6	31409443	31414750	LINC01149	+	lncRNA	chr6	31368478	31431482	AL645933.3	+	lncRNA	5307	same	7609_ID	chr6	31409444	31414750	5307	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3979	ENST00000430471.1_3	ENST00000367311.5_4	chr1	201433510	201434274	AC096677.2	-	lncRNA	chr1	201433405	201438316	PHLDA3	-	protein_coding	764	same	3287_ID	chr1	201433511	201434274	764	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
4027	ENST00000431955.1_1	ENST00000429410.2_1	chr1	110268441	110317874	AL158847.1	+	lncRNA	chr1	110254888	110318050	GSTM5	+	processed_transcript	49433	same	5121_ID	chr1	110268442	110317874	49433	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
4058	ENST00000432706.1_3	ENST00000371497.10_4	chr20	51785181	51796089	AL391097.1	-	lncRNA	chr20	51588896	52111869	TSHZ2	+	protein_coding	10908	opposite	5569_ID	chr20	51785182	51796089	10908	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4078	ENST00000433279.1	ENST00000655874.1_1	chrX	56100756	56102014	AL353698.1	+	protein_coding	chrX	55934715	56235704	AL050309.1	+	lncRNA	1258	same	5255_ID	chrX	56100757	56102014	1258	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4084	ENST00000433425.4_5	ENST00000608079.5_1	chrX	134229014	134232742	SMIM10L2B	-	protein_coding	chrX	134193714	134257532	SMIM10L2B-AS1	+	lncRNA	3728	opposite	12126_ID	chrX	134229015	134232742	3728	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4098	ENST00000433840.1_3	ENST00000668861.1_1	chr21	44579175	44582387	AP001631.1	-	lncRNA	chr21	44528051	44588756	AP001631.2	+	lncRNA	34758	opposite	6157_ID	chr21	44579176	44582387	3212	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4112	ENST00000434396.1_3	ENST00000560009.1_3	chr15	40573644	40574787	ANKRD63	-	protein_coding	chr15	40570376	40581773	PLCB2	-	retained_intron	1143	same	5956_ID	chr15	40573645	40574787	1143	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4130	ENST00000434859.1_1	ENST00000668921.1_2	chr21	25415571	25422601	AP000477.1	+	lncRNA	chr21	25354959	25486665	AP000477.3	-	lncRNA	7030	opposite	5994_ID	chr21	25415572	25422601	7030	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4138	ENST00000435057.1_3	ENST00000371497.10_4	chr20	51812767	51825244	AL391097.2	-	lncRNA	chr20	51588896	52111869	TSHZ2	+	protein_coding	12477	opposite	5570_ID	chr20	51812768	51825244	12477	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4143	ENST00000435156.1_3	ENST00000607862.5_1	chr13	78849854	78851649	AL138957.1	-	lncRNA	chr13	78493823	79158297	OBI1-AS1	+	lncRNA	1795	opposite	4989_ID	chr13	78849855	78851649	1795	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4163	ENST00000435643.1_1	ENST00000666421.1_1	chr2	208038357	208087514	AC007879.1	+	lncRNA	chr2	208030843	208113116	MYOSLID	+	lncRNA	49157	same	654_ID	chr2	208038358	208087514	49157	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4169	ENST00000435858.1_3	ENST00000412306.1_6	chr6	82236818	82244630	AL122017.1	-	lncRNA	chr6	82201155	82461529	TENT5A	-	protein_coding	7814	same	4797_ID	chr6	82236819	82244630	7812	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4176	ENST00000436039.1_1	ENST00000366609.3_4	chr1	234742753	234745229	AL160408.2	+	lncRNA	chr1	234740014	234745271	IRF2BP2	-	protein_coding	2476	opposite	5143_ID	chr1	234742754	234745229	2476	*	+	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	1	2
4183	ENST00000436286.2_3	ENST00000371497.10_4	chr20	52014198	52029448	AL354993.1	-	lncRNA	chr20	51588896	52111869	TSHZ2	+	protein_coding	15250	opposite	5308_ID	chr20	52014199	52029448	15250	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4225	ENST00000437156.1_3	ENST00000329454.2_2	chr1	16332654	16333166	AL355994.3	-	lncRNA	chr1	16330730	16335302	SRARP	+	protein_coding	512	opposite	5366_ID	chr1	16332655	16333166	512	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
4233	ENST00000437429.6_3	ENST00000626572.2_3	chr1	110905472	110933704	SLC16A4	-	protein_coding	chr1	110889737	110960984	LAMTOR5-AS1	+	lncRNA	28232	opposite	12074_ID	chr1	110905473	110933704	28232	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4280	ENST00000438923.1_3	ENST00000663069.1_1	chr7	15728699	15730479	AC005550.1	-	lncRNA	chr7	15728039	15736511	LINC02587	+	lncRNA	1780	opposite	317_ID	chr7	15728700	15730479	1780	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4290	ENST00000439186.1_1	ENST00000417975.1_3	chr1	84255962	84267148	AL035706.1	+	lncRNA	chr1	84041458	84326679	LINC01725	-	lncRNA	11186	opposite	4618_ID	chr1	84255963	84267148	11186	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4291	ENST00000439196.1_3	ENST00000435573.1_2	chr2	692082	693235	AC092159.2	-	lncRNA	chr2	680080	697371	TMEM18-DT	+	lncRNA	1153	opposite	3065_ID	chr2	692083	693235	1153	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4302	ENST00000439438.1_1	ENST00000667274.1_3	chr9	93881343	93945044	LINC00484	+	lncRNA	chr9	93867238	93975328	AL158071.2	-	lncRNA	64171	opposite	7556_ID	chr9	93881344	93945044	63701	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4314	ENST00000439798.1_3	ENST00000418025.1_1	chr2	235353233	235363239	LINC01891	-	lncRNA	chr2	235346971	235370771	AC097713.1	+	lncRNA	10006	opposite	7695_ID	chr2	235353234	235363239	10006	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4341	ENST00000440545.1_3	ENST00000666421.1_1	chr2	208100022	208102599	AC007879.4	-	lncRNA	chr2	208030843	208113116	MYOSLID	+	lncRNA	2577	opposite	658_ID	chr2	208100023	208102599	2577	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4355	ENST00000440932.1_3	ENST00000670247.1_1	chr10	30842782	30843412	AL590068.1	-	lncRNA	chr10	30818445	30843554	AL590068.4	+	lncRNA	630	opposite	5749_ID	chr10	30842783	30843412	630	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
4357	ENST00000441025.2_4	ENST00000605259.2_2	chr9	44997999	44998719	AL391987.1	-	protein_coding	chr9	44997776	44999352	AL391987.2	+	protein_coding	720	opposite	5592_ID	chr9	44998000	44998719	720	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	2
4370	ENST00000441360.1_1	ENST00000664534.1_1	chr1	234796016	234802850	AL160408.4	+	lncRNA	chr1	234791797	234818922	AL160408.1	+	lncRNA	6834	same	5144_ID	chr1	234796017	234802850	6834	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4374	ENST00000441459.1_3	ENST00000428673.1_1	chr1	232310677	232315859	AL353052.2	-	lncRNA	chr1	232295836	232321389	AL353052.1	+	lncRNA	5182	opposite	5233_ID	chr1	232310678	232315859	5182	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4381	ENST00000441845.1_1	ENST00000505762.1_4	chr6	53863687	53871950	MLIP-IT1	+	lncRNA	chr6	53794779	53989452	MLIP	+	protein_coding	8263	same	9146_ID	chr6	53863688	53871950	8263	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4391	ENST00000442055.5_3	ENST00000559265.1_1	chr1	26143239	26146263	AL020996.1	-	lncRNA	chr1	26137960	26149799	AL020996.2	+	retained_intron	4049	opposite	4439_ID	chr1	26143240	26146263	3024	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4405	ENST00000442389.1_3	ENST00000654812.1_3	chr20	12286260	12297133	AL136460.1	-	lncRNA	chr20	12223955	12298869	AL109838.1	-	lncRNA	10873	same	4915_ID	chr20	12286261	12297133	10873	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4443	ENST00000443373.1_3	ENST00000661508.1_1	chr16	26596075	26606134	LINC02195	-	lncRNA	chr16	26558122	26618713	AC002331.1	+	lncRNA	10059	opposite	7746_ID	chr16	26596076	26606134	10059	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4449	ENST00000443792.1_1	ENST00000661858.1_3	chr9	5584489	5588994	AL162253.1	+	lncRNA	chr9	5457476	5629748	AL162253.2	-	lncRNA	4505	opposite	5186_ID	chr9	5584490	5588994	4505	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4462	ENST00000444217.1_3	ENST00000421915.5_1	chr2	27272550	27273132	AGBL5-AS1	-	lncRNA	chr2	27265231	27276022	AGBL5	+	protein_coding	582	opposite	4415_ID	chr2	27272551	27273132	582	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4475	ENST00000444852.1_1	ENST00000485891.1_3	chr2	75701578	75709705	AC007099.2	+	lncRNA	chr2	75696427	75788062	EVA1A	-	processed_transcript	8127	opposite	505_ID	chr2	75701579	75709705	8127	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4481	ENST00000444966.1_1	ENST00000590829.5_1	chr21	47666803	47667596	AP001469.2	+	lncRNA	chr21	47649130	47679304	MCM3AP-AS1	+	lncRNA	793	same	6138_ID	chr21	47666804	47667596	793	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4490	ENST00000445178.1_1	ENST00000409911.5_4	chr2	77213090	77236917	LRRTM4-AS1	+	lncRNA	chr2	76974844	77749465	LRRTM4	-	protein_coding	23827	opposite	7875_ID	chr2	77213091	77236917	23827	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4491	ENST00000445201.1	ENST00000427169.1_1	chr1	147767898	147769378	RP11-495P10.7	-	lincRNA	chr1	147767286	147769663	LINC02806	+	lncRNA	1480	opposite	11915_ID	chr1	147767899	147769378	1480	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
4515	ENST00000445908.1_3	ENST00000438408.1_3	chr3	197177197	197183525	AC128709.1	-	lncRNA	chr3	197171931	197185194	AC128709.2	-	lncRNA	6328	same	4046_ID	chr3	197177198	197183525	6328	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4519	ENST00000446001.1_1	ENST00000379287.4_4	chr6	13486525	13487084	GFOD1-AS1	+	lncRNA	chr6	13358061	13487832	GFOD1	-	protein_coding	559	opposite	7115_ID	chr6	13486526	13487084	559	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
4559	ENST00000446989.1_3	ENST00000646956.1_1	chr13	115095033	115099423	LINC01054	-	lncRNA	chr13	115079956	115103101	CHAMP1	+	processed_transcript	4390	opposite	7596_ID	chr13	115095034	115099423	4390	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4570	ENST00000447315.1_3	ENST00000451810.3_2	chr6	40326482	40337213	AL139275.1	-	lncRNA	chr6	40302513	40347626	TDRG1	+	lncRNA	10731	opposite	5027_ID	chr6	40326483	40337213	10731	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4586	ENST00000447691.2_3	ENST00000412641.1_5	chr3	44658619	44666289	ZNF197-AS1	-	lncRNA	chr3	44626379	44670882	ZNF197	+	protein_coding	7670	opposite	13027_ID	chr3	44658620	44666289	7670	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4587	ENST00000447691.2_3	ENST00000457331.1_3	chr3	44658619	44666289	ZNF197-AS1	-	lncRNA	chr3	44598848	44727145	ZKSCAN7-AS1	-	lncRNA	7670	same	13026_ID	chr3	44658620	44666289	7670	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4622	ENST00000448824.1_1	ENST00000656791.1_3	chr6	171004400	171006038	AL731661.1	+	lncRNA	chr6	170924602	171037581	AL672310.1	+	lncRNA	1638	same	5902_ID	chr6	171004401	171006038	1638	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4629	ENST00000448909.1_3	ENST00000427015.1_1	chr6	148062569	148064460	AL365271.1	-	lncRNA	chr6	147981838	148275073	AL033504.1	+	lncRNA	1891	opposite	5536_ID	chr6	148062570	148064460	1891	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4647	ENST00000449551.1_3	ENST00000375915.4_4	chr13	108440689	108487799	FAM155A-IT1	-	lncRNA	chr13	107815857	108519844	FAM155A	-	protein_coding	47110	same	6963_ID	chr13	108440690	108487799	47110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4653	ENST00000449764.5_3	ENST00000424859.6_3	chr7	104379044	104444535	LHFPL3-AS1	-	lncRNA	chr7	103969236	104547679	LHFPL3	+	protein_coding	65511	opposite	7522_ID	chr7	104379045	104444535	65491	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4658	ENST00000449928.1_1	ENST00000662357.1_1	chr6	68765242	68770394	AL646090.1	+	lncRNA	chr6	68750602	68802893	AL646090.2	+	lncRNA	5152	same	5869_ID	chr6	68765243	68770394	5152	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4672	ENST00000450458.1_3	ENST00000424383.4_1	chr7	1731541	1732086	AC074389.3	-	lncRNA	chr7	1727754	1787590	ELFN1	+	protein_coding	545	opposite	2579_ID	chr7	1731542	1732086	545	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4675	ENST00000450509.1_1	ENST00000397463.3_4	chr2	133418098	133424563	AC010974.1	+	lncRNA	chr2	133400858	133427778	LYPD1	-	protein_coding	6465	opposite	1166_ID	chr2	133418099	133424563	6465	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4677	ENST00000450521.5_2	ENST00000630178.2_5	chr3	186353757	186370420	FETUB	+	protein_coding	chr3	186297264	186461626	AC068631.1	-	lncRNA	17173	opposite	7014_ID	chr3	186353758	186370420	16663	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4681	ENST00000450779.1	ENST00000411776.1	chr9	41285356	41287306	RP11-95K23.5	+	antisense	chr9	41277732	41298538	RP11-95K23.6	+	lincRNA	1950	same	11940_ID	chr9	41285357	41287306	1950	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4703	ENST00000451240.1_1	ENST00000262041.6_4	chr7	15707571	15721605	AC005550.2	+	lncRNA	chr7	15650836	15726308	MEOX2	-	protein_coding	14034	opposite	318_ID	chr7	15707572	15721605	14034	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4705	ENST00000451275.1_3	ENST00000596085.1_1	chr19	58208734	58220562	ZNF154	-	nonsense_mediated_decay	chr19	58193402	58228669	ZNF551	+	protein_coding	11828	opposite	13020_ID	chr19	58208735	58220562	11828	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4722	ENST00000451622.2_1	ENST00000485891.1_3	chr2	75751193	75769832	AC007099.1	+	lncRNA	chr2	75696427	75788062	EVA1A	-	processed_transcript	18639	opposite	504_ID	chr2	75751194	75769832	18639	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4734	ENST00000451784.1_3	ENST00000435676.2_6	chr1	166117018	166134332	AL596087.3	-	lncRNA	chr1	166026662	166135462	FAM78B	-	nonsense_mediated_decay	17314	same	5820_ID	chr1	166117019	166134332	17314	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4742	ENST00000452009.1_3	ENST00000341049.7_2	chr7	116182771	116192023	AC006159.1	-	lncRNA	chr7	116165089	116201233	CAV1	+	protein_coding	9252	opposite	433_ID	chr7	116182772	116192023	9252	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4788	ENST00000453339.2_3	ENST00000654786.1_1	chr17	15179878	15182794	AC005703.1	-	lncRNA	chr17	15170164	15215077	AC005703.6	+	lncRNA	2916	opposite	338_ID	chr17	15179879	15182794	2916	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4789	ENST00000453348.1_3	ENST00000424383.4_1	chr7	1778265	1781908	ELFN1-AS1	-	lncRNA	chr7	1727754	1787590	ELFN1	+	protein_coding	3662	opposite	6893_ID	chr7	1778266	1781908	3643	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4795	ENST00000453529.2_3	ENST00000560961.2_5	chr9	126768555	126771675	AC006450.3	-	lncRNA	chr9	126763948	126777640	LHX2	+	protein_coding	3120	opposite	467_ID	chr9	126768556	126771675	3120	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4802	ENST00000453806.1_3	ENST00000452495.1_2	chr2	3485012	3486180	TRAPPC12-AS1	-	lncRNA	chr2	3481485	3488865	TRAPPC12	+	protein_coding	1168	opposite	12772_ID	chr2	3485013	3486180	1168	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4808	ENST00000453936.1_3	ENST00000422294.4_2	chr2	47079158	47080635	AC016722.1	-	lncRNA	chr2	47043835	47085349	LINC01119	+	lncRNA	1477	opposite	1556_ID	chr2	47079159	47080635	1477	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4831	ENST00000454444.1_1	ENST00000666421.1_1	chr2	208091672	208093032	AC007879.2	+	lncRNA	chr2	208030843	208113116	MYOSLID	+	lncRNA	1360	same	656_ID	chr2	208091673	208093032	1360	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4832	ENST00000454489.1_3	ENST00000675665.1_1	chr2	11528148	11530493	AC099344.2	-	lncRNA	chr2	11512737	11543301	LINC00570	+	lncRNA	2345	opposite	3358_ID	chr2	11528149	11530493	2345	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4835	ENST00000454574.2	ENST00000636668.1_4	chrX	133304063	133304146	MIR18B	-	miRNA	chrX	133302940	133308119	AC002407.1	-	lncRNA	83	same	8133_ID	chrX	133304064	133304146	83	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
4841	ENST00000454890.1_1	ENST00000650999.1_3	chr2	231773566	231774817	AC012507.1	+	lncRNA	chr2	231772042	231789957	GPR55	-	protein_coding	1251	opposite	1396_ID	chr2	231773567	231774817	1251	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
4849	ENST00000455126.5_1	ENST00000543956.5_4	chr13	47426277	47430434	HTR2A-AS1	+	lncRNA	chr13	47405689	47471211	HTR2A	-	protein_coding	4157	opposite	7314_ID	chr13	47426278	47430434	4157	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4873	ENST00000455699.1_3	ENST00000661505.1_3	chr10	91454051	91457685	AL157400.4	-	lncRNA	chr10	91427198	91460983	AL157400.3	-	lncRNA	3634	same	5061_ID	chr10	91454052	91457685	3634	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4920	ENST00000456890.1_1	ENST00000426550.1_3	chr7	62809238	62812151	AC006455.5	+	retained_intron	chr7	62787051	62814704	AC006455.1	-	lncRNA	2914	opposite	468_ID	chr7	62809239	62812151	2913	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4933	ENST00000457116.1_3	ENST00000412306.1_6	chr6	82434438	82446070	AL078599.2	-	lncRNA	chr6	82201155	82461529	TENT5A	-	protein_coding	11632	same	4665_ID	chr6	82434439	82446070	11632	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4981	ENST00000458555.1_3	ENST00000624697.4_5	chr1	947376	948573	AL645608.1	-	lncRNA	chr1	936517	949920	ISG15	+	protein_coding	1197	opposite	5858_ID	chr1	947377	948573	1197	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
4993	ENST00000458790.1	ENST00000663232.1_1	chr5	111497181	111497314	SNORA13	+	snoRNA	chr5	111496222	111500515	EPB41L4A-AS1	+	lncRNA	133	same	12157_ID	chr5	111497182	111497314	133	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4994	ENST00000458791.1	ENST00000495546.1_1	chr2	190749489	190749579	AC008122.1	+	miRNA	chr2	190744352	191028777	C2orf88	+	processed_transcript	90	same	705_ID	chr2	190749490	190749579	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4998	ENST00000458811.1	ENST00000542222.1_1	chr12	7052978	7053041	RNU7-1	+	snRNA	chr12	7052595	7055166	C12orf57	+	processed_transcript	63	same	11690_ID	chr12	7052979	7053041	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5022	ENST00000458885.1	ENST00000574681.1_3	chr16	11442583	11442653	AC009121.1	+	miRNA	chr16	11441999	11443178	AC009121.2	-	lncRNA	70	opposite	887_ID	chr16	11442584	11442653	70	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
5023	ENST00000458885.1	ENST00000649869.1_1	chr16	11442583	11442653	AC009121.1	+	miRNA	chr16	11343483	11475519	RMI2	+	processed_transcript	70	same	888_ID	chr16	11442584	11442653	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5046	ENST00000459092.1	ENST00000548594.6_4	chr12	103507811	103507865	RNU7-184P	-	snRNA	chr12	103473443	103572453	AC068643.1	-	lncRNA	54	same	11750_ID	chr12	103507812	103507865	54	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5054	ENST00000459161.1	ENST00000655443.1_3	chr2	91951950	91952044	AC027612.2	+	miRNA	chr2	91947487	91955727	AC027612.3	-	lncRNA	94	opposite	2220_ID	chr2	91951951	91952044	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5055	ENST00000459169.1	ENST00000651312.1_3	chr21	9683190	9683272	CR381670.1	+	miRNA	chr21	9651218	9725398	CR381670.2	-	lncRNA	82	opposite	6705_ID	chr21	9683191	9683272	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5056	ENST00000459170.1	ENST00000669756.1_1	chr6	26988113	26988226	TRNAI2	+	miRNA	chr6	26924710	26991738	LINC00240	+	lncRNA	113	same	12790_ID	chr6	26988114	26988226	113	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5058	ENST00000459174.1	ENST00000582718.1_3	chr17	27049599	27049671	SNORD4A	+	snoRNA	chr17	27048504	27049895	AC010761.1	-	lncRNA	72	opposite	12414_ID	chr17	27049600	27049671	72	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
5116	ENST00000459467.1	ENST00000665330.1_1	chr10	1088232	1088295	RNU7-163P	-	snRNA	chr10	1068576	1091365	IDI2-AS1	+	lncRNA	63	opposite	11736_ID	chr10	1088233	1088295	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5118	ENST00000459473.1	ENST00000508179.1_1	chr5	9548947	9549017	SNORD123	+	snoRNA	chr5	9546311	9550721	SNHG18	+	lncRNA	70	same	12364_ID	chr5	9548948	9549017	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5132	ENST00000459576.1	ENST00000552828.5_3	chr12	106676704	106676767	RNU7-94P	-	snRNA	chr12	106633671	106698029	CKAP4	-	processed_transcript	63	same	11820_ID	chr12	106676705	106676767	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5172	ENST00000462010.1_3	ENST00000655310.1_1	chr3	112769758	112782290	AC078785.2	-	lncRNA	chr3	112738314	112903224	AC078785.1	+	lncRNA	12532	opposite	2582_ID	chr3	112769759	112782290	12532	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5173	ENST00000462015.2	ENST00000663852.1_3	chr3	42717683	42717983	RN7SL567P	-	misc_RNA	chr3	42707364	42725285	AC006059.5	-	lncRNA	300	same	10274_ID	chr3	42717684	42717983	300	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5216	ENST00000464673.1_3	ENST00000487840.5_1	chr3	149795280	149797904	LINC01998	-	lncRNA	chr3	149757000	149931401	AC117386.2	+	lncRNA	2624	opposite	7711_ID	chr3	149795281	149797904	2624	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5235	ENST00000466169.2	ENST00000627003.2_5	chr7	79947568	79947857	RN7SL35P	+	misc_RNA	chr7	79941889	80003203	AC004862.1	-	lncRNA	289	opposite	10129_ID	chr7	79947569	79947857	289	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5236	ENST00000466184.2	ENST00000655402.1_3	chr1	24063099	24063380	RN7SL532P	-	misc_RNA	chr1	24033390	24104773	ELOA-AS1	-	lncRNA	281	same	10254_ID	chr1	24063100	24063380	281	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5249	ENST00000467060.2	ENST00000596365.5_1	chr21	35291349	35291642	RN7SL740P	-	misc_RNA	chr21	35287837	35341887	LINC00649	+	lncRNA	293	opposite	10396_ID	chr21	35291350	35291642	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5250	ENST00000467082.2_3	ENST00000676364.1_1	chr8	76079938	76088891	LINC02886	-	lncRNA	chr8	76032643	76236705	CASC9	-	lncRNA	8953	same	7815_ID	chr8	76079939	76088891	8953	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5314	ENST00000471176.2_1	ENST00000497148.5_3	chr3	149694541	149697115	AC117395.1	+	lncRNA	chr3	149683947	149768575	PFN2	-	protein_coding	2601	opposite	3927_ID	chr3	149694542	149697115	2574	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5317	ENST00000471553.1_3	ENST00000478318.6_3	chr7	89748612	89752204	AC004969.1	-	lncRNA	chr7	89511666	89840949	STEAP2-AS1	-	lncRNA	52126	same	207_ID	chr7	89748613	89752204	3592	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5341	ENST00000472915.2_1	ENST00000337478.3_4	chr10	106071898	106073639	AL162742.1	+	lncRNA	chr10	106069457	106098223	ITPRIP	-	protein_coding	1741	opposite	5223_ID	chr10	106071899	106073639	1741	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
5360	ENST00000473798.1_1	ENST00000624927.3_2	chr1	761585	762902	LINC00115	-	lncRNA	chr1	760517	784972	LINC01128	+	lncRNA	1317	opposite	7530_ID	chr1	761586	762902	1317	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5388	ENST00000475891.2	ENST00000671386.1_1	chrX	63430569	63430866	RN7SL799P	+	misc_RNA	chrX	63425853	63453735	AL356317.1	+	lncRNA	297	same	10441_ID	chrX	63430570	63430866	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5421	ENST00000478313.1_2	ENST00000342108.2_3	chr21	37898577	37915153	AP000696.2	-	lncRNA	chr21	37832918	37948867	CLDN14	-	protein_coding	16576	same	6012_ID	chr21	37898578	37915153	16576	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5422	ENST00000478343.2	ENST00000457577.7_3	chr2	200765805	200766100	RN7SL717P	-	misc_RNA	chr2	200732302	200775805	AC097717.1	-	lncRNA	295	same	10380_ID	chr2	200765806	200766100	295	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5431	ENST00000478759.2_2	ENST00000465755.2_3	chr7	77037	81178	AC093627.6	+	lncRNA	chr7	70971	95683	AC093627.1	-	lncRNA	4141	opposite	3229_ID	chr7	77038	81178	4141	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5462	ENST00000481268.2	ENST00000510632.1_1	chr4	2317925	2318233	RN7SL589P	-	misc_RNA	chr4	2297310	2320816	AL158068.2	+	lncRNA	308	opposite	10289_ID	chr4	2317926	2318233	308	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5503	ENST00000484176.2	ENST00000669079.1_1	chr4	141499078	141499374	RN7SL152P	+	misc_RNA	chr4	141498998	141500811	AC108019.2	+	lncRNA	296	same	9979_ID	chr4	141499079	141499374	296	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	2
5518	ENST00000485204.2	ENST00000530249.1_1	chr11	29742945	29743238	RN7SL240P	-	misc_RNA	chr11	29735455	29903261	AC107973.1	+	lncRNA	293	opposite	10048_ID	chr11	29742946	29743238	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5539	ENST00000485805.1_3	ENST00000482609.1_1	chr3	64064036	64073039	LINC00994	-	lncRNA	chr3	64053639	64088807	PRICKLE2-AS1	+	lncRNA	9003	opposite	7587_ID	chr3	64064037	64073039	9003	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5547	ENST00000487179.1_2	ENST00000460955.5_1	chr7	143963793	143966381	CTAGE8	-	protein_coding	chr7	143892413	143977640	ARHGEF35-AS1	+	lncRNA	2588	opposite	6729_ID	chr7	143963794	143966381	2588	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5557	ENST00000487715.2	ENST00000663633.1_3	chr5	73613810	73614107	RN7SL814P	+	misc_RNA	chr5	73407514	73832649	LINC01331	-	lncRNA	297	opposite	10454_ID	chr5	73613811	73614107	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5560	ENST00000488178.2	ENST00000430545.4_6	chr9	17053898	17054200	RN7SL720P	+	misc_RNA	chr9	17018517	17113960	AL162725.2	+	lncRNA	302	same	10382_ID	chr9	17053899	17054200	302	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5635	ENST00000493031.2	ENST00000607862.5_1	chr13	78521627	78521907	RN7SL810P	-	misc_RNA	chr13	78493823	79158297	OBI1-AS1	+	lncRNA	280	opposite	10449_ID	chr13	78521628	78521907	280	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5653	ENST00000494391.2	ENST00000554218.1_3	chr14	58646488	58646779	RN7SL598P	+	misc_RNA	chr14	58605818	58764857	ARMH4	-	processed_transcript	291	opposite	10294_ID	chr14	58646489	58646779	291	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5687	ENST00000497366.1_3	ENST00000478789.5_6	chr7	150076942	150080973	ZNF775-AS1	-	lncRNA	chr7	150065878	150094003	ZNF775	+	protein_coding	4031	opposite	13071_ID	chr7	150076943	150080973	4031	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5691	ENST00000497558.5_1	ENST00000437748.2_3	chr13	45563754	45607737	GPALPP1	+	nonsense_mediated_decay	chr13	45556211	45657260	AL359706.1	-	lncRNA	48141	opposite	7148_ID	chr13	45563755	45607737	43983	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5749	ENST00000501520.1_3	ENST00000635780.1_1	chr16	28296205	28303385	AC138904.1	-	lncRNA	chr16	28270006	28303494	AC138904.3	+	lncRNA	7180	opposite	4197_ID	chr16	28296206	28303385	7180	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
5755	ENST00000502156.1_3	ENST00000558889.5_1	chr15	68126647	68131217	AC009292.1	-	lncRNA	chr15	68125062	68166204	AC009292.2	+	lncRNA	4570	opposite	939_ID	chr15	68126648	68131217	4570	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5772	ENST00000502641.1_1	ENST00000503659.5_3	chr4	2465523	2465851	AL645924.1	+	lncRNA	chr4	2463946	2498739	RNF4	+	protein_coding	328	same	5867_ID	chr4	2465524	2465851	328	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5780	ENST00000503085.1_3	ENST00000515764.2_1	chr4	25866502	25871172	AC133961.1	-	lncRNA	chr4	25863451	25931167	SMIM20	+	processed_transcript	4670	opposite	4121_ID	chr4	25866503	25871172	4670	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5784	ENST00000503320.1_1	ENST00000666304.1_3	chr5	117931882	117963787	LINC02215	+	lncRNA	chr5	117916936	117963873	AC114311.1	-	lncRNA	31905	opposite	7748_ID	chr5	117931883	117963787	31905	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
5813	ENST00000504339.1_3	ENST00000651142.1_3	chr5	24835388	24840692	LINC02239	-	lncRNA	chr5	24772252	24851080	AC106821.2	-	lncRNA	5304	same	7751_ID	chr5	24835389	24840692	5304	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5834	ENST00000504935.1_1	ENST00000653650.1_1	chr5	16617333	16621385	AC022113.1	+	lncRNA	chr5	16616266	16682014	AC024588.1	+	lncRNA	4052	same	1825_ID	chr5	16617334	16621385	4052	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5838	ENST00000505025.2_2	ENST00000513034.3_3	chr4	184908821	184917833	AC074194.1	+	lncRNA	chr4	184718844	184938531	STOX2	+	protein_coding	9012	same	2574_ID	chr4	184908822	184917833	9012	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5842	ENST00000505162.1_1	ENST00000510432.1_3	chr5	147266674	147267267	AC011352.3	+	lncRNA	chr5	147260288	147286053	C5orf46	-	processed_transcript	593	opposite	1194_ID	chr5	147266675	147267267	593	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5882	ENST00000506416.1_1	ENST00000511951.1_3	chr4	139845083	139845386	AC109927.2	-	lncRNA	chr4	139741110	139933800	AC109927.1	-	lncRNA	303	same	3779_ID	chr4	139845084	139845386	303	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5886	ENST00000506504.3_1	ENST00000576461.1_1	chr17	47481442	47482559	AC091180.3	+	lncRNA	chr17	47448101	47554350	AC091180.5	+	lncRNA	1117	same	2993_ID	chr17	47481443	47482559	1117	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5893	ENST00000506612.1_3	ENST00000663633.1_3	chr5	73623819	73630591	LINC01332	-	lncRNA	chr5	73407514	73832649	LINC01331	-	lncRNA	6772	same	7632_ID	chr5	73623820	73630591	6772	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5894	ENST00000506612.1_3	ENST00000669685.1_1	chr5	73623819	73630591	LINC01332	-	lncRNA	chr5	73617157	73637061	LINC01333	+	lncRNA	6772	opposite	7633_ID	chr5	73623820	73630591	6772	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5912	ENST00000507108.5_1	ENST00000652341.2_4	chr4	158493641	158497306	LINC02433	+	lncRNA	chr4	158489882	158745408	AC093817.2	-	lncRNA	3665	opposite	7774_ID	chr4	158493642	158497306	3665	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5915	ENST00000507296.1_1	ENST00000652341.2_4	chr4	158558838	158588196	AC093817.1	+	lncRNA	chr4	158489882	158745408	AC093817.2	-	lncRNA	78897	opposite	3248_ID	chr4	158558839	158588196	29358	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5919	ENST00000507398.1_1	ENST00000377300.3_3	chr5	174413297	174414053	AC008413.2	+	lncRNA	chr5	174346084	174422516	LINC01951	-	lncRNA	756	opposite	727_ID	chr5	174413298	174414053	756	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5924	ENST00000507579.1_1	ENST00000668468.1_3	chr4	39135532	39137228	AC079921.2	+	lncRNA	chr4	39068593	39183878	AC079921.1	-	lncRNA	1696	opposite	2686_ID	chr4	39135533	39137228	1696	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
5936	ENST00000507932.1_3	ENST00000654462.1_1	chr4	14384746	14410702	AC006296.2	-	lncRNA	chr4	14361023	14455249	AC006296.3	+	lncRNA	25956	opposite	452_ID	chr4	14384747	14410702	25956	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5940	ENST00000508010.1_3	ENST00000506068.1_1	chr4	112725573	112730850	AC139718.1	-	lncRNA	chr4	112723956	112761042	AC139718.2	+	lncRNA	5277	opposite	4209_ID	chr4	112725574	112730850	5277	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5942	ENST00000508031.1_3	ENST00000513238.5_3	chr4	75881183	75895572	PARM1-AS1	-	lncRNA	chr4	75858304	75975325	PARM1	+	protein_coding	14389	opposite	9501_ID	chr4	75881184	75895572	14389	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5957	ENST00000508713.1_1	ENST00000509789.2_1	chr5	139579747	139582772	AC011379.1	+	lncRNA	chr5	139554772	139661637	CYSTM1	+	processed_transcript	7486	same	1202_ID	chr5	139579748	139582772	3025	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5960	ENST00000508845.1_3	ENST00000515598.1_3	chr5	145755153	145755782	AC011396.3	-	lncRNA	chr5	145686660	145756526	AC011396.2	-	lncRNA	629	same	1205_ID	chr5	145755154	145755782	629	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5993	ENST00000509950.1_3	ENST00000576461.1_1	chr17	47535222	47539111	LINC02075	-	lncRNA	chr17	47448101	47554350	AC091180.5	+	lncRNA	3889	opposite	7722_ID	chr17	47535223	47539111	3889	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6025	ENST00000511000.2_1	ENST00000657578.1_1	chr5	87988467	87988676	AC008525.2	+	lncRNA	chr5	87971850	88074905	MEF2C-AS2	+	lncRNA	209	same	740_ID	chr5	87988468	87988676	209	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6026	ENST00000511000.2_1	ENST00000666338.1_3	chr5	87988467	87988676	AC008525.2	+	lncRNA	chr5	87987613	87990858	AC008525.1	-	lncRNA	209	opposite	739_ID	chr5	87988468	87988676	209	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
6029	ENST00000511243.2_3	ENST00000546177.1_1	chr11	96180295	96239990	JRKL-AS1	-	lncRNA	chr11	96123152	96240738	JRKL	+	processed_transcript	59695	opposite	7391_ID	chr11	96180296	96239990	59695	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6033	ENST00000511322.1_1	ENST00000576461.1_1	chr17	47452741	47457456	AC091180.4	+	lncRNA	chr17	47448101	47554350	AC091180.5	+	lncRNA	4715	same	2994_ID	chr17	47452742	47457456	4715	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6051	ENST00000511712.1_1	ENST00000503452.5_4	chr5	44753050	44765846	AC093297.1	+	lncRNA	chr5	44745001	44808879	MRPS30-DT	-	lncRNA	12796	opposite	3193_ID	chr5	44753051	44765846	12796	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6072	ENST00000512277.1_3	ENST00000310546.3_2	chr3	140833965	140843024	AC108727.2	-	lncRNA	chr3	140770188	140867453	SPSB4	+	protein_coding	9059	opposite	3746_ID	chr3	140833966	140843024	9059	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6076	ENST00000512300.1_1	ENST00000510432.1_3	chr5	147265648	147266441	AC011352.1	-	lncRNA	chr5	147260288	147286053	C5orf46	-	processed_transcript	793	same	1193_ID	chr5	147265649	147266441	793	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6143	ENST00000514287.1_3	ENST00000302517.8_2	chr5	139028583	139029313	CXXC5-AS1	-	lncRNA	chr5	139027933	139063467	CXXC5	+	protein_coding	730	opposite	6748_ID	chr5	139028584	139029313	730	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6146	ENST00000514401.1_2	ENST00000654462.1_1	chr4	14392062	14395616	AC006296.1	+	lncRNA	chr4	14361023	14455249	AC006296.3	+	lncRNA	3554	same	451_ID	chr4	14392063	14395616	3554	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6154	ENST00000514661.1_1	ENST00000615637.3_5	chr5	72742183	72742811	FOXD1-AS1	+	lncRNA	chr5	72742092	72744602	FOXD1	-	protein_coding	628	opposite	7058_ID	chr5	72742184	72742811	628	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
6177	ENST00000515495.1_3	ENST00000295297.4_2	chr4	15359764	15421656	AC099550.1	-	lncRNA	chr4	15341559	15447789	C1QTNF7	+	protein_coding	61892	opposite	3381_ID	chr4	15359765	15421656	61892	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6222	ENST00000515943.1	ENST00000649946.1_1	chr9	85890855	85891029	RNU4-29P	+	snRNA	chr9	85887194	85891779	AL137847.2	+	lncRNA	174	same	10672_ID	chr9	85890856	85891029	174	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6260	ENST00000516073.1	ENST00000656833.1_1	chr6	115188036	115188140	RNU6-475P	-	snRNA	chr6	115144157	115323444	AL590550.1	+	lncRNA	104	opposite	11267_ID	chr6	115188037	115188140	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6278	ENST00000516126.1	ENST00000457407.2_2	chr2	191417989	191418206	RN7SKP179	-	misc_RNA	chr2	191399580	191434502	AC108047.1	+	lncRNA	217	opposite	9806_ID	chr2	191417990	191418206	217	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6281	ENST00000516142.1	ENST00000503349.1_1	chr5	86398419	86398663	RN7SKP34	-	misc_RNA	chr5	86263137	86433529	AC109492.1	+	lncRNA	244	opposite	9890_ID	chr5	86398420	86398663	244	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6283	ENST00000516149.1	ENST00000476882.1_1	chr1	78554671	78554767	RNU6-1102P	-	snRNA	chr1	78445225	78558488	GIPC2	+	processed_transcript	96	opposite	10831_ID	chr1	78554672	78554767	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6316	ENST00000516223.1	ENST00000426017.1_1	chr1	52004296	52004401	RNU6-1281P	-	snRNA	chr1	51984054	52027301	EPS15-AS1	+	lncRNA	105	opposite	10976_ID	chr1	52004297	52004401	105	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6338	ENST00000516288.1	ENST00000585258.1_3	chr18	74512619	74512730	RNU6-346P	-	snRNA	chr18	74506687	74534251	ZNF236-DT	-	lncRNA	111	same	11172_ID	chr18	74512620	74512730	111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6353	ENST00000516339.1	ENST00000450023.5_1	chr2	201944564	201944667	RNU6-1206P	+	snRNA	chr2	201936155	201950236	NDUFB3	+	protein_coding	103	same	10911_ID	chr2	201944565	201944667	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6380	ENST00000516414.1	ENST00000433507.1_1	chr2	130866776	130866883	RNU6-1049P	-	snRNA	chr2	130865256	130867314	POTEF-AS1	+	lncRNA	107	opposite	10794_ID	chr2	130866777	130866883	107	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
6389	ENST00000516454.1	ENST00000556646.1_3	chr14	70962823	70962927	RNU6-659P	+	snRNA	chr14	70892528	71014181	AL357153.2	-	lncRNA	104	opposite	11415_ID	chr14	70962824	70962927	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6392	ENST00000516462.1	ENST00000564814.1_1	chr16	58418345	58418446	RNU6-1110P	-	snRNA	chr16	58329300	58426478	GINS3	+	processed_transcript	101	opposite	10836_ID	chr16	58418346	58418446	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6407	ENST00000516503.1	ENST00000556542.2_2	chr14	36700760	36700980	RN7SKP21	-	misc_RNA	chr14	36682405	36704814	AL162511.1	+	lncRNA	220	opposite	9823_ID	chr14	36700761	36700980	220	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6408	ENST00000516512.1	ENST00000366278.2_1	chr2	86047557	86047735	RN7SKP83	-	misc_RNA	chr2	86042252	86052514	AC105053.1	+	lncRNA	178	opposite	9926_ID	chr2	86047558	86047735	178	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6435	ENST00000516581.1	ENST00000536397.1_1	chr12	31747026	31747140	RNU5F-4P	-	snRNA	chr12	31742856	31768285	DENND5B-AS1	+	lncRNA	114	opposite	10754_ID	chr12	31747027	31747140	114	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6437	ENST00000516585.1	ENST00000435333.5_3	chr1	247770427	247770503	RNU6-691P	-	snRNA	chr1	247728940	247804156	AL606804.1	-	lncRNA	76	same	11435_ID	chr1	247770428	247770503	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6444	ENST00000516601.1	ENST00000481405.1_1	chr3	45075965	45076080	RNU5B-3P	-	snRNA	chr3	45017767	45077558	EXOSC7	+	processed_transcript	115	opposite	10742_ID	chr3	45075966	45076080	115	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6450	ENST00000516614.1	ENST00000435148.1_4	chr7	68866187	68866289	RNU6-229P	-	snRNA	chr7	68689682	68895909	AC092100.1	-	lncRNA	102	same	11086_ID	chr7	68866188	68866289	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6467	ENST00000516672.1	ENST00000667310.1_3	chr14	95999691	95999966	SCARNA13	-	snoRNA	chr14	95988294	96000955	SNHG10	-	lncRNA	275	same	11992_ID	chr14	95999692	95999966	275	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6491	ENST00000516747.1	ENST00000651822.1_3	chr11	121875062	121875159	RNU6-256P	+	snRNA	chr11	121850278	121896645	AP001924.1	-	lncRNA	97	opposite	11106_ID	chr11	121875063	121875159	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6496	ENST00000516759.1	ENST00000533659.1_1	chr11	9865361	9865423	RNU7-28P	-	snRNA	chr11	9860689	9950810	AC011092.2	+	lncRNA	62	opposite	11771_ID	chr11	9865362	9865423	62	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6502	ENST00000516775.1	ENST00000662662.1_3	chr12	32068569	32068641	AC023050.1	-	miRNA	chr12	32029902	32112250	LINC02422	-	lncRNA	72	same	1929_ID	chr12	32068570	32068641	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6517	ENST00000516820.1	ENST00000371497.10_4	chr20	51679155	51679240	AL050316.1	+	miRNA	chr20	51588896	52111869	TSHZ2	+	protein_coding	85	same	4650_ID	chr20	51679156	51679240	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6544	ENST00000516906.1	ENST00000569304.1_1	chr15	66135821	66135896	RNU6-265P	+	snRNA	chr15	66018391	66180261	RAB11A	+	processed_transcript	75	same	11113_ID	chr15	66135822	66135896	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6563	ENST00000516958.1	ENST00000338305.7_4	chr6	40375591	40375694	RNU6-250P	+	snRNA	chr6	40359329	40555103	LRFN2	-	protein_coding	103	opposite	11099_ID	chr6	40375592	40375694	103	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6571	ENST00000516973.1	ENST00000554218.1_3	chr14	58759010	58759106	RNU6-341P	-	snRNA	chr14	58605818	58764857	ARMH4	-	processed_transcript	96	same	11166_ID	chr14	58759011	58759106	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6595	ENST00000517041.1	ENST00000625763.1_1	chr12	88975415	88975573	RNU1-117P	+	snRNA	chr12	88974307	88991995	AC024941.2	+	lncRNA	158	same	10556_ID	chr12	88975416	88975573	158	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6608	ENST00000517072.1	ENST00000503650.1_3	chr5	104115988	104116090	RNU6-334P	-	snRNA	chr5	103819904	104728671	AC099520.1	-	lncRNA	102	same	11160_ID	chr5	104115989	104116090	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6611	ENST00000517077.1	ENST00000426426.3_2	chr12	120068894	120069191	RN7SKP197	-	misc_RNA	chr12	120031578	120080880	TMEM233	+	protein_coding	297	opposite	9815_ID	chr12	120068895	120069191	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6617	ENST00000517084.1	ENST00000659845.1_1	chr11	59326272	59326334	RNU7-58P	+	snRNA	chr11	59313074	59326355	AP003778.1	+	lncRNA	62	same	11793_ID	chr11	59326273	59326334	62	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
6656	ENST00000517197.1	ENST00000482518.6_3	chr2	230101055	230101325	RN7SKP283	-	misc_RNA	chr2	229715241	230109776	PID1	-	processed_transcript	270	same	9877_ID	chr2	230101056	230101325	270	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6679	ENST00000517239.1	ENST00000594624.6_1	chr19	42977026	42977161	RNU4-60P	+	snRNA	chr19	42901325	43156507	LIPE-AS1	+	lncRNA	135	same	10698_ID	chr19	42977027	42977161	135	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6689	ENST00000517257.1	ENST00000648887.1_3	chr10	115871172	115871276	RNU6-709P	+	snRNA	chr10	115869614	115878459	AC022023.2	-	lncRNA	104	opposite	11444_ID	chr10	115871173	115871276	104	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
6711	ENST00000517380.1_3	ENST00000517695.1_1	chr8	134787793	134789595	AC090821.2	-	lncRNA	chr8	134783651	134826780	AC133634.1	+	lncRNA	1802	opposite	2939_ID	chr8	134787794	134789595	1802	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6716	ENST00000517474.1_3	ENST00000394243.5_1	chr5	149987989	149994916	AC011383.1	-	lncRNA	chr5	149980641	150033794	SYNPO	+	protein_coding	6927	opposite	1203_ID	chr5	149987990	149994916	6927	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6717	ENST00000517495.1_3	ENST00000220772.8_4	chr8	41132633	41134522	AC104393.1	-	lncRNA	chr8	41119480	41166992	SFRP1	-	protein_coding	1889	same	3529_ID	chr8	41132634	41134522	1889	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6740	ENST00000518156.3_2	ENST00000430027.3_3	chr7	96634864	96640352	DLX6	+	protein_coding	chr7	96584452	96643377	DLX6-AS1	-	lncRNA	5488	opposite	6819_ID	chr7	96634865	96640352	5488	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6749	ENST00000518418.1_3	ENST00000636261.1_3	chr5	158875563	158893284	LINC01845	-	lncRNA	chr5	158848221	158984695	AC008691.1	+	lncRNA	17736	opposite	7689_ID	chr5	158875564	158893284	17721	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6762	ENST00000518590.1_3	ENST00000668387.1_1	chr8	23350521	23351711	AC104561.3	-	lncRNA	chr8	23349682	23352410	AC104561.4	+	lncRNA	1190	opposite	3549_ID	chr8	23350522	23351711	1190	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
6774	ENST00000518934.1_1	ENST00000520426.1_3	chr8	58658707	58662758	AC104051.2	+	lncRNA	chr8	58506724	58717588	AC104051.1	-	lncRNA	4051	opposite	3501_ID	chr8	58658708	58662758	4051	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6786	ENST00000519427.1_1	ENST00000523207.2_2	chr8	73644279	73664078	AC013562.1	+	lncRNA	chr8	73449459	73850584	KCNB2	+	protein_coding	19799	same	1454_ID	chr8	73644280	73664078	19799	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6788	ENST00000519603.1_3	ENST00000520163.1_1	chr5	178804531	178805762	AC109479.1	-	lncRNA	chr5	178804505	178805866	AC109479.3	+	lncRNA	1231	opposite	3770_ID	chr5	178804532	178805762	1231	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
6794	ENST00000519782.1_3	ENST00000336138.4_2	chr8	143808700	143809108	AC108002.1	-	lncRNA	chr8	143808640	143818345	THEM6	+	protein_coding	408	opposite	3711_ID	chr8	143808701	143809108	408	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	2
6802	ENST00000519935.1_1	ENST00000470747.4_3	chr7	27208517	27211534	HOXA10-AS	+	lncRNA	chr7	27203153	27219632	AC004080.3	-	protein_coding	3297	opposite	7251_ID	chr7	27208518	27211534	3017	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6807	ENST00000520162.1_1	ENST00000631520.1_4	chr8	2376123	2379308	AC245187.1	+	lncRNA	chr8	2375023	2386837	AC245187.2	-	lncRNA	3185	opposite	4310_ID	chr8	2376124	2379308	3185	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6811	ENST00000520323.1_1	ENST00000521204.1_1	chr5	158654722	158672135	LINC01932	+	lncRNA	chr5	158636928	158675804	AC134043.2	+	lncRNA	17413	same	7704_ID	chr5	158654723	158672135	17413	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6812	ENST00000520375.1_4	ENST00000523874.1_1	chr8	23583843	23600555	AC012574.2	-	lncRNA	chr8	23564653	23647000	AC012574.1	+	lncRNA	28977	opposite	1412_ID	chr8	23583844	23600555	16712	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6826	ENST00000520840.5_3	ENST00000501897.1_1	chr8	22928889	22932001	AC107959.3	-	lncRNA	chr8	22925741	22941132	AC107959.2	+	lncRNA	3112	opposite	3707_ID	chr8	22928890	22932001	3112	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6846	ENST00000521478.1_3	ENST00000518848.5_1	chr7	27185280	27190222	HOXA6	-	processed_transcript	chr7	27169595	27192195	HOXA-AS3	+	lncRNA	5208	opposite	7260_ID	chr7	27185281	27190222	4942	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6856	ENST00000521793.1_1	ENST00000518973.1_3	chr8	139075510	139085483	AC079015.1	+	lncRNA	chr8	138821686	139095813	AC046195.1	-	lncRNA	9973	opposite	2616_ID	chr8	139075511	139085483	9973	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6866	ENST00000522186.1_3	ENST00000327381.7_2	chr8	56047762	56054918	AC022679.2	-	lncRNA	chr8	56014587	56454613	XKR4	+	protein_coding	7156	opposite	1898_ID	chr8	56047763	56054918	7156	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6874	ENST00000522464.1_3	ENST00000503650.1_3	chr5	104308987	104582065	AC091987.1	-	lncRNA	chr5	103819904	104728671	AC099520.1	-	lncRNA	328873	same	3028_ID	chr5	104308988	104582065	273078	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6876	ENST00000522498.1_1	ENST00000668834.1_1	chr8	75015750	75018979	AC087672.1	+	lncRNA	chr8	75005779	75120705	AC087627.1	+	lncRNA	3229	same	2841_ID	chr8	75015751	75018979	3229	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6890	ENST00000522918.1_3	ENST00000327381.7_2	chr8	56429798	56433536	AC090200.1	-	lncRNA	chr8	56014587	56454613	XKR4	+	protein_coding	3738	opposite	2880_ID	chr8	56429799	56433536	3738	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6903	ENST00000523317.1_3	ENST00000661266.1_3	chr8	135224107	135332690	AC105180.1	-	lncRNA	chr8	135202625	135402730	AC105180.2	-	lncRNA	108583	same	3600_ID	chr8	135224108	135332690	108583	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6919	ENST00000523745.1_1	ENST00000503650.1_3	chr5	104109341	104135473	AC099520.2	+	lncRNA	chr5	103819904	104728671	AC099520.1	-	lncRNA	26132	opposite	3375_ID	chr5	104109342	104135473	26132	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6920	ENST00000523775.1_3	ENST00000438105.2_1	chr8	104240652	104241542	AC025370.1	-	lncRNA	chr8	104152940	104242533	BAALC	+	protein_coding	890	opposite	2081_ID	chr8	104240653	104241542	890	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	2
6925	ENST00000523881.1_3	ENST00000523207.2_2	chr8	73787093	73793975	AC090735.1	-	lncRNA	chr8	73449459	73850584	KCNB2	+	protein_coding	6882	opposite	2933_ID	chr8	73787094	73793975	6882	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
6934	ENST00000524269.1_3	ENST00000522961.1_4	chr8	77488785	77491580	AC013509.1	-	lncRNA	chr8	77403434	77595391	ZFHX4-AS1	-	lncRNA	2795	same	1449_ID	chr8	77488786	77491580	2795	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6977	ENST00000526411.1_3	ENST00000527748.5_1	chr1	110082527	110086459	AL355310.3	-	lncRNA	chr1	110082493	110089882	GPR61	+	protein_coding	3932	opposite	5328_ID	chr1	110082528	110086459	3932	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
6984	ENST00000526648.2_3	ENST00000416569.3_5	chr8	10980890	10983574	AF131215.4	-	lncRNA	chr8	10753554	11059342	XKR6	-	protein_coding	2684	same	4395_ID	chr8	10980891	10983574	2684	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
6986	ENST00000526730.1_1	ENST00000533144.1_5	chr11	77733978	77734767	AP003032.1	+	lncRNA	chr11	77727638	77757237	KCTD14	-	protein_coding	789	opposite	6229_ID	chr11	77733979	77734767	789	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7042	ENST00000528446.1_2	ENST00000650300.1_3	chr10	124214168	124216868	ARMS2	+	protein_coding	chr10	124195439	124220899	BX842242.1	-	lncRNA	2700	opposite	6344_ID	chr10	124214169	124216868	2700	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7051	ENST00000528660.1_3	ENST00000533902.2_1	chr11	86603255	86633146	AP001528.1	-	lncRNA	chr11	86511562	86663952	PRSS23	+	protein_coding	32824	opposite	6142_ID	chr11	86603256	86633146	29891	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7052	ENST00000528717.1_1	ENST00000525577.5_3	chr11	102323649	102332739	AP001830.1	+	lncRNA	chr11	102272655	102341115	TMEM123	-	processed_transcript	9090	opposite	6164_ID	chr11	102323650	102332739	9090	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7109	ENST00000530810.1_2	ENST00000529961.1_3	chr11	6190559	6191638	OR52B2	-	protein_coding	chr11	6129364	6206806	AC022762.1	-	lncRNA	1079	same	9436_ID	chr11	6190560	6191638	1079	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7133	ENST00000531549.1_1	ENST00000416569.3_5	chr8	10994407	10996117	AF131215.2	-	lncRNA	chr8	10753554	11059342	XKR6	-	protein_coding	1710	same	4393_ID	chr8	10994408	10996117	1710	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7147	ENST00000531918.1_3	ENST00000534674.5_1	chr11	58684487	58696162	AP001652.1	-	lncRNA	chr11	58672870	58715410	GLYATL1	+	processed_transcript	11675	opposite	6158_ID	chr11	58684488	58696162	11675	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7160	ENST00000532453.1_3	ENST00000416569.3_5	chr8	10920156	10924599	AF131215.3	-	lncRNA	chr8	10753554	11059342	XKR6	-	protein_coding	4443	same	4394_ID	chr8	10920157	10924599	4443	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7183	ENST00000533372.1_3	ENST00000551063.5_1	chr12	49976668	49999410	FAM186B	-	nonsense_mediated_decay	chr12	49962154	50024408	PRPF40B	+	protein_coding	22755	opposite	6967_ID	chr12	49976669	49999410	22742	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7205	ENST00000533984.1_1	ENST00000533755.5_1	chr14	21492330	21497404	AL161668.4	+	lncRNA	chr14	21492267	21499167	TPPP2	+	retained_intron	5100	same	5160_ID	chr14	21492331	21497404	5074	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
7214	ENST00000534604.1_1	ENST00000528445.1_3	chr11	45420997	45422078	AC018716.1	+	lncRNA	chr11	45408765	45535352	AC103855.3	-	lncRNA	1081	opposite	1655_ID	chr11	45420998	45422078	1081	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7215	ENST00000534604.1_1	ENST00000669753.1_3	chr11	45420997	45422078	AC018716.1	+	lncRNA	chr11	45419139	45434295	AC018716.2	-	lncRNA	1081	opposite	1654_ID	chr11	45420998	45422078	1081	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
7269	ENST00000538349.5_3	ENST00000545829.1_3	chr12	11552314	11639612	AC078950.1	-	lncRNA	chr12	11546905	11653975	PRB2	-	processed_transcript	87328	same	2609_ID	chr12	11552315	11639612	87298	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7270	ENST00000538405.1_3	ENST00000676244.1_1	chr12	119611869	119614289	AC084880.4	-	lncRNA	chr12	119611730	119631748	HSPB8	+	processed_transcript	2420	opposite	2777_ID	chr12	119611870	119614289	2420	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7279	ENST00000538927.1_1	ENST00000501954.2_3	chr12	34175402	34182629	ALG10	+	protein_coding	chr12	34175215	34199352	AC046130.1	-	lncRNA	7227	opposite	5928_ID	chr12	34175403	34182629	7227	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
7284	ENST00000539209.1_1	ENST00000659569.1_3	chr12	131851204	131855604	AC140118.1	+	lncRNA	chr12	131835388	131856266	AC140118.2	-	lncRNA	4400	opposite	4217_ID	chr12	131851205	131855604	4400	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7297	ENST00000539627.5_1	ENST00000604424.1_1	chr19	41856815	41889988	TMEM91	+	protein_coding	chr19	41856757	41916758	AC011462.1	+	processed_transcript	33173	same	12743_ID	chr19	41856816	41889988	33173	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	2
7309	ENST00000540399.1_3	ENST00000669683.1_1	chr12	17662286	17742926	LINC02378	-	lncRNA	chr12	17632379	17849589	AC048352.1	+	lncRNA	80697	opposite	7766_ID	chr12	17662287	17742926	80640	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7332	ENST00000542197.1_3	ENST00000448803.6_1	chr15	85154919	85158200	AC048382.1	-	lncRNA	chr15	85144235	85166947	ZSCAN2	+	protein_coding	3281	opposite	2314_ID	chr15	85154920	85158200	3281	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7355	ENST00000543624.1_1	ENST00000306960.4_5	chr11	62677017	62685833	AP000438.1	+	lncRNA	chr11	62676150	62688835	CHRM1	-	protein_coding	8816	opposite	5987_ID	chr11	62677018	62685833	8816	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	2
7384	ENST00000545158.1_1	ENST00000542078.2_2	chr12	13115233	13116473	AC007688.3	+	lncRNA	chr12	13080667	13137015	GPRC5D-AS1	+	lncRNA	1240	same	639_ID	chr12	13115234	13116473	1240	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7392	ENST00000545706.1_3	ENST00000538029.1_1	chr12	9139770	9149162	AC006581.1	-	lncRNA	chr12	9102720	9162659	KLRG1	+	processed_transcript	9392	opposite	486_ID	chr12	9139771	9149162	9392	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7422	ENST00000546852.5_3	ENST00000553177.6_4	chr12	111389486	111395616	AC002351.1	-	lncRNA	chr12	111374381	111396897	LINC01405	+	lncRNA	6138	opposite	45_ID	chr12	111389487	111395616	6130	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7445	ENST00000547569.1_3	ENST00000552230.5_2	chr12	78820605	78836732	AC130415.1	-	lncRNA	chr12	78746298	78876799	AC128707.1	+	lncRNA	16127	opposite	4066_ID	chr12	78820606	78836732	16127	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7450	ENST00000547721.1_1	ENST00000266671.9_4	chr12	76426437	76427677	AC011611.4	+	lncRNA	chr12	76419226	76427712	PHLDA1	-	protein_coding	1240	opposite	1273_ID	chr12	76426438	76427677	1240	*	+	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	2
7455	ENST00000548065.7_5	ENST00000552933.2_1	chr12	49396056	49412559	PRKAG1	-	protein_coding	chr12	49392149	49413018	DDN-AS1	+	lncRNA	16534	opposite	9632_ID	chr12	49396057	49412559	16503	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
7492	ENST00000549516.1_1	ENST00000421952.3_4	chr12	49388932	49390117	AC011603.3	+	lncRNA	chr12	49388931	49393158	DDN	-	protein_coding	1185	opposite	1270_ID	chr12	49388933	49390117	1185	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
7493	ENST00000549659.1_1	ENST00000377142.5_4	chr20	21492084	21492947	NKX2-2-AS1	+	lncRNA	chr20	21491654	21494702	NKX2-2	-	protein_coding	863	opposite	9269_ID	chr20	21492085	21492947	863	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
7511	ENST00000550644.1_3	ENST00000551063.5_1	chr12	49970622	49971288	AC020612.3	-	lncRNA	chr12	49962154	50024408	PRPF40B	+	protein_coding	666	opposite	1712_ID	chr12	49970623	49971288	666	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7533	ENST00000551918.1_3	ENST00000549066.1_1	chr12	102317187	102318497	AC084398.2	-	lncRNA	chr12	102302091	102405908	DRAM1	+	protein_coding	1310	opposite	2748_ID	chr12	102317188	102318497	1310	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7539	ENST00000552324.1_1	ENST00000549419.6_4	chr12	70574117	70595784	LINC02821	+	lncRNA	chr12	70295697	70637146	PRANCR	-	lncRNA	21667	opposite	7802_ID	chr12	70574118	70595784	21667	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7541	ENST00000552367.1_1	ENST00000266671.9_4	chr12	76424273	76425158	AC011611.3	+	lncRNA	chr12	76419226	76427712	PHLDA1	-	protein_coding	885	opposite	1272_ID	chr12	76424274	76425158	885	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	1	2
7543	ENST00000552415.1_3	ENST00000551505.4_4	chr12	107108701	107126844	AC079385.3	-	lncRNA	chr12	106889735	107168696	AC079385.1	-	lncRNA	18143	same	2658_ID	chr12	107108702	107126844	18143	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7546	ENST00000552486.1_3	ENST00000552828.5_3	chr12	106639390	106640734	AC079174.1	-	lncRNA	chr12	106633671	106698029	CKAP4	-	processed_transcript	1344	same	2624_ID	chr12	106639391	106640734	1344	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7549	ENST00000552634.1_3	ENST00000667191.1_1	chr12	46778015	46780774	AC025031.1	-	lncRNA	chr12	46777434	47270567	AC008014.1	+	lncRNA	2759	opposite	2044_ID	chr12	46778016	46780774	2759	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7573	ENST00000553410.1_1	ENST00000555947.6_2	chr15	92076120	92078325	AC107958.3	+	lncRNA	chr15	91951937	92149103	CRAT37	+	lncRNA	2205	same	3706_ID	chr15	92076121	92078325	2205	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7577	ENST00000553613.1_1	ENST00000647580.1_3	chr14	77425980	77432145	LINC01629	+	lncRNA	chr14	77424440	77466952	AC007686.4	-	lncRNA	6165	opposite	7663_ID	chr14	77425981	77432145	6165	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
7584	ENST00000553732.1_1	ENST00000555677.5_1	chr14	76437266	76437930	TGFB3-AS1	+	lncRNA	chr14	76368478	76488974	IFT43	+	retained_intron	664	same	12672_ID	chr14	76437267	76437930	664	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7588	ENST00000553909.1_1	ENST00000555835.3_3	chr14	21152745	21168735	AL163636.1	+	protein_coding	chr14	21152718	21169375	RNASE4	+	protein_coding	15990	same	5229_ID	chr14	21152746	21168735	15990	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	2
7590	ENST00000553983.1_1	ENST00000394942.2_4	chr14	64065591	64065966	AL136038.2	+	lncRNA	chr14	64063756	64108579	WDR89	-	protein_coding	375	opposite	4887_ID	chr14	64065592	64065966	375	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
7623	ENST00000554769.1_3	ENST00000542454.2_4	chr14	96699767	96700438	AL355102.5	-	lncRNA	chr14	96671015	96710503	BDKRB2	+	protein_coding	671	opposite	5320_ID	chr14	96699768	96700438	671	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7636	ENST00000555383.1_1	ENST00000542454.2_4	chr14	96677196	96681155	AL355102.1	+	lncRNA	chr14	96671015	96710503	BDKRB2	+	protein_coding	3959	same	5317_ID	chr14	96677197	96681155	3959	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7681	ENST00000556657.1_3	ENST00000298292.13_4	chr14	50096008	50096608	AL139099.2	-	lncRNA	chr14	50091891	50101962	DNAAF2	-	protein_coding	600	same	5007_ID	chr14	50096009	50096608	600	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7682	ENST00000556674.2_3	ENST00000555677.5_1	chr14	76424458	76449354	TGFB3	-	protein_coding	chr14	76368478	76488974	IFT43	+	retained_intron	24915	opposite	12670_ID	chr14	76424459	76449354	24896	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7696	ENST00000557072.1_1	ENST00000555776.1_4	chr14	98602410	98605579	LINC02295	+	lncRNA	chr14	98534576	98671480	AL163932.1	-	lncRNA	3169	opposite	7759_ID	chr14	98602411	98605579	3169	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7703	ENST00000557322.1_1	ENST00000554218.1_3	chr14	58731379	58736399	AL132989.1	+	lncRNA	chr14	58605818	58764857	ARMH4	-	processed_transcript	5020	opposite	4820_ID	chr14	58731380	58736399	5020	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7720	ENST00000557800.1_3	ENST00000299213.10_4	chr15	71141221	71142109	AC009269.4	-	lncRNA	chr15	71121468	71146496	LARP6	-	protein_coding	888	same	936_ID	chr15	71141222	71142109	888	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7739	ENST00000558246.1_3	ENST00000664133.1_1	chr15	96936374	96948419	AC087477.5	-	lncRNA	chr15	96897575	96948465	AC087477.2	+	lncRNA	12045	opposite	2823_ID	chr15	96936375	96948419	12045	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
7749	ENST00000558370.1_1	ENST00000662551.1_1	chr15	48236240	48241706	AC092078.1	+	lncRNA	chr15	48104925	48342697	AC092078.2	+	lncRNA	5466	same	3041_ID	chr15	48236241	48241706	5466	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7750	ENST00000558372.1_3	ENST00000499624.3_1	chr15	50651646	50652391	AC022087.1	-	lncRNA	chr15	50647663	50664399	GABPB1-AS1	+	lncRNA	745	opposite	1823_ID	chr15	50651647	50652391	745	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
7775	ENST00000558938.1_3	ENST00000559909.1_1	chr15	51356805	51361783	AC073964.1	-	lncRNA	chr15	51329684	51586109	MIR4713HG	+	lncRNA	4978	opposite	2561_ID	chr15	51356806	51361783	4978	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7786	ENST00000559171.1_1	ENST00000561028.6_4	chr14	24569357	24579807	PCK2	+	protein_coding	chr14	24547870	24584158	NRL	-	protein_coding	16546	opposite	9514_ID	chr14	24569358	24579807	10450	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7817	ENST00000559899.1_3	ENST00000561100.2_5	chr15	40105423	40107630	AC023908.1	-	lncRNA	chr15	40091208	40212467	GPR176	-	protein_coding	2207	same	1987_ID	chr15	40105424	40107630	2207	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7821	ENST00000560011.1_3	ENST00000559909.1_1	chr15	51571123	51572212	AC020891.3	-	lncRNA	chr15	51329684	51586109	MIR4713HG	+	lncRNA	1089	opposite	1740_ID	chr15	51571124	51572212	1089	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7857	ENST00000560751.1_3	ENST00000649869.1_1	chr16	11361604	11363390	TNP2	-	protein_coding	chr16	11343483	11475519	RMI2	+	processed_transcript	1786	opposite	12755_ID	chr16	11361605	11363390	1786	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7858	ENST00000560865.1_1	ENST00000522468.1_1	chr8	28913451	28914202	AC108449.2	+	lncRNA	chr8	28908534	28922281	HMBOX1	+	nonsense_mediated_decay	751	same	3732_ID	chr8	28913452	28914202	751	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7870	ENST00000561207.1_1	ENST00000560802.1_1	chr15	52325903	52327822	AC090970.1	+	lncRNA	chr15	52244302	52338262	MAPK6	+	processed_transcript	1919	same	2958_ID	chr15	52325904	52327822	1919	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7873	ENST00000561318.1_3	ENST00000560802.1_1	chr15	52303195	52311292	MAPK6-DT	-	lncRNA	chr15	52244302	52338262	MAPK6	+	processed_transcript	8097	opposite	7917_ID	chr15	52303196	52311292	8097	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
7880	ENST00000561544.1_1	ENST00000333503.8_4	chr16	2261997	2262864	AC009065.7	+	lncRNA	chr16	2261593	2264841	PGP	-	protein_coding	867	opposite	856_ID	chr16	2261998	2262864	867	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
7889	ENST00000561669.1_1	ENST00000641277.1_3	chr16	74316312	74321417	AC009120.4	+	lncRNA	chr16	74050328	74330431	AC138627.1	-	lncRNA	5105	opposite	885_ID	chr16	74316313	74321417	5105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7909	ENST00000562143.1_1	ENST00000659604.1_3	chr8	9907994	9911764	AC034111.1	-	lncRNA	chr8	9841513	9912551	AC034111.2	-	lncRNA	3770	same	2250_ID	chr8	9907995	9911764	3770	*	-	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7945	ENST00000562822.5_1	ENST00000663751.1_3	chr16	56143448	56170655	AC007495.1	+	lncRNA	chr16	56025415	56195996	AC040168.1	-	lncRNA	27464	opposite	581_ID	chr16	56143449	56170655	27207	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7954	ENST00000562873.1_1	ENST00000566092.1_1	chr16	87249520	87250058	AC136285.2	+	lncRNA	chr16	87245727	87260036	AC136285.1	+	lncRNA	538	same	4148_ID	chr16	87249521	87250058	538	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8022	ENST00000564211.1_1	ENST00000558616.1_3	chr15	40074771	40077818	AC023908.3	+	lncRNA	chr15	40062759	40093534	AC023908.2	-	lncRNA	3047	opposite	1988_ID	chr15	40074772	40077818	3047	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8023	ENST00000564222.1_1	ENST00000655430.1_3	chr16	49204462	49205697	AC044798.2	+	lncRNA	chr16	49106453	49309490	AC044798.3	-	lncRNA	1235	opposite	2301_ID	chr16	49204463	49205697	1235	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8032	ENST00000564455.1_1	ENST00000565313.1_3	chr16	74347234	74349532	AC009120.3	+	lncRNA	chr16	74339153	74366511	AC009120.2	-	lncRNA	2298	opposite	884_ID	chr16	74347235	74349532	2298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8063	ENST00000565085.1_1	ENST00000493231.5_1	chr16	19326485	19327848	AC130456.1	+	lncRNA	chr16	19297060	19333467	CLEC19A	+	protein_coding	1363	same	4067_ID	chr16	19326486	19327848	1363	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8065	ENST00000565127.1_1	ENST00000586905.3_1	chr18	45027542	45084754	AC102797.1	+	lncRNA	chr18	44812095	45120921	MIR4527HG	+	lncRNA	57212	same	3447_ID	chr18	45027543	45084754	57212	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8067	ENST00000565146.1_1	ENST00000655430.1_3	chr16	49193418	49195934	AC044798.1	+	lncRNA	chr16	49106453	49309490	AC044798.3	-	lncRNA	2516	opposite	2300_ID	chr16	49193419	49195934	2516	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8095	ENST00000565771.1_3	ENST00000565153.2_2	chr16	52641673	52642070	AC026462.2	-	lncRNA	chr16	52640933	52647858	AC026462.3	+	lncRNA	397	opposite	2149_ID	chr16	52641674	52642070	397	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8098	ENST00000565802.1_1	ENST00000666887.1_3	chr16	19077312	19078016	AC099518.2	+	lncRNA	chr16	19073465	19078754	AC099518.4	-	lncRNA	704	opposite	3373_ID	chr16	19077313	19078016	704	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8104	ENST00000565882.1_1	ENST00000653047.1_1	chr9	132242883	132244817	AL353803.4	-	lncRNA	chr9	132239224	132266553	LINC00963	+	lncRNA	1934	opposite	5268_ID	chr9	132242884	132244817	1934	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8113	ENST00000566019.1_3	ENST00000564814.1_1	chr16	58416892	58417702	AC009118.1	-	lncRNA	chr16	58329300	58426478	GINS3	+	processed_transcript	810	opposite	881_ID	chr16	58416893	58417702	810	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8122	ENST00000566241.1	ENST00000670989.1_3	chrX	140267419	140267773	RP3-507I15.2	-	sense_overlapping	chrX	140205783	140271283	LDOC1	-	processed_transcript	354	same	11941_ID	chrX	140267420	140267773	354	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8146	ENST00000566798.2_1	ENST00000664021.1_1	chr16	87100310	87103358	AC106745.1	+	lncRNA	chr16	87093034	87103711	LINC02181	+	lncRNA	3048	same	3643_ID	chr16	87100311	87103358	3048	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8161	ENST00000567093.1_1	ENST00000637419.1_3	chr16	85625871	85629326	AC092127.1	+	lncRNA	chr16	85203130	85667738	GSE1	+	protein_coding	3455	same	3058_ID	chr16	85625872	85629326	3455	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8184	ENST00000567396.1_3	ENST00000569304.1_1	chr15	66058797	66059736	AC011939.2	-	lncRNA	chr15	66018391	66180261	RAB11A	+	processed_transcript	939	opposite	1313_ID	chr15	66058798	66059736	939	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8197	ENST00000567905.1_1	ENST00000586572.1_7	chr19	2727740	2729325	AC006538.1	-	lncRNA	chr19	2717766	2740046	AC006538.2	-	protein_coding	1585	same	476_ID	chr19	2727741	2729325	1585	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8202	ENST00000567967.1_1	ENST00000658904.1_1	chr13	112737862	112739785	AL356961.1	+	lncRNA	chr13	112711329	112762325	SOX1-OT	+	lncRNA	1923	same	5404_ID	chr13	112737863	112739785	1923	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8230	ENST00000568430.1_3	ENST00000379486.6_2	chr16	66613885	66614619	AC010542.1	-	lncRNA	chr16	66613350	66622178	CMTM2	+	protein_coding	734	opposite	1101_ID	chr16	66613886	66614619	734	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8239	ENST00000568587.1_3	ENST00000665557.1_1	chr16	88225091	88227273	AC134312.6	-	lncRNA	chr16	88220210	88228808	LINC02182	+	lncRNA	2182	opposite	4124_ID	chr16	88225092	88227273	2182	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8242	ENST00000568659.1_3	ENST00000563811.1_1	chr16	65635003	65635601	AC092138.1	-	lncRNA	chr16	65614570	65680850	AC092138.2	+	lncRNA	598	opposite	3060_ID	chr16	65635004	65635601	598	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8243	ENST00000568708.1_1	ENST00000300849.5_5	chr16	31076815	31080567	AC135050.4	+	lncRNA	chr16	31072167	31085561	ZNF668	-	protein_coding	3752	opposite	4133_ID	chr16	31076816	31080567	3752	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8284	ENST00000569986.1_3	ENST00000641266.1_1	chr16	50890524	50913189	AC025810.1	-	lncRNA	chr16	50873927	50934974	LINC02128	+	lncRNA	22665	opposite	2107_ID	chr16	50890525	50913189	22665	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8288	ENST00000570060.1_1	ENST00000251020.9_6	chr16	51183149	51183730	AC009166.1	+	lncRNA	chr16	51169892	51185181	SALL1	-	protein_coding	581	opposite	917_ID	chr16	51183150	51183730	581	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8314	ENST00000570924.1_1	ENST00000572145.1_3	chr17	1327766	1329657	AC032044.1	+	lncRNA	chr17	1326690	1366456	CRK	-	processed_transcript	2012	opposite	2243_ID	chr17	1327767	1329657	1891	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8339	ENST00000572491.2_3	ENST00000311378.5_4	chr17	48917417	48918987	AC091062.1	-	lncRNA	chr17	48912946	48919714	WFIKKN2	+	protein_coding	1570	opposite	2973_ID	chr17	48917418	48918987	1570	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
8348	ENST00000572913.1_3	ENST00000649869.1_1	chr16	11435665	11439068	AC009121.3	-	lncRNA	chr16	11343483	11475519	RMI2	+	processed_transcript	3403	opposite	890_ID	chr16	11435666	11439068	3403	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8356	ENST00000573222.1_3	ENST00000653385.1_3	chr17	6897960	6898508	AC040977.1	-	lncRNA	chr17	6778550	6915653	ALOX12-AS1	-	lncRNA	548	same	2297_ID	chr17	6897961	6898508	548	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8357	ENST00000573301.1_3	ENST00000671267.1_1	chr17	48986997	48987593	AC005920.4	-	lncRNA	chr17	48944114	48988135	TOB1-AS1	+	lncRNA	596	opposite	386_ID	chr17	48986998	48987593	596	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
8365	ENST00000573755.1_3	ENST00000653385.1_3	chr17	6857416	6882279	AC027763.2	-	lncRNA	chr17	6778550	6915653	ALOX12-AS1	-	lncRNA	24863	same	2231_ID	chr17	6857417	6882279	24863	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8385	ENST00000574681.1_3	ENST00000649869.1_1	chr16	11441999	11443178	AC009121.2	-	lncRNA	chr16	11343483	11475519	RMI2	+	processed_transcript	1179	opposite	889_ID	chr16	11442000	11443178	1179	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8395	ENST00000575056.1_3	ENST00000573772.2_2	chr17	5143802	5144838	AC087500.2	-	lncRNA	chr17	5118540	5151477	AC087500.1	+	lncRNA	1036	opposite	2824_ID	chr17	5143803	5144838	1036	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8408	ENST00000576046.1_1	ENST00000616609.1_1	chr7	74648629	74649628	AC211486.2	+	lncRNA	chr7	74641152	74650014	AC211486.5	+	lncRNA	999	same	4250_ID	chr7	74648630	74649628	999	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8433	ENST00000576859.1_3	ENST00000658997.1_4	chr17	78997344	78999303	AC127496.2	-	lncRNA	chr17	78991768	79001879	AC127496.5	-	lncRNA	1959	same	4035_ID	chr17	78997345	78999303	1959	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8448	ENST00000577239.1	ENST00000413145.1_1	chr9	6661650	6661936	RN7SL123P	+	misc_RNA	chr9	6645955	6670635	AL162411.1	+	lncRNA	286	same	9957_ID	chr9	6661651	6661936	286	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8491	ENST00000577460.1	ENST00000296978.4_2	chr6	130755409	130755498	AL137251.1	+	miRNA	chr6	130687161	130764212	TMEM200A	+	protein_coding	89	same	4952_ID	chr6	130755410	130755498	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8515	ENST00000577593.1	ENST00000330636.9_5	chr6	5224960	5225030	AL162381.1	-	miRNA	chr6	5108652	5261183	LYRM4	-	protein_coding	70	same	5190_ID	chr6	5224961	5225030	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8526	ENST00000577654.1	ENST00000550019.1_1	chr12	47757968	47758052	MIR4494	-	miRNA	chr12	47747536	47763718	LINC02416	+	lncRNA	84	opposite	8577_ID	chr12	47757969	47758052	84	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8554	ENST00000577764.1	ENST00000406438.5_2	chr17	18227535	18229211	RP1-178F10.3	+	lincRNA	chr17	18218606	18231370	SMCR8	+	protein_coding	1676	same	11875_ID	chr17	18227536	18229211	1676	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
8565	ENST00000577795.1	ENST00000432328.2_1	chr12	47581594	47581674	MIR4698	+	miRNA	chr12	47473385	47630445	PCED1B	+	protein_coding	80	same	8685_ID	chr12	47581595	47581674	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8571	ENST00000577835.1_1	ENST00000661028.1_3	chr18	66094266	66104155	AC005909.1	+	lncRNA	chr18	65904336	66162370	AC005909.2	-	lncRNA	9889	opposite	381_ID	chr18	66094267	66104155	9889	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8602	ENST00000578027.1	ENST00000451973.1_3	chr19	50436320	50436394	MIR4751	+	miRNA	chr19	50412757	50461648	AC011452.1	-	nonsense_mediated_decay	74	opposite	8740_ID	chr19	50436321	50436394	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8607	ENST00000578066.1	ENST00000330636.9_5	chr6	5148466	5148556	MIR3691	-	miRNA	chr6	5108652	5261183	LYRM4	-	protein_coding	90	same	8391_ID	chr6	5148467	5148556	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8608	ENST00000578074.1	ENST00000425361.5_4	chr2	130941015	130941092	AC018804.1	+	miRNA	chr2	130939309	130948286	MZT2B	+	protein_coding	77	same	1666_ID	chr2	130941016	130941092	77	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8638	ENST00000578268.1	ENST00000583377.1_3	chr17	29421367	29421443	MIR4733	-	miRNA	chr17	29417804	29422468	AC138207.2	-	lncRNA	76	same	8721_ID	chr17	29421368	29421443	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8655	ENST00000578372.1_8	ENST00000313324.9_7	chr7	6370845	6388389	AC009412.1	-	protein_coding	chr7	6369041	6388598	FAM220A	-	protein_coding	17544	same	959_ID	chr7	6370846	6388389	17544	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
8658	ENST00000578394.1	ENST00000429878.2_2	chr2	11977058	11977112	MIR4262	-	miRNA	chr2	11974051	12006410	MIR3681HG	+	lncRNA	54	opposite	8463_ID	chr2	11977059	11977112	54	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8672	ENST00000578485.1	ENST00000595084.3_2	chr3	181531188	181531488	RN7SL703P	+	misc_RNA	chr3	181417385	181554667	SOX2-OT	+	lncRNA	300	same	10373_ID	chr3	181531189	181531488	300	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8680	ENST00000578530.1	ENST00000586098.1_5	chr11	58433273	58433366	AP000445.3	+	miRNA	chr11	58407898	58480322	GLYAT	-	protein_coding	93	opposite	5988_ID	chr11	58433274	58433366	93	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8698	ENST00000578636.1	ENST00000244217.6_4	chr2	71352652	71352722	AC007881.1	+	miRNA	chr2	71336816	71357359	MCEE	-	protein_coding	70	opposite	662_ID	chr2	71352653	71352722	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8715	ENST00000578735.1	ENST00000595973.2_1	chr19	18497371	18497444	MIR3189	+	miRNA	chr19	18492979	18499157	GDF15	+	protein_coding	73	same	8302_ID	chr19	18497372	18497444	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8779	ENST00000579106.1	ENST00000439136.2_1	chr17	21132648	21132941	RN7SL426P	-	misc_RNA	chr17	21117643	21133348	AC087294.1	+	lncRNA	293	opposite	10175_ID	chr17	21132649	21132941	293	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8806	ENST00000579313.1	ENST00000674068.1_1	chr9	112273754	112273825	MIR3927	-	miRNA	chr9	112260604	112542813	PALM2AKAP2	+	protein_coding	71	opposite	8430_ID	chr9	112273755	112273825	71	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8828	ENST00000579438.1_1	ENST00000580792.1_3	chr17	32503556	32505185	AC005549.1	+	lncRNA	chr17	32496390	32522956	LINC01989	-	lncRNA	3922	opposite	315_ID	chr17	32503557	32505185	1629	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8835	ENST00000579477.1	ENST00000472766.1_1	chr3	8812876	8812973	hsa-mir-548ba	+	miRNA	chr3	8775521	8883492	CAV3	+	processed_transcript	97	same	7301_ID	chr3	8812877	8812973	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8842	ENST00000579507.1	ENST00000460467.1_1	chr3	16974687	16974752	MIR3714	+	miRNA	chr3	16844158	17052576	PLCL2	+	processed_transcript	65	same	8396_ID	chr3	16974688	16974752	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8848	ENST00000579525.1	ENST00000663085.1_1	chr11	9111858	9111926	MIR5691	-	miRNA	chr11	9110829	9112003	AC079296.2	+	lncRNA	68	opposite	8963_ID	chr11	9111859	9111926	68	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
8849	ENST00000579533.1	ENST00000454482.2_1	chr21	38587905	38588202	RN7SL678P	+	misc_RNA	chr21	38580803	38594037	DSCR9	+	lncRNA	297	same	10361_ID	chr21	38587906	38588202	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8851	ENST00000579548.1	ENST00000456519.2_3	chr2	105609359	105609438	AC010884.2	-	miRNA	chr2	105552698	105654954	MRPS9-AS2	-	lncRNA	79	same	1155_ID	chr2	105609360	105609438	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8879	ENST00000579710.1	ENST00000666240.1_1	chr15	75518211	75518312	AC113208.1	+	miRNA	chr15	75518124	75519526	AC113208.5	+	lncRNA	101	same	3845_ID	chr15	75518212	75518312	101	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	2
8885	ENST00000579767.1	ENST00000570025.1_2	chr16	30886586	30886644	MIR4519	-	miRNA	chr16	30886542	30906400	MIR762HG	+	lncRNA	58	opposite	8600_ID	chr16	30886587	30886644	58	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
8911	ENST00000579887.1	ENST00000637702.1_3	chr1	5624130	5624203	MIR4417	+	miRNA	chr1	5621768	5728315	AL365255.1	-	lncRNA	73	opposite	8524_ID	chr1	5624131	5624203	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8922	ENST00000579927.1	ENST00000155926.8_1	chr2	12877492	12877570	MIR3125	+	miRNA	chr2	12857014	12882860	TRIB2	+	protein_coding	78	same	8248_ID	chr2	12877493	12877570	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8934	ENST00000579992.1	ENST00000220772.8_4	chr8	41128566	41128662	MIR548AO	-	miRNA	chr8	41119480	41166992	SFRP1	-	protein_coding	96	same	8880_ID	chr8	41128567	41128662	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8954	ENST00000580150.1_3	ENST00000613385.4_3	chr18	47010905	47012519	AC100778.2	-	lncRNA	chr18	47003619	47013622	C18orf32	-	protein_coding	1614	same	3408_ID	chr18	47010906	47012519	1614	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8958	ENST00000580173.1	ENST00000432071.1_1	chr2	85794786	85795083	RN7SL126P	-	misc_RNA	chr2	85788684	85809120	VAMP8	+	protein_coding	297	opposite	9960_ID	chr2	85794787	85795083	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9010	ENST00000580479.1	ENST00000669987.1_3	chr9	36823535	36823596	MIR4475	-	miRNA	chr9	36779777	36830453	AL450267.2	+	lncRNA	61	opposite	8565_ID	chr9	36823536	36823596	61	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9026	ENST00000580563.1	ENST00000641664.1_6	chr14	20501819	20501923	AL359218.1	+	miRNA	chr14	20497557	20504197	OR4K13	-	protein_coding	104	opposite	5477_ID	chr14	20501820	20501923	104	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
9034	ENST00000580588.1	ENST00000607778.2_2	chr6	158596015	158596102	AL590703.1	+	miRNA	chr6	158589381	158620376	GTF2H5	+	protein_coding	87	same	5778_ID	chr6	158596016	158596102	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9040	ENST00000580602.1	ENST00000280614.4_2	chr4	139938646	139938733	AC093602.1	-	miRNA	chr4	139936934	139967093	NOCT	+	protein_coding	87	opposite	3224_ID	chr4	139938647	139938733	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9051	ENST00000580651.1	ENST00000329335.3_3	chr8	10524487	10524580	MIR4286	+	miRNA	chr8	10478605	10569697	RP1L1	-	processed_transcript	93	opposite	8481_ID	chr8	10524488	10524580	93	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9069	ENST00000580744.1	ENST00000314355.7_2	chr9	91927139	91927221	MIR3153	+	miRNA	chr9	91926109	91931618	CKS2	+	protein_coding	82	same	8274_ID	chr9	91927140	91927221	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9105	ENST00000580920.1	ENST00000368439.5_1	chr1	154948168	154948259	MIR4258	+	miRNA	chr1	154947128	154951724	CKS1B	+	protein_coding	91	same	8460_ID	chr1	154948169	154948259	91	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9133	ENST00000581071.1	ENST00000653552.1_3	chr8	100011511	100011629	AC104986.1	+	miRNA	chr8	99970641	100025971	VPS13B-DT	-	lncRNA	118	opposite	3581_ID	chr8	100011512	100011629	118	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9147	ENST00000581134.1_3	ENST00000583696.1_3	chr18	29825908	29828995	AC015563.1	-	lncRNA	chr18	29704839	29867058	GAREM1	-	protein_coding	3087	same	1466_ID	chr18	29825909	29828995	3087	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9184	ENST00000581392.1	ENST00000437748.2_3	chr13	45576284	45576580	RN7SL49P	+	misc_RNA	chr13	45556211	45657260	AL359706.1	-	lncRNA	296	opposite	10231_ID	chr13	45576285	45576580	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9191	ENST00000581447.1_2	ENST00000583696.1_3	chr18	29769987	29800367	MEP1B	+	protein_coding	chr18	29704839	29867058	GAREM1	-	protein_coding	35336	opposite	7942_ID	chr18	29769988	29800367	30380	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9220	ENST00000581654.1	ENST00000421802.1_3	chr21	34836772	34836865	AP000301.1	+	miRNA	chr21	34804625	34851655	IFNGR2	+	protein_coding	93	same	5970_ID	chr21	34836773	34836865	93	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9224	ENST00000581700.1	ENST00000412403.1_1	chr17	29902287	29902377	MIR4725	+	miRNA	chr17	29898160	29902678	AC003101.1	+	lncRNA	90	same	8714_ID	chr17	29902288	29902377	90	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9256	ENST00000581844.1_3	ENST00000661028.1_3	chr18	65925575	65932064	LINC01912	-	lncRNA	chr18	65904336	66162370	AC005909.2	-	lncRNA	6748	same	7699_ID	chr18	65925576	65932064	6489	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9261	ENST00000581853.1	ENST00000511703.6_4	chr4	185772166	185772264	MIR3945	-	miRNA	chr4	185765707	185776905	MIR3945HG	-	lncRNA	98	same	8443_ID	chr4	185772167	185772264	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9295	ENST00000581999.1	ENST00000585285.1_3	chr17	72744751	72744838	MIR3615	+	miRNA	chr17	72743457	72745051	AC016888.1	-	lncRNA	87	opposite	8350_ID	chr17	72744752	72744838	87	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	2
9296	ENST00000582014.1	ENST00000658243.1_3	chr11	12985186	12985238	AC084859.1	+	miRNA	chr11	12983087	13011093	LINC00958	-	lncRNA	52	opposite	2770_ID	chr11	12985187	12985238	52	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9318	ENST00000582173.1	ENST00000531288.1_1	chr1	144877329	144877395	AL138796.1	+	miRNA	chr1	144874944	144878163	AC239802.1	+	lncRNA	66	same	4976_ID	chr1	144877330	144877395	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9319	ENST00000582178.1	ENST00000503349.1_1	chr5	86410695	86410771	MIR4280	-	miRNA	chr5	86263137	86433529	AC109492.1	+	lncRNA	76	opposite	8476_ID	chr5	86410696	86410771	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9335	ENST00000582237.1	ENST00000666926.1_3	chr11	47422520	47422593	MIR4487	+	miRNA	chr11	47403059	47430822	AC090559.1	-	lncRNA	73	opposite	8572_ID	chr11	47422521	47422593	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9354	ENST00000582325.1_1	ENST00000671231.1_1	chr17	17410664	17411622	AC020558.2	+	lncRNA	chr17	17407318	17415580	AC020558.6	+	lncRNA	958	same	1708_ID	chr17	17410665	17411622	958	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9397	ENST00000582614.1	ENST00000444102.1_3	chr6	167411294	167411400	MIR3939	-	miRNA	chr6	167383113	167412553	Z94721.1	-	lncRNA	106	same	8436_ID	chr6	167411295	167411400	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9405	ENST00000582642.1	ENST00000332375.4_4	chr7	100060451	100060725	RN7SL161P	+	misc_RNA	chr7	100054242	100061883	C7orf61	-	protein_coding	274	opposite	9984_ID	chr7	100060452	100060725	274	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9415	ENST00000582690.1	ENST00000636261.1_3	chr5	158952945	158953018	AC008703.2	+	miRNA	chr5	158848221	158984695	AC008691.1	+	lncRNA	73	same	779_ID	chr5	158952946	158953018	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9417	ENST00000582691.1	ENST00000559909.1_1	chr15	51534386	51534461	MIR4713	+	miRNA	chr15	51329684	51586109	MIR4713HG	+	lncRNA	75	same	8701_ID	chr15	51534387	51534461	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9452	ENST00000582872.1	ENST00000567649.1_5	chr16	2063181	2063475	RN7SL219P	+	misc_RNA	chr16	2059926	2070593	NPW	+	protein_coding	294	same	10028_ID	chr16	2063182	2063475	294	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9459	ENST00000582903.1	ENST00000521487.2_1	chr8	117886966	117887039	MIR3610	-	miRNA	chr8	117886662	117889107	RAD21-AS1	+	lncRNA	73	opposite	8343_ID	chr8	117886967	117887039	73	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	2
9464	ENST00000582929.1	ENST00000527895.1_1	chr19	42637596	42637665	MIR4323	-	miRNA	chr19	42636706	42641251	AC010247.1	+	lncRNA	69	opposite	8518_ID	chr19	42637597	42637665	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9478	ENST00000583008.1	ENST00000648835.1_4	chr3	141506752	141506851	AC112504.1	+	miRNA	chr3	141457315	141526761	AC112504.2	+	nonsense_mediated_decay	99	same	3828_ID	chr3	141506753	141506851	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9503	ENST00000583158.1	ENST00000661223.1_3	chr6	2854264	2854341	MIR4645	-	miRNA	chr6	2851463	2876751	SERPINB9P1	-	lncRNA	77	same	8630_ID	chr6	2854265	2854341	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9509	ENST00000583199.1	ENST00000637419.1_3	chr16	85339831	85339931	MIR5093	-	miRNA	chr16	85203130	85667738	GSE1	+	protein_coding	100	opposite	8834_ID	chr16	85339832	85339931	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9536	ENST00000583319.1	ENST00000562814.1_3	chrX	39696814	39696867	MIR1587	+	miRNA	chrX	39696789	39707612	AL592164.1	-	lncRNA	53	opposite	8112_ID	chrX	39696815	39696867	53	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
9553	ENST00000583467.1	ENST00000542416.1_3	chr12	125400092	125400205	MIR5188	+	miRNA	chr12	125398132	125401914	UBC	-	protein_coding	113	opposite	8850_ID	chr12	125400093	125400205	113	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9558	ENST00000583493.1_1	ENST00000310045.8_4	chr18	65173825	65181267	AC110597.3	+	lncRNA	chr18	65173823	65183957	DSEL	-	protein_coding	7442	opposite	3789_ID	chr18	65173826	65181267	7442	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
9560	ENST00000583498.1	ENST00000595925.1_3	chr3	69098108	69098186	MIR3136	-	miRNA	chr3	69063314	69105773	AC109587.1	+	lncRNA	78	opposite	8260_ID	chr3	69098109	69098186	78	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9576	ENST00000583592.1	ENST00000295731.7_4	chr2	219923409	219923472	MIR3131	-	miRNA	chr2	219919145	219925643	IHH	-	protein_coding	63	same	8254_ID	chr2	219923410	219923472	63	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9602	ENST00000583716.1	ENST00000580792.1_3	chr17	32510102	32510154	AC005549.2	-	miRNA	chr17	32496390	32522956	LINC01989	-	lncRNA	52	same	316_ID	chr17	32510103	32510154	52	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9610	ENST00000583750.1	ENST00000499624.3_1	chr15	50652525	50652607	MIR4712	+	miRNA	chr15	50647663	50664399	GABPB1-AS1	+	lncRNA	82	same	8699_ID	chr15	50652526	50652607	82	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
9628	ENST00000583875.1	ENST00000585379.5_4	chr19	9935952	9936217	RN7SL94P	+	misc_RNA	chr19	9921536	9938492	FBXL12	-	protein_coding	265	opposite	10502_ID	chr19	9935953	9936217	265	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9629	ENST00000583892.1	ENST00000422730.4_3	chr17	46801769	46801837	MIR3185	-	miRNA	chr17	46800546	46802120	PRAC2	+	protein_coding	68	opposite	8299_ID	chr17	46801770	46801837	68	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
9635	ENST00000583934.1_3	ENST00000578649.1_1	chr17	16285465	16285983	AC093484.3	-	lncRNA	chr17	16284408	16286059	UBB	+	processed_transcript	518	opposite	3208_ID	chr17	16285466	16285983	518	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
9653	ENST00000584033.1	ENST00000583946.1_1	chr18	15090176	15090457	RN7SL662P	+	misc_RNA	chr18	15075443	15122766	AP005242.1	+	lncRNA	281	same	10347_ID	chr18	15090177	15090457	281	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9674	ENST00000584125.1_1	ENST00000625127.3_4	chr17	30757985	30759860	AC005899.1	+	lncRNA	chr17	30750989	30773056	AC005899.8	-	lncRNA	1875	opposite	377_ID	chr17	30757986	30759860	1875	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9689	ENST00000584185.1	ENST00000281321.3_2	chr4	147560412	147560495	AC093887.1	+	miRNA	chr4	147560044	147563626	POU4F2	+	protein_coding	83	same	3256_ID	chr4	147560413	147560495	83	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	2
9722	ENST00000584375.1	ENST00000426125.1_1	chr1	85750292	85750356	AL590113.1	+	miRNA	chr1	85743354	85913807	AL078459.1	+	lncRNA	64	same	5752_ID	chr1	85750293	85750356	64	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9734	ENST00000584462.1	ENST00000673955.1_1	chr1	180514967	180515067	AL358354.1	+	miRNA	chr1	180478514	180535659	OVAAL	+	lncRNA	100	same	5454_ID	chr1	180514968	180515067	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9745	ENST00000584505.1	ENST00000586905.3_1	chr18	44906866	44906936	MIR4527	+	miRNA	chr18	44812095	45120921	MIR4527HG	+	lncRNA	70	same	8609_ID	chr18	44906867	44906936	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9759	ENST00000584571.1	ENST00000432484.6_3	chr6	75429461	75429559	AL590684.1	-	miRNA	chr6	75239963	75443995	AL356277.3	-	lncRNA	98	same	5777_ID	chr6	75429462	75429559	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9784	ENST00000584743.1	ENST00000641569.1_4	chr12	55948778	55948866	AC009779.1	-	miRNA	chr12	55943385	55949616	OR6C4	+	protein_coding	88	opposite	994_ID	chr12	55948779	55948866	88	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	2
9790	ENST00000584757.1	ENST00000360029.4_4	chr4	44450021	44450127	AC131951.1	+	miRNA	chr4	44175919	44450826	KCTD8	-	protein_coding	106	opposite	4094_ID	chr4	44450022	44450127	106	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	2
9804	ENST00000584881.1	ENST00000556407.5_2	chr14	101280827	101280911	MIR2392	+	miRNA	chr14	101245746	101295522	MEG3	+	lncRNA	84	same	8200_ID	chr14	101280828	101280911	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9806	ENST00000584882.1	ENST00000558899.2_2	chr20	49555182	49555269	AL034553.1	+	miRNA	chr20	49547520	49561671	ADNP-AS1	+	lncRNA	87	same	4594_ID	chr20	49555183	49555269	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9821	ENST00000584984.1	ENST00000443771.2_2	chr9	96581638	96581703	MIR4291	+	miRNA	chr9	96570628	96620622	AL442224.1	+	lncRNA	65	same	8486_ID	chr9	96581639	96581703	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9833	ENST00000585029.1	ENST00000593581.5_3	chr19	8454173	8454264	MIR4999	-	miRNA	chr19	8439262	8455569	RAB11B-AS1	-	lncRNA	91	same	8802_ID	chr19	8454174	8454264	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9850	ENST00000585102.1	ENST00000409911.5_4	chr2	77268903	77268989	AC079117.3	-	miRNA	chr2	76974844	77749465	LRRTM4	-	protein_coding	86	same	2622_ID	chr2	77268904	77268989	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9866	ENST00000585192.1	ENST00000303694.6_3	chr12	104985410	104985494	MIR3922	+	miRNA	chr12	104850725	105155792	CHST11	+	protein_coding	84	same	8427_ID	chr12	104985411	104985494	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9873	ENST00000585213.1	ENST00000366621.8_2	chr1	233759897	233759965	MIR4427	+	miRNA	chr1	233749851	233808260	KCNK1	+	protein_coding	68	same	8529_ID	chr1	233759898	233759965	68	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9876	ENST00000585233.1	ENST00000567777.1_1	chr16	76902832	76902916	MIR4719	+	miRNA	chr16	76770238	76962066	AC106729.1	+	lncRNA	84	same	8706_ID	chr16	76902833	76902916	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
9886	ENST00000585278.1	ENST00000624935.3_4	chr2	89111883	89111968	MIR4436A	+	miRNA	chr2	89110699	89161075	AC244205.1	-	lncRNA	85	opposite	8537_ID	chr2	89111884	89111968	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9927	ENST00000586176.1_1	ENST00000589025.6_5	chr19	37994807	37995367	AC022148.2	-	lncRNA	chr19	37988060	37998024	ZNF793-AS1	-	lncRNA	560	same	1829_ID	chr19	37994808	37995367	560	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9953	ENST00000586922.2_3	ENST00000610712.1_3	chr18	32860830	32870165	AC011815.1	-	lncRNA	chr18	32831021	32870209	ZSCAN30	-	protein_coding	9335	same	1297_ID	chr18	32860831	32870165	9335	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
10012	ENST00000588717.1_1	ENST00000665759.1_1	chr19	37264613	37266810	AC020928.2	-	lncRNA	chr19	37264013	37267960	AC020928.1	+	lncRNA	2197	opposite	1763_ID	chr19	37264614	37266810	2197	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
10087	ENST00000591422.1_3	ENST00000564292.5_3	chr17	74953104	74954304	AC016168.1	-	lncRNA	chr17	74946555	74965238	AC016168.2	-	lncRNA	1200	same	1520_ID	chr17	74953105	74954304	1200	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10126	ENST00000592882.1_3	ENST00000292433.4_2	chr19	13263909	13265007	AC011446.2	-	lncRNA	chr19	13261224	13265725	IER2	+	protein_coding	1123	opposite	1214_ID	chr19	13263910	13265007	1098	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
10136	ENST00000593078.1_1	ENST00000591924.5_1	chr18	33175864	33177563	AC090220.1	+	lncRNA	chr18	33161703	33243768	GALNT1	+	protein_coding	1699	same	2883_ID	chr18	33175865	33177563	1699	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10138	ENST00000593139.1_1	ENST00000591568.1_4	chr17	40831980	40834038	AC100793.2	+	lncRNA	chr17	40831743	40835935	CCR10	-	protein_coding	2058	opposite	3416_ID	chr17	40831981	40834038	2058	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
10145	ENST00000593393.1_1	ENST00000596921.5_1	chr19	58915604	58918663	AC012313.1	-	lncRNA	chr19	58912870	58928486	ZNF584	+	processed_transcript	4247	opposite	1358_ID	chr19	58915605	58918663	3059	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10157	ENST00000593907.1	ENST00000637503.1_1	chr5	138852107	138852506	AC138517.1	+	protein_coding	chr5	138850362	138854357	SMIM33	+	protein_coding	399	same	4187_ID	chr5	138852108	138852506	399	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
10162	ENST00000594077.1_1	ENST00000595444.1_4	chr19	17407004	17407504	AC010463.3	-	lncRNA	chr19	17403417	17417464	MRPL34	+	protein_coding	500	opposite	1082_ID	chr19	17407005	17407504	500	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10177	ENST00000594531.1	ENST00000222339.7_3	chr19	42582739	42584259	CTB-59C6.3	-	antisense	chr19	42572628	42585562	ZNF574	+	protein_coding	1520	opposite	6732_ID	chr19	42582740	42584259	1520	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
10194	ENST00000595277.1_1	ENST00000595891.1_1	chr19	8943740	8944217	AC008734.2	+	lncRNA	chr19	8943073	8953995	MBD3L1	+	protein_coding	477	same	785_ID	chr19	8943741	8944217	477	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10227	ENST00000596350.1_3	ENST00000652263.1_4	chr19	51058626	51061226	AC008743.1	-	lncRNA	chr19	51020148	51071692	LRRC4B	-	protein_coding	2600	same	797_ID	chr19	51058627	51061226	2600	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10233	ENST00000596472.1_3	ENST00000420022.3_1	chr19	50192109	50193830	AC011495.3	-	lncRNA	chr19	50191920	50193832	ADM5	+	protein_coding	1721	opposite	1251_ID	chr19	50192110	50193830	1721	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	2
10241	ENST00000596631.1_1	ENST00000457113.1_3	chr19	54945362	54945845	AC245884.9	+	lncRNA	chr19	54941831	54945878	AC245884.1	-	lncRNA	483	opposite	4314_ID	chr19	54945363	54945845	483	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
10246	ENST00000596781.1_3	ENST00000594624.6_1	chr19	42928535	42929223	AC011497.1	-	lncRNA	chr19	42901325	43156507	LIPE-AS1	+	lncRNA	688	opposite	1252_ID	chr19	42928536	42929223	688	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10295	ENST00000598070.1_3	ENST00000327473.9_2	chr19	4654975	4655536	AC005339.1	-	lncRNA	chr19	4639527	4655580	TNFAIP8L1	+	protein_coding	561	opposite	279_ID	chr19	4654976	4655536	561	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	2	2
10308	ENST00000598375.5_1	ENST00000594325.1_3	chr19	18699494	18703144	REX1BD	+	retained_intron	chr19	18683029	18705245	CRLF1	-	processed_transcript	3653	opposite	9734_ID	chr19	18699495	18703144	3650	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10310	ENST00000598376.1_3	ENST00000599924.1_1	chr19	48118955	48129652	BICRA-AS1	-	lncRNA	chr19	48110780	48236355	AC010519.1	+	lncRNA	10697	opposite	6416_ID	chr19	48118956	48129652	10697	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10332	ENST00000599129.1_1	ENST00000593802.1_5	chr19	22605314	22608847	AC011516.1	+	lncRNA	chr19	22586235	22715287	ZNF98	-	protein_coding	3533	opposite	1263_ID	chr19	22605315	22608847	3533	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10351	ENST00000599640.1	ENST00000665006.1_1	chr1	147631966	147632428	BX842679.1	-	protein_coding	chr1	147628421	147648241	LINC02805	+	lncRNA	462	opposite	6460_ID	chr1	147631967	147632428	462	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10365	ENST00000600172.1_5	ENST00000594624.6_1	chr19	43031199	43065386	CEACAM1	-	protein_coding	chr19	42901325	43156507	LIPE-AS1	+	lncRNA	53931	opposite	6611_ID	chr19	43031200	43065386	34187	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10370	ENST00000600258.1_1	ENST00000594900.1_5	chr19	52255278	52272176	FPR2	+	protein_coding	chr19	52250128	52307363	FPR1	-	protein_coding	18506	opposite	7076_ID	chr19	52255279	52272176	16898	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10398	ENST00000601181.6_4	ENST00000594624.6_1	chr19	42932429	42947098	CXCL17	-	protein_coding	chr19	42901325	43156507	LIPE-AS1	+	lncRNA	14669	opposite	6746_ID	chr19	42932430	42947098	14669	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10425	ENST00000602083.1_3	ENST00000597229.2_2	chr19	7584801	7585346	AC008878.4	-	lncRNA	chr19	7580988	7585911	ZNF358	+	protein_coding	545	opposite	823_ID	chr19	7584802	7585346	545	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	2	2
10430	ENST00000602277.1_1	ENST00000602461.1_4	chrX	45624174	45624702	AC234772.1	-	lncRNA	chrX	45604638	45629677	MIR222HG	-	lncRNA	528	same	4263_ID	chrX	45624175	45624702	528	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10457	ENST00000602445.1_1	ENST00000272224.5_2	chr2	20878013	20878692	AC012065.3	-	lncRNA	chr2	20866903	20879003	GDF7	+	protein_coding	679	opposite	1325_ID	chr2	20878014	20878692	679	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
10464	ENST00000602510.1_1	ENST00000533902.2_1	chr11	86544109	86548657	AP000654.1	+	lncRNA	chr11	86511562	86663952	PRSS23	+	protein_coding	4548	same	6006_ID	chr11	86544110	86548657	4548	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10467	ENST00000602575.1_1	ENST00000416569.3_5	chr8	10962200	10964214	AF131215.6	-	lncRNA	chr8	10753554	11059342	XKR6	-	protein_coding	2014	same	4397_ID	chr8	10962201	10964214	2014	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10473	ENST00000602605.1_1	ENST00000370932.6_3	chr1	71471536	71472185	AL031429.2	-	lncRNA	chr1	71318035	71513491	PTGER3	-	protein_coding	649	same	4520_ID	chr1	71471537	71472185	649	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10489	ENST00000602718.1_1	ENST00000617763.1_3	chr22	42485633	42486032	AL021878.4	-	lncRNA	chr22	42481530	42486888	NDUFA6	-	protein_coding	399	same	4462_ID	chr22	42485634	42486032	399	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10506	ENST00000602820.1_1	ENST00000640168.2_2	chr4	57827092	57827539	AC069307.1	-	lncRNA	chr4	57774041	57832904	REST	+	protein_coding	447	opposite	2485_ID	chr4	57827093	57827539	447	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10515	ENST00000602862.1_3	ENST00000637419.1_3	chr16	85613614	85617177	AC092127.2	-	lncRNA	chr16	85203130	85667738	GSE1	+	protein_coding	3563	opposite	3059_ID	chr16	85613615	85617177	3563	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10526	ENST00000602949.1_1	ENST00000602735.2_4	chr11	325702	326294	AC136475.7	-	lncRNA	chr11	319772	327537	IFITM3	-	protein_coding	592	same	4158_ID	chr11	325703	326294	592	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	1	2
10591	ENST00000604312.1_1	ENST00000593802.1_5	chr19	22638789	22639261	AC025811.1	+	lncRNA	chr19	22586235	22715287	ZNF98	-	protein_coding	472	opposite	2108_ID	chr19	22638790	22639261	472	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10596	ENST00000604480.1_1	ENST00000655032.1_1	chr13	44361726	44361988	AL162713.1	+	lncRNA	chr13	44360916	44388934	AL162713.2	+	lncRNA	262	same	5215_ID	chr13	44361727	44361988	262	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10597	ENST00000604491.1_1	ENST00000613067.1_1	chr3	71634093	71636560	AC097634.1	+	lncRNA	chr3	71630871	71677709	AC097634.3	+	lncRNA	2467	same	3328_ID	chr3	71634094	71636560	2467	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10606	ENST00000604716.1_1	ENST00000468425.2_1	chr1	28566019	28567964	AL353622.1	-	lncRNA	chr1	28562652	28573417	ATP5IF1	+	protein_coding	1945	opposite	5246_ID	chr1	28566020	28567964	1945	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10619	ENST00000605049.1_1	ENST00000518468.1_5	chr8	53635462	53635701	AC113139.1	+	lncRNA	chr8	53597983	53658403	RB1CC1	-	protein_coding	239	opposite	3834_ID	chr8	53635463	53635701	239	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10620	ENST00000605051.1_1	ENST00000657284.1_1	chr12	89765596	89766136	AC010201.1	+	lncRNA	chr12	89747574	89812336	AC010201.3	+	lncRNA	540	same	1034_ID	chr12	89765597	89766136	540	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10622	ENST00000605085.1_1	ENST00000483463.1_3	chr1	154934300	154935099	AL451085.2	+	lncRNA	chr1	154932113	154936329	PYGO2	-	processed_transcript	799	opposite	5670_ID	chr1	154934301	154935099	799	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10634	ENST00000605539.1_1	ENST00000518539.2_1	chr8	1922983	1923480	AC019257.2	+	lncRNA	chr8	1919562	1924644	KBTBD11-OT1	+	lncRNA	497	same	1700_ID	chr8	1922984	1923480	497	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10639	ENST00000605595.1_1	ENST00000657284.1_1	chr12	89761583	89763078	AC010201.2	+	lncRNA	chr12	89747574	89812336	AC010201.3	+	lncRNA	1495	same	1035_ID	chr12	89761584	89763078	1495	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10640	ENST00000605631.1_1	ENST00000467052.1_1	chr9	101705618	101706057	AL136084.2	-	lncRNA	chr9	101705460	101706470	COL15A1	+	processed_transcript	439	opposite	4888_ID	chr9	101705619	101706057	439	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10660	ENST00000606008.1_1	ENST00000457331.1_3	chr3	44708903	44710856	AC124045.1	+	lncRNA	chr3	44598848	44727145	ZKSCAN7-AS1	-	lncRNA	1953	opposite	3997_ID	chr3	44708904	44710856	1953	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10666	ENST00000606110.1_1	ENST00000537226.2_5	chr12	133692277	133698926	AC026786.2	+	lncRNA	chr12	133683402	133707059	ZNF891	-	protein_coding	6649	opposite	2172_ID	chr12	133692278	133698926	6649	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	2
10698	ENST00000606374.1_1	ENST00000669756.1_1	chr6	26968986	26969427	AL133255.1	-	lncRNA	chr6	26924710	26991738	LINC00240	+	lncRNA	441	opposite	4830_ID	chr6	26968987	26969427	441	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10712	ENST00000606512.1_1	ENST00000276585.9_4	chr8	80868699	80869616	AC036214.2	-	lncRNA	chr8	80830951	80942494	MRPS28	-	protein_coding	917	same	2273_ID	chr8	80868700	80869616	917	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10719	ENST00000606555.1_1	ENST00000649628.1_1	chr8	30054919	30055564	AC026979.3	+	lncRNA	chr8	30049944	30058848	AC026979.4	+	lncRNA	645	same	2183_ID	chr8	30054920	30055564	645	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10775	ENST00000607115.1_1	ENST00000472046.1_1	chr3	63993757	63994368	AC012557.1	-	lncRNA	chr3	63989697	63997824	PSMD6-AS2	+	lncRNA	611	opposite	1407_ID	chr3	63993758	63994368	611	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10777	ENST00000607135.1_1	ENST00000663441.1_1	chr5	151104391	151104917	AC011374.2	-	lncRNA	chr5	151089034	151105034	CLMAT3	+	lncRNA	526	opposite	1200_ID	chr5	151104392	151104917	526	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	2	2
10782	ENST00000607250.1_1	ENST00000503152.2_4	chr5	43061496	43062543	AC025171.4	+	lncRNA	chr5	43014832	43067554	AC025171.1	-	lncRNA	1047	opposite	2061_ID	chr5	43061497	43062543	1047	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10802	ENST00000607353.1_1	ENST00000667191.1_1	chr12	46931284	47046333	AC008035.1	+	lncRNA	chr12	46777434	47270567	AC008014.1	+	lncRNA	115049	same	682_ID	chr12	46931285	47046333	115049	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10807	ENST00000607372.1_1	ENST00000649834.1_1	chr1	59278479	59279014	AL136985.2	-	lncRNA	chr1	59250799	59366777	LINC01135	+	lncRNA	535	opposite	4929_ID	chr1	59278480	59279014	535	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10815	ENST00000607458.1_1	ENST00000560609.1_2	chr15	80985556	80986048	AC023302.1	-	lncRNA	chr15	80972024	81046860	ABHD17C	+	protein_coding	492	opposite	1944_ID	chr15	80985557	80986048	492	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10855	ENST00000607830.1_1	ENST00000503152.2_4	chr5	43033817	43034737	AC025171.5	+	lncRNA	chr5	43014832	43067554	AC025171.1	-	lncRNA	920	opposite	2062_ID	chr5	43033818	43034737	920	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10860	ENST00000607856.1_1	ENST00000656444.1_1	chr5	95185012	95185559	AC008592.4	+	lncRNA	chr5	95173948	95195789	LINC01554	+	lncRNA	547	same	753_ID	chr5	95185013	95185559	547	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10871	ENST00000607953.1_3	ENST00000596365.5_1	chr21	35339402	35340874	AP000569.1	-	lncRNA	chr21	35287837	35341887	LINC00649	+	lncRNA	1472	opposite	6003_ID	chr21	35339403	35340874	1472	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10879	ENST00000608014.1_1	ENST00000608559.1_3	chr22	29712732	29713209	AC002059.1	-	lncRNA	chr22	29709491	29715668	RASL10A	-	processed_transcript	477	same	31_ID	chr22	29712733	29713209	477	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10883	ENST00000608056.1_1	ENST00000629773.2_6	chr2	38420489	38420771	AC009229.3	+	lncRNA	chr2	38302842	38458793	CYP1B1-AS1	+	lncRNA	282	same	921_ID	chr2	38420490	38420771	282	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10909	ENST00000608319.1_1	ENST00000543927.6_5	chr22	50962354	50963209	U62317.1	+	lncRNA	chr22	50962001	50964890	SCO2	-	protein_coding	855	opposite	12830_ID	chr22	50962355	50963209	855	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
10913	ENST00000608358.1_1	ENST00000667274.1_3	chr9	93968456	93972581	AL158071.4	-	lncRNA	chr9	93867238	93975328	AL158071.2	-	lncRNA	4125	same	5095_ID	chr9	93968457	93972581	4125	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10916	ENST00000608390.1_1	ENST00000650568.2_2	chr3	72227429	72227961	AC112219.2	+	lncRNA	chr3	72200417	72256927	LINC00870	+	lncRNA	532	same	3815_ID	chr3	72227430	72227961	532	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10935	ENST00000608680.1_1	ENST00000520651.1_1	chr2	190628584	190629182	AC013468.1	-	lncRNA	chr2	190627429	190630282	OSGEPL1-AS1	+	lncRNA	598	opposite	1445_ID	chr2	190628585	190629182	598	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10937	ENST00000608684.1_2	ENST00000487931.1_1	chr1	78470029	78470238	AC103591.3	-	lncRNA	chr1	78444858	78481958	DNAJB4	+	processed_transcript	209	opposite	3451_ID	chr1	78470030	78470238	209	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10953	ENST00000608897.1_1	ENST00000531799.1_1	chr2	71294648	71295255	AC007881.3	-	lncRNA	chr2	71291473	71295511	NAGK	+	processed_transcript	607	opposite	663_ID	chr2	71294649	71295255	607	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10977	ENST00000609178.1_1	ENST00000609268.2_3	chr22	50980733	50981335	KLHDC7B-DT	-	lncRNA	chr22	50979536	50981440	U62317.3	+	lncRNA	602	opposite	7452_ID	chr22	50980734	50981335	602	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
10991	ENST00000609322.1_1	ENST00000452946.1_3	chr22	37767723	37768898	Z94160.2	+	lncRNA	chr22	37736684	37823480	ELFN2	-	lncRNA	1175	opposite	12957_ID	chr22	37767724	37768898	1175	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11002	ENST00000609432.1_1	ENST00000426282.6_3	chr22	45551419	45551892	Z82243.1	-	lncRNA	chr22	45528900	45559662	NUP50-DT	-	lncRNA	473	same	12945_ID	chr22	45551420	45551892	473	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11029	ENST00000609736.1_1	ENST00000215770.6_2	chr22	24311399	24312062	AC253536.6	+	lncRNA	chr22	24309075	24314745	DDTL	+	protein_coding	663	same	4317_ID	chr22	24311400	24312062	663	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11044	ENST00000609909.1_1	ENST00000626572.2_3	chr1	110912775	110915625	AL355488.1	+	lncRNA	chr1	110889737	110960984	LAMTOR5-AS1	+	lncRNA	2850	same	5343_ID	chr1	110912776	110915625	2850	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11057	ENST00000609969.1_1	ENST00000667856.1_1	chr3	107048276	107048809	AC063944.2	+	lncRNA	chr3	106959564	107067311	DUBR	+	lncRNA	533	same	2353_ID	chr3	107048277	107048809	533	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11062	ENST00000610034.1_1	ENST00000652934.1_3	chr10	104674341	104675161	AL356608.1	+	lncRNA	chr10	104658405	104678092	AL356608.3	-	lncRNA	820	opposite	5390_ID	chr10	104674342	104675161	820	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11069	ENST00000610060.1_1	ENST00000641650.1_1	chr3	125493556	125516796	AC092902.2	+	lncRNA	chr3	125485358	125571779	AC092902.4	+	lncRNA	23240	same	3168_ID	chr3	125493557	125516796	23240	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11089	ENST00000610263.1_2	ENST00000311575.6_4	chr10	93667887	93669105	AL359198.1	+	lncRNA	chr10	93666340	93669243	FGFBP3	-	protein_coding	1218	opposite	5476_ID	chr10	93667888	93669105	1218	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	2
11126	ENST00000611145.1_1	ENST00000552828.5_3	chr12	106644536	106646564	AC079174.2	+	lncRNA	chr12	106633671	106698029	CKAP4	-	processed_transcript	2028	opposite	2625_ID	chr12	106644537	106646564	2028	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11131	ENST00000611257.4_3	ENST00000617914.1_1	chr17	34493060	34503955	TBC1D3B	-	protein_coding	chr17	34443569	34504867	AC243829.2	+	lncRNA	10936	opposite	12630_ID	chr17	34493061	34503955	10895	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11139	ENST00000611423.1_1	ENST00000599924.1_1	chr19	48111129	48111711	AC010331.1	-	lncRNA	chr19	48110780	48236355	AC010519.1	+	lncRNA	582	opposite	1064_ID	chr19	48111130	48111711	582	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11170	ENST00000612401.1_1	ENST00000621517.1_3	chr1	147229317	147230542	AC241644.3	+	lncRNA	chr1	147228332	147245466	GJA5	-	protein_coding	1225	opposite	4270_ID	chr1	147229318	147230542	1225	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
11175	ENST00000612427.1_1	ENST00000534692.1_1	chr16	66599522	66599904	AC010542.5	-	lncRNA	chr16	66586465	66600154	CKLF	+	nonsense_mediated_decay	382	opposite	1106_ID	chr16	66599523	66599904	382	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11179	ENST00000612566.1_1	ENST00000560802.1_1	chr15	52309363	52310229	AC090970.2	-	lncRNA	chr15	52244302	52338262	MAPK6	+	processed_transcript	866	opposite	2960_ID	chr15	52309364	52310229	866	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11186	ENST00000612794.1_3	ENST00000551947.5_5	chr14	65405870	65409623	GPX2	-	protein_coding	chr14	65381160	65411309	CHURC1	+	protein_coding	3754	opposite	7175_ID	chr14	65405871	65409623	3753	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11202	ENST00000612996.1_2	ENST00000656210.1_1	chr13	49106148	49106735	AL157813.1	-	lncRNA	chr13	49105935	49130494	AL157813.2	+	lncRNA	587	opposite	5071_ID	chr13	49106149	49106735	587	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
11218	ENST00000613406.1_2	ENST00000563962.6_4	chr16	25117889	25118423	AC133552.5	-	lncRNA	chr16	25096488	25122860	LCMT1-AS1	-	lncRNA	534	same	4114_ID	chr16	25117890	25118423	534	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11253	ENST00000614138.1_2	ENST00000598446.1_3	chr19	52552259	52553007	AC011468.5	+	lncRNA	chr19	52552062	52598991	ZNF432	-	processed_transcript	748	opposite	1232_ID	chr19	52552260	52553007	748	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
11256	ENST00000614212.1_1	ENST00000261735.4_2	chr12	112456607	112457234	AC073575.2	-	lncRNA	chr12	112451229	112461253	ERP29	+	protein_coding	627	opposite	2535_ID	chr12	112456608	112457234	627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11261	ENST00000614443.2_2	ENST00000610496.1_3	chr17	34890813	34895152	PIGW	+	protein_coding	chr17	34889748	34899284	MYO19	-	processed_transcript	4346	opposite	9556_ID	chr17	34890814	34895152	4339	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11268	ENST00000614612.1_1	ENST00000646480.1_1	chr13	107158393	107159061	AL138689.1	-	lncRNA	chr13	107144495	107173978	AL138689.2	+	lncRNA	668	opposite	4965_ID	chr13	107158394	107159061	668	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11269	ENST00000614629.1_1	ENST00000615635.1_1	chr13	110457663	110458215	AL355810.1	+	lncRNA	chr13	110438177	110460599	AL162497.1	+	lncRNA	552	same	5354_ID	chr13	110457664	110458215	552	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11285	ENST00000614959.1_1	ENST00000412306.1_6	chr6	82261402	82263809	AL359693.1	+	lncRNA	chr6	82201155	82461529	TENT5A	-	protein_coding	2407	opposite	5494_ID	chr6	82261403	82263809	2407	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11322	ENST00000615941.1_1	ENST00000375915.4_4	chr13	108118331	108119022	AL445649.1	-	lncRNA	chr13	107815857	108519844	FAM155A	-	protein_coding	691	same	5633_ID	chr13	108118332	108119022	691	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11334	ENST00000616116.1_1	ENST00000641277.1_3	chr16	74323490	74324950	AC009120.5	-	lncRNA	chr16	74050328	74330431	AC138627.1	-	lncRNA	1460	same	886_ID	chr16	74323491	74324950	1460	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11338	ENST00000616244.1_1	ENST00000564670.1_1	chr15	32875812	32876513	AC123768.3	+	lncRNA	chr15	32828247	32879814	LINC02256	+	lncRNA	701	same	3994_ID	chr15	32875813	32876513	701	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11358	ENST00000616786.1_1	ENST00000258662.3_2	chr13	48615886	48616320	AL158196.1	-	lncRNA	chr13	48611861	48621357	NUDT15	+	protein_coding	434	opposite	5109_ID	chr13	48615887	48616320	434	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11363	ENST00000616850.1_1	ENST00000562532.3_2	chr20	30557983	30558634	AL031658.2	+	lncRNA	chr20	30555953	30591190	XKR7	+	protein_coding	651	same	4536_ID	chr20	30557984	30558634	651	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11385	ENST00000617383.1_1	ENST00000614099.1_3	chr13	110683447	110683914	AL355974.2	-	lncRNA	chr13	110640443	110709678	AL390755.1	-	lncRNA	467	same	5364_ID	chr13	110683448	110683914	467	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11432	ENST00000618815.1_1	ENST00000642529.1_1	chr4	143521	144101	AC253576.2	+	lncRNA	chr4	124382	196092	ZNF718	+	nonsense_mediated_decay	580	same	4318_ID	chr4	143522	144101	580	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11489	ENST00000619883.1_1	ENST00000618250.4_2	chr12	2994984	2995495	AC005911.1	+	lncRNA	chr12	2986364	2998689	RHNO1	+	protein_coding	511	same	382_ID	chr12	2994985	2995495	511	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11505	ENST00000620192.1_1	ENST00000555864.2_2	chr15	93135803	93139618	AC091544.4	-	lncRNA	chr15	93124048	93143775	AC091544.2	+	lncRNA	3889	opposite	2999_ID	chr15	93135804	93139618	3815	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11521	ENST00000620512.1_1	ENST00000636737.1_2	chr13	77602078	77602617	AC001226.1	+	lncRNA	chr13	77600901	77652086	MYCBP2-AS1	+	lncRNA	539	same	26_ID	chr13	77602079	77602617	539	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11534	ENST00000620845.1_1	ENST00000637419.1_3	chr16	85523418	85524437	AC133540.1	+	lncRNA	chr16	85203130	85667738	GSE1	+	protein_coding	1019	same	4109_ID	chr16	85523419	85524437	1019	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11549	ENST00000621248.1_1	ENST00000667191.1_1	chr12	46782638	46785909	AC025031.4	+	lncRNA	chr12	46777434	47270567	AC008014.1	+	lncRNA	3271	same	2046_ID	chr12	46782639	46785909	3271	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11566	ENST00000621523.1_1	ENST00000314852.2_3	chr15	75932100	75933317	AC105020.6	+	lncRNA	chr15	75931425	75941047	IMP3	-	protein_coding	1217	opposite	3588_ID	chr15	75932101	75933317	1217	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
11571	ENST00000621587.1_4	ENST00000617914.1_1	chr17	34493119	34503952	TBC1D3E	-	protein_coding	chr17	34443569	34504867	AC243829.2	+	lncRNA	10833	opposite	12633_ID	chr17	34493120	34503952	10833	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11591	ENST00000621925.1_1	ENST00000383263.7_3	chr15	34264259	34264716	AC009268.2	-	lncRNA	chr15	34260697	34359659	CHRM5	+	protein_coding	457	opposite	932_ID	chr15	34264260	34264716	457	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11598	ENST00000622010.1_1	ENST00000585258.1_3	chr18	74517106	74517692	AC027575.2	-	lncRNA	chr18	74506687	74534251	ZNF236-DT	-	lncRNA	586	same	2215_ID	chr18	74517107	74517692	586	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11618	ENST00000622438.1_1	ENST00000553985.1_1	chr14	23999890	24001576	AL135999.2	+	lncRNA	chr14	23982025	24029987	ZFHX2-AS1	+	lncRNA	1686	same	4884_ID	chr14	23999891	24001576	1686	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11620	ENST00000622487.1_1	ENST00000560009.1_3	chr15	40577668	40578110	AC020658.5	-	lncRNA	chr15	40570376	40581773	PLCB2	-	retained_intron	442	same	1722_ID	chr15	40577669	40578110	442	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11625	ENST00000622575.1_1	ENST00000586913.1_3	chr19	14117233	14117585	AC022098.4	+	lncRNA	chr19	14108979	14117851	RFX1	-	processed_transcript	352	opposite	1824_ID	chr19	14117234	14117585	352	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
11637	ENST00000623180.1_3	ENST00000527297.1_1	chr11	129735	139099	LINC02887	-	lncRNA	chr11	129278	186136	AC069287.3	+	lncRNA	9364	opposite	7816_ID	chr11	129736	139099	9364	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11652	ENST00000623548.1_1	ENST00000554218.1_3	chr14	58754750	58755876	LINC00216	+	lncRNA	chr14	58605818	58764857	ARMH4	-	processed_transcript	1126	opposite	7532_ID	chr14	58754751	58755876	1126	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11667	ENST00000623896.1_3	ENST00000668861.1_1	chr21	44579175	44582387	FP236240.1	-	lncRNA	chr21	44528051	44588756	AP001631.2	+	lncRNA	3212	opposite	7070_ID	chr21	44579176	44582387	3212	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11685	ENST00000624187.1_3	ENST00000380252.6_4	chr11	5344588	5345527	OR51B2	-	protein_coding	chr11	5274419	5526835	HBG2	-	protein_coding	939	same	9404_ID	chr11	5344589	5345527	939	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11696	ENST00000624456.1_1	ENST00000492399.5_5	chr13	101189618	101191821	AL136526.1	+	lncRNA	chr13	101184748	101241782	GGACT	-	protein_coding	2203	opposite	4917_ID	chr13	101189619	101191821	2203	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11736	ENST00000626131.1_1	ENST00000653622.1_3	chr6	77271044	77272307	AL591030.1	+	lncRNA	chr6	77231356	77303538	LINC02540	-	lncRNA	1263	opposite	5787_ID	chr6	77271045	77272307	1263	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11764	ENST00000628484.1_1	ENST00000582015.5_4	chr17	19122690	19125840	AC106017.2	+	lncRNA	chr17	19118927	19186530	EPN2	+	protein_coding	3385	same	3627_ID	chr17	19122691	19125840	3150	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11784	ENST00000629899.1_1	ENST00000657889.1_3	chr7	54268916	54270114	AC092848.1	+	lncRNA	chr7	54252763	54325270	AC092848.2	-	lncRNA	1198	opposite	3161_ID	chr7	54268917	54270114	1198	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11817	ENST00000633673.1_1	ENST00000522799.1_3	chr8	2352637	2356542	AC245519.2	+	lncRNA	chr8	2350991	2369693	AC245519.1	-	lncRNA	3905	opposite	4312_ID	chr8	2352638	2356542	3905	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11837	ENST00000635247.1_3	ENST00000412674.1_1	chr1	4004606	4008960	LINC01345	-	lncRNA	chr1	4000676	4015322	LINC01346	+	lncRNA	4478	opposite	7636_ID	chr1	4004607	4008960	4354	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11843	ENST00000635467.1_1	ENST00000660339.1_3	chr10	92381899	92383368	AL390862.1	-	lncRNA	chr10	92210251	92388609	LINC02653	-	lncRNA	1469	same	5564_ID	chr10	92381900	92383368	1469	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11878	ENST00000637629.1_2	ENST00000636261.1_3	chr5	158911137	158938695	AC008703.1	-	lncRNA	chr5	158848221	158984695	AC008691.1	+	lncRNA	27558	opposite	778_ID	chr5	158911138	158938695	27558	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11892	ENST00000637996.1_1	ENST00000635999.1_1	chr6	138014204	138021552	AL356234.3	+	lncRNA	chr6	137994519	138085121	AL356234.2	+	lncRNA	7348	same	5375_ID	chr6	138014205	138021552	7348	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11894	ENST00000638002.1_1	ENST00000648684.1_1	chr1	2690148	2693019	AC242022.1	+	lncRNA	chr1	2684637	2701278	AC242022.2	+	lncRNA	2871	same	4272_ID	chr1	2690149	2693019	2871	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11903	ENST00000639627.1_3	ENST00000640420.1_2	chr12	52599339	52607367	LINC02874	-	lncRNA	chr12	52557898	52617584	LINC00592	+	lncRNA	8192	opposite	7812_ID	chr12	52599340	52607367	8028	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11914	ENST00000640770.1_1	ENST00000656189.1_3	chr2	495730	496633	AC093326.2	+	lncRNA	chr2	491006	503905	LINC01874	-	lncRNA	903	opposite	3197_ID	chr2	495731	496633	903	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11918	ENST00000641069.1_4	ENST00000438623.1_2	chr1	248720212	248726073	OR2T29	-	protein_coding	chr1	248712056	248726764	AC098483.1	+	lncRNA	5861	opposite	9388_ID	chr1	248720213	248726073	5861	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
11922	ENST00000641159.1_4	ENST00000396950.4_4	chr11	4711652	4719061	OR51C1P	-	protein_coding	chr11	4701400	4719083	OR51E2	-	protein_coding	7409	same	9413_ID	chr11	4711653	4719061	7409	*	-	Exon	TRUE	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
11933	ENST00000641439.1_4	ENST00000335397.3_2	chr11	57884213	57893002	OR9I1	-	protein_coding	chr11	57791352	57949088	OR9Q1	+	protein_coding	8789	opposite	9475_ID	chr11	57884214	57893002	8789	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11939	ENST00000641529.1_1	ENST00000380252.6_4	chr11	5405041	5414493	OR51M1	+	processed_transcript	chr11	5274419	5526835	HBG2	-	protein_coding	9452	opposite	9429_ID	chr11	5405042	5414493	9452	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11942	ENST00000641545.1_2	ENST00000435333.5_3	chr1	247780444	247785674	OR14L1P	+	protein_coding	chr1	247728940	247804156	AL606804.1	-	lncRNA	5230	opposite	9360_ID	chr1	247780445	247785674	5230	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11947	ENST00000641583.1_3	ENST00000641426.1_3	chr1	5540846	5542088	Z98259.2	-	lncRNA	chr1	5538795	5552949	Z98259.3	-	lncRNA	1242	same	12973_ID	chr1	5540847	5542088	1242	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11954	ENST00000641810.1_4	ENST00000460955.5_1	chr7	143925336	143936698	OR2A42	-	protein_coding	chr7	143892413	143977640	ARHGEF35-AS1	+	lncRNA	11362	opposite	9376_ID	chr7	143925337	143936698	11362	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11956	ENST00000641841.1_5	ENST00000460955.5_1	chr7	143954755	143961885	OR2A7	-	protein_coding	chr7	143892413	143977640	ARHGEF35-AS1	+	lncRNA	7130	opposite	9378_ID	chr7	143954756	143961885	7130	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11963	ENST00000641930.1_2	ENST00000380252.6_4	chr11	5470552	5477748	OR51I2	+	protein_coding	chr11	5274419	5526835	HBG2	-	protein_coding	7196	opposite	9424_ID	chr11	5470553	5477748	7196	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11988	ENST00000643333.1_1	ENST00000615513.4_1	chr6	36645385	36646336	DINOL	-	lncRNA	chr6	36644236	36655114	CDKN1A	+	protein_coding	951	opposite	6803_ID	chr6	36645386	36646336	951	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
11989	ENST00000643430.1_1	ENST00000418004.5_4	chr20	36899179	36902422	AL359555.2	+	lncRNA	chr20	36888550	36932734	AL359555.3	+	lncRNA	3243	same	5491_ID	chr20	36899180	36902422	3243	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12065	ENST00000648418.1_4	ENST00000338305.7_4	chr6	40473245	40491702	AL033380.1	-	lncRNA	chr6	40359329	40555103	LRFN2	-	protein_coding	18457	same	4572_ID	chr6	40473246	40491702	18457	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12104	ENST00000648920.1_1	ENST00000661256.1_3	chr3	66844464	66847345	AC098969.1	+	lncRNA	chr3	66830499	66874863	AC098969.2	-	lncRNA	2881	opposite	3350_ID	chr3	66844465	66847345	2881	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12165	ENST00000650170.1_3	ENST00000476882.1_1	chr1	78488248	78490545	AC103591.4	-	lncRNA	chr1	78445225	78558488	GIPC2	+	processed_transcript	2297	opposite	3452_ID	chr1	78488249	78490545	2297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12181	ENST00000650562.1_3	ENST00000648211.1_1	chr8	86863674	86873791	LINC02849	-	lncRNA	chr8	86845605	86920831	AC100801.1	+	retained_intron	10117	opposite	7807_ID	chr8	86863675	86873791	10117	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12224	ENST00000651321.1_3	ENST00000594900.1_5	chr19	52274563	52276422	AC018755.5	-	lncRNA	chr19	52250128	52307363	FPR1	-	protein_coding	1859	same	1660_ID	chr19	52274564	52276422	1859	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12230	ENST00000651525.1_3	ENST00000605259.2_2	chr9	44997999	44998719	AL627230.3	-	protein_coding	chr9	44997776	44999352	AL391987.2	+	protein_coding	720	opposite	5849_ID	chr9	44998000	44998719	720	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	2
12232	ENST00000651573.1_3	ENST00000663633.1_3	chr5	73554513	73617064	LINC01335	-	lncRNA	chr5	73407514	73832649	LINC01331	-	lncRNA	62567	same	7635_ID	chr5	73554514	73617064	62551	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12244	ENST00000651868.1_1	ENST00000316048.2_4	chr12	14958041	14961111	AC007655.2	+	lncRNA	chr12	14957583	14967116	SMCO3	-	protein_coding	3070	opposite	625_ID	chr12	14958042	14961111	3070	*	+	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	2	2
12250	ENST00000652041.1_4	ENST00000556646.1_3	chr14	70989078	71001732	ADAM20	-	protein_coding	chr14	70892528	71014181	AL357153.2	-	lncRNA	12658	same	4347_ID	chr14	70989079	71001732	12654	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12271	ENST00000652430.2_2	ENST00000653335.1_1	chr2	239619864	239631184	AC113618.2	-	lncRNA	chr2	239463181	239649490	LINC01937	+	lncRNA	11320	opposite	3859_ID	chr2	239619865	239631184	11320	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12274	ENST00000652480.1_2	ENST00000670438.1_1	chr18	74327116	74329602	AC034110.1	-	lncRNA	chr18	74240737	74382020	LINC00683	+	lncRNA	2486	opposite	2249_ID	chr18	74327117	74329602	2486	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12277	ENST00000652517.1_1	ENST00000593802.1_5	chr19	22701215	22703382	AC011467.6	+	lncRNA	chr19	22586235	22715287	ZNF98	-	protein_coding	2167	opposite	1229_ID	chr19	22701216	22703382	2167	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12305	ENST00000653014.1_1	ENST00000463155.5_3	chr1	241803856	241805137	AL133390.1	+	lncRNA	chr1	241757513	241840678	OPN3	-	processed_transcript	1281	opposite	4852_ID	chr1	241803857	241805137	1281	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12312	ENST00000653126.1_3	ENST00000371497.10_4	chr20	51753831	51757708	AL391097.3	-	lncRNA	chr20	51588896	52111869	TSHZ2	+	protein_coding	3877	opposite	5571_ID	chr20	51753832	51757708	3877	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12313	ENST00000653174.1_1	ENST00000244217.6_4	chr2	71340006	71344536	AC007881.4	+	lncRNA	chr2	71336816	71357359	MCEE	-	protein_coding	4530	opposite	664_ID	chr2	71340007	71344536	4530	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12324	ENST00000653521.1_3	ENST00000409911.5_4	chr2	77437712	77554229	AC013716.1	-	lncRNA	chr2	76974844	77749465	LRRTM4	-	protein_coding	116517	same	1461_ID	chr2	77437713	77554229	116517	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12325	ENST00000653530.1_3	ENST00000649869.1_1	chr16	11384425	11388763	AC009121.4	+	lncRNA	chr16	11343483	11475519	RMI2	+	processed_transcript	4338	same	891_ID	chr16	11384426	11388763	4338	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12330	ENST00000653746.1_1	ENST00000637419.1_3	chr16	85260808	85342782	AC092275.1	+	lncRNA	chr16	85203130	85667738	GSE1	+	protein_coding	81974	same	3070_ID	chr16	85260809	85342782	81974	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12331	ENST00000653751.1_3	ENST00000637419.1_3	chr16	85378876	85386567	AC092377.1	-	lncRNA	chr16	85203130	85667738	GSE1	+	protein_coding	96222	opposite	3085_ID	chr16	85378877	85386567	7691	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12332	ENST00000653767.1_3	ENST00000264498.8_2	chr4	123800932	123806960	AC021205.3	-	lncRNA	chr4	123747862	123819391	FGF2	+	protein_coding	6028	opposite	1783_ID	chr4	123800933	123806960	6028	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12347	ENST00000654272.1_1	ENST00000448713.5_3	chr2	47452919	47467144	AC073283.2	+	lncRNA	chr2	47419543	47572128	EPCAM-DT	-	lncRNA	15106	opposite	2519_ID	chr2	47452920	47467144	14225	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12350	ENST00000654321.1_1	ENST00000651810.1_1	chr5	41870028	41872321	OXCT1-AS1	+	lncRNA	chr5	41869076	41880312	AC034222.2	+	lncRNA	2315	same	9485_ID	chr5	41870029	41872321	2293	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12363	ENST00000654745.1_3	ENST00000424155.6_2	chr15	79623932	79629619	AC027811.1	-	lncRNA	chr15	79603486	79719774	TMED3	+	protein_coding	7224	opposite	2241_ID	chr15	79623933	79629619	5687	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12373	ENST00000655007.1_1	ENST00000670890.1_3	chr10	10442302	10446166	AL583859.3	+	lncRNA	chr10	10411771	10504243	CELF2-DT	-	lncRNA	3864	opposite	5731_ID	chr10	10442303	10446166	3864	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12408	ENST00000655603.1_3	ENST00000551505.4_4	chr12	107072360	107077272	AC079385.2	-	lncRNA	chr12	106889735	107168696	AC079385.1	-	lncRNA	6125	same	2657_ID	chr12	107072361	107077272	4912	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12410	ENST00000655674.1_3	ENST00000258874.4_4	chr15	80186843	80189037	AC015871.6	-	lncRNA	chr15	80135888	80189356	MTHFS	-	protein_coding	2194	same	1493_ID	chr15	80186844	80189037	2194	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12426	ENST00000655973.1_3	ENST00000549066.1_1	chr12	102348769	102356192	AC079907.2	-	lncRNA	chr12	102302091	102405908	DRAM1	+	protein_coding	7423	opposite	2684_ID	chr12	102348770	102356192	7423	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12435	ENST00000656091.1_3	ENST00000517655.1_1	chr8	96219103	96228747	LINC01298	-	lncRNA	chr8	96216683	96444894	C8orf37-AS1	+	lncRNA	9650	opposite	7628_ID	chr8	96219104	96228747	9644	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12471	ENST00000656923.1_1	ENST00000534291.1_1	chr11	3532788	3542116	AC127526.4	+	lncRNA	chr11	3490548	3552558	AC127526.1	+	lncRNA	9328	same	4041_ID	chr11	3532789	3542116	9328	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12492	ENST00000657309.1_1	ENST00000549930.1_3	chr12	93484255	93502390	AC138123.2	+	lncRNA	chr12	93397533	93609455	AC138123.1	-	lncRNA	18150	opposite	4178_ID	chr12	93484256	93502390	18135	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12516	ENST00000657831.1_3	ENST00000662551.1_1	chr15	48248717	48280241	AC092078.3	-	lncRNA	chr15	48104925	48342697	AC092078.2	+	lncRNA	31524	opposite	3042_ID	chr15	48248718	48280241	31524	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12521	ENST00000657907.1_3	ENST00000487238.5_2	chr3	156952368	156952938	AC092944.3	-	lncRNA	chr3	156893057	157099054	AC092944.1	+	lncRNA	570	opposite	3176_ID	chr3	156952369	156952938	570	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12533	ENST00000658061.1_3	ENST00000607322.1_3	chr9	99984883	99997299	AL590705.2	+	lncRNA	chr9	99962756	100000982	AL590705.1	-	lncRNA	12416	opposite	5779_ID	chr9	99984884	99997299	12416	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12540	ENST00000658237.1_1	ENST00000503152.2_4	chr5	43041943	43054705	AC025171.2	+	lncRNA	chr5	43014832	43067554	AC025171.1	-	lncRNA	13029	opposite	2059_ID	chr5	43041944	43054705	12762	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12541	ENST00000658245.1_3	ENST00000607862.5_1	chr13	78572043	78627733	LINC00446	+	lncRNA	chr13	78493823	79158297	OBI1-AS1	+	lncRNA	55696	same	7551_ID	chr13	78572044	78627733	55690	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12556	ENST00000658498.1_3	ENST00000655745.1_1	chr10	1247345	1254329	AL392083.2	-	lncRNA	chr10	1205751	1331621	LINC00200	+	lncRNA	6984	opposite	5600_ID	chr10	1247346	1254329	6984	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12581	ENST00000658879.1_1	ENST00000554043.2_4	chr14	77551031	77552320	AC007686.5	+	lncRNA	chr14	77514514	77552800	AC007686.2	-	lncRNA	1289	opposite	637_ID	chr14	77551032	77552320	1289	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12584	ENST00000658908.1_3	ENST00000670438.1_1	chr18	74334100	74350987	LINC01927	-	lncRNA	chr18	74240737	74382020	LINC00683	+	lncRNA	16895	opposite	7701_ID	chr18	74334101	74350987	16887	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12595	ENST00000659117.1_3	ENST00000641650.1_1	chr3	125518729	125519459	AC092902.6	-	lncRNA	chr3	125485358	125571779	AC092902.4	+	lncRNA	730	opposite	3169_ID	chr3	125518730	125519459	730	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12601	ENST00000659225.1_3	ENST00000534291.1_1	chr11	3496509	3498295	AC127526.5	-	lncRNA	chr11	3490548	3552558	AC127526.1	+	lncRNA	1786	opposite	4043_ID	chr11	3496510	3498295	1786	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12611	ENST00000659389.1_1	ENST00000660399.1_1	chr6	134666825	134670475	Z84486.1	+	lncRNA	chr6	134664444	134825405	LINC01010	+	lncRNA	3650	same	12949_ID	chr6	134666826	134670475	3650	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12614	ENST00000659408.1_3	ENST00000409911.5_4	chr2	77121019	77124373	AC079117.1	-	lncRNA	chr2	76974844	77749465	LRRTM4	-	protein_coding	3354	same	2620_ID	chr2	77121020	77124373	3354	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12617	ENST00000659516.1_1	ENST00000659900.1_1	chr12	9500625	9501864	AC009533.4	+	lncRNA	chr12	9499623	9503543	AC009533.3	+	lncRNA	1239	same	969_ID	chr12	9500626	9501864	1239	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12634	ENST00000660008.1_3	ENST00000554043.2_4	chr14	77535511	77542537	LINC02289	-	lncRNA	chr14	77514514	77552800	AC007686.2	-	lncRNA	7224	same	7756_ID	chr14	77535512	77542537	7026	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12652	ENST00000660274.1_1	ENST00000666421.1_1	chr2	208082255	208083869	AC007879.5	+	lncRNA	chr2	208030843	208113116	MYOSLID	+	lncRNA	1614	same	660_ID	chr2	208082256	208083869	1614	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12667	ENST00000660775.1_1	ENST00000586572.1_7	chr19	2721707	2724515	AC006538.4	+	lncRNA	chr19	2717766	2740046	AC006538.2	-	protein_coding	2808	opposite	478_ID	chr19	2721708	2724515	2808	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12682	ENST00000661000.1_1	ENST00000669756.1_1	chr6	26986713	26988059	AL590062.1	-	lncRNA	chr6	26924710	26991738	LINC00240	+	lncRNA	1346	opposite	5748_ID	chr6	26986714	26988059	1346	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12700	ENST00000661379.1_3	ENST00000669131.1_1	chr2	105028603	105030653	LINC01831	-	lncRNA	chr2	105022928	105033178	AC068535.1	+	lncRNA	2050	opposite	7687_ID	chr2	105028604	105030653	2050	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12742	ENST00000662449.1_1	ENST00000671059.1_3	chr1	91301216	91315017	LINC02788	+	lncRNA	chr1	91234642	91317085	LINC02609	-	lncRNA	13813	opposite	7799_ID	chr1	91301217	91315017	13801	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12755	ENST00000662658.1_1	ENST00000503152.2_4	chr5	43018530	43024780	AC025171.3	+	lncRNA	chr5	43014832	43067554	AC025171.1	-	lncRNA	6250	opposite	2060_ID	chr5	43018531	43024780	6250	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12816	ENST00000663937.1_3	ENST00000432328.2_1	chr12	47599682	47610235	PCED1B-AS1	-	lncRNA	chr12	47473385	47630445	PCED1B	+	protein_coding	10559	opposite	9511_ID	chr12	47599683	47610235	10553	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12822	ENST00000664048.1_3	ENST00000549419.6_4	chr12	70632893	70636210	AC092881.2	+	lncRNA	chr12	70295697	70637146	PRANCR	-	lncRNA	3317	opposite	3164_ID	chr12	70632894	70636210	3317	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12824	ENST00000664062.1_3	ENST00000649900.1_1	chr4	3050820	3076265	HTT-AS	-	lncRNA	chr4	3043288	3088749	HTT	+	processed_transcript	25445	opposite	7316_ID	chr4	3050821	3076265	25445	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12866	ENST00000664961.1_4	ENST00000526274.2_3	chr11	118591812	118600121	AP002954.2	-	lncRNA	chr11	118575316	118620973	AP002954.1	+	lncRNA	8309	opposite	6219_ID	chr11	118591813	118600121	8309	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12885	ENST00000665173.1_1	ENST00000549930.1_3	chr12	93567261	93576075	LINC02412	+	lncRNA	chr12	93397533	93609455	AC138123.1	-	lncRNA	8830	opposite	7773_ID	chr12	93567262	93576075	8814	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12887	ENST00000665257.1_3	ENST00000394243.5_1	chr5	150000568	150006341	AC008453.2	-	lncRNA	chr5	149980641	150033794	SYNPO	+	protein_coding	5773	opposite	733_ID	chr5	150000569	150006341	5773	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12912	ENST00000665945.1_4	ENST00000607862.5_1	chr13	78555198	78572016	LINC01069	-	lncRNA	chr13	78493823	79158297	OBI1-AS1	+	lncRNA	18065	opposite	7598_ID	chr13	78555199	78572016	16818	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12914	ENST00000666082.1_3	ENST00000310455.4_4	chr8	8998936	9003013	AC022784.5	+	lncRNA	chr8	8993764	9008168	PPP1R3B	-	protein_coding	4080	opposite	1906_ID	chr8	8998937	9003013	4077	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
12917	ENST00000666130.1_3	ENST00000539305.1_1	chr11	115624606	115631024	LINC00900	-	lncRNA	chr11	115530375	115713864	LINC02698	+	lncRNA	6758	opposite	7579_ID	chr11	115624607	115631024	6418	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12924	ENST00000666338.1_3	ENST00000657578.1_1	chr5	87987613	87990858	AC008525.1	-	lncRNA	chr5	87971850	88074905	MEF2C-AS2	+	lncRNA	3285	opposite	738_ID	chr5	87987614	87990858	3245	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12926	ENST00000666363.1_1	ENST00000546414.1_3	chr12	116316552	116323772	AC012157.3	+	lncRNA	chr12	116248163	116323942	LINC02463	-	lncRNA	7220	opposite	1338_ID	chr12	116316553	116323772	7220	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12943	ENST00000666674.1_3	ENST00000452946.1_3	chr22	37748229	37751042	Z94160.1	-	lncRNA	chr22	37736684	37823480	ELFN2	-	lncRNA	2813	same	12956_ID	chr22	37748230	37751042	2813	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12971	ENST00000667239.1_1	ENST00000518973.1_3	chr8	138864446	139032116	AC046195.2	+	lncRNA	chr8	138821686	139095813	AC046195.1	-	lncRNA	167670	opposite	2307_ID	chr8	138864447	139032116	167670	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
12994	ENST00000667770.1_1	ENST00000581541.1_3	chr18	71615114	71625209	AC090125.2	+	lncRNA	chr18	71581639	71701396	AC090125.1	-	lncRNA	10095	opposite	2872_ID	chr18	71615115	71625209	10095	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
13024	ENST00000668329.1_1	ENST00000327381.7_2	chr8	56074005	56077007	AC022679.1	+	lncRNA	chr8	56014587	56454613	XKR4	+	protein_coding	3282	same	1897_ID	chr8	56074006	56077007	3002	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
13053	ENST00000669039.1_1	ENST00000562167.1_3	chr19	32079064	32084692	AC011525.2	+	lncRNA	chr19	32078945	32086626	AC011525.1	-	lncRNA	5628	opposite	1266_ID	chr19	32079065	32084692	5628	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
13079	ENST00000669580.1_3	ENST00000392509.6_1	chr12	120925881	120933735	NRAV	-	lncRNA	chr12	120907652	120936296	DYNLL1	+	protein_coding	7868	opposite	9302_ID	chr12	120925882	120933735	7854	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
13081	ENST00000669594.1_3	ENST00000477171.1_1	chr3	151963050	151985487	MBNL1-AS1	-	lncRNA	chr3	151961616	152017899	MBNL1	+	processed_transcript	24296	opposite	7925_ID	chr3	151963051	151985487	22437	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
13087	ENST00000669685.1_1	ENST00000663633.1_3	chr5	73617157	73637061	LINC01333	+	lncRNA	chr5	73407514	73832649	LINC01331	-	lncRNA	19944	opposite	7634_ID	chr5	73617158	73637061	19904	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
13091	ENST00000669753.1_3	ENST00000528445.1_3	chr11	45419139	45434295	AC018716.2	-	lncRNA	chr11	45408765	45535352	AC103855.3	-	lncRNA	15156	same	1656_ID	chr11	45419140	45434295	15156	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
13102	ENST00000670033.1_4	ENST00000435810.1_1	chr6	166186543	166188709	AL590302.1	-	lncRNA	chr6	166167676	166189268	AL590302.2	+	lncRNA	2166	opposite	5759_ID	chr6	166186544	166188709	2166	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
13127	ENST00000670736.1_3	ENST00000551082.2_1	chr12	76983255	76994424	AC107032.3	-	lncRNA	chr12	76956073	77009347	AC107032.2	+	lncRNA	11169	opposite	3680_ID	chr12	76983256	76994424	11169	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
13130	ENST00000670816.1_1	ENST00000522570.1_1	chr8	24857950	24860954	AC107373.3	+	lncRNA	chr8	24849515	24867292	AC107373.1	+	lncRNA	3004	same	3692_ID	chr8	24857951	24860954	3004	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
13133	ENST00000670874.1_1	ENST00000539305.1_1	chr11	115605565	115627644	AP002991.2	+	lncRNA	chr11	115530375	115713864	LINC02698	+	lncRNA	22079	same	6224_ID	chr11	115605566	115627644	22079	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
13137	ENST00000670947.1_1	ENST00000383263.7_3	chr15	34277606	34280469	AC009268.3	+	lncRNA	chr15	34260697	34359659	CHRM5	+	protein_coding	2863	same	934_ID	chr15	34277607	34280469	2863	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
13152	ENST00000671279.1_1	ENST00000663345.1_3	chr3	165245	175183	AC066595.2	+	lncRNA	chr3	151389	238404	CHL1-AS2	-	lncRNA	9938	opposite	2368_ID	chr3	165246	175183	9938	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
13153	ENST00000671297.1_1	ENST00000669249.1_3	chr2	6789837	6791029	AC097517.1	+	lncRNA	chr2	6789228	6791236	MIR7515HG	-	lncRNA	1192	opposite	3324_ID	chr2	6789838	6791029	1192	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
13160	ENST00000671400.1_1	ENST00000496027.5_4	chr3	42760892	42764628	AC006059.4	+	lncRNA	chr3	42740199	42774414	AC006059.3	-	lncRNA	3736	opposite	406_ID	chr3	42760893	42764628	3736	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
13167	ENST00000671443.1_3	ENST00000663561.1_3	chr21	40229462	40230785	AP001042.3	+	lncRNA	chr21	40184801	40277347	AP001042.1	-	lncRNA	1323	opposite	6075_ID	chr21	40229463	40230785	1323	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
85100	ENST00000243578.8_4	ENST00000539627.5_1	chr19	41860321	41870054	B9D2	-	protein_coding	chr19	41856815	41889988	TMEM91	+	protein_coding	9749	opposite	6391_ID	chr19	41860322	41870054	9733	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
23110	ENST00000280684.3_1	ENST00000662877.1_3	chr12	4918341	4922578	KCNA6	+	protein_coding	chr12	4913695	4939913	AC005833.2	-	lncRNA	4237	opposite	7402_ID	chr12	4918342	4922578	4237	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
24610	ENST00000286688.6_4	ENST00000517655.1_1	chr8	96257140	96281429	C8orf37	-	protein_coding	chr8	96216683	96444894	C8orf37-AS1	+	lncRNA	24289	opposite	6521_ID	chr8	96257141	96281429	24289	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
52210	ENST00000327047.6_4	ENST00000469268.1_1	chr3	150644353	150690514	CLRN1	-	protein_coding	chr3	150608422	150756605	AC020636.1	+	lncRNA	46565	opposite	6667_ID	chr3	150644354	150690514	46161	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
66410	ENST00000345094.7_1	ENST00000468186.5_4	chr3	9404735	9428475	THUMPD3	+	protein_coding	chr3	9391372	9438338	THUMPD3-AS1	-	lncRNA	23821	opposite	12690_ID	chr3	9404736	9428475	23740	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
78010	ENST00000362189.1	ENST00000626538.2_4	chr1	205417429	205417526	MIR135B	-	miRNA	chr1	205404012	205425874	BLACAT1	-	protein_coding	97	same	8090_ID	chr1	205417430	205417526	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
79810	ENST00000362232.1	ENST00000510655.1_3	chr4	113569518	113569586	MIR302C	-	miRNA	chr4	113567631	113571207	MIR302CHG	-	lncRNA	68	same	8220_ID	chr4	113569519	113569586	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
80610	ENST00000362263.1	ENST00000602602.1	chr9	96941115	96941202	MIRLET7D	+	miRNA	chr9	96938883	96966850	MIRLET7DHG	-	lincRNA	87	opposite	9132_ID	chr9	96941116	96941202	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
81010	ENST00000362275.1	ENST00000510655.1_3	chr4	113569159	113569227	MIR302D	-	miRNA	chr4	113567631	113571207	MIR302CHG	-	lncRNA	68	same	8223_ID	chr4	113569160	113569227	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
81810	ENST00000362299.1	ENST00000510655.1_3	chr4	113569029	113569097	MIR367	-	miRNA	chr4	113567631	113571207	MIR302CHG	-	lncRNA	68	same	8378_ID	chr4	113569030	113569097	68	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
95410	ENST00000363217.1	ENST00000413987.1_2	chr1	28835070	28835274	SNORA73B	+	snoRNA	chr1	28832491	28837404	SNHG3	+	lncRNA	204	same	12206_ID	chr1	28835071	28835274	204	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
112410	ENST00000364072.1	ENST00000413035.5_3	chr1	201702533	201702633	RNU6-501P	+	snRNA	chr1	201657386	201798687	IPO9-AS1	-	lncRNA	100	opposite	11287_ID	chr1	201702534	201702633	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
121310	ENST00000364571.1	ENST00000409690.5_6	chr3	196435729	196435835	RNU6-646P	-	snRNA	chr3	196433147	196439121	CEP19	-	protein_coding	106	same	11404_ID	chr3	196435730	196435835	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
121510	ENST00000364574.1	ENST00000355622.8_3	chr9	120470273	120470380	RNU6-1082P	-	snRNA	chr9	120466680	120487013	TLR4	+	protein_coding	107	opposite	10818_ID	chr9	120470274	120470380	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
129210	ENST00000364945.1	ENST00000658239.1_3	chr8	9228599	9228705	RNU6-526P	-	snRNA	chr8	9225407	9232678	AC021242.2	-	lncRNA	106	same	11311_ID	chr8	9228600	9228705	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
15181	ENST00000374160.7_3	ENST00000430438.1_3	chr10	50117527	50122277	LRRC18	-	protein_coding	chr10	50091999	50143258	AC060234.3	-	lncRNA	4750	same	7857_ID	chr10	50117528	50122277	4750	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
18001	ENST00000384270.1	ENST00000507997.1_1	chr5	95545824	95545931	RNU6-524P	-	snRNA	chr5	95385818	95551223	MIR583HG	+	lncRNA	107	opposite	11309_ID	chr5	95545825	95545931	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
19921	ENST00000384817.1	ENST00000446139.1_3	chr2	56210101	56210211	MIR217	-	miRNA	chr2	56190325	56274461	MIR217HG	-	lncRNA	110	same	8187_ID	chr2	56210102	56210211	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
20001	ENST00000384825.1	ENST00000392485.2_3	chr17	74732531	74732630	MIR636	-	miRNA	chr17	74730196	74733415	SRSF2	-	protein_coding	99	same	9041_ID	chr17	74732532	74732630	99	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
20191	ENST00000384846.1	ENST00000507997.1_1	chr5	95414841	95414916	MIR583	+	miRNA	chr5	95385818	95551223	MIR583HG	+	lncRNA	75	same	8986_ID	chr5	95414842	95414916	75	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
20491	ENST00000384879.1	ENST00000404327.3_3	chr2	241395417	241395506	MIR149	+	miRNA	chr2	241388834	241396131	AC110619.1	-	lncRNA	89	opposite	8104_ID	chr2	241395418	241395506	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
21451	ENST00000385063.1	ENST00000446139.1_3	chr2	56216084	56216194	MIR216A	-	miRNA	chr2	56190325	56274461	MIR217HG	-	lncRNA	110	same	8183_ID	chr2	56216085	56216194	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
21841	ENST00000385191.1	ENST00000493616.1_3	chr3	52328234	52328324	MIR135A1	-	miRNA	chr3	52322598	52333040	GLYCTK-AS1	-	lncRNA	90	same	8086_ID	chr3	52328235	52328324	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
21861	ENST00000385192.1	ENST00000510655.1_3	chr4	113569338	113569407	MIR302A	-	miRNA	chr4	113567631	113571207	MIR302CHG	-	lncRNA	69	same	8217_ID	chr4	113569339	113569407	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
22991	ENST00000390185.1	ENST00000559553.1_3	chr15	45725247	45725327	MIR147B	+	miRNA	chr15	45722849	45734006	AC025580.1	-	lncRNA	80	opposite	8100_ID	chr15	45725248	45725327	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
23001	ENST00000390186.2	ENST00000446139.1_3	chr2	56227848	56227930	MIR216B	-	miRNA	chr2	56190325	56274461	MIR217HG	-	lncRNA	82	same	8184_ID	chr2	56227849	56227930	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
24401	ENST00000391180.1	ENST00000654246.1_3	chr7	78972581	78972688	RNU6-530P	-	snRNA	chr7	78965095	78986910	AC074024.1	-	lncRNA	107	same	11314_ID	chr7	78972582	78972688	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
26571	ENST00000408101.1	ENST00000413035.5_3	chr1	201777738	201777830	MIR1231	+	miRNA	chr1	201657386	201798687	IPO9-AS1	-	lncRNA	92	opposite	7989_ID	chr1	201777739	201777830	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
27141	ENST00000408272.1	ENST00000438633.1_1	chr2	221056598	221056677	AC114765.3	+	miRNA	chr2	220992266	221077212	AC093083.1	+	lncRNA	79	same	3873_ID	chr2	221056599	221056677	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
27251	ENST00000408295.1	ENST00000490006.6_1	chr1	87616980	87617128	AL139139.1	+	miRNA	chr1	87595456	87634881	LINC01140	+	lncRNA	148	same	5013_ID	chr1	87616981	87617128	148	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
28091	ENST00000408503.1	ENST00000658072.1_3	chr5	153726665	153726807	MIR1294	+	miRNA	chr5	153705127	153825379	SAP30L-AS1	-	lncRNA	142	opposite	8060_ID	chr5	153726666	153726807	142	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
29071	ENST00000408726.1	ENST00000409590.1_1	chr2	59468755	59468837	AC007131.3	-	miRNA	chr2	59444842	59506535	LINC01793	+	lncRNA	82	opposite	513_ID	chr2	59468756	59468837	82	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
29151	ENST00000408732.1	ENST00000634947.1_3	chr3	21179754	21179833	AC104441.1	-	miRNA	chr3	21048221	21267797	AC099753.1	-	lncRNA	79	same	3534_ID	chr3	21179755	21179833	79	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
33161	ENST00000412178.1_3	ENST00000619859.1_2	chr20	30155509	30161066	HM13-AS1	-	lncRNA	chr20	30147418	30165726	HM13	+	protein_coding	5557	opposite	7242_ID	chr20	30155510	30161066	5557	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
33931	ENST00000414261.1_3	ENST00000498234.2_1	chr22	40768667	40784294	SGSM3-AS1	-	lncRNA	chr22	40761034	40786467	ADSL	+	protein_coding	15627	opposite	12054_ID	chr22	40768668	40784294	15627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
34331	ENST00000415082.1_3	ENST00000400419.2_4	chr13	44720605	44732358	SMIM2-IT1	-	lncRNA	chr13	44717285	44735393	SMIM2	-	protein_coding	11753	same	12130_ID	chr13	44720606	44732358	11753	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
34801	ENST00000416341.1_1	ENST00000421324.4_1	chr10	80112353	80115857	AC010163.2	+	lncRNA	chr10	79998011	80434866	AC012560.1	+	lncRNA	3504	same	1024_ID	chr10	80112354	80115857	3504	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
36271	ENST00000420382.1_1	ENST00000512280.1_3	chr1	151738184	151738865	AL589765.2	+	lncRNA	chr1	151735859	151741977	AL589765.4	-	lncRNA	681	opposite	5736_ID	chr1	151738185	151738865	681	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
36351	ENST00000420664.1_3	ENST00000421345.5_3	chr7	116605899	116607526	AC106873.1	-	lncRNA	chr7	116594444	116759773	AC106873.8	+	protein_coding	1627	opposite	3669_ID	chr7	116605900	116607526	1627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
36581	ENST00000421318.1_1	ENST00000432484.6_3	chr6	75352099	75361718	AL356277.2	+	lncRNA	chr6	75239963	75443995	AL356277.3	-	lncRNA	9619	opposite	5379_ID	chr6	75352100	75361718	9619	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
36811	ENST00000421759.1_1	ENST00000496939.1_3	chr2	47294960	47298343	AC073283.1	+	lncRNA	chr2	47272676	47335941	STPG4	-	processed_transcript	3383	opposite	2518_ID	chr2	47294961	47298343	3383	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
36891	ENST00000421907.1_3	ENST00000456163.2_2	chr2	217731054	217732536	AC007557.4	-	lncRNA	chr2	217724670	217736366	LINC01921	+	lncRNA	1482	opposite	603_ID	chr2	217731055	217732536	1482	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
38761	ENST00000427401.9_4	ENST00000653011.1_1	chr19	20720797	20748587	ZNF737	-	protein_coding	chr19	20655791	20753901	AC008554.1	+	lncRNA	29985	opposite	13068_ID	chr19	20720798	20748587	27790	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
39431	ENST00000429443.1_3	ENST00000413035.5_3	chr1	201692421	201706634	AL645504.1	-	lncRNA	chr1	201657386	201798687	IPO9-AS1	-	lncRNA	14213	same	5856_ID	chr1	201692422	201706634	14213	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
39711	ENST00000430222.1_1	ENST00000415809.1_3	chr11	3875841	3876629	AC090587.1	+	lncRNA	chr11	3875547	3876739	STIM1-AS1	-	lncRNA	788	opposite	2915_ID	chr11	3875842	3876629	788	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
40051	ENST00000430970.1_3	ENST00000625908.1_5	chr10	127407339	127407934	AL158835.2	-	lncRNA	chr10	127395984	127438094	AL158835.3	-	lncRNA	595	same	5119_ID	chr10	127407340	127407934	595	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
40881	ENST00000433378.1_1	ENST00000430327.6_4	chr21	42552023	42552553	BACE2-IT1	+	lncRNA	chr21	42548248	42558700	PLAC4	-	lncRNA	530	opposite	6395_ID	chr21	42552024	42552553	530	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
41191	ENST00000434440.1_1	ENST00000421324.4_1	chr10	80053598	80060760	AC010163.1	+	lncRNA	chr10	79998011	80434866	AC012560.1	+	lncRNA	7162	same	1022_ID	chr10	80053599	80060760	7162	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
41781	ENST00000435953.2_1	ENST00000629746.2_4	chr17	19360392	19361712	AC004448.1	+	lncRNA	chr17	19351491	19396304	AC004448.2	-	lncRNA	1320	opposite	126_ID	chr17	19360393	19361712	1320	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
41891	ENST00000436286.2_3	ENST00000606932.1_3	chr20	52014198	52029448	AL354993.1	-	lncRNA	chr20	51872517	52103813	AL109930.1	-	lncRNA	15250	same	5309_ID	chr20	52014199	52029448	15250	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
43871	ENST00000441845.1_1	ENST00000626804.2_5	chr6	53863687	53871950	MLIP-IT1	+	lncRNA	chr6	53843346	53912187	MLIP-AS1	-	lncRNA	8263	opposite	9145_ID	chr6	53863688	53871950	8263	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
43941	ENST00000442008.2_3	ENST00000651240.1_3	chr10	5566938	5567705	AL732437.1	-	lncRNA	chr10	5559008	5568008	CALML3-AS1	-	lncRNA	767	same	5907_ID	chr10	5566939	5567705	767	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
44311	ENST00000442828.2_1	ENST00000470649.1_6	chr17	15943785	15944587	AC002553.1	+	lncRNA	chr17	15928401	15948329	TTC19	+	protein_coding	802	same	70_ID	chr17	15943786	15944587	802	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
45661	ENST00000447056.1_3	ENST00000448412.2_1	chr1	193653375	193657559	AL357793.2	-	lncRNA	chr1	193648023	193696165	AL357793.1	+	lncRNA	4184	opposite	5433_ID	chr1	193653376	193657559	4184	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
46371	ENST00000449007.1_3	ENST00000666924.1_3	chr4	77679706	77723117	AC107072.1	-	lncRNA	chr4	77630005	77723564	SHROOM3-AS1	-	lncRNA	43411	same	3682_ID	chr4	77679707	77723117	43411	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
47091	ENST00000451275.1_3	ENST00000594684.1_1	chr19	58208734	58220562	ZNF154	-	nonsense_mediated_decay	chr19	58193412	58264943	AC003006.1	+	protein_coding	11828	opposite	13021_ID	chr19	58208735	58220562	11828	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
47351	ENST00000451711.1_1	ENST00000456163.2_2	chr2	217732734	217733879	AC007557.1	+	lncRNA	chr2	217724670	217736366	LINC01921	+	lncRNA	1145	same	598_ID	chr2	217732735	217733879	1145	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
48351	ENST00000454444.1_1	ENST00000417096.5_3	chr2	208091672	208093032	AC007879.2	+	lncRNA	chr2	208051440	208100607	AC007879.3	-	lncRNA	1360	opposite	655_ID	chr2	208091673	208093032	1360	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
50211	ENST00000458862.1	ENST00000255198.3_7	chr5	76376258	76376396	SNORA47	-	snoRNA	chr5	76367896	76383110	ZBED3	-	protein_coding	138	same	12177_ID	chr5	76376259	76376396	138	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
55461	ENST00000486087.2	ENST00000658072.1_3	chr5	153728987	153729283	RN7SL655P	+	misc_RNA	chr5	153705127	153825379	SAP30L-AS1	-	lncRNA	296	opposite	10340_ID	chr5	153728988	153729283	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
56931	ENST00000497366.1_3	ENST00000483664.5_2	chr7	150076942	150080973	ZNF775-AS1	-	lncRNA	chr7	150076417	150107685	AC073111.2	+	lncRNA	4031	opposite	13070_ID	chr7	150076943	150080973	4031	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
57531	ENST00000501405.2_1	ENST00000660106.1_3	chr5	101941338	101941901	AC099487.1	+	lncRNA	chr5	101939923	101972138	LINC00491	-	lncRNA	563	opposite	3361_ID	chr5	101941339	101941901	563	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
59861	ENST00000509530.1_3	ENST00000507058.1_1	chr5	134460069	134466939	AC008406.1	-	lncRNA	chr5	134456215	134475371	AC008406.2	+	lncRNA	6870	opposite	723_ID	chr5	134460070	134466939	6870	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
61241	ENST00000513645.2_3	ENST00000508959.1_3	chr4	113952442	113955707	AC093879.1	-	lncRNA	chr4	113900745	113993118	ANK2-AS1	-	lncRNA	3265	same	3255_ID	chr4	113952443	113955707	3265	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
61461	ENST00000514254.3_4	ENST00000542348.5_3	chr12	124410007	124419531	DNAH10OS	-	lncRNA	chr12	124403206	124428042	CCDC92	-	processed_transcript	9524	same	6822_ID	chr12	124410008	124419531	9524	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
62011	ENST00000515897.1	ENST00000569459.1_3	chr16	30494455	30494516	RNU7-61P	-	snRNA	chr16	30488500	30500674	AC116348.3	-	lncRNA	61	same	11797_ID	chr16	30494456	30494516	61	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
64461	ENST00000516591.1	ENST00000556617.5_3	chr14	51989581	51989685	RNU6-1291P	+	snRNA	chr14	51921229	52066670	FRMD6-AS2	-	lncRNA	104	opposite	10985_ID	chr14	51989582	51989685	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
64501	ENST00000516601.1	ENST00000490386.1_1	chr3	45075965	45076080	RNU5B-3P	-	snRNA	chr3	45043039	45077563	CLEC3B	+	processed_transcript	115	opposite	10741_ID	chr3	45075966	45076080	115	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
64811	ENST00000516702.1	ENST00000440609.1_3	chr2	199431368	199431453	AC019330.2	-	miRNA	chr2	199417918	199637080	AC019330.1	-	lncRNA	85	same	1704_ID	chr2	199431369	199431453	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
67031	ENST00000517272.1	ENST00000660701.1_3	chr3	8406214	8406334	RNU4ATAC17P	-	snRNA	chr3	8401029	8408113	AC023481.1	-	lncRNA	120	same	10726_ID	chr3	8406215	8406334	120	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
68131	ENST00000520185.1_1	ENST00000517623.1_3	chr8	39771747	39773240	AC007991.2	+	lncRNA	chr8	39761293	39852767	AC007991.3	-	lncRNA	1493	opposite	674_ID	chr8	39771748	39773240	1493	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
68481	ENST00000521378.1_3	ENST00000522621.1_2	chr8	62177182	62204598	AC023866.2	-	lncRNA	chr8	61969716	62212623	CLVS1	+	protein_coding	27416	opposite	1982_ID	chr8	62177183	62204598	27416	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
68971	ENST00000522970.1_3	ENST00000517623.1_3	chr8	39775594	39778409	AC007991.4	-	lncRNA	chr8	39761293	39852767	AC007991.3	-	lncRNA	2815	same	677_ID	chr8	39775595	39778409	2815	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
69211	ENST00000523724.1_3	ENST00000519144.5_3	chr8	57449316	57453056	AC013644.1	-	lncRNA	chr8	57408804	57472145	LINC00968	-	lncRNA	3740	same	1457_ID	chr8	57449317	57453056	3740	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
71201	ENST00000530918.2_1	ENST00000659432.1_1	chr11	119243415	119252323	AP003396.3	+	lncRNA	chr11	119235187	119283781	USP2-AS1	+	lncRNA	8908	same	6252_ID	chr11	119243416	119252323	8908	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
72141	ENST00000534271.1_1	ENST00000602735.2_4	chr11	321990	322426	AC136475.4	+	lncRNA	chr11	319772	327537	IFITM3	-	protein_coding	436	opposite	4157_ID	chr11	321991	322426	436	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
74481	ENST00000547547.1_3	ENST00000549419.6_4	chr12	70340322	70340861	AC078922.1	-	lncRNA	chr12	70295697	70637146	PRANCR	-	lncRNA	539	same	2606_ID	chr12	70340323	70340861	539	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
75641	ENST00000552806.1_3	ENST00000550530.1_3	chr12	50348421	50349908	AC025154.1	-	lncRNA	chr12	50345294	50356566	AC025154.2	-	lncRNA	1487	same	2050_ID	chr12	50348422	50349908	1487	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
77791	ENST00000558938.1_3	ENST00000327536.5_4	chr15	51356805	51361783	AC073964.1	-	lncRNA	chr15	51348794	51397473	TNFAIP8L3	-	protein_coding	4978	same	2562_ID	chr15	51356806	51361783	4978	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
79201	ENST00000562343.2_1	ENST00000618634.2_5	chr12	52211682	52213934	AC068987.3	+	lncRNA	chr12	52211623	52242550	FIGNL2	-	protein_coding	2252	opposite	2462_ID	chr12	52211683	52213934	2252	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
79321	ENST00000562525.1_3	ENST00000569459.1_3	chr16	30491908	30492667	AC116348.1	-	lncRNA	chr16	30488500	30500674	AC116348.3	-	lncRNA	759	same	3902_ID	chr16	30491909	30492667	759	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
79871	ENST00000563364.3_2	ENST00000563634.1_6	chr16	69371898	69376994	NIP7	+	retained_intron	chr16	69368993	69390209	AC026464.3	-	protein_coding	5111	opposite	9264_ID	chr16	69371899	69376994	5096	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
79961	ENST00000563554.1_3	ENST00000357613.8_3	chr16	75492149	75493915	AC009163.4	-	lncRNA	chr16	75476951	75498587	TMEM170A	-	protein_coding	1766	same	915_ID	chr16	75492150	75493915	1766	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
80511	ENST00000564717.1_3	ENST00000563083.1_3	chr16	67576206	67576475	AC027682.3	-	lncRNA	chr16	67576025	67576866	AC027682.2	-	lncRNA	269	same	2226_ID	chr16	67576207	67576475	269	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
84831	ENST00000577387.1	ENST00000373657.2_5	chrX	71443093	71443403	RN7SL264P	-	misc_RNA	chrX	71424506	71458877	ERCC6L	-	protein_coding	310	same	10063_ID	chrX	71443094	71443403	310	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
84881	ENST00000577396.5_3	ENST00000583841.1_1	chr17	56422607	56429784	SUPT4H1	-	protein_coding	chr17	56414606	56493127	TSPOAP1-AS1	+	lncRNA	7919	opposite	12584_ID	chr17	56422608	56429784	7177	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
84971	ENST00000577455.1	ENST00000413035.5_3	chr1	201688635	201688755	MIR5191	+	miRNA	chr1	201657386	201798687	IPO9-AS1	-	lncRNA	120	opposite	8854_ID	chr1	201688636	201688755	120	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
85401	ENST00000577678.1_3	ENST00000577660.1_3	chr17	57280037	57281190	AC099850.3	-	lncRNA	chr17	57274926	57292587	AC099850.2	+	protein_coding	1153	opposite	3402_ID	chr17	57280038	57281190	1153	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
85571	ENST00000577746.1_3	ENST00000584605.5_3	chr17	25952509	25953464	AC015688.6	-	lncRNA	chr17	25950389	25967803	AC015688.4	+	nonsense_mediated_decay	955	opposite	1470_ID	chr17	25952510	25953464	955	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
86701	ENST00000578416.1	ENST00000524441.2_4	chr11	74110281	74110378	MIR548AL	+	miRNA	chr11	74109869	74127424	AP001085.1	+	lncRNA	97	same	8876_ID	chr11	74110282	74110378	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
87381	ENST00000578837.1	ENST00000511726.1_1	chr3	129815215	129815281	AC083906.2	+	miRNA	chr3	129812748	129832070	ALG1L2	+	processed_transcript	66	same	2724_ID	chr3	129815216	129815281	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
87811	ENST00000579078.1	ENST00000630418.1_3	chr6	33406107	33406214	MIR5004	+	miRNA	chr6	33405139	33422230	SYNGAP1-AS1	-	lncRNA	107	opposite	8807_ID	chr6	33406108	33406214	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
89731	ENST00000580228.1	ENST00000651630.1_3	chr1	24855944	24856204	RN7SL857P	-	misc_RNA	chr1	24822759	24861890	RCAN3AS	-	lncRNA	260	same	10484_ID	chr1	24855945	24856204	260	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
90111	ENST00000580425.1	ENST00000577218.1_3	chr17	27717679	27717748	MIR4523	+	miRNA	chr17	27696734	27717795	AC068025.1	-	lncRNA	69	opposite	8603_ID	chr17	27717680	27717748	69	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
90271	ENST00000580529.1	ENST00000568665.1_5	chr9	140063637	140063722	MIR3621	-	miRNA	chr9	140063305	140066436	AL929554.1	-	protein_coding	85	same	8358_ID	chr9	140063638	140063722	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
97861	ENST00000584718.1	ENST00000460754.1_3	chr3	65926921	65927022	AC106827.2	+	miRNA	chr3	65858489	65940233	MAGI1-IT1	-	lncRNA	101	opposite	3658_ID	chr3	65926922	65927022	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
99661	ENST00000587088.1_3	ENST00000592893.1_3	chr19	10369784	10370721	AC011511.3	-	lncRNA	chr19	10362943	10395784	AC011511.2	-	lncRNA	937	same	1262_ID	chr19	10369785	10370721	937	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
101021	ENST00000591628.1_1	ENST00000588687.5_3	chr17	42751056	42753625	AC091152.2	-	lncRNA	chr17	42750436	42767093	CCDC43	-	protein_coding	2569	same	2984_ID	chr17	42751057	42753625	2569	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
101751	ENST00000594230.1_1	ENST00000596326.5_3	chr19	24110589	24112089	AC011503.2	+	lncRNA	chr19	24101882	24140732	AC011503.1	-	lncRNA	1500	opposite	1257_ID	chr19	24110590	24112089	1500	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
102291	ENST00000596133.1_1	ENST00000512280.1_3	chr1	151738961	151739476	AL589765.5	-	lncRNA	chr1	151735859	151741977	AL589765.4	-	lncRNA	515	same	5739_ID	chr1	151738962	151739476	515	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
104191	ENST00000601484.2_1	ENST00000528367.1_4	chr11	62553494	62554257	AP001160.3	-	lncRNA	chr11	62539132	62559464	TMEM223	-	protein_coding	763	same	6101_ID	chr11	62553495	62554257	763	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
104401	ENST00000602292.1	ENST00000542348.5_3	chr12	124420168	124420753	RP11-380L11.3	-	antisense	chr12	124403206	124428042	CCDC92	-	processed_transcript	585	same	11894_ID	chr12	124420169	124420753	585	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
105131	ENST00000602809.1_3	ENST00000602735.2_4	chr11	322185	322727	AC136475.8	-	lncRNA	chr11	319772	327537	IFITM3	-	protein_coding	542	same	4160_ID	chr11	322186	322727	542	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
105361	ENST00000602952.1	ENST00000542348.5_3	chr12	124410007	124410630	RP11-380L11.4	-	antisense	chr12	124403206	124428042	CCDC92	-	processed_transcript	623	same	11896_ID	chr12	124410008	124410630	623	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
105671	ENST00000603529.1_1	ENST00000630500.1_6	chr6	170606963	170607463	AL078605.1	-	lncRNA	chr6	170598788	170615653	DLL1	-	protein_coding	500	same	4667_ID	chr6	170606964	170607463	500	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
107001	ENST00000606282.1_1	ENST00000655365.1_3	chr5	17107468	17107898	AC026790.1	-	lncRNA	chr5	17089404	17216906	BASP1-AS1	-	lncRNA	430	same	2174_ID	chr5	17107469	17107898	430	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
108281	ENST00000607478.1_1	ENST00000589963.1_3	chr17	74547433	74547832	AC015802.5	+	lncRNA	chr17	74541749	74553734	AC015802.4	-	lncRNA	399	opposite	1480_ID	chr17	74547434	74547832	399	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
108321	ENST00000607513.2_4	ENST00000468628.2_1	chr3	43388414	43393644	SNRK-AS1	-	lncRNA	chr3	43384842	43466256	SNRK	+	processed_transcript	5230	opposite	12479_ID	chr3	43388415	43393644	5230	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
109441	ENST00000608684.1_2	ENST00000476882.1_1	chr1	78470029	78470238	AC103591.3	-	lncRNA	chr1	78445225	78558488	GIPC2	+	processed_transcript	209	opposite	3450_ID	chr1	78470030	78470238	209	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
111821	ENST00000612427.1_1	ENST00000527729.5_4	chr16	66599522	66599904	AC010542.5	-	lncRNA	chr16	66586515	66613038	CKLF-CMTM1	+	protein_coding	382	opposite	1105_ID	chr16	66599523	66599904	382	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
113511	ENST00000616335.1_1	ENST00000564663.1_3	chr15	55635338	55635773	AC018926.1	-	lncRNA	chr15	55632229	55651880	CCPG1	-	protein_coding	435	same	1674_ID	chr15	55635339	55635773	435	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
113721	ENST00000616866.1_1	ENST00000539627.5_1	chr19	41879875	41880324	AC011462.4	+	lncRNA	chr19	41856815	41889988	TMEM91	+	protein_coding	449	same	1222_ID	chr19	41879876	41880324	449	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
113751	ENST00000616901.1_1	ENST00000353265.8_4	chr18	77919634	77920296	AC139100.2	+	lncRNA	chr18	77915114	78005397	PARD6G	-	protein_coding	662	opposite	4204_ID	chr18	77919635	77920296	662	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
113851	ENST00000617117.1_1	ENST00000667353.1_1	chr12	127631693	127634626	AC079949.2	+	lncRNA	chr12	127631079	127635875	AC079949.5	+	lncRNA	2933	same	2690_ID	chr12	127631694	127634626	2933	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
114441	ENST00000618841.1_1	ENST00000564663.1_3	chr15	55638544	55638950	AC018926.3	-	lncRNA	chr15	55632229	55651880	CCPG1	-	protein_coding	406	same	1677_ID	chr15	55638545	55638950	406	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
114741	ENST00000619602.1_1	ENST00000547925.1_3	chr12	56322953	56323513	AC025162.2	+	lncRNA	chr12	56295824	56326402	PYM1	-	protein_coding	560	opposite	2053_ID	chr12	56322954	56323513	560	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
115071	ENST00000620106.1_1	ENST00000551673.5_3	chr12	32889863	32890594	AC084824.4	-	lncRNA	chr12	32880423	32903041	YARS2	-	processed_transcript	731	same	2766_ID	chr12	32889864	32890594	731	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
115251	ENST00000620472.1_1	ENST00000551673.5_3	chr12	32881102	32881958	AC084824.3	-	lncRNA	chr12	32880423	32903041	YARS2	-	processed_transcript	856	same	2764_ID	chr12	32881103	32881958	856	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
115611	ENST00000621300.1_1	ENST00000662829.1_3	chr12	29309380	29309924	AC012150.2	-	lncRNA	chr12	29295901	29311470	AC012150.1	-	lncRNA	544	same	1335_ID	chr12	29309381	29309924	544	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
118431	ENST00000635018.1_3	ENST00000421324.4_1	chr10	80298147	80311476	AL583852.1	-	lncRNA	chr10	79998011	80434866	AC012560.1	+	lncRNA	13329	opposite	5730_ID	chr10	80298148	80311476	13329	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
118471	ENST00000635271.1_1	ENST00000635405.2_4	chr1	9242062	9256343	LNCTAM34A	+	lncRNA	chr1	9239689	9258762	MIR34AHG	-	lncRNA	14281	opposite	7842_ID	chr1	9242063	9256343	14281	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
118971	ENST00000637957.1_1	ENST00000424421.2_4	chr6	149567230	149576551	AL031056.2	+	lncRNA	chr6	149564434	149578687	TAB2-AS1	-	lncRNA	9321	opposite	4504_ID	chr6	149567231	149576551	9321	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
119191	ENST00000640435.1_1	ENST00000438247.1_3	chr2	1556216	1558473	AC141930.2	+	lncRNA	chr2	1550436	1623885	AC141930.1	-	lncRNA	2257	opposite	4223_ID	chr2	1556217	1558473	2257	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
119911	ENST00000642778.1_3	ENST00000400926.5_4	chr6	167528444	167535015	AL121935.1	-	lncRNA	chr6	167525294	167552629	CCR6	+	protein_coding	6571	opposite	4781_ID	chr6	167528445	167535015	6571	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
119991	ENST00000643430.1_1	ENST00000451435.1_2	chr20	36899179	36902422	AL359555.2	+	lncRNA	chr20	36888576	36922294	AL359555.4	+	lncRNA	3243	same	5492_ID	chr20	36899180	36902422	3243	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
120191	ENST00000646991.2_2	ENST00000515598.1_3	chr5	145718401	145721291	POU4F3	+	protein_coding	chr5	145686660	145756526	AC011396.2	-	lncRNA	2890	opposite	9603_ID	chr5	145718402	145721291	2890	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
120221	ENST00000647254.1_3	ENST00000400926.5_4	chr6	167539710	167545060	AL121935.2	-	lncRNA	chr6	167525294	167552629	CCR6	+	protein_coding	5350	opposite	4784_ID	chr6	167539711	167545060	5350	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
120841	ENST00000648543.1_3	ENST00000650017.1_4	chr5	90428119	90438287	AC074132.1	-	lncRNA	chr5	90350650	90499263	LUCAT1	-	lncRNA	10168	same	2572_ID	chr5	90428120	90438287	10168	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
122911	ENST00000652542.1_1	ENST00000602441.1_3	chrX	101906019	101914002	GPRASP1	+	protein_coding	chrX	101854584	101914640	AL035427.1	-	lncRNA	7992	opposite	7172_ID	chrX	101906020	101914002	7983	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
124331	ENST00000655972.1_3	ENST00000587128.1_3	chr19	44401362	44402685	AC006213.7	-	lncRNA	chr19	44395955	44405957	AC006213.2	-	lncRNA	1323	same	440_ID	chr19	44401363	44402685	1323	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
125221	ENST00000657704.1_1	ENST00000658072.1_3	chr5	153725601	153727394	AC008625.1	+	lncRNA	chr5	153705127	153825379	SAP30L-AS1	-	lncRNA	7803	opposite	758_ID	chr5	153725602	153727394	1793	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
126421	ENST00000659972.1_1	ENST00000531948.1_4	chr8	125952282	125954151	AC100858.3	-	lncRNA	chr8	125948765	125956007	AC100858.1	-	lncRNA	1869	same	3441_ID	chr8	125952283	125954151	1869	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
126841	ENST00000660891.1_3	ENST00000559857.1_3	chr15	101598851	101604109	AC090907.3	-	lncRNA	chr15	101590936	101626271	AC090907.2	-	lncRNA	5258	same	2944_ID	chr15	101598852	101604109	5258	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
128631	ENST00000664733.1_3	ENST00000622740.3_5	chr14	29252114	29254899	LINC02282	-	lncRNA	chr14	29240881	29293023	LINC01551	+	lncRNA	2890	opposite	7755_ID	chr14	29252115	29254899	2785	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
128901	ENST00000665127.1_3	ENST00000421345.5_3	chr7	116731731	116737316	AC002542.6	-	lncRNA	chr7	116594444	116759773	AC106873.8	+	protein_coding	5585	opposite	63_ID	chr7	116731732	116737316	5585	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
129331	ENST00000666336.1_3	ENST00000548231.1_3	chr15	80732634	80735092	AC016705.3	-	lncRNA	chr15	80726135	80737493	AC016705.1	-	lncRNA	2458	same	1554_ID	chr15	80732635	80735092	2458	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
129571	ENST00000666727.1_3	ENST00000419358.5_4	chr3	51702607	51705192	AC099050.1	-	lncRNA	chr3	51696708	51718483	TEX264	+	protein_coding	2585	opposite	3351_ID	chr3	51702608	51705192	2585	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
130211	ENST00000668002.1_1	ENST00000447256.2_3	chr3	2177440	2183672	AC087427.1	+	lncRNA	chr3	2152092	2185925	CNTN4-AS2	-	lncRNA	6232	opposite	2815_ID	chr3	2177441	2183672	6232	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
130691	ENST00000669110.1_3	ENST00000421324.4_1	chr10	80047815	80050322	AC010163.3	-	lncRNA	chr10	79998011	80434866	AC012560.1	+	lncRNA	2507	opposite	1026_ID	chr10	80047816	80050322	2507	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
35100	ENST00000222726.4_4	ENST00000518451.1_3	chr7	27180670	27183300	HOXA5	-	protein_coding	chr7	27166546	27192200	HOXA3	-	processed_transcript	2630	same	7257_ID	chr7	27180671	27183300	2630	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
30741	ENST00000410427.1	ENST00000565965.1_3	chr16	90210999	90211103	RNU6-355P	+	snRNA	chr16	90176981	90234633	AC133919.2	-	lncRNA	104	opposite	11177_ID	chr16	90211000	90211103	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
36341	ENST00000420664.1_3	ENST00000471110.5_1	chr7	116605899	116607526	AC106873.1	-	lncRNA	chr7	116594516	116738860	ST7-OT4	+	lncRNA	1627	opposite	3667_ID	chr7	116605900	116607526	1627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
37321	ENST00000422931.2_1	ENST00000568302.5_3	chr13	76205406	76206271	AL137244.1	+	lncRNA	chr13	76178835	76210130	LMO7-AS1	-	lncRNA	865	opposite	4950_ID	chr13	76205407	76206271	865	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
68001	ENST00000519805.1_1	ENST00000520588.1_3	chr8	106682218	106691259	AC103853.2	+	lncRNA	chr8	106674579	106697993	AC103853.1	-	lncRNA	9041	opposite	3481_ID	chr8	106682219	106691259	9041	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
68482	ENST00000521478.1_3	ENST00000518451.1_3	chr7	27185280	27190222	HOXA6	-	processed_transcript	chr7	27166546	27192200	HOXA3	-	processed_transcript	5208	same	7259_ID	chr7	27185281	27190222	4942	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
85661	ENST00000577791.1	ENST00000641641.1_5	chr9	130452965	130453074	MIR3911	-	miRNA	chr9	130452626	130457238	PTRH1	-	protein_coding	109	same	8416_ID	chr9	130452966	130453074	109	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	2	2
90141	ENST00000580489.1	ENST00000524422.1_1	chr11	118301122	118301419	RN7SL86P	+	misc_RNA	chr11	118272346	118302211	ATP5MG	+	protein_coding	297	same	10494_ID	chr11	118301123	118301419	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
99271	ENST00000586051.1_1	ENST00000586356.5_3	chr19	11432831	11434871	AC011472.3	+	lncRNA	chr19	11411452	11435117	AC011472.2	-	lncRNA	2040	opposite	1237_ID	chr19	11432832	11434871	2040	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
100521	ENST00000590241.1_1	ENST00000589963.1_3	chr17	74546032	74546908	AC015802.3	+	lncRNA	chr17	74541749	74553734	AC015802.4	-	lncRNA	876	opposite	1479_ID	chr17	74546033	74546908	876	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
103371	ENST00000599207.6_2	ENST00000594374.1_3	chr19	44079952	44086250	PINLYP	+	protein_coding	chr19	44058843	44097188	L34079.1	-	protein_coding	8164	opposite	9562_ID	chr19	44079953	44086250	6298	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
103692	ENST00000600242.1_1	ENST00000594374.1_3	chr19	44078789	44079770	L34079.3	+	lncRNA	chr19	44058843	44097188	L34079.1	-	protein_coding	981	opposite	7501_ID	chr19	44078790	44079770	981	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
104731	ENST00000602598.1_1	ENST00000524422.1_1	chr11	118286691	118287236	AP001267.4	+	lncRNA	chr11	118272346	118302211	ATP5MG	+	protein_coding	545	same	6113_ID	chr11	118286692	118287236	545	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
106121	ENST00000604845.1_1	ENST00000470285.1_5	chr2	75887587	75889334	AC005034.3	+	lncRNA	chr2	75879125	75893067	GCFC2	-	nonsense_mediated_decay	1747	opposite	220_ID	chr2	75887588	75889334	1747	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
110021	ENST00000609428.1_1	ENST00000418803.1_1	chr22	39132614	39132797	AL021707.8	-	lncRNA	chr22	39130734	39134995	AL021707.3	+	lncRNA	183	opposite	4460_ID	chr22	39132615	39132797	183	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
114382	ENST00000618835.1_1	ENST00000485386.1_3	chr15	80212536	80214797	AC015871.3	-	lncRNA	chr15	80191245	80216044	ST20	-	protein_coding	2261	same	1490_ID	chr15	80212537	80214797	2261	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
119471	ENST00000641568.1_1	ENST00000562772.1_3	chr11	68922945	68927220	SMIM38	+	protein_coding	chr11	68914695	68939032	AP003071.2	-	lncRNA	4275	opposite	12135_ID	chr11	68922946	68927220	4275	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
126532	ENST00000660274.1_1	ENST00000417096.5_3	chr2	208082255	208083869	AC007879.5	+	lncRNA	chr2	208051440	208100607	AC007879.3	-	lncRNA	1614	opposite	661_ID	chr2	208082256	208083869	1614	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
128852	ENST00000665127.1_3	ENST00000471110.5_1	chr7	116731731	116737316	AC002542.6	-	lncRNA	chr7	116594516	116738860	ST7-OT4	+	lncRNA	5585	opposite	62_ID	chr7	116731732	116737316	5585	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
28681	ENST00000408637.1	ENST00000510459.2_3	chr12	65332802	65332897	RNU6ATAC42P	+	snRNA	chr12	65314624	65376304	LINC02231	-	lncRNA	95	opposite	11685_ID	chr12	65332803	65332897	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
42681	ENST00000438597.1_3	ENST00000639326.1_3	chr1	211305929	211306716	KCNH1-IT1	-	lncRNA	chr1	211281786	211348515	AC092017.3	-	lncRNA	787	same	7413_ID	chr1	211305930	211306716	787	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
72921	ENST00000539552.1	ENST00000540625.5_3	chr12	26468647	26470746	RP11-612B6.1	+	lincRNA	chr12	26383751	26472653	AC022509.1	-	lncRNA	2099	opposite	11922_ID	chr12	26468648	26470746	2099	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
115591	ENST00000621404.1_1	ENST00000540625.5_3	chr12	26426261	26426833	AC022509.4	-	lncRNA	chr12	26383751	26472653	AC022509.1	-	lncRNA	572	same	1876_ID	chr12	26426262	26426833	572	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
3427	ENST00000222726.4_4	ENST00000467897.2_3	chr7	27180670	27183300	HOXA5	-	protein_coding	chr7	27168587	27192180	AC004080.6	-	lncRNA	2630	same	7255_ID	chr7	27180671	27183300	2630	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
68441	ENST00000521478.1_3	ENST00000467897.2_3	chr7	27185280	27190222	HOXA6	-	processed_transcript	chr7	27168587	27192180	AC004080.6	-	lncRNA	5208	same	7258_ID	chr7	27185281	27190222	4942	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
2	ENST00000005178.6_4	ENST00000665332.1_1	chr7	95212810	95225828	PDK4	-	protein_coding	chr7	95174555	95244444	AC002451.1	+	lncRNA	13018	opposite	9529_ID	chr7	95212811	95225828	13018	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8	ENST00000040584.6_2	ENST00000513209.1_3	chr12	54402768	54406553	HOXC8	+	protein_coding	chr12	54379628	54428672	AC012531.3	+	protein_coding	3785	same	7279_ID	chr12	54402769	54406553	3785	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
27	ENST00000221233.9_4	ENST00000604424.1_1	chr19	41892278	41903264	EXOSC5	-	protein_coding	chr19	41856757	41916758	AC011462.1	+	processed_transcript	10986	opposite	6947_ID	chr19	41892279	41903264	10986	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
39	ENST00000225394.8_4	ENST00000581474.1_1	chr17	27900492	27916666	GIT1	-	protein_coding	chr17	27887564	28034108	ABHD15-AS1	+	lncRNA	20580	opposite	7119_ID	chr17	27900493	27916666	16174	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
70	ENST00000239144.5_5	ENST00000567101.2_4	chr17	46689707	46692654	HOXB8	-	protein_coding	chr17	46684988	46710934	HOXB7	-	processed_transcript	3916	same	7268_ID	chr17	46689708	46692654	2947	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
73	ENST00000239223.4_4	ENST00000523005.1_2	chr5	172195098	172198198	DUSP1	-	protein_coding	chr5	172189982	172204777	AC022217.3	+	lncRNA	3100	opposite	6859_ID	chr5	172195099	172198198	3100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
78	ENST00000240619.2_2	ENST00000538332.2_9	chr12	10977915	10978957	TAS2R10	-	protein_coding	chr12	10977558	11035256	PRH1	-	protein_coding	1042	same	12598_ID	chr12	10977916	10978957	1042	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
86	ENST00000243578.8_4	ENST00000604424.1_1	chr19	41860321	41870054	B9D2	-	protein_coding	chr19	41856757	41916758	AC011462.1	+	processed_transcript	9749	opposite	6392_ID	chr19	41860322	41870054	9733	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
96	ENST00000246012.2_3	ENST00000619495.1_3	chr20	23471753	23476647	CST8	+	protein_coding	chr20	23462281	23499691	AL109954.1	-	lncRNA	4910	opposite	6722_ID	chr20	23471754	23476647	4894	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
123	ENST00000254035.9_2	ENST00000663674.1_3	chr5	80529140	80562217	CKMT2	+	protein_coding	chr5	80497159	80597291	CKMT2-AS1	-	lncRNA	33079	opposite	6657_ID	chr5	80529141	80562217	33077	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
137	ENST00000256319.7_4	ENST00000555385.1_1	chr14	76116133	76127219	ERG28	-	protein_coding	chr14	76045926	76129557	FLVCR2	+	processed_transcript	11086	opposite	6922_ID	chr14	76116134	76127219	11086	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
153	ENST00000259607.7_7	ENST00000664167.1_3	chr9	34709001	34710133	CCL21	-	protein_coding	chr9	34702949	34774463	AL162231.5	+	lncRNA	1132	opposite	6582_ID	chr9	34709002	34710133	1132	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
160	ENST00000261249.7_4	ENST00000553946.1_1	chr14	61438158	61447797	TRMT5	-	protein_coding	chr14	61346431	61449303	AL160236.2	+	lncRNA	9730	opposite	12789_ID	chr14	61438159	61447797	9639	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
161	ENST00000261721.9_4	ENST00000566841.1_1	chr15	83685174	83736004	BTBD1	-	protein_coding	chr15	83594635	83772195	AC022558.2	+	lncRNA	50830	opposite	6435_ID	chr15	83685175	83736004	50830	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
164	ENST00000262932.5_2	ENST00000494221.1_3	chr7	99717256	99723131	CNPY4	+	protein_coding	chr7	99712836	99724762	AC073842.2	-	lncRNA	5875	opposite	6679_ID	chr7	99717257	99723131	5875	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
195	ENST00000271835.3_4	ENST00000411804.1_1	chr1	152381718	152386739	CRNN	-	protein_coding	chr1	152346429	152417932	FLG-AS1	+	lncRNA	5021	opposite	6715_ID	chr1	152381719	152386739	5021	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
207	ENST00000274787.3_2	ENST00000514533.1_1	chr5	175815751	175816762	HIGD2A	+	protein_coding	chr5	175795852	175828866	ARL10	+	protein_coding	1011	same	7237_ID	chr5	175815752	175816762	1011	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
210	ENST00000276173.5_5	ENST00000604604.1_5	chrX	106143292	106146571	RIPPLY1	-	protein_coding	chrX	106057100	106236570	MORC4	-	protein_coding	3279	same	9754_ID	chrX	106143293	106146571	3279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
215	ENST00000277216.3_3	ENST00000668299.1_1	chr9	107288533	107289490	OR13C4	-	protein_coding	chr9	107282127	107299463	AL450426.1	+	lncRNA	957	opposite	9354_ID	chr9	107288534	107289490	957	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
232	ENST00000281030.2_2	ENST00000528251.1_4	chr11	77774906	77779397	THRSP	+	protein_coding	chr11	77728016	77790890	NDUFC2-KCTD14	-	protein_coding	4491	opposite	12685_ID	chr11	77774907	77779397	4491	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
263	ENST00000290378.6_5	ENST00000671663.1_3	chr15	35082430	35087750	ACTC1	-	protein_coding	chr15	35047328	35105706	AC087457.1	+	lncRNA	5320	opposite	4341_ID	chr15	35082431	35087750	5320	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
302	ENST00000297324.5_2	ENST00000631382.1_3	chr8	13424377	13425797	C8orf48	+	protein_coding	chr8	13357213	13462115	DLC1	-	protein_coding	1420	opposite	6523_ID	chr8	13424378	13425797	1420	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
323	ENST00000301215.8_2	ENST00000678490.1_1	chr19	42724463	42732353	ZNF526	+	protein_coding	chr19	42719284	42736301	AC006486.3	-	protein_coding	7890	opposite	13052_ID	chr19	42724464	42732353	7890	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
346	ENST00000304191.4_2	ENST00000566841.1_1	chr15	83654961	83659809	RAMAC	+	protein_coding	chr15	83594635	83772195	AC022558.2	+	lncRNA	4848	same	9698_ID	chr15	83654962	83659809	4848	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
359	ENST00000306324.4_2	ENST00000432796.2_1	chr2	177016277	177017954	HOXD4	+	protein_coding	chr2	177001684	177034143	HOXD3	+	protein_coding	1677	same	7282_ID	chr2	177016278	177017954	1677	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
367	ENST00000307003.3_2	ENST00000660070.1_2	chr7	148287857	148312952	C7orf33	+	protein_coding	chr7	148281909	148322571	AC005229.5	-	lncRNA	25095	opposite	6519_ID	chr7	148287858	148312952	25095	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
398	ENST00000311177.7_4	ENST00000567101.2_4	chr17	46698517	46703720	HOXB9	-	protein_coding	chr17	46684988	46710934	HOXB7	-	processed_transcript	5203	same	7269_ID	chr17	46698518	46703720	5203	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
399	ENST00000311330.4_3	ENST00000534065.1_2	chr11	66081964	66084515	CD248	-	protein_coding	chr11	66080323	66086708	AP001107.3	+	lncRNA	2551	opposite	6593_ID	chr11	66081965	66084515	2551	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
419	ENST00000313597.10_3	ENST00000429882.1_3	chr2	220363612	220371711	GMPPA	+	protein_coding	chr2	220346794	220381599	ASIC4-AS1	-	lncRNA	8106	opposite	7135_ID	chr2	220363613	220371711	8099	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
424	ENST00000314254.3_3	ENST00000527671.1_3	chr11	18194383	18195827	MRGPRX4	+	protein_coding	chr11	18161732	18211042	AC090099.1	-	lncRNA	1444	opposite	9158_ID	chr11	18194384	18195827	1444	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
460	ENST00000319763.1_1	ENST00000532833.1_4	chr11	120039684	120042387	AP000679.1	+	lncRNA	chr11	120008472	120056131	TRIM29	-	protein_coding	2703	opposite	6008_ID	chr11	120039685	120042387	2703	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
464	ENST00000320270.4_2	ENST00000659008.1_3	chr8	67341248	67342968	RRS1	+	protein_coding	chr8	67276008	67344605	AC009879.4	-	lncRNA	1720	opposite	11968_ID	chr8	67341249	67342968	1720	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
510	ENST00000325926.4_3	ENST00000424322.1_3	chr2	154333851	154335276	RPRM	-	protein_coding	chr2	154278320	154449801	AC012501.2	-	lncRNA	1425	same	11955_ID	chr2	154333852	154335276	1425	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
512	ENST00000326303.4_1	ENST00000664243.1_3	chr14	74058409	74063200	ACOT4	+	protein_coding	chr14	74021818	74100426	AC005225.2	-	lncRNA	4791	opposite	4329_ID	chr14	74058410	74063200	4791	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
537	ENST00000329003.4_2	ENST00000591500.1_1	chr17	74070861	74073618	GALR2	+	protein_coding	chr17	74068041	74075859	ZACN	+	retained_intron	2757	same	7103_ID	chr17	74070862	74073618	2757	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
549	ENST00000329905.6_4	ENST00000411906.1_1	chr10	105212996	105218657	CALHM1	-	protein_coding	chr10	105212602	105222452	AL139339.1	+	lncRNA	5661	opposite	6540_ID	chr10	105212997	105218657	5661	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
575	ENST00000333337.3_1	ENST00000454622.2_3	chr21	34398242	34401504	OLIG2	+	protein_coding	chr21	34285956	34443410	AP000282.1	-	lncRNA	3262	opposite	9333_ID	chr21	34398243	34401504	3262	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
630	ENST00000340457.8_4	ENST00000639209.1_3	chr7	102277471	102283238	UPK3BL1	-	protein_coding	chr7	102219550	102319742	AC105052.4	-	lncRNA	5767	same	12849_ID	chr7	102277472	102283238	5767	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
646	ENST00000342665.4_2	ENST00000662580.1_3	chr20	306238	310868	SOX12	+	protein_coding	chr20	301009	329134	NRSN2-AS1	-	lncRNA	4630	opposite	12492_ID	chr20	306239	310868	4630	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
650	ENST00000342995.4_3	ENST00000455931.1_2	chrX	51149799	51151695	EZHIP	+	protein_coding	chrX	51139382	51208513	AL158055.1	+	lncRNA	1896	same	6949_ID	chrX	51149800	51151695	1896	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
660	ENST00000345068.9_5	ENST00000581474.1_1	chr17	27941779	27949917	CORO6	-	protein_coding	chr17	27887564	28034108	ABHD15-AS1	+	lncRNA	8152	opposite	6693_ID	chr17	27941780	27949917	8138	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
662	ENST00000345382.6_4	ENST00000565495.1_1	chr15	83924654	83953466	BNC1	-	protein_coding	chr15	83853556	84108197	AC103876.1	+	lncRNA	28812	opposite	6426_ID	chr15	83924655	83953466	28812	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
675	ENST00000354425.4_1	ENST00000543114.1_1	chr12	2113831	2120558	AC005342.1	+	lncRNA	chr12	2079951	2224550	CACNA1C	+	protein_coding	6727	same	281_ID	chr12	2113832	2120558	6727	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
688	ENST00000355358.1_3	ENST00000643001.1_3	chr10	8092412	8095447	GATA3-AS1	-	lncRNA	chr10	8087340	8097859	GATA3	+	protein_coding	3035	opposite	7107_ID	chr10	8092413	8095447	3035	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
710	ENST00000358438.6_3	ENST00000639209.1_3	chr7	102305814	102312076	POLR2J2	-	protein_coding	chr7	102219550	102319742	AC105052.4	-	lncRNA	6262	same	9596_ID	chr7	102305815	102312076	6262	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
738	ENST00000361066.7_4	ENST00000429410.2_1	chr1	110276558	110283660	GSTM3	-	protein_coding	chr1	110254888	110318050	GSTM5	+	processed_transcript	7107	opposite	7195_ID	chr1	110276559	110283660	7102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
770	ENST00000362168.1	ENST00000500447.1_3	chr11	568088	568198	MIR210	-	miRNA	chr11	565659	568420	MIR210HG	-	lncRNA	110	same	8173_ID	chr11	568089	568198	110	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
772	ENST00000362173.1	ENST00000604666.1_1	chr7	130135951	130136045	MIR335	+	miRNA	chr7	130135634	130138268	AC007938.2	-	lncRNA	94	opposite	8325_ID	chr7	130135952	130136045	94	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	1
800	ENST00000362252.1	ENST00000553061.1_1	chr12	54730999	54731098	MIR148B	+	miRNA	chr12	54670414	54738867	AC078778.1	+	lncRNA	99	same	8102_ID	chr12	54731000	54731098	99	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
802	ENST00000362260.1	ENST00000641433.1_1	chr16	14403141	14403228	MIR365A	+	miRNA	chr16	14396144	14424924	MIR193BHG	+	lncRNA	87	same	8368_ID	chr16	14403142	14403228	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
817	ENST00000362309.1	ENST00000550290.2_2	chr12	62997465	62997550	MIRLET7I	+	miRNA	chr12	62996531	63015993	AC048341.1	+	lncRNA	85	same	9139_ID	chr12	62997466	62997550	85	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
901	ENST00000362883.1	ENST00000582965.1_1	chr17	62223442	62223512	SNORD104	+	snoRNA	chr17	62223329	62223836	SNHG25	+	lncRNA	70	same	12224_ID	chr17	62223443	62223512	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
936	ENST00000363093.1	ENST00000667635.1_1	chr1	39392541	39392649	RNU6-605P	+	snRNA	chr1	39325644	39430710	AL139260.1	+	lncRNA	108	same	11374_ID	chr1	39392542	39392649	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
958	ENST00000363232.1	ENST00000320322.2_1	chr14	21581797	21581904	RNU6-252P	-	snRNA	chr14	21576201	21584862	AL161668.1	+	lncRNA	107	opposite	11101_ID	chr14	21581798	21581904	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1067	ENST00000363783.1	ENST00000613917.1_1	chr14	89286640	89286776	RNU4-92P	+	snRNA	chr14	89285951	89288495	AL121768.1	-	lncRNA	136	opposite	10717_ID	chr14	89286641	89286776	136	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
1076	ENST00000363848.1	ENST00000329321.4_4	chr2	133281189	133281509	RN7SKP103	+	misc_RNA	chr2	133174377	133404155	GPR39	+	protein_coding	320	same	9761_ID	chr2	133281190	133281509	320	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1128	ENST00000364096.1	ENST00000307584.6_2	chr9	103343360	103343661	RN7SKP87	-	misc_RNA	chr9	103340360	103350671	CAVIN4	+	protein_coding	301	opposite	9930_ID	chr9	103343361	103343661	301	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1172	ENST00000364373.1	ENST00000526041.1_3	chr11	108876243	108876350	RNU6-654P	+	snRNA	chr11	108873191	108908694	AP003123.1	-	lncRNA	107	opposite	11411_ID	chr11	108876244	108876350	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1251	ENST00000364768.1	ENST00000651370.1_3	chr1	234973719	234973820	RNY4P16	+	misc_RNA	chr1	234946798	235068400	AL391832.4	-	lncRNA	101	opposite	11850_ID	chr1	234973720	234973820	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1256	ENST00000364788.1	ENST00000649421.1_1	chr6	31337910	31338017	RNU6-283P	+	snRNA	chr6	31334833	31343865	AL671883.3	+	lncRNA	107	same	11126_ID	chr6	31337911	31338017	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1278	ENST00000364900.1	ENST00000611296.1_1	chr20	30168891	30168995	RNU6-384P	+	snRNA	chr20	30168692	30169017	AL110115.2	+	lncRNA	104	same	11197_ID	chr20	30168892	30168995	104	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
1285	ENST00000364931.1	ENST00000660618.1_1	chr1	11969864	11969984	RNU5E-4P	-	snRNA	chr1	11968208	11974355	AL021155.4	+	lncRNA	120	opposite	10748_ID	chr1	11969865	11969984	120	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1303	ENST00000365039.1	ENST00000637214.1_6	chr12	13612603	13612710	RNU6-590P	-	snRNA	chr12	13590875	13761605	GRIN2B	-	protein_coding	107	same	11362_ID	chr12	13612604	13612710	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1333	ENST00000365223.1	ENST00000581232.1_1	chr18	47015614	47015678	SNORD58C	-	snoRNA	chr18	47013708	47018248	AC100778.3	+	lncRNA	64	opposite	12433_ID	chr18	47015615	47015678	64	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1378	ENST00000365545.1	ENST00000445884.1_1	chr1	10007375	10007694	RN7SKP269	+	misc_RNA	chr1	10002980	10010032	AL357140.2	+	lncRNA	319	same	9869_ID	chr1	10007376	10007694	319	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1389	ENST00000365620.1	ENST00000394942.2_4	chr14	64084760	64084862	RNU6-597P	+	snRNA	chr14	64063756	64108579	WDR89	-	protein_coding	102	opposite	11366_ID	chr14	64084761	64084862	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1437	ENST00000368144.2_2	ENST00000641189.1_3	chr1	158724509	158725681	OR6K6	+	protein_coding	chr1	158717603	158741985	OR6N1	-	processed_transcript	1172	opposite	9471_ID	chr1	158724510	158725681	1172	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1450	ENST00000369173.2	ENST00000443602.2	chr1	149675977	149676609	AL358813.2	+	protein_coding	chr1	149672996	149677289	RP11-353N4.4	+	lincRNA	632	same	5465_ID	chr1	149675978	149676609	632	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1454	ENST00000369805.7_4	ENST00000429410.2_1	chr1	110292702	110306649	EPS8L3	-	protein_coding	chr1	110254888	110318050	GSTM5	+	processed_transcript	13948	opposite	6915_ID	chr1	110292703	110306649	13947	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1457	ENST00000369916.5_2	ENST00000601296.2_2	chr20	62492850	62494341	ABHD16B	+	protein_coding	chr20	62492564	62495646	AL118506.1	-	lncRNA	1491	opposite	11_ID	chr20	62492851	62494341	1491	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
1501	ENST00000372990.6_5	ENST00000667635.1_1	chr1	39351478	39407502	RHBDL2	-	protein_coding	chr1	39325644	39430710	AL139260.1	+	lncRNA	56024	opposite	9745_ID	chr1	39351479	39407502	56024	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1535	ENST00000375605.2	ENST00000671994.1_2	chr1	16555367	16556038	C1orf134	-	protein_coding	chr1	16555168	16557830	AL109627.1	-	lncRNA	671	same	6494_ID	chr1	16555368	16556038	671	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
1537	ENST00000375782.2_2	ENST00000418525.1_3	chr1	16068993	16074477	TMEM82	+	protein_coding	chr1	16066545	16076391	SLC25A34-AS1	-	lncRNA	5484	opposite	12742_ID	chr1	16068994	16074477	5484	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1548	ENST00000376510.8_2	ENST00000655462.1_3	chr10	23384507	23410942	MSRB2	+	protein_coding	chr10	23253992	23422733	AL139815.1	-	lncRNA	26435	opposite	9178_ID	chr10	23384508	23410942	26435	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1576	ENST00000378788.4_4	ENST00000664167.1_3	chr9	34723049	34729485	FAM205A	-	protein_coding	chr9	34702949	34774463	AL162231.5	+	lncRNA	6436	opposite	6968_ID	chr9	34723050	34729485	6436	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1612	ENST00000380516.7_5	ENST00000559757.1_3	chr15	59171248	59225878	SLTM	-	protein_coding	chr15	59157373	59323415	RNF111	+	protein_coding	54630	opposite	12116_ID	chr15	59171249	59225878	54630	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1616	ENST00000380770.5_5	ENST00000589379.1_1	chr19	10397630	10399196	ICAM4	+	protein_coding	chr19	10396476	10399695	AC011511.5	-	lncRNA	1568	opposite	7322_ID	chr19	10397631	10399196	1566	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
1633	ENST00000382171.2_3	ENST00000424148.1_1	chr11	1605571	1606513	KRTAP5-1	-	protein_coding	chr11	1593970	1620414	KRTAP5-AS1	+	lncRNA	942	opposite	7495_ID	chr11	1605572	1606513	942	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1653	ENST00000383875.1	ENST00000581232.1_1	chr18	47017652	47017717	SNORD58A	-	snoRNA	chr18	47013708	47018248	AC100778.3	+	lncRNA	65	opposite	12425_ID	chr18	47017653	47017717	65	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1739	ENST00000384101.1	ENST00000538264.1	chr1	144491441	144491605	RNVU1-5	-	snRNA	chr1	144339737	144521058	AL592284.1	+	protein_coding	164	opposite	11829_ID	chr1	144491442	144491605	164	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1750	ENST00000384130.1	ENST00000657887.1_1	chr6	120847439	120847546	RNU6-214P	-	snRNA	chr6	120783656	121027935	AL096854.1	+	lncRNA	107	opposite	11079_ID	chr6	120847440	120847546	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1757	ENST00000384143.1	ENST00000553946.1_1	chr14	61441044	61441153	RNU6-398P	+	snRNA	chr14	61346431	61449303	AL160236.2	+	lncRNA	109	same	11205_ID	chr14	61441045	61441153	109	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1770	ENST00000384194.1	ENST00000636161.1_1	chr1	161371078	161371185	RNU6-481P	+	snRNA	chr1	161369198	161392214	AL592295.4	+	lncRNA	107	same	11272_ID	chr1	161371079	161371185	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1771	ENST00000384194.1	ENST00000667751.1_3	chr1	161371078	161371185	RNU6-481P	+	snRNA	chr1	161369787	161371658	AL592295.5	+	lncRNA	107	same	11271_ID	chr1	161371079	161371185	107	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	1
1826	ENST00000384361.1	ENST00000659224.1_1	chr14	69202638	69202745	RNU6-921P	-	snRNA	chr14	69197950	69203395	AL132986.1	+	lncRNA	107	opposite	11612_ID	chr14	69202639	69202745	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1852	ENST00000384443.1	ENST00000394942.2_4	chr14	64097395	64097499	RNU6-1162P	+	snRNA	chr14	64063756	64108579	WDR89	-	protein_coding	104	opposite	10870_ID	chr14	64097396	64097499	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1871	ENST00000384498.1	ENST00000623726.1_1	chr22	38287353	38287455	RNU6-900P	+	snRNA	chr22	38272154	38291570	AL022311.1	+	lncRNA	102	same	11594_ID	chr22	38287354	38287455	102	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
1900	ENST00000384559.1	ENST00000500487.2_3	chr15	21950658	21950765	RNU6-1235P	+	snRNA	chr15	21941142	21968151	AC068446.2	-	lncRNA	107	opposite	10932_ID	chr15	21950659	21950765	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1902	ENST00000384567.1	ENST00000659685.1_3	chr17	33900675	33900772	SNORD7	+	snoRNA	chr17	33895134	33901919	SNHG30	+	lncRNA	97	same	12440_ID	chr17	33900676	33900772	97	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1938	ENST00000384651.1	ENST00000553061.1_1	chr12	54711564	54711671	RNU6-950P	-	snRNA	chr12	54670414	54738867	AC078778.1	+	lncRNA	107	opposite	11632_ID	chr12	54711565	54711671	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1970	ENST00000384746.1	ENST00000541749.1_3	chr12	31519221	31519300	RNU6-318P	+	snRNA	chr12	31516414	31522235	LINC02387	-	lncRNA	79	opposite	11151_ID	chr12	31519222	31519300	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2010	ENST00000384839.1	ENST00000513209.1_3	chr12	54427733	54427829	MIR615	+	miRNA	chr12	54379628	54428672	AC012531.3	+	protein_coding	96	same	9017_ID	chr12	54427734	54427829	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2023	ENST00000384853.1	ENST00000591727.1_1	chr19	13985688	13985825	MIR181D	+	miRNA	chr19	13972876	13991569	NANOS3	+	processed_transcript	137	same	8126_ID	chr19	13985689	13985825	137	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2029	ENST00000384863.1	ENST00000429139.1_1	chr9	127454720	127454830	MIR181A2	+	miRNA	chr9	127420745	127460910	MIR181A2HG	+	lncRNA	110	same	8120_ID	chr9	127454721	127454830	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2033	ENST00000384866.1	ENST00000423020.1_3	chr20	61809851	61809938	MIR124-3	+	miRNA	chr20	61798148	61812255	AL096828.1	-	lncRNA	87	opposite	7998_ID	chr20	61809852	61809938	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2048	ENST00000384881.1	ENST00000591727.1_1	chr19	13985512	13985622	MIR181C	+	miRNA	chr19	13972876	13991569	NANOS3	+	processed_transcript	110	same	8125_ID	chr19	13985513	13985622	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2065	ENST00000384907.1	ENST00000641433.1_1	chr16	14397823	14397906	MIR193B	+	miRNA	chr16	14396144	14424924	MIR193BHG	+	lncRNA	83	same	8148_ID	chr16	14397824	14397906	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2089	ENST00000384975.1	ENST00000537269.1_2	chr12	7073259	7073354	MIR141	+	miRNA	chr12	7072408	7073610	MIR200CHG	+	lncRNA	95	same	8095_ID	chr12	7073260	7073354	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2093	ENST00000384980.1	ENST00000537269.1_2	chr12	7072861	7072929	MIR200C	+	miRNA	chr12	7072408	7073610	MIR200CHG	+	lncRNA	68	same	8166_ID	chr12	7072862	7072929	68	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2106	ENST00000385004.1	ENST00000429139.1_1	chr9	127455988	127456077	MIR181B2	+	miRNA	chr9	127420745	127460910	MIR181A2HG	+	lncRNA	89	same	8124_ID	chr9	127455989	127456077	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2111	ENST00000385011.1	ENST00000432796.2_1	chr2	177015030	177015140	MIR10B	+	miRNA	chr2	177001684	177034143	HOXD3	+	protein_coding	110	same	7964_ID	chr2	177015031	177015140	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2151	ENST00000385073.1	ENST00000587762.2_2	chr19	13947253	13947331	MIR27A	-	miRNA	chr19	13934693	13953742	AC020916.1	-	lncRNA	78	same	8210_ID	chr19	13947254	13947331	78	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
2179	ENST00000385189.1	ENST00000513209.1_3	chr12	54385521	54385631	MIR196A2	+	miRNA	chr12	54379628	54428672	AC012531.3	+	protein_coding	110	same	8152_ID	chr12	54385522	54385631	110	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2193	ENST00000385206.1	ENST00000666642.1_3	chr1	35135199	35135295	MIR552	-	miRNA	chr1	35105757	35151333	AC099565.1	-	lncRNA	96	same	8926_ID	chr1	35135200	35135295	96	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2221	ENST00000385245.1	ENST00000587762.2_2	chr19	13947400	13947473	MIR23A	-	miRNA	chr19	13934693	13953742	AC020916.1	-	lncRNA	73	same	8201_ID	chr19	13947401	13947473	73	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
2226	ENST00000385251.1	ENST00000539813.1_1	chr16	33961651	33961766	AC136932.1	+	miRNA	chr16	33961051	33962503	LINC00273	-	lncRNA	115	opposite	4163_ID	chr16	33961652	33961766	115	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
2243	ENST00000385274.1	ENST00000530595.1_1	chr11	57408670	57408759	MIR130A	+	miRNA	chr11	57405848	57420263	AP000662.1	+	lncRNA	89	same	8081_ID	chr11	57408671	57408759	89	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2271	ENST00000388006.1	ENST00000480386.1_1	chr17	46709851	46709921	MIR196A1	-	miRNA	chr17	46706036	46712294	HOXB-AS4	+	lncRNA	70	opposite	8150_ID	chr17	46709852	46709921	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2307	ENST00000390225.1	ENST00000601763.1_1	chr19	46522189	46522307	MIR769	+	miRNA	chr19	46521636	46524576	CCDC61	+	processed_transcript	118	same	9087_ID	chr19	46522190	46522307	118	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2413	ENST00000391085.1	ENST00000509111.2_5	chr4	187422262	187422369	RNU6-1055P	+	snRNA	chr4	187347699	187476482	AC018709.1	-	protein_coding	107	opposite	10799_ID	chr4	187422263	187422369	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2438	ENST00000391183.1	ENST00000519323.1_1	chr8	74991771	74991878	RNU6-1197P	+	snRNA	chr8	74964574	75012088	AC087672.2	+	lncRNA	107	same	10901_ID	chr8	74991772	74991878	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2455	ENST00000391297.1	ENST00000661804.1_1	chr12	59762831	59762932	RNU6-279P	-	snRNA	chr12	59716545	59830655	AC108721.2	+	lncRNA	101	opposite	11123_ID	chr12	59762832	59762932	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2470	ENST00000392196.5	ENST00000539278.1_1	chr19	7967147	7967416	RN7SL115P	-	misc_RNA	chr19	7963688	7968427	AC010336.1	-	lncRNA	269	same	9950_ID	chr19	7967148	7967416	269	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
2484	ENST00000394240.3_3	ENST00000537288.1_3	chr12	8972411	8973309	A2ML1-AS2	-	lncRNA	chr12	8928814	8983543	A2ML1-AS1	-	lncRNA	898	same	2_ID	chr12	8972412	8973309	898	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2487	ENST00000394671.8_2	ENST00000510680.1_3	chr5	140019035	140024989	TMCO6	+	protein_coding	chr5	140018324	140026899	NDUFA2	-	processed_transcript	5974	opposite	12709_ID	chr5	140019036	140024989	5954	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2527	ENST00000398216.2_1	ENST00000607769.1_1	chr1	849550	850351	AL645608.4	+	lncRNA	chr1	840213	851356	AL645608.6	+	lncRNA	801	same	5860_ID	chr1	849551	850351	801	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2615	ENST00000401371.2	ENST00000656603.1_1	chr9	19829750	19829845	AL158077.1	+	miRNA	chr9	19789176	19894854	AL158077.2	+	lncRNA	95	same	5096_ID	chr9	19829751	19829845	95	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2674	ENST00000408157.1	ENST00000656324.1_1	chr22	17079606	17079694	AP000547.1	-	miRNA	chr22	17073784	17081000	AP000547.4	+	lncRNA	88	opposite	5997_ID	chr22	17079607	17079694	88	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2693	ENST00000408215.1	ENST00000329321.4_4	chr2	133281557	133281665	AC104405.1	+	miRNA	chr2	133174377	133404155	GPR39	+	protein_coding	108	same	3530_ID	chr2	133281558	133281665	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2703	ENST00000408253.1	ENST00000605005.1_1	chr14	106663420	106663529	AB019440.1	+	miRNA	chr14	106663245	106665214	AC247036.1	+	lncRNA	109	same	6_ID	chr14	106663421	106663529	109	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2708	ENST00000408263.1	ENST00000369505.4_2	chrX	154612748	154612847	MIR1184-2	-	miRNA	chrX	154611763	154612879	F8A2	+	protein_coding	99	opposite	7972_ID	chrX	154612749	154612847	99	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
2741	ENST00000408341.2	ENST00000438915.1_1	chr3	13779557	13779629	AC093611.1	-	miRNA	chr3	13692195	13788126	LINC00620	+	lncRNA	72	opposite	3226_ID	chr3	13779558	13779629	72	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2845	ENST00000408591.1	ENST00000476842.1_1	chr3	52594585	52594723	RNU6ATAC16P	+	snRNA	chr3	52570620	52613253	SMIM4	+	protein_coding	138	same	11665_ID	chr3	52594586	52594723	138	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2851	ENST00000408605.1	ENST00000562572.1_2	chr16	34510862	34510964	AC007353.1	+	miRNA	chr16	34442307	34518517	AC023824.3	+	lncRNA	102	same	551_ID	chr16	34510863	34510964	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2853	ENST00000408606.1	ENST00000610495.1_1	chrX	154115634	154115733	MIR1184-1	-	miRNA	chrX	154114623	154116336	F8A1	+	protein_coding	99	opposite	7971_ID	chrX	154115635	154115733	99	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	1
2888	ENST00000408676.1	ENST00000622749.2_3	chrX	154687177	154687276	MIR1184-3	+	miRNA	chrX	154686574	154688281	F8A3	-	protein_coding	99	opposite	7973_ID	chrX	154687178	154687276	99	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
2925	ENST00000408771.1	ENST00000284110.2_4	chr17	13446845	13446963	MIR548H3	-	miRNA	chr17	13397348	13505246	HS3ST3A1	-	protein_coding	118	same	8902_ID	chr17	13446846	13446963	118	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3000	ENST00000410005.2_3	ENST00000613894.3_3	chr21	35772409	35773370	FAM243A	-	protein_coding	chr21	35771705	35773413	FAM243B	-	protein_coding	961	same	6982_ID	chr21	35772410	35773370	961	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	1	1
3011	ENST00000410139.1	ENST00000658000.1_4	chr10	21785490	21785570	MIR1915	-	miRNA	chr10	21781586	21786189	MIR1915HG	-	lncRNA	80	same	8146_ID	chr10	21785491	21785570	80	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3053	ENST00000410361.1	ENST00000657061.1_1	chr9	89037852	89038043	RNU2-36P	-	snRNA	chr9	89029127	89103522	AL158828.1	+	lncRNA	191	opposite	10633_ID	chr9	89037853	89038043	191	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3079	ENST00000410431.1	ENST00000584958.2_1	chr17	27715577	27715701	RNU4-34P	+	snRNA	chr17	27679086	27731123	AC068025.2	+	lncRNA	124	same	10677_ID	chr17	27715578	27715701	124	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3091	ENST00000410466.1	ENST00000411560.1_1	chr15	43894740	43894846	RNU6-554P	+	snRNA	chr15	43891589	43897099	CKMT1B	+	processed_transcript	106	same	11335_ID	chr15	43894741	43894846	106	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3093	ENST00000410467.1	ENST00000613697.1_3	chr1	222676973	222677077	RNU6-791P	-	snRNA	chr1	222659401	222677964	AL513314.2	-	lncRNA	104	same	11504_ID	chr1	222676974	222677077	104	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3119	ENST00000410589.1	ENST00000558133.1_2	chr15	82336634	82336717	AC026956.1	+	miRNA	chr15	82334127	82338460	MEX3B	-	protein_coding	83	opposite	2180_ID	chr15	82336635	82336717	83	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	1	1
3181	ENST00000410926.1	ENST00000581474.1_1	chr17	27968628	27968720	RNU6-920P	-	snRNA	chr17	27887564	28034108	ABHD15-AS1	+	lncRNA	92	opposite	11611_ID	chr17	27968629	27968720	92	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3204	ENST00000411044.1	ENST00000580960.1_3	chr17	55866809	55867093	RN7SKP94	+	misc_RNA	chr17	55849306	55912110	AC015845.2	-	lncRNA	284	opposite	9936_ID	chr17	55866810	55867093	284	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3243	ENST00000411283.1	ENST00000519978.1_3	chr8	37526415	37526523	RNU6-607P	+	snRNA	chr8	37483532	37531905	AC137579.1	-	lncRNA	108	opposite	11376_ID	chr8	37526416	37526523	108	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3259	ENST00000411376.1	ENST00000559148.1_1	chr15	47012390	47012710	RN7SKP101	-	misc_RNA	chr15	46985485	47097042	AC073941.1	+	lncRNA	320	opposite	9760_ID	chr15	47012391	47012710	320	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3286	ENST00000411815.3_1	ENST00000374472.5_4	chr1	24233600	24234375	AL590609.2	+	lncRNA	chr1	24197004	24239852	CNR2	-	protein_coding	775	opposite	5775_ID	chr1	24233601	24234375	775	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3318	ENST00000412270.1_4	ENST00000444059.2_6	chr1	112287920	112298131	AL049557.1	-	lncRNA	chr1	112269127	112298446	INKA2	-	processed_transcript	10239	same	4624_ID	chr1	112287921	112298131	10211	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3320	ENST00000412348.1_3	ENST00000431589.1_1	chr20	40642673	40644118	AL049812.3	-	lncRNA	chr20	40619779	40692609	AL049812.2	+	lncRNA	1445	opposite	4637_ID	chr20	40642674	40644118	1445	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3338	ENST00000412754.1_3	ENST00000461016.1_1	chr7	100434935	100450238	SLC12A9-AS1	-	lncRNA	chr7	100424441	100457540	SLC12A9	+	processed_transcript	15303	opposite	12070_ID	chr7	100434936	100450238	15303	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3345	ENST00000412982.5_2	ENST00000429882.1_3	chr2	220356588	220362966	AC053503.6	+	protein_coding	chr2	220346794	220381599	ASIC4-AS1	-	lncRNA	6378	opposite	2324_ID	chr2	220356589	220362966	6378	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3355	ENST00000413291.1_3	ENST00000430787.1_1	chr9	32643100	32645024	AL589642.2	-	lncRNA	chr9	32633451	32648683	AL589642.1	+	lncRNA	1924	opposite	5733_ID	chr9	32643101	32645024	1924	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3407	ENST00000414654.1_3	ENST00000664007.1_1	chr2	7811734	7812377	AC092580.2	-	lncRNA	chr2	7811460	7815867	AC092580.4	+	lncRNA	643	opposite	3105_ID	chr2	7811735	7812377	643	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3457	ENST00000415647.1_3	ENST00000358073.2_3	chr1	180918834	180924023	KIAA1614-AS1	-	lncRNA	chr1	180913177	180945618	AL162431.1	-	lncRNA	5189	same	7438_ID	chr1	180918835	180924023	5189	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3498	ENST00000416951.5_1	ENST00000440194.1_3	chr6	41470181	41487590	LINC01276	+	lncRNA	chr6	41462590	41513981	FOXP4-AS1	-	lncRNA	20820	opposite	7626_ID	chr6	41470182	41487590	17409	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3539	ENST00000418215.1_1	ENST00000485577.1_3	chr7	126990181	126991577	AC000123.1	+	lncRNA	chr7	126986843	127013619	ZNF800	-	processed_transcript	1396	opposite	25_ID	chr7	126990182	126991577	1396	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3544	ENST00000418270.1_1	ENST00000643001.1_3	chr10	8093503	8095047	AL390294.1	+	lncRNA	chr10	8087340	8097859	GATA3	+	protein_coding	1544	same	5554_ID	chr10	8093504	8095047	1544	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3548	ENST00000418416.1_3	ENST00000651680.1_1	chr2	146358474	146360991	AC079163.1	-	lncRNA	chr2	146330229	146523294	AC079163.2	+	lncRNA	2517	opposite	2623_ID	chr2	146358475	146360991	2517	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3692	ENST00000422049.1_1	ENST00000375911.2_3	chr6	31626105	31628498	C6orf47-AS1	+	lncRNA	chr6	31626074	31628555	C6orf47	-	protein_coding	2393	opposite	6518_ID	chr6	31626106	31628498	2393	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	FALSE	1	1
3742	ENST00000423232.1_4	ENST00000443633.1_3	chr10	134774843	134775741	LINC01167	-	lncRNA	chr10	134757470	134778793	LINC01166	-	lncRNA	898	same	7615_ID	chr10	134774844	134775741	898	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3779	ENST00000424421.2_4	ENST00000606202.1_3	chr6	149564434	149578687	TAB2-AS1	-	lncRNA	chr6	149539776	149699665	TAB2	+	protein_coding	14253	opposite	12592_ID	chr6	149564435	149578687	14253	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3802	ENST00000424837.1_1	ENST00000454622.2_3	chr21	34331195	34332874	LINC01690	+	lncRNA	chr21	34285956	34443410	AP000282.1	-	lncRNA	1679	opposite	7667_ID	chr21	34331196	34332874	1679	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3822	ENST00000425350.1_3	ENST00000643064.1_1	chr13	49151109	49152224	LINC00462	-	lncRNA	chr13	48955385	49173572	RB1	+	protein_coding	1115	opposite	7554_ID	chr13	49151110	49152224	1115	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3829	ENST00000425520.2_7	ENST00000655152.1_1	chr10	135437398	135440299	FRG2B	-	protein_coding	chr10	135379362	135443011	AL731769.2	+	lncRNA	2901	opposite	7079_ID	chr10	135437399	135440299	2901	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3842	ENST00000425850.1_1	ENST00000431542.1_1	chr2	742487	747767	AC116609.1	+	lncRNA	chr2	741976	749856	AC116609.2	+	lncRNA	5280	same	3914_ID	chr2	742488	747767	5280	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3868	ENST00000427269.2_3	ENST00000667756.1_3	chr2	186584938	186605206	FSIP2-AS2	-	lncRNA	chr2	186517100	186653529	FSIP2-AS1	-	lncRNA	20606	same	7088_ID	chr2	186584939	186605206	20268	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3893	ENST00000428289.1_3	ENST00000545683.1_3	chr1	149757214	149764576	AC243772.2	-	lncRNA	chr1	149754244	149783928	H2BC18	-	protein_coding	7362	same	4282_ID	chr1	149757215	149764576	7362	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3910	ENST00000428716.2_3	ENST00000627409.1_2	chr13	77654645	77655325	MYCBP2-AS2	-	lncRNA	chr13	77651037	77703852	MYCBP2-AS1	+	lncRNA	680	opposite	9194_ID	chr13	77654646	77655325	680	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3918	ENST00000428891.1_3	ENST00000318160.5_4	chr1	240751821	240754048	AL358176.4	-	lncRNA	chr1	240652872	240775455	GREM2	-	protein_coding	2227	same	5446_ID	chr1	240751822	240754048	2227	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3925	ENST00000429109.1_3	ENST00000372591.1_5	chr1	41840675	41841341	FOXO6-AS1	-	lncRNA	chr1	41827593	41849262	FOXO6	+	processed_transcript	666	opposite	7065_ID	chr1	41840676	41841341	666	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3930	ENST00000429228.1_1	ENST00000479817.1_4	chr7	156799000	156799826	MNX1-AS2	+	lncRNA	chr7	156786744	156802391	MNX1	-	protein_coding	826	opposite	9152_ID	chr7	156799001	156799826	826	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3961	ENST00000430078.1_3	ENST00000656085.1_3	chr6	160007986	160010201	AL078604.2	-	lncRNA	chr6	159889632	160083659	AL078604.4	-	lncRNA	2215	same	4666_ID	chr6	160007987	160010201	2215	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3995	ENST00000430805.6_4	ENST00000643064.1_1	chr13	49063105	49107392	RCBTB2	-	protein_coding	chr13	48955385	49173572	RB1	+	protein_coding	44294	opposite	9726_ID	chr13	49063106	49107392	44287	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4006	ENST00000431209.1_1	ENST00000666064.1_3	chr10	2541912	2542762	AL713851.2	+	lncRNA	chr10	2410754	2544364	LINC02645	-	lncRNA	850	opposite	5889_ID	chr10	2541913	2542762	850	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4020	ENST00000431774.1	ENST00000585316.3_3	chr10	48357925	48358600	RP11-463P17.3	+	antisense	chr10	48355068	48373866	ZNF488	+	protein_coding	675	same	11914_ID	chr10	48357926	48358600	675	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4041	ENST00000432239.1_3	ENST00000341184.7_2	chr22	39871811	39872827	MGAT3-AS1	-	lncRNA	chr22	39853016	39888199	MGAT3	+	protein_coding	1016	opposite	7944_ID	chr22	39871812	39872827	1016	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4128	ENST00000434792.1_1	ENST00000337478.3_4	chr10	106083126	106086762	ITPRIP-AS1	+	lncRNA	chr10	106069457	106098223	ITPRIP	-	protein_coding	3636	opposite	7384_ID	chr10	106083127	106086762	3636	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4136	ENST00000435021.1_1	ENST00000367177.4_4	chr1	204632999	204633741	AL161793.1	+	lncRNA	chr1	204586297	204654866	LRRN2	-	protein_coding	11512	opposite	5174_ID	chr1	204633000	204633741	742	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4141	ENST00000435116.1_3	ENST00000619713.1_1	chr6	158818916	158819593	AL360169.1	-	lncRNA	chr6	158703872	158849411	AL360169.2	+	lncRNA	677	opposite	5517_ID	chr6	158818917	158819593	677	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4159	ENST00000435572.7_4	ENST00000553061.1_1	chr12	54685894	54694799	NFE2	-	protein_coding	chr12	54670414	54738867	AC078778.1	+	lncRNA	8905	opposite	9255_ID	chr12	54685895	54694799	8905	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4208	ENST00000436885.1_1	ENST00000414784.1_1	chr2	113348372	113349516	AC012442.1	+	lncRNA	chr2	113346616	113372008	AC012442.2	+	lncRNA	1144	same	1384_ID	chr2	113348373	113349516	1144	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4321	ENST00000439964.1_1	ENST00000476805.2_5	chr2	64871745	64873832	AC007365.1	+	lncRNA	chr2	64863666	64978139	SERTAD2	-	processed_transcript	2087	opposite	553_ID	chr2	64871746	64873832	2087	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4334	ENST00000440404.6_4	ENST00000666308.1_1	chr1	170240535	170253418	LINC01142	-	lncRNA	chr1	170143505	170273499	LINC01681	+	lncRNA	12883	opposite	7607_ID	chr1	170240536	170253418	12883	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4388	ENST00000442008.2_3	ENST00000315238.3_2	chr10	5566938	5567705	AL732437.1	-	lncRNA	chr10	5566923	5568734	CALML3	+	protein_coding	767	opposite	5906_ID	chr10	5566939	5567705	767	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	1
4454	ENST00000444037.1_1	ENST00000367177.4_4	chr1	204595902	204598840	AL512306.2	+	lncRNA	chr1	204586297	204654866	LRRN2	-	protein_coding	2938	opposite	5680_ID	chr1	204595903	204598840	2938	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4466	ENST00000444379.1_3	ENST00000415940.1_3	chr3	187719487	187721194	AC092941.2	-	lncRNA	chr3	187715209	187721778	AC092941.1	-	lncRNA	1707	same	3174_ID	chr3	187719488	187721194	1707	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4486	ENST00000445073.1_1	ENST00000657314.1_1	chr1	41708246	41750533	AC093151.2	+	lncRNA	chr1	41707443	41804316	AC093151.7	+	lncRNA	42489	same	3182_ID	chr1	41708247	41750533	42287	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4545	ENST00000446590.1_3	ENST00000465917.1_1	chr2	113929111	113932914	AC016683.1	-	lncRNA	chr2	113914901	113940621	PSD4	+	processed_transcript	3826	opposite	1549_ID	chr2	113929112	113932914	3803	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4600	ENST00000448179.1_1	ENST00000607769.1_1	chr1	846814	850328	AL645608.2	+	lncRNA	chr1	840213	851356	AL645608.6	+	lncRNA	3514	same	5859_ID	chr1	846815	850328	3514	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4631	ENST00000448977.1_3	ENST00000625084.1_1	chr2	199052525	199056245	AC020719.1	-	lncRNA	chr2	199014098	199220210	PLCL1	+	processed_transcript	3720	opposite	1730_ID	chr2	199052526	199056245	3720	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4749	ENST00000452288.1_3	ENST00000643064.1_1	chr13	49144774	49147453	LINC01077	-	lncRNA	chr13	48955385	49173572	RB1	+	protein_coding	2679	opposite	7599_ID	chr13	49144775	49147453	2679	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4759	ENST00000452467.1_1	ENST00000559757.1_3	chr15	59182165	59186281	AC025918.1	+	lncRNA	chr15	59157373	59323415	RNF111	+	protein_coding	4116	same	2113_ID	chr15	59182166	59186281	4116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4772	ENST00000452801.1_1	ENST00000487008.1_3	chr2	238499811	238504624	AC104667.2	+	lncRNA	chr2	238499167	238510257	RAB17	-	processed_transcript	4962	opposite	3565_ID	chr2	238499812	238504624	4813	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4798	ENST00000453678.5_3	ENST00000458264.1_3	chr2	5758458	5831250	AC108025.1	-	lncRNA	chr2	5742636	5831620	LINC01248	-	lncRNA	72792	same	3713_ID	chr2	5758459	5831250	72792	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4800	ENST00000453716.1_1	ENST00000454622.2_3	chr21	34430134	34437289	LINC00945	+	lncRNA	chr21	34285956	34443410	AP000282.1	-	lncRNA	7155	opposite	7583_ID	chr21	34430135	34437289	7155	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4863	ENST00000455524.1_1	ENST00000475792.1_1	chr20	62688155	62688437	AL355803.1	+	lncRNA	chr20	62681188	62694220	TCEA2	+	processed_transcript	282	same	5353_ID	chr20	62688156	62688437	282	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4929	ENST00000457108.1_3	ENST00000428888.1_3	chr2	166689557	166695608	AC009495.2	-	lncRNA	chr2	166651366	166702601	AC009495.1	-	lncRNA	6051	same	964_ID	chr2	166689558	166695608	6051	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4932	ENST00000457115.1_1	ENST00000344697.3_4	chr3	43128970	43129560	AC092042.1	+	lncRNA	chr3	43120725	43147571	POMGNT2	-	protein_coding	590	opposite	3031_ID	chr3	43128971	43129560	590	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4950	ENST00000457477.2_1	ENST00000318160.5_4	chr1	240693751	240694162	AL358176.1	+	lncRNA	chr1	240652872	240775455	GREM2	-	protein_coding	411	opposite	5445_ID	chr1	240693752	240694162	411	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4962	ENST00000457996.1	ENST00000426275.1	chr1	120925633	120933000	RP11-439A17.9	+	antisense	chr1	120906608	120935761	RP11-439A17.10	+	antisense	7367	same	11912_ID	chr1	120925634	120933000	7367	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4999	ENST00000458811.1	ENST00000607421.1_1	chr12	7052978	7053041	RNU7-1	+	snRNA	chr12	7052670	7053767	U47924.2	-	lncRNA	63	opposite	11689_ID	chr12	7052979	7053041	63	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	1
5003	ENST00000458819.1	ENST00000468542.1_4	chr3	160190135	160190204	RNU7-136P	-	snRNA	chr3	160156788	160203561	TRIM59	-	protein_coding	69	same	11721_ID	chr3	160190136	160190204	69	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5063	ENST00000459188.1	ENST00000650535.1_3	chr6	14156692	14156754	RNU7-133P	+	snRNA	chr6	14152426	14211417	AL133259.1	-	lncRNA	62	opposite	11719_ID	chr6	14156693	14156754	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5117	ENST00000459468.1	ENST00000564214.1_3	chr15	20944007	20944114	RNU6-498P	+	snRNA	chr15	20935075	20961512	AC012414.4	-	lncRNA	107	opposite	11282_ID	chr15	20944008	20944114	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5190	ENST00000462931.1_3	ENST00000496491.1_1	chr3	149101965	149103587	AC108751.4	-	lncRNA	chr3	149095564	149104370	TM4SF1-AS1	+	lncRNA	1622	opposite	3747_ID	chr3	149101966	149103587	1622	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5192	ENST00000463010.2	ENST00000667181.1_1	chr1	231029886	231030173	RN7SL837P	+	misc_RNA	chr1	231025694	231031534	AL118511.3	+	lncRNA	287	same	10468_ID	chr1	231029887	231030173	287	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5283	ENST00000469617.2	ENST00000671274.1_3	chr18	68179962	68180241	RN7SL795P	+	misc_RNA	chr18	68165158	68221326	AC091646.1	-	lncRNA	279	opposite	10437_ID	chr18	68179963	68180241	279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5287	ENST00000469773.2	ENST00000522278.1_3	chr8	22835389	22835638	RN7SL303P	+	misc_RNA	chr8	22785096	22857513	PEBP4	-	protein_coding	249	opposite	10091_ID	chr8	22835390	22835638	249	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5328	ENST00000472091.2_4	ENST00000416247.4_2	chr6	11102721	11111958	ERVFRD-1	-	protein_coding	chr6	11094066	11138966	SMIM13	+	protein_coding	9237	opposite	6929_ID	chr6	11102722	11111958	9237	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5384	ENST00000475578.2	ENST00000274456.6_2	chr5	118642038	118642326	RN7SL174P	-	misc_RNA	chr5	118604386	118729089	TNFAIP8	+	protein_coding	288	opposite	9995_ID	chr5	118642039	118642326	288	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5393	ENST00000476151.5_3	ENST00000639209.1_3	chr7	102277495	102312088	AC105052.3	-	nonsense_mediated_decay	chr7	102219550	102319742	AC105052.4	-	lncRNA	34593	same	3592_ID	chr7	102277496	102312088	34593	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5430	ENST00000478699.2	ENST00000420172.1_1	chr22	38627725	38627999	RN7SL704P	+	misc_RNA	chr22	38627325	38628254	AL020993.1	+	lncRNA	274	same	10375_ID	chr22	38627726	38627999	274	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5432	ENST00000478771.2_3	ENST00000647589.1_1	chr7	150035405	150038749	RARRES2	-	retained_intron	chr7	150034571	150040435	AC005586.1	+	lncRNA	3346	opposite	9702_ID	chr7	150035406	150038749	3344	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5457	ENST00000480810.2	ENST00000580403.1_3	chr18	71894740	71895036	RN7SL551P	+	misc_RNA	chr18	71878625	71907790	AC090398.1	-	lncRNA	296	opposite	10266_ID	chr18	71894741	71895036	296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5480	ENST00000482613.2	ENST00000376705.3_1	chr13	96821798	96822099	RN7SL164P	+	misc_RNA	chr13	96743092	97491816	HS6ST3	+	protein_coding	301	same	9986_ID	chr13	96821799	96822099	301	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5534	ENST00000485574.2	ENST00000606202.1_3	chr6	149612487	149612780	RN7SL234P	+	misc_RNA	chr6	149539776	149699665	TAB2	+	protein_coding	293	same	10040_ID	chr6	149612488	149612780	293	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5550	ENST00000487317.2	ENST00000565869.1_1	chr15	78209064	78209324	RN7SL214P	-	misc_RNA	chr15	78208863	78214361	AC104758.3	+	lncRNA	260	opposite	10025_ID	chr15	78209065	78209324	260	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5554	ENST00000487527.5_1	ENST00000581474.1_1	chr17	27916800	27941779	ANKRD13B	+	retained_intron	chr17	27887564	28034108	ABHD15-AS1	+	lncRNA	24993	same	5949_ID	chr17	27916801	27941779	24979	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5571	ENST00000488974.2	ENST00000623789.1_1	chr22	31455974	31456269	RN7SL633P	+	misc_RNA	chr22	31447615	31464313	AC005005.4	+	lncRNA	295	same	10323_ID	chr22	31455975	31456269	295	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
5591	ENST00000490341.3_3	ENST00000398989.2_3	chr2	220117964	220136919	TUBA4B	+	protein_coding	chr2	220115493	220142598	TUBA4A	-	protein_coding	18955	opposite	12823_ID	chr2	220117965	220136919	18955	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5630	ENST00000492765.2	ENST00000653303.1_3	chr8	25038945	25039235	RN7SL651P	-	misc_RNA	chr8	25036627	25041749	AC041005.1	-	lncRNA	290	same	10337_ID	chr8	25038946	25039235	290	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5641	ENST00000493229.2	ENST00000656039.1_3	chr15	32894329	32894608	RN7SL286P	+	misc_RNA	chr15	32877724	32907293	AC123768.2	-	lncRNA	279	opposite	10080_ID	chr15	32894330	32894608	279	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5648	ENST00000493933.2	ENST00000651370.1_3	chr1	235039932	235040233	RN7SL668P	+	misc_RNA	chr1	234946798	235068400	AL391832.4	-	lncRNA	301	opposite	10352_ID	chr1	235039933	235040233	301	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5664	ENST00000495609.2	ENST00000675199.1_1	chr10	5673425	5673716	RN7SL445P	+	misc_RNA	chr10	5636946	5674422	LASTR	-	lncRNA	291	opposite	10188_ID	chr10	5673426	5673716	291	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5671	ENST00000496148.2	ENST00000561923.1_1	chr16	58233473	58233740	RN7SL645P	-	misc_RNA	chr16	58231015	58251709	AC009107.1	+	lncRNA	267	opposite	10331_ID	chr16	58233474	58233740	267	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5681	ENST00000496793.2_4	ENST00000637510.1_1	chr9	140509799	140513358	ARRDC1-AS1	-	lncRNA	chr9	140500195	140605470	AL590627.2	+	lncRNA	3575	opposite	6347_ID	chr9	140509800	140513358	3559	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5715	ENST00000498872.2_3	ENST00000292174.5_2	chr11	118756549	118758451	AP004609.1	-	lncRNA	chr11	118754600	118768496	CXCR5	+	protein_coding	1902	opposite	6279_ID	chr11	118756550	118758451	1902	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5725	ENST00000499642.1_3	ENST00000659008.1_3	chr8	67331823	67341212	RRS1-AS1	-	lncRNA	chr8	67276008	67344605	AC009879.4	-	lncRNA	9389	same	11969_ID	chr8	67331824	67341212	9389	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5747	ENST00000501405.2_1	ENST00000504436.1_1	chr5	101941338	101941901	AC099487.1	+	lncRNA	chr5	101917071	101953293	LINC00492	+	lncRNA	563	same	3360_ID	chr5	101941339	101941901	563	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5788	ENST00000503557.1_1	ENST00000315366.8_4	chr4	114864411	114865476	AC104779.1	+	lncRNA	chr4	114821439	114900803	ARSJ	-	protein_coding	1065	opposite	3569_ID	chr4	114864412	114865476	1065	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5822	ENST00000504557.1_1	ENST00000513209.1_3	chr12	54388678	54396672	HOXC9	+	processed_transcript	chr12	54379628	54428672	AC012531.3	+	protein_coding	8443	same	7281_ID	chr12	54388679	54396672	7994	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5859	ENST00000505700.1_3	ENST00000513209.1_3	chr12	54392805	54393794	HOXC-AS1	-	lncRNA	chr12	54379628	54428672	AC012531.3	+	protein_coding	989	opposite	7270_ID	chr12	54392806	54393794	989	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5911	ENST00000507072.5_1	ENST00000511650.1_1	chr5	177378413	177390961	AC106795.2	+	lncRNA	chr5	177366622	177410055	AC106795.3	+	lncRNA	13626	same	3648_ID	chr5	177378414	177390961	12548	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5921	ENST00000507450.5_2	ENST00000639209.1_3	chr7	102290771	102301606	SPDYE2B	+	protein_coding	chr7	102219550	102319742	AC105052.4	-	lncRNA	11074	opposite	12522_ID	chr7	102290772	102301606	10835	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5926	ENST00000507666.1_3	ENST00000514290.1_1	chr4	23724884	23735202	ERVH-1	-	lncRNA	chr4	23562545	23770275	AC093607.1	+	lncRNA	10318	opposite	6930_ID	chr4	23724885	23735202	10318	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5928	ENST00000507739.5_1	ENST00000510744.1_3	chr4	76326404	76348232	AC096759.2	+	lncRNA	chr4	76286416	76359659	AC096759.1	-	lncRNA	21829	opposite	3296_ID	chr4	76326405	76348232	21828	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5971	ENST00000509215.1_3	ENST00000505930.1_3	chr4	76266488	76284234	AC025244.2	-	lncRNA	chr4	76194277	76286392	AC025244.1	-	lncRNA	17746	same	2065_ID	chr4	76266489	76284234	17746	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6041	ENST00000511514.1_3	ENST00000659550.1_1	chr5	5046908	5049610	AC010451.2	-	lncRNA	chr5	4987901	5067869	LINC01020	+	lncRNA	2702	opposite	1078_ID	chr5	5046909	5049610	2702	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6055	ENST00000511840.1_3	ENST00000655122.1_1	chr5	33011427	33017713	AC034223.2	-	lncRNA	chr5	33009039	33026131	AC034223.1	+	lncRNA	6286	opposite	2260_ID	chr5	33011428	33017713	6286	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6093	ENST00000512678.1_1	ENST00000669690.1_3	chr4	44019078	44024080	LINC02475	+	lncRNA	chr4	43974937	44027533	AC114757.1	-	lncRNA	5364	opposite	7777_ID	chr4	44019079	44024080	5002	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6108	ENST00000513207.2_3	ENST00000534168.1_1	chr11	78135027	78140882	LINC02728	-	lncRNA	chr11	78035803	78155095	AP003086.1	+	lncRNA	5855	opposite	7794_ID	chr11	78135028	78140882	5855	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6129	ENST00000513955.1_3	ENST00000504827.1_3	chr5	19035305	19038849	AC106744.2	-	lncRNA	chr5	18965969	19142455	AC106744.1	-	lncRNA	3603	same	3642_ID	chr5	19035306	19038849	3544	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6134	ENST00000514170.7_5	ENST00000513724.1_1	chr4	47937993	48018698	CNGA1	-	protein_coding	chr4	47916158	48027211	NIPAL1	+	processed_transcript	80705	opposite	6674_ID	chr4	47937994	48018698	80705	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6152	ENST00000514568.2_1	ENST00000537288.1_3	chr12	8940869	8948385	AC092490.1	+	lncRNA	chr12	8928814	8983543	A2ML1-AS1	-	lncRNA	7537	opposite	3099_ID	chr12	8940870	8948385	7516	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6171	ENST00000515329.1_1	ENST00000652265.1_3	chr4	152877142	152890533	AC097375.3	+	lncRNA	chr4	152870489	152913077	AC097375.4	-	lncRNA	13391	opposite	3307_ID	chr4	152877143	152890533	13391	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6218	ENST00000515938.1	ENST00000536492.1_3	chr12	11699412	11699474	RNU7-60P	+	snRNA	chr12	11694328	11708772	AC007450.1	-	lncRNA	62	opposite	11796_ID	chr12	11699413	11699474	62	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6293	ENST00000516163.1	ENST00000667606.1_1	chr21	27315358	27315460	RNU6-123P	-	snRNA	chr21	27313916	27324928	AP001442.1	+	lncRNA	102	opposite	10937_ID	chr21	27315359	27315460	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6323	ENST00000516248.1	ENST00000520881.1_1	chr8	58469143	58469195	RNU7-174P	+	snRNA	chr8	58405457	58504118	AC090796.1	+	lncRNA	52	same	11744_ID	chr8	58469144	58469195	52	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6328	ENST00000516266.1	ENST00000526926.6_3	chr8	144728079	144728139	RNU7-109P	-	snRNA	chr8	144718188	144735900	ZNF623	+	protein_coding	60	opposite	11698_ID	chr8	144728080	144728139	60	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6340	ENST00000516296.1	ENST00000424684.1	chr1	149286176	149286322	RNU1-143P	-	snRNA	chr1	149284644	149286975	RP11-403I13.7	+	lincRNA	146	opposite	10567_ID	chr1	149286177	149286322	146	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6396	ENST00000516470.1	ENST00000588060.1_1	chr17	41522874	41522981	RNU6-406P	+	snRNA	chr17	41522074	41528568	MIR2117HG	+	lncRNA	107	same	11216_ID	chr17	41522875	41522981	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6405	ENST00000516501.1	ENST00000651540.1_1	chr7	148638579	148638658	RNY5	+	misc_RNA	chr7	148638574	148638730	AC073140.1	+	lncRNA	79	same	11866_ID	chr7	148638580	148638658	79	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
6411	ENST00000516516.1	ENST00000583436.1_3	chr18	19459761	19459865	RNU6-1038P	+	snRNA	chr18	19451406	19473957	AC103987.2	-	lncRNA	104	opposite	10784_ID	chr18	19459762	19459865	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6449	ENST00000516610.1	ENST00000606227.1_3	chr6	5045817	5046335	RMRPP2	-	misc_RNA	chr6	5031989	5054657	AL359643.2	-	lncRNA	518	same	9756_ID	chr6	5045818	5046335	518	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6473	ENST00000516694.1	ENST00000515489.1_3	chr4	139976628	139976732	RNU6-531P	+	snRNA	chr4	139949265	139981749	ELF2	-	processed_transcript	104	opposite	11315_ID	chr4	139976629	139976732	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6551	ENST00000516930.1	ENST00000501133.2_1	chr4	103758203	103758256	RNU7-151P	-	snRNA	chr4	103749211	103765232	UBE2D3-AS1	+	lncRNA	53	opposite	11728_ID	chr4	103758204	103758256	53	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6565	ENST00000516959.1	ENST00000476842.1_1	chr3	52585861	52585959	RNU6-856P	-	snRNA	chr3	52570620	52613253	SMIM4	+	protein_coding	98	opposite	11562_ID	chr3	52585862	52585959	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6576	ENST00000516985.1	ENST00000522189.1_1	chr5	165036445	165036684	RN7SKP60	+	misc_RNA	chr5	164776035	165205694	AC008415.1	+	lncRNA	239	same	9910_ID	chr5	165036446	165036684	239	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6609	ENST00000517072.1	ENST00000523745.1_1	chr5	104115988	104116090	RNU6-334P	-	snRNA	chr5	104109341	104135473	AC099520.2	+	lncRNA	102	opposite	11159_ID	chr5	104115989	104116090	102	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6677	ENST00000517236.1	ENST00000489264.2_1	chr10	75534079	75534299	RMRPP1	-	misc_RNA	chr10	75533362	75540009	FUT11	+	processed_transcript	220	opposite	9755_ID	chr10	75534080	75534299	220	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6795	ENST00000519803.1_1	ENST00000517494.1_4	chr8	19536082	19546445	AC090541.1	+	lncRNA	chr8	19363055	19615540	CSGALNACT1	-	protein_coding	10363	opposite	2908_ID	chr8	19536083	19546445	10363	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6911	ENST00000523525.1_3	ENST00000652177.1_1	chr8	127011237	127013245	AC024681.2	-	lncRNA	chr8	126954805	127021174	AC016074.2	+	lncRNA	2008	opposite	2033_ID	chr8	127011238	127013245	2008	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6922	ENST00000523784.1_1	ENST00000665530.1_1	chr8	101504755	101505941	AP000424.2	+	lncRNA	chr8	101487897	101513376	AP000424.1	+	lncRNA	1186	same	5985_ID	chr8	101504756	101505941	1186	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6924	ENST00000523810.1_3	ENST00000521188.1_1	chr8	52908769	52920915	AC064807.3	-	lncRNA	chr8	52874017	52935534	AC064807.2	+	lncRNA	12146	opposite	2360_ID	chr8	52908770	52920915	12146	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6945	ENST00000524669.5_3	ENST00000530595.1_1	chr11	57412560	57417417	YPEL4	-	protein_coding	chr11	57405848	57420263	AP000662.1	+	lncRNA	4858	opposite	12929_ID	chr11	57412561	57417417	4857	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6954	ENST00000525381.1_3	ENST00000530492.1_3	chr11	13866408	13892163	LINC02545	-	lncRNA	chr11	13848389	13901046	AC027779.1	-	lncRNA	25755	same	7783_ID	chr11	13866409	13892163	25755	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6980	ENST00000526612.1_3	ENST00000399815.2_3	chr11	310138	311141	AC136475.2	-	lncRNA	chr11	308407	315272	IFITM2	+	protein_coding	1003	opposite	4155_ID	chr11	310139	311141	1003	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6995	ENST00000526951.1_3	ENST00000501708.1_3	chr11	66044249	66044958	AP001107.2	-	lncRNA	chr11	66037302	66045996	AP001107.1	-	lncRNA	714	same	6094_ID	chr11	66044250	66044958	709	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7004	ENST00000527030.1_1	ENST00000534168.1_1	chr11	78099106	78103451	AP003086.2	+	lncRNA	chr11	78035803	78155095	AP003086.1	+	lncRNA	4345	same	6236_ID	chr11	78099107	78103451	4345	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7023	ENST00000527789.1_1	ENST00000310597.6_3	chr11	64884628	64884930	AP003068.3	+	lncRNA	chr11	64883874	64885173	ZNHIT2	-	protein_coding	302	opposite	6233_ID	chr11	64884629	64884930	302	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
7035	ENST00000528075.1_3	ENST00000612930.1_1	chr11	76493624	76494106	AP003119.2	-	lncRNA	chr11	76493356	76509197	TSKU	+	protein_coding	482	opposite	6242_ID	chr11	76493625	76494106	482	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7044	ENST00000528497.1_1	ENST00000662732.1_3	chr11	134820601	134821462	LINC02697	+	lncRNA	chr11	134815011	134850468	AP003062.2	-	lncRNA	861	opposite	7792_ID	chr11	134820602	134821462	861	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7208	ENST00000534271.1_1	ENST00000602429.1_1	chr11	321990	322426	AC136475.4	+	lncRNA	chr11	318652	325631	AC136475.1	+	lncRNA	436	same	4156_ID	chr11	321991	322426	436	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7219	ENST00000534993.5_1	ENST00000656462.1_3	chr14	24439082	24475615	DHRS4L2	+	protein_coding	chr14	24407970	24521718	DHRS4-AS1	-	lncRNA	36535	opposite	6795_ID	chr14	24439083	24475615	36533	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7249	ENST00000537147.5_3	ENST00000609696.1_4	chr1	159173096	159176288	ACKR1	+	protein_coding	chr1	159171095	159177763	CADM3-AS1	-	lncRNA	3194	opposite	4323_ID	chr1	159173097	159176288	3192	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7268	ENST00000538348.6_3	ENST00000566841.1_1	chr15	83657714	83680359	C15orf40	-	protein_coding	chr15	83594635	83772195	AC022558.2	+	lncRNA	23201	opposite	6473_ID	chr15	83657715	83680359	22645	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7274	ENST00000538782.2_1	ENST00000664243.1_3	chr14	74034323	74042357	ACOT2	+	nonsense_mediated_decay	chr14	74021818	74100426	AC005225.2	-	lncRNA	8039	opposite	4328_ID	chr14	74034324	74042357	8034	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7302	ENST00000539905.5_3	ENST00000651021.1_1	chr20	1959402	1974931	PDYN	-	protein_coding	chr20	1946514	2010674	PDYN-AS1	+	lncRNA	15529	opposite	9532_ID	chr20	1959403	1974931	15529	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7307	ENST00000540273.1	ENST00000538264.1	chr1	144363461	144364246	PPIAL4B	-	protein_coding	chr1	144339737	144521058	AL592284.1	+	protein_coding	785	opposite	9611_ID	chr1	144363462	144364246	785	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7322	ENST00000541806.6_2	ENST00000604604.1_5	chrX	106143393	106172810	CLDN2	+	protein_coding	chrX	106057100	106236570	MORC4	-	protein_coding	30698	opposite	6660_ID	chrX	106143394	106172810	29417	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7324	ENST00000541871.1_1	ENST00000543114.1_1	chr12	2157517	2158629	CACNA1C-IT2	+	lncRNA	chr12	2079951	2224550	CACNA1C	+	protein_coding	1112	same	6532_ID	chr12	2157518	2158629	1112	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7342	ENST00000542984.1_1	ENST00000543114.1_1	chr12	2127378	2129698	CACNA1C-IT1	+	lncRNA	chr12	2079951	2224550	CACNA1C	+	protein_coding	2320	same	6531_ID	chr12	2127379	2129698	2320	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7367	ENST00000544089.1_1	ENST00000546086.1_4	chr12	68738443	68743739	AC022511.1	+	lncRNA	chr12	68727032	68835996	LINC02384	-	lncRNA	5296	opposite	1880_ID	chr12	68738444	68743739	5296	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7382	ENST00000544948.1_1	ENST00000537170.1_1	chr11	63849161	63854647	AP006333.2	+	lncRNA	chr11	63803441	63871125	AP000721.2	+	lncRNA	5486	same	6313_ID	chr11	63849162	63854647	5486	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7412	ENST00000546500.5_2	ENST00000553061.1_1	chr12	54673976	54680871	HNRNPA1	+	protein_coding	chr12	54670414	54738867	AC078778.1	+	lncRNA	6896	same	7249_ID	chr12	54673977	54680871	6895	*	+	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7421	ENST00000546789.1_1	ENST00000660360.1_1	chr12	56702651	56703233	AC073896.3	+	lncRNA	chr12	56693896	56711776	AC073896.2	+	lncRNA	582	same	2552_ID	chr12	56702652	56703233	582	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7517	ENST00000550926.1_3	ENST00000519948.4_2	chr12	74931924	74932413	AC025257.1	-	lncRNA	chr12	74931614	74939210	ATXN7L3B	+	protein_coding	489	opposite	2066_ID	chr12	74931925	74932413	489	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	1	1
7537	ENST00000552063.1_1	ENST00000547748.1_3	chr12	47642918	47651322	AC008083.3	+	lncRNA	chr12	47631516	47672804	AC008083.2	-	lncRNA	9416	opposite	696_ID	chr12	47642919	47651322	8404	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7578	ENST00000553621.1_1	ENST00000663930.1_3	chr14	71679349	71684933	AC004817.1	+	lncRNA	chr14	71645769	71710558	AC004817.5	-	lncRNA	5584	opposite	168_ID	chr14	71679350	71684933	5584	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7602	ENST00000554096.2_1	ENST00000531499.2_4	chr14	91709278	91718555	AL135818.1	+	lncRNA	chr14	91698875	91720269	GPR68	-	protein_coding	9453	opposite	4874_ID	chr14	91709279	91718555	9277	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7605	ENST00000554229.1_2	ENST00000664243.1_3	chr14	74077648	74086425	ACOT6	+	protein_coding	chr14	74021818	74100426	AC005225.2	-	lncRNA	8944	opposite	4330_ID	chr14	74077649	74086425	8777	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7627	ENST00000555043.1_3	ENST00000305386.4_2	chr14	50087532	50090198	AL139099.1	-	lncRNA	chr14	50087516	50090199	MGAT2	+	protein_coding	2666	opposite	5006_ID	chr14	50087533	50090198	2666	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	FALSE	1	1
7647	ENST00000555624.1_1	ENST00000553534.1_3	chr14	21387519	21388458	AL355922.1	+	lncRNA	chr14	21366143	21404414	AL355922.4	-	lncRNA	939	opposite	5361_ID	chr14	21387520	21388458	939	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7649	ENST00000555642.1_3	ENST00000553534.1_3	chr14	21384924	21396739	AL355922.3	-	lncRNA	chr14	21366143	21404414	AL355922.4	-	lncRNA	11815	same	5363_ID	chr14	21384925	21396739	11815	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7670	ENST00000556212.1_1	ENST00000557226.1_1	chr14	100806168	100806891	AL157871.2	+	lncRNA	chr14	100800126	100820398	AL157871.4	+	lncRNA	723	same	5081_ID	chr14	100806169	100806891	723	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7692	ENST00000556926.1_1	ENST00000662923.1_1	chr14	89821403	89822915	AL357093.1	+	lncRNA	chr14	89815720	89832425	AL357093.2	+	lncRNA	1512	same	5417_ID	chr14	89821404	89822915	1512	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7697	ENST00000557144.1_3	ENST00000506970.2_3	chr4	8860440	8862553	AC116612.1	-	lncRNA	chr4	8847801	8873348	HMX1	-	protein_coding	2113	same	3915_ID	chr4	8860441	8862553	2113	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7743	ENST00000558263.5_1	ENST00000656462.1_3	chr14	24422942	24438483	DHRS4	+	protein_coding	chr14	24407970	24521718	DHRS4-AS1	-	lncRNA	15546	opposite	6794_ID	chr14	24422943	24438483	15541	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7745	ENST00000558293.7_3	ENST00000656462.1_3	chr14	24439139	24520586	AL136419.1	+	lncRNA	chr14	24407970	24521718	DHRS4-AS1	-	lncRNA	81447	opposite	4909_ID	chr14	24439140	24520586	81447	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7748	ENST00000558343.1_1	ENST00000558607.1_3	chr15	52374498	52378771	AC023906.2	+	lncRNA	chr15	52348871	52392720	AC023906.5	-	lncRNA	4273	opposite	1984_ID	chr15	52374499	52378771	4273	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7755	ENST00000558443.1_1	ENST00000416172.1_1	chr15	64762451	64763563	AC091231.1	+	lncRNA	chr15	64752940	64795257	ZNF609	+	protein_coding	1112	same	2995_ID	chr15	64762452	64763563	1112	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7810	ENST00000559802.1_3	ENST00000560487.1_1	chr16	54971697	54972583	AC106738.2	-	lncRNA	chr16	54968824	54988577	AC106738.1	+	lncRNA	886	opposite	3639_ID	chr16	54971698	54972583	886	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7840	ENST00000560450.1_3	ENST00000566841.1_1	chr15	83690987	83693088	AC022558.1	-	lncRNA	chr15	83594635	83772195	AC022558.2	+	lncRNA	2101	opposite	1887_ID	chr15	83690988	83693088	2101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7843	ENST00000560477.1_3	ENST00000559041.1_1	chr15	90122995	90125528	AC013391.1	-	lncRNA	chr15	90061753	90135187	AC013391.2	+	lncRNA	2533	opposite	1437_ID	chr15	90122996	90125528	2533	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7894	ENST00000561794.1_1	ENST00000663930.1_3	chr14	71648172	71648823	AC004817.2	+	lncRNA	chr14	71645769	71710558	AC004817.5	-	lncRNA	651	opposite	169_ID	chr14	71648173	71648823	651	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7947	ENST00000562846.1_1	ENST00000605277.1_3	chr16	67595313	67596212	AC027682.1	-	lncRNA	chr16	67583116	67597861	AC027682.4	-	lncRNA	899	same	2224_ID	chr16	67595314	67596212	899	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7951	ENST00000562848.1_1	ENST00000513209.1_3	chr12	54413693	54416373	AC012531.1	+	lncRNA	chr12	54379628	54428672	AC012531.3	+	protein_coding	2680	same	1403_ID	chr12	54413694	54416373	2680	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7964	ENST00000563044.1_3	ENST00000679144.1_1	chr15	23812410	23814804	AC126407.1	-	lncRNA	chr15	23810820	23874988	MKRN3	+	protein_coding	2394	opposite	4023_ID	chr15	23812411	23814804	2394	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8076	ENST00000565449.1_3	ENST00000666392.1_4	chr7	141212497	141212983	AC073878.2	-	lncRNA	chr7	141199878	141229070	AC073878.1	-	lncRNA	486	same	2551_ID	chr7	141212498	141212983	486	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8087	ENST00000565648.1_3	ENST00000574616.2_2	chr16	9199690	9201031	AC087190.1	-	lncRNA	chr16	9198704	9207038	AC087190.3	+	lncRNA	1341	opposite	2782_ID	chr16	9199691	9201031	1341	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	1
8097	ENST00000565783.1_3	ENST00000505035.2_4	chr16	27078248	27079179	AC092725.1	-	lncRNA	chr16	27078027	27080486	C16orf82	+	protein_coding	931	opposite	3137_ID	chr16	27078249	27079179	931	*	-	Exon	TRUE	FALSE	FALSE	TRUE	TRUE	TRUE	FALSE	FALSE	FALSE	1	1
8140	ENST00000566641.1_1	ENST00000659783.1_3	chr16	31558018	31558558	AC106730.1	-	lncRNA	chr16	31554068	31564910	LINC02190	-	lncRNA	540	same	3636_ID	chr16	31558019	31558558	540	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8212	ENST00000568144.1_1	ENST00000574364.1_1	chr16	11974931	11976426	AC007216.3	-	lncRNA	chr16	11945505	11989468	AC007216.4	+	lncRNA	1495	opposite	525_ID	chr16	11974932	11976426	1495	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8217	ENST00000568256.1_1	ENST00000446671.1_1	chr17	14934291	14935274	CDRT7	+	lncRNA	chr17	14918121	14955593	AC005772.1	+	lncRNA	983	same	6608_ID	chr17	14934292	14935274	983	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8232	ENST00000568441.1_1	ENST00000566841.1_1	chr15	83691322	83759534	AC024270.1	+	lncRNA	chr15	83594635	83772195	AC022558.2	+	lncRNA	68212	same	2008_ID	chr15	83691323	83759534	68212	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8254	ENST00000569091.1_3	ENST00000598446.1_3	chr19	52561742	52566956	AC011468.1	-	lncRNA	chr19	52552062	52598991	ZNF432	-	processed_transcript	5214	same	1230_ID	chr19	52561743	52566956	5214	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8280	ENST00000569860.1_1	ENST00000657078.1_3	chr2	12855540	12856353	AC009486.1	+	lncRNA	chr2	12842889	12856683	AC009486.2	-	lncRNA	813	opposite	962_ID	chr2	12855541	12856353	813	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8292	ENST00000570202.1_1	ENST00000566841.1_1	chr15	83681412	83730597	AC024270.3	+	lncRNA	chr15	83594635	83772195	AC022558.2	+	lncRNA	49185	same	2011_ID	chr15	83681413	83730597	49185	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8305	ENST00000570493.2_3	ENST00000674339.1_2	chr17	4635050	4635666	AC091153.4	-	lncRNA	chr17	4634722	4636903	MED11	+	protein_coding	616	opposite	2987_ID	chr17	4635051	4635666	616	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8322	ENST00000571512.1_1	ENST00000572499.1_1	chr17	204527	206673	AC129507.3	+	lncRNA	chr17	202428	207372	AC129507.2	+	lncRNA	2146	same	4050_ID	chr17	204528	206673	2146	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8380	ENST00000574483.1_3	ENST00000331238.7_4	chr17	1923245	1926958	AC099684.3	-	lncRNA	chr17	1837970	1928628	RTN4RL1	-	protein_coding	3713	same	3389_ID	chr17	1923246	1926958	3713	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8381	ENST00000574520.3_1	ENST00000331238.7_4	chr17	1898907	1906965	AC099684.2	+	lncRNA	chr17	1837970	1928628	RTN4RL1	-	protein_coding	8058	opposite	3388_ID	chr17	1898908	1906965	8058	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8411	ENST00000576138.1_3	ENST00000635042.1_2	chr17	6556782	6558328	AC004706.1	-	lncRNA	chr17	6555190	6596521	C17orf100	+	nonsense_mediated_decay	1546	opposite	160_ID	chr17	6556783	6558328	1546	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
8445	ENST00000577227.1_3	ENST00000584219.1_1	chr17	30856025	30857067	AC079336.3	-	lncRNA	chr17	30845970	30858510	AC079336.4	+	lncRNA	1042	opposite	2649_ID	chr17	30856026	30857067	1042	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8485	ENST00000577414.1	ENST00000300880.11_3	chr19	47730198	47730278	MIR3191	+	miRNA	chr19	47724080	47736023	BBC3	-	protein_coding	80	opposite	8303_ID	chr19	47730199	47730278	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8519	ENST00000577604.1	ENST00000553061.1_1	chr12	54738393	54738645	RN7SL744P	+	misc_RNA	chr12	54670414	54738867	AC078778.1	+	lncRNA	252	same	10399_ID	chr12	54738394	54738645	252	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8592	ENST00000577950.1	ENST00000670698.1_3	chr13	110750199	110750498	RN7SL783P	-	misc_RNA	chr13	110688638	110781483	AL390755.1	-	lncRNA	299	same	10429_ID	chr13	110750200	110750498	299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8613	ENST00000578110.1	ENST00000587660.1_1	chr18	53146451	53146529	MIR4529	+	miRNA	chr18	53119763	53150171	TCF4-AS1	+	lncRNA	78	same	8610_ID	chr18	53146452	53146529	78	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8619	ENST00000578157.1	ENST00000395699.5_4	chr7	44921346	44921399	MIR4657	-	miRNA	chr7	44915897	44925129	PURB	-	protein_coding	53	same	8647_ID	chr7	44921347	44921399	53	*	-	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	1	1
8659	ENST00000578401.1	ENST00000284110.2_4	chr17	13403570	13403645	AC005375.1	-	miRNA	chr17	13397348	13505246	HS3ST3A1	-	protein_coding	75	same	287_ID	chr17	13403571	13403645	75	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8677	ENST00000578513.1	ENST00000649421.1_1	chr6	31342094	31342180	AL671883.1	-	miRNA	chr6	31334833	31343865	AL671883.3	+	lncRNA	86	opposite	5882_ID	chr6	31342095	31342180	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8724	ENST00000578774.1_1	ENST00000578689.2_3	chr17	38516906	38520945	AC080112.1	+	lncRNA	chr17	38516903	38520989	GJD3	-	protein_coding	4039	opposite	2703_ID	chr17	38516907	38520945	4039	*	+	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	FALSE	1	1
8727	ENST00000578796.1	ENST00000665695.1_3	chr4	186043475	186043576	AC093824.1	+	miRNA	chr4	186040137	186048632	AC093824.2	-	lncRNA	101	opposite	3249_ID	chr4	186043476	186043576	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8728	ENST00000578799.1	ENST00000549527.1_3	chr12	79856243	79856330	AC027288.2	-	miRNA	chr12	79734984	79897176	AC027288.3	-	lncRNA	87	same	2206_ID	chr12	79856244	79856330	87	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8749	ENST00000578945.1	ENST00000659841.1_3	chr5	126596627	126596690	AC011416.1	+	miRNA	chr5	126567668	126626395	AC011416.4	-	lncRNA	63	opposite	1207_ID	chr5	126596628	126596690	63	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8754	ENST00000578964.1	ENST00000563734.1_1	chr16	2320713	2320773	MIR3677	+	miRNA	chr16	2318155	2323419	AC009065.4	+	lncRNA	60	same	8382_ID	chr16	2320714	2320773	60	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8759	ENST00000579019.2_1	ENST00000414744.2_2	chr17	26934980	26936748	AC005726.4	+	lncRNA	chr17	26925807	26944395	SPAG5-AS1	+	lncRNA	1768	same	345_ID	chr17	26934981	26936748	1768	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8768	ENST00000579050.1_1	ENST00000581474.1_1	chr17	27896597	27897537	AC104564.3	+	lncRNA	chr17	27887564	28034108	ABHD15-AS1	+	lncRNA	940	same	3555_ID	chr17	27896598	27897537	940	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8801	ENST00000579266.1	ENST00000650868.1_3	chr20	43509478	43509775	RN7SL31P	-	misc_RNA	chr20	43493075	43514245	AL008725.1	-	lncRNA	297	same	10101_ID	chr20	43509479	43509775	297	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8822	ENST00000579424.1	ENST00000465549.1_1	chr7	151130574	151130725	MIR3907	-	miRNA	chr7	151124768	151136210	AC005996.1	+	lncRNA	151	opposite	8412_ID	chr7	151130575	151130725	151	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8836	ENST00000579480.1_3	ENST00000669341.1_3	chr18	75694975	75698566	AC134978.1	-	lncRNA	chr18	75682594	75705687	LINC01029	-	lncRNA	3591	same	4131_ID	chr18	75694976	75698566	3591	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8888	ENST00000579776.1	ENST00000653765.1_1	chr13	66540461	66540561	MIR548X2	-	miRNA	chr13	66515204	66547831	AL158038.1	+	lncRNA	100	opposite	8922_ID	chr13	66540462	66540561	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8913	ENST00000579892.1	ENST00000301998.5_2	chr2	62432960	62433052	MIR5192	+	miRNA	chr2	62423249	62451866	B3GNT2	+	protein_coding	92	same	8855_ID	chr2	62432961	62433052	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8933	ENST00000579981.1_1	ENST00000582866.1_1	chr17	79836542	79837433	AC145207.6	+	lncRNA	chr17	79836300	79838982	AC145207.5	-	lncRNA	891	opposite	4234_ID	chr17	79836543	79837433	891	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
8960	ENST00000580198.1	ENST00000369982.5_2	chrX	153246547	153246628	MIR3202-1	+	miRNA	chrX	153238204	153248645	TMEM187	+	protein_coding	81	same	8312_ID	chrX	153246548	153246628	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8979	ENST00000580321.1	ENST00000665587.1_3	chr4	585358	585697	RN7SL358P	+	misc_RNA	chr4	571307	611865	AC116565.1	+	lncRNA	339	same	10127_ID	chr4	585359	585697	339	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8995	ENST00000580371.1	ENST00000374472.5_4	chr1	24208283	24208575	RN7SL24P	-	misc_RNA	chr1	24197004	24239852	CNR2	-	protein_coding	292	same	10055_ID	chr1	24208284	24208575	292	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9019	ENST00000580529.1	ENST00000371542.3_3	chr9	140063637	140063722	MIR3621	-	miRNA	chr9	140063209	140064503	LRRC26	-	protein_coding	85	same	8357_ID	chr9	140063638	140063722	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9032	ENST00000580586.1	ENST00000666064.1_3	chr10	2495328	2495418	AC024908.1	-	miRNA	chr10	2410754	2544364	LINC02645	-	lncRNA	90	same	2037_ID	chr10	2495329	2495418	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9036	ENST00000580591.1	ENST00000668145.1_1	chr3	75762166	75762465	RN7SL92P	-	misc_RNA	chr3	75721450	75791199	LINC00960	+	lncRNA	299	opposite	10500_ID	chr3	75762167	75762465	299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9063	ENST00000580715.1	ENST00000590989.1_3	chr19	4466462	4466736	RN7SL528P	+	misc_RNA	chr19	4457958	4471276	AC011498.1	-	lncRNA	274	opposite	10252_ID	chr19	4466463	4466736	274	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9080	ENST00000580817.1	ENST00000402221.4_1	chr7	1883815	1883889	MIR4655	-	miRNA	chr7	1878221	1889567	AC104129.1	+	lncRNA	74	opposite	8643_ID	chr7	1883816	1883889	74	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9102	ENST00000580912.1	ENST00000614670.1_1	chr20	36726797	36727102	RN7SL237P	-	misc_RNA	chr20	36694483	36756182	RPRD1B	+	protein_coding	305	opposite	10042_ID	chr20	36726798	36727102	305	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9120	ENST00000580972.1	ENST00000577914.1_1	chr2	122288456	122288583	RNU4ATAC	+	snRNA	chr2	122287997	122290281	AC012447.1	+	lncRNA	127	same	10720_ID	chr2	122288457	122288583	127	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9161	ENST00000581240.1_1	ENST00000581474.1_1	chr17	27966644	27967843	AC104564.1	+	lncRNA	chr17	27887564	28034108	ABHD15-AS1	+	lncRNA	1199	same	3550_ID	chr17	27966645	27967843	1199	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9163	ENST00000581261.1	ENST00000574826.1_1	chr17	54968630	54968716	MIR3614	-	miRNA	chr17	54966240	54969202	AC015912.1	+	lncRNA	86	opposite	8348_ID	chr17	54968631	54968716	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9170	ENST00000581329.1	ENST00000424119.1_3	chr2	64567892	64567973	MIR4433	+	miRNA	chr2	64565200	64568781	AC114752.2	-	lncRNA	81	opposite	8533_ID	chr2	64567893	64567973	81	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9213	ENST00000581622.1_1	ENST00000584959.1_1	chr17	62895883	62896834	AC103810.5	+	lncRNA	chr17	62888941	62906298	AC103810.2	+	lncRNA	951	same	3472_ID	chr17	62895884	62896834	951	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9214	ENST00000581624.1	ENST00000650939.1_2	chr2	220771222	220771286	MIR4268	-	miRNA	chr2	220769703	220777555	AC008281.1	-	lncRNA	64	same	8468_ID	chr2	220771223	220771286	64	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9227	ENST00000581719.2_1	ENST00000582554.1_3	chr18	902766	906668	AP000894.2	-	lncRNA	chr18	894435	907681	AP000894.3	-	lncRNA	3902	same	6047_ID	chr18	902767	906668	3902	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9235	ENST00000581751.1	ENST00000526713.1_3	chr11	101390550	101390636	MIR3920	-	miRNA	chr11	101375435	101743293	TRPC6	-	processed_transcript	86	same	8424_ID	chr11	101390551	101390636	86	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9278	ENST00000581938.1	ENST00000643232.1_1	chr1	55691313	55691396	MIR4422	+	miRNA	chr1	55683317	55790364	MIR4422HG	+	lncRNA	83	same	8528_ID	chr1	55691314	55691396	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9285	ENST00000581970.1	ENST00000331351.6_2	chr16	26036557	26036631	MIR548W	+	miRNA	chr16	25703279	26149006	HS3ST4	+	protein_coding	74	same	8920_ID	chr16	26036558	26036631	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9332	ENST00000582228.1	ENST00000647580.1_3	chr14	77433862	77434108	RN7SL356P	-	misc_RNA	chr14	77424440	77466952	AC007686.4	-	lncRNA	246	same	10126_ID	chr14	77433863	77434108	246	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9340	ENST00000582257.1	ENST00000307750.5_4	chr9	37459391	37459706	RN7SL463P	-	misc_RNA	chr9	37438098	37465447	ZBTB5	-	protein_coding	315	same	10204_ID	chr9	37459392	37459706	315	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9363	ENST00000582367.1_1	ENST00000581474.1_1	chr17	27948634	27949272	AC104564.2	-	lncRNA	chr17	27887564	28034108	ABHD15-AS1	+	lncRNA	638	opposite	3553_ID	chr17	27948635	27949272	638	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9382	ENST00000582487.1	ENST00000642173.1_1	chr5	159901408	159901490	MIR3142	+	miRNA	chr5	159865600	159914433	MIR3142HG	+	lncRNA	82	same	8267_ID	chr5	159901409	159901490	82	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9396	ENST00000582609.1	ENST00000635042.1_2	chr17	6558758	6558828	MIR4520A	-	miRNA	chr17	6555190	6596521	C17orf100	+	nonsense_mediated_decay	70	opposite	8602_ID	chr17	6558759	6558828	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
9441	ENST00000582824.1	ENST00000668145.1_1	chr3	75787430	75787514	MIR4273	+	miRNA	chr3	75721450	75791199	LINC00960	+	lncRNA	84	same	8473_ID	chr3	75787431	75787514	84	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9454	ENST00000582881.1_1	ENST00000581474.1_1	chr17	27971813	27972865	AC104564.5	-	lncRNA	chr17	27887564	28034108	ABHD15-AS1	+	lncRNA	1052	opposite	3560_ID	chr17	27971814	27972865	1052	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9466	ENST00000582948.1	ENST00000652932.1_1	chr7	63387213	63387279	AC092634.2	+	miRNA	chr7	63386209	63391298	AC092634.8	+	lncRNA	66	same	3111_ID	chr7	63387214	63387279	66	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9471	ENST00000582990.1_1	ENST00000577309.1_1	chr17	21360745	21362301	AC068418.1	+	lncRNA	chr17	21359824	21363527	AC068418.2	-	lncRNA	1556	opposite	2409_ID	chr17	21360746	21362301	1556	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	1
9476	ENST00000583007.1	ENST00000412344.1_3	chr1	230865625	230865915	RN7SL467P	+	misc_RNA	chr1	230846443	230931238	AL512328.1	-	lncRNA	290	opposite	10207_ID	chr1	230865626	230865915	290	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9524	ENST00000583259.1	ENST00000626826.1_1	chr12	102611097	102611391	RN7SL793P	-	misc_RNA	chr12	102591362	102796374	HELLPAR	+	lncRNA	294	opposite	10436_ID	chr12	102611098	102611391	294	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
9525	ENST00000583262.1_1	ENST00000360954.3_2	chr17	14207170	14208822	AC005224.3	+	lncRNA	chr17	14204397	14252721	HS3ST3B1	+	protein_coding	1652	same	254_ID	chr17	14207171	14208822	1652	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9542	ENST00000583416.1_1	ENST00000577423.2_1	chr17	62939379	62947172	AC037487.1	+	lncRNA	chr17	62936719	62950295	AC037487.4	+	lncRNA	7793	same	2285_ID	chr17	62939380	62947172	7793	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9573	ENST00000583581.1	ENST00000449866.2_5	chr12	105345537	105345624	AC090051.1	+	miRNA	chr12	105322021	105352522	SLC41A2	-	protein_coding	87	opposite	2866_ID	chr12	105345538	105345624	87	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9579	ENST00000583598.1_1	ENST00000543475.1_1	chr17	17681094	17682408	AC122129.2	+	lncRNA	chr17	17679999	17682843	SMCR5	-	lncRNA	1314	opposite	3982_ID	chr17	17681095	17682408	1314	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	1
9597	ENST00000583685.1	ENST00000671401.1_3	chr4	153410478	153410568	MIR3140	-	miRNA	chr4	153370273	153434940	AC023424.2	+	lncRNA	90	opposite	8265_ID	chr4	153410479	153410568	90	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9637	ENST00000583940.5_5	ENST00000581474.1_1	chr17	27894197	27898720	TP53I13	+	protein_coding	chr17	27887564	28034108	ABHD15-AS1	+	lncRNA	7106	same	12761_ID	chr17	27894198	27898720	4523	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9664	ENST00000584068.3_3	ENST00000544708.1	chr1	148201876	148202521	PPIAL4H	-	protein_coding	chr1	148201751	148202536	PPIAL4D	-	protein_coding	645	same	9612_ID	chr1	148201877	148202521	645	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	FALSE	1	1
9666	ENST00000584075.1_1	ENST00000581657.1_3	chr17	75260261	75260858	AC068594.1	-	lncRNA	chr17	75253818	75270408	SEPTIN9-DT	-	lncRNA	597	same	2424_ID	chr17	75260262	75260858	597	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9667	ENST00000584082.1	ENST00000566841.1_1	chr15	83736086	83736167	MIR4515	+	miRNA	chr15	83594635	83772195	AC022558.2	+	lncRNA	81	same	8593_ID	chr15	83736087	83736167	81	*	+	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9718	ENST00000584349.1	ENST00000662748.1_3	chr8	143257699	143257779	MIR4472-1	+	miRNA	chr8	143192774	143266888	AC103758.1	-	lncRNA	80	opposite	8562_ID	chr8	143257700	143257779	80	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9740	ENST00000584480.1	ENST00000664475.1_3	chr8	101394990	101395073	MIR4471	+	miRNA	chr8	101392713	101476841	AP003472.1	-	lncRNA	83	opposite	8561_ID	chr8	101394991	101395073	83	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9743	ENST00000584493.1	ENST00000438915.1_1	chr3	13759416	13759507	AC093611.2	-	miRNA	chr3	13692195	13788126	LINC00620	+	lncRNA	91	opposite	3227_ID	chr3	13759417	13759507	91	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9754	ENST00000584548.1	ENST00000422966.1_1	chr10	50193556	50193632	MIR4294	-	miRNA	chr10	50192608	50226942	AC060234.1	+	lncRNA	76	opposite	8490_ID	chr10	50193557	50193632	76	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9756	ENST00000584555.1	ENST00000514270.1_3	chr5	68774819	68775092	RN7SL616P	-	misc_RNA	chr5	68773298	68798293	AC145146.1	-	lncRNA	273	same	10309_ID	chr5	68774820	68775092	273	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9762	ENST00000584598.1	ENST00000423391.3_3	chr5	56777646	56777730	AC025470.1	-	miRNA	chr5	56775844	56778638	ACTBL2	-	protein_coding	84	same	2093_ID	chr5	56777647	56777730	84	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	1
9770	ENST00000584683.1_1	ENST00000360954.3_2	chr17	14230651	14232791	AC005224.2	+	lncRNA	chr17	14204397	14252721	HS3ST3B1	+	protein_coding	2140	same	253_ID	chr17	14230652	14232791	2140	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9809	ENST00000584896.1_1	ENST00000434239.4_5	chr18	5159330	5171025	AP005380.1	+	lncRNA	chr18	5142909	5197256	AKAIN1	-	protein_coding	11695	opposite	6300_ID	chr18	5159331	5171025	11695	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9823	ENST00000584986.1_3	ENST00000581474.1_1	chr17	27918720	27919259	AC104564.4	-	lncRNA	chr17	27887564	28034108	ABHD15-AS1	+	lncRNA	539	opposite	3558_ID	chr17	27918721	27919259	539	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9890	ENST00000585304.1	ENST00000552778.2_1	chr12	89986603	89986704	AC068641.1	+	miRNA	chr12	89954905	89988655	AC025034.1	+	lncRNA	101	same	2429_ID	chr12	89986604	89986704	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9936	ENST00000586411.1_3	ENST00000586348.1_1	chr17	43627146	43636104	AC091132.5	-	lncRNA	chr17	43623265	43640596	AC091132.4	+	lncRNA	8958	opposite	2979_ID	chr17	43627147	43636104	8958	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9941	ENST00000586474.1_3	ENST00000526991.3_2	chr18	11851412	11852750	CHMP1B-AS1	-	lncRNA	chr18	11851411	11854443	CHMP1B	+	protein_coding	1338	opposite	6642_ID	chr18	11851413	11852750	1338	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	1	1
9945	ENST00000586694.1_1	ENST00000250916.6_4	chr19	1860248	1862018	AC012615.4	+	lncRNA	chr19	1852397	1863578	KLF16	-	protein_coding	1770	opposite	1415_ID	chr19	1860249	1862018	1770	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9963	ENST00000587312.1_1	ENST00000498907.3_3	chr19	33792184	33792846	AC008738.5	+	lncRNA	chr19	33790839	33793440	CEBPA	-	protein_coding	662	opposite	793_ID	chr19	33792185	33792846	662	*	+	Exon	TRUE	FALSE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	1	1
9971	ENST00000587475.1_1	ENST00000398117.1_4	chr18	60818346	60818553	AC022726.1	-	lncRNA	chr18	60790578	60987361	BCL2	-	protein_coding	207	same	1901_ID	chr18	60818347	60818553	207	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10001	ENST00000588369.1_1	ENST00000590332.1_2	chr19	37582242	37583466	AC010632.2	+	lncRNA	chr19	37498758	37618344	ZNF420	+	protein_coding	1224	same	1118_ID	chr19	37582243	37583466	1224	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10055	ENST00000590376.1_3	ENST00000590332.1_2	chr19	37566014	37569507	AC010632.1	-	lncRNA	chr19	37498758	37618344	ZNF420	+	protein_coding	3493	opposite	1117_ID	chr19	37566015	37569507	3493	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10071	ENST00000591029.1_1	ENST00000587114.1_3	chr18	11454476	11465995	LINC01928	+	lncRNA	chr18	11447754	11489368	AP001109.1	-	lncRNA	11519	opposite	7702_ID	chr18	11454477	11465995	11519	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10122	ENST00000592720.1_1	ENST00000565797.2_1	chr19	1875014	1875991	AC012615.5	+	lncRNA	chr19	1874869	1876168	AC012615.1	-	lncRNA	977	opposite	1416_ID	chr19	1875015	1875991	977	*	+	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
10139	ENST00000593140.1_3	ENST00000592773.2_1	chr19	31156180	31159554	AC011478.1	-	lncRNA	chr19	31040252	31204445	ZNF536	+	protein_coding	54428	opposite	1245_ID	chr19	31156181	31159554	3374	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10176	ENST00000594473.1_3	ENST00000599802.1_1	chr19	58315208	58324772	ZNF552	-	protein_coding	chr19	58281037	58331307	ZNF586	+	protein_coding	11073	opposite	13054_ID	chr19	58315209	58324772	9564	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10251	ENST00000596816.1_3	ENST00000601040.1_1	chr19	16750777	16751479	AC024075.1	-	lncRNA	chr19	16741562	16754753	AC024075.3	+	lncRNA	702	opposite	1995_ID	chr19	16750778	16751479	702	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10299	ENST00000598112.2_1	ENST00000597226.1_1	chr19	16744607	16746080	AC024075.2	-	lncRNA	chr19	16721221	16747342	AC008764.2	+	lncRNA	1473	opposite	1998_ID	chr19	16744608	16746080	1473	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10328	ENST00000598988.1_1	ENST00000604424.1_1	chr19	41905276	41906270	AC011462.3	+	lncRNA	chr19	41856757	41916758	AC011462.1	+	processed_transcript	994	same	1220_ID	chr19	41905277	41906270	994	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10329	ENST00000599050.1_1	ENST00000322354.4_5	chr19	40949342	40949994	AC010271.1	+	lncRNA	chr19	40946750	40950242	SERTAD3	-	protein_coding	652	opposite	1044_ID	chr19	40949343	40949994	652	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10399	ENST00000601192.1_3	ENST00000269856.5_2	chr19	4791756	4795567	AC005523.2	-	lncRNA	chr19	4791745	4801285	FEM1A	+	protein_coding	3815	opposite	308_ID	chr19	4791757	4795567	3811	*	-	Exon	TRUE	FALSE	TRUE	TRUE	TRUE	TRUE	FALSE	FALSE	FALSE	1	1
10412	ENST00000601508.1_1	ENST00000429882.1_3	chr2	220362332	220362968	AC053503.4	-	lncRNA	chr2	220346794	220381599	ASIC4-AS1	-	lncRNA	636	same	2323_ID	chr2	220362333	220362968	636	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10446	ENST00000602396.1_1	ENST00000663930.1_3	chr14	71685816	71689441	AC004817.4	+	lncRNA	chr14	71645769	71710558	AC004817.5	-	lncRNA	3625	opposite	170_ID	chr14	71685817	71689441	3625	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10504	ENST00000602809.1_3	ENST00000602429.1_1	chr11	322185	322727	AC136475.8	-	lncRNA	chr11	318652	325631	AC136475.1	+	lncRNA	542	opposite	4159_ID	chr11	322186	322727	542	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10541	ENST00000603042.1_1	ENST00000603994.1_2	chr6	146058046	146058309	AL023806.2	-	lncRNA	chr6	146056705	146058354	AL023806.1	+	lncRNA	263	opposite	4496_ID	chr6	146058047	146058309	263	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
10542	ENST00000603052.1_1	ENST00000438897.1_1	chr2	112024444	112025050	AC068491.2	-	lncRNA	chr2	112022859	112037457	AC068491.1	+	lncRNA	606	opposite	2416_ID	chr2	112024445	112025050	606	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10544	ENST00000603053.2_4	ENST00000658444.1_1	chr7	92097693	92107260	ERVW-1	-	protein_coding	chr7	92090150	92124915	AC007566.1	+	lncRNA	9607	opposite	6933_ID	chr7	92097694	92107260	9567	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10562	ENST00000603612.1_1	ENST00000652200.1_1	chr2	75946245	75947144	AC005034.4	+	lncRNA	chr2	75937907	75955249	AC005034.6	+	lncRNA	899	same	221_ID	chr2	75946246	75947144	899	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10581	ENST00000604081.1_1	ENST00000513209.1_3	chr12	54387593	54389683	HOXC-AS2	-	retained_intron	chr12	54379628	54428672	AC012531.3	+	protein_coding	2976	opposite	7274_ID	chr12	54387594	54389683	2090	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10682	ENST00000606203.1_1	ENST00000566945.1_1	chr5	10195298	10197734	AC034229.3	-	lncRNA	chr5	10195232	10197740	AC034229.2	-	lncRNA	2436	same	2263_ID	chr5	10195299	10197734	2436	*	-	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
10694	ENST00000606287.1_1	ENST00000460508.3_3	chr2	74728843	74729492	AC005041.3	+	lncRNA	chr2	74724643	74730443	LBX2	-	protein_coding	649	opposite	224_ID	chr2	74728844	74729492	649	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10757	ENST00000606909.1_3	ENST00000383331.4_3	chr6	31167941	31169695	AL662844.3	-	lncRNA	chr6	31165536	31171745	HCG27	+	lncRNA	1754	opposite	5873_ID	chr6	31167942	31169695	1754	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10773	ENST00000607097.1_2	ENST00000523021.1_1	chr8	94927961	94928910	MIR378D2HG	-	lncRNA	chr8	94870034	94933576	PDP1	+	processed_transcript	949	opposite	8404_ID	chr8	94927962	94928910	949	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10792	ENST00000607282.1_1	ENST00000606988.1_1	chr10	22621515	22621910	AL158211.2	-	lncRNA	chr10	22621332	22621916	AL158211.4	+	lncRNA	395	opposite	5112_ID	chr10	22621516	22621910	395	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
10798	ENST00000607313.1	ENST00000581232.1_1	chr18	47018033	47018099	SNORD58B	-	snoRNA	chr18	47013708	47018248	AC100778.3	+	lncRNA	66	opposite	12428_ID	chr18	47018034	47018099	66	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10876	ENST00000607979.1_1	ENST00000412362.1_1	chr10	92757236	92757470	AL365434.2	-	lncRNA	chr10	92754376	92766147	AL365434.1	+	lncRNA	234	opposite	5544_ID	chr10	92757237	92757470	234	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10878	ENST00000607991.1_1	ENST00000416406.1_1	chr22	39139499	39139915	AL021707.7	+	lncRNA	chr22	39135007	39145046	AL021707.1	+	lncRNA	416	same	4456_ID	chr22	39139500	39139915	416	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10929	ENST00000608644.1_1	ENST00000649288.1_4	chr22	46448972	46449440	AL121672.3	+	lncRNA	chr22	46445357	46450024	PRR34	-	lncRNA	468	opposite	4742_ID	chr22	46448973	46449440	468	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10946	ENST00000608783.1_1	ENST00000663813.1_3	chr21	38737778	38738234	AP001437.1	-	lncRNA	chr21	38709683	38739160	AP001437.2	-	lncRNA	456	same	6133_ID	chr21	38737779	38738234	456	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10983	ENST00000609212.1_1	ENST00000416406.1_1	chr22	39138629	39139120	AL021707.6	+	lncRNA	chr22	39135007	39145046	AL021707.1	+	lncRNA	491	same	4453_ID	chr22	39138630	39139120	491	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11013	ENST00000609553.1_1	ENST00000393079.3_1	chr3	136556179	136557863	AC096992.2	-	lncRNA	chr3	136537925	136574730	SLC35G2	+	protein_coding	1684	opposite	3300_ID	chr3	136556180	136557863	1684	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11015	ENST00000609564.2_2	ENST00000515426.1_7	chr22	42665708	42675499	OGFRP1	+	lncRNA	chr22	42610852	42739622	TCF20	-	protein_coding	9832	opposite	9329_ID	chr22	42665709	42675499	9791	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11034	ENST00000609771.1_1	ENST00000631198.1_1	chr4	409906	410326	AC092574.1	-	lncRNA	chr4	379962	447859	AC092574.2	+	lncRNA	6729	opposite	3104_ID	chr4	409907	410326	420	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11075	ENST00000610134.1_1	ENST00000475951.1_3	chr2	73340291	73343035	AC010913.1	+	retained_intron	chr2	73316069	73383849	RAB11FIP5	-	processed_transcript	2890	opposite	1160_ID	chr2	73340292	73343035	2744	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11099	ENST00000610409.1_1	ENST00000471129.1_3	chr1	214157135	214159762	AC011700.1	-	lncRNA	chr1	214156523	214170568	PROX1	+	protein_coding	2627	opposite	1281_ID	chr1	214157136	214159762	2627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11137	ENST00000611368.1_1	ENST00000372861.5_2	chr20	43375282	43375842	AL118522.1	+	lncRNA	chr20	43374505	43380954	KCNK15	+	protein_coding	560	same	4735_ID	chr20	43375283	43375842	560	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11178	ENST00000612531.1_1	ENST00000546086.1_4	chr12	68820110	68821517	AC008033.3	-	lncRNA	chr12	68727032	68835996	LINC02384	-	lncRNA	1407	same	681_ID	chr12	68820111	68821517	1407	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11201	ENST00000612996.1_2	ENST00000643064.1_1	chr13	49106148	49106735	AL157813.1	-	lncRNA	chr13	48955385	49173572	RB1	+	protein_coding	587	opposite	5072_ID	chr13	49106149	49106735	587	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11212	ENST00000613261.1_1	ENST00000245304.5_2	chr13	98088199	98088422	AL442067.1	+	lncRNA	chr13	98086422	98121382	RAP2A	+	protein_coding	223	same	5606_ID	chr13	98088200	98088422	223	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11250	ENST00000614033.1_1	ENST00000245304.5_2	chr13	98089521	98089884	AL442067.2	+	lncRNA	chr13	98086422	98121382	RAP2A	+	protein_coding	363	same	5607_ID	chr13	98089522	98089884	363	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11278	ENST00000614810.1_1	ENST00000314852.2_3	chr15	75937360	75937783	AC105020.5	+	lncRNA	chr15	75931425	75941047	IMP3	-	protein_coding	423	opposite	3587_ID	chr15	75937361	75937783	423	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11279	ENST00000614815.1_1	ENST00000568956.2_2	chr19	56123855	56124463	AC008735.4	-	lncRNA	chr19	56117012	56128635	ZNF865	+	protein_coding	608	opposite	788_ID	chr19	56123856	56124463	608	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11290	ENST00000615076.1_1	ENST00000547748.1_3	chr12	47659447	47659891	AC008083.4	+	lncRNA	chr12	47631516	47672804	AC008083.2	-	lncRNA	444	opposite	697_ID	chr12	47659448	47659891	444	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11291	ENST00000615088.1_1	ENST00000619495.1_3	chr20	23470052	23470610	AL109954.2	-	lncRNA	chr20	23462281	23499691	AL109954.1	-	lncRNA	558	same	4717_ID	chr20	23470053	23470610	558	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11298	ENST00000615357.1_1	ENST00000614670.1_1	chr20	36731925	36733363	AL031651.1	-	lncRNA	chr20	36694483	36756182	RPRD1B	+	protein_coding	1438	opposite	4531_ID	chr20	36731926	36733363	1438	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11352	ENST00000616598.1_1	ENST00000566841.1_1	chr15	83688866	83689554	AC022558.3	+	lncRNA	chr15	83594635	83772195	AC022558.2	+	lncRNA	688	same	1890_ID	chr15	83688867	83689554	688	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11365	ENST00000616866.1_1	ENST00000604424.1_1	chr19	41879875	41880324	AC011462.4	+	lncRNA	chr19	41856757	41916758	AC011462.1	+	processed_transcript	449	same	1223_ID	chr19	41879876	41880324	449	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11404	ENST00000617867.1_1	ENST00000615265.1_1	chr17	36009161	36010922	AC243585.1	+	lncRNA	chr17	36002975	36044255	AC243571.2	+	lncRNA	1761	same	4278_ID	chr17	36009162	36010922	1761	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11416	ENST00000618230.1_2	ENST00000610712.1_3	chr18	32848181	32850202	AC011815.2	+	lncRNA	chr18	32831021	32870209	ZSCAN30	-	protein_coding	2021	opposite	1298_ID	chr18	32848182	32850202	2021	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11439	ENST00000618911.4_3	ENST00000514533.1_1	chr5	175810983	175815928	NOP16	-	protein_coding	chr5	175795852	175828866	ARL10	+	protein_coding	4988	opposite	9278_ID	chr5	175810984	175815928	4945	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11440	ENST00000618958.2_3	ENST00000612898.1_1	chr6	27805657	27806153	H2AC15	-	protein_coding	chr6	27805537	27807260	H2BC15	+	protein_coding	496	opposite	7208_ID	chr6	27805658	27806153	496	*	-	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
11455	ENST00000619323.1_2	ENST00000550290.2_2	chr12	62997688	62998179	AC048341.2	+	lncRNA	chr12	62996531	63015993	AC048341.1	+	lncRNA	491	same	2309_ID	chr12	62997689	62998179	491	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11468	ENST00000619612.1_1	ENST00000486502.1_1	chr13	108919667	108920082	AL157762.1	+	lncRNA	chr13	108903587	108922765	TNFSF13B	+	processed_transcript	415	same	5066_ID	chr13	108919668	108920082	415	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11539	ENST00000620937.1_1	ENST00000583025.1_1	chr17	80202645	80203467	AC132872.3	+	lncRNA	chr17	80195045	80219005	SLC16A3	+	protein_coding	822	same	4105_ID	chr17	80202646	80203467	822	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11599	ENST00000622038.1_1	ENST00000663056.1_1	chr13	108522730	108525720	AL136964.1	+	lncRNA	chr13	108521170	108585851	AL359436.1	+	lncRNA	2990	same	4921_ID	chr13	108522731	108525720	2990	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11642	ENST00000623288.1_1	ENST00000511650.1_1	chr5	177394004	177394458	AC106795.5	+	lncRNA	chr5	177366622	177410055	AC106795.3	+	lncRNA	454	same	3649_ID	chr5	177394005	177394458	454	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11646	ENST00000623407.1_2	ENST00000624192.1_3	chr5	140561983	140568155	AC244517.6	+	lncRNA	chr5	140516264	140621312	AC244517.11	-	lncRNA	6172	opposite	4296_ID	chr5	140561984	140568155	6172	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11672	ENST00000623995.1_1	ENST00000624192.1_3	chr5	140557429	140561944	AC244517.8	+	lncRNA	chr5	140516264	140621312	AC244517.11	-	lncRNA	4515	opposite	4299_ID	chr5	140557430	140561944	4515	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11698	ENST00000624549.1_3	ENST00000624192.1_3	chr5	140562975	140580969	AC244517.4	-	lncRNA	chr5	140516264	140621312	AC244517.11	-	lncRNA	17994	same	4295_ID	chr5	140562976	140580969	17994	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11700	ENST00000624656.1_1	ENST00000475962.5_3	chr22	39529094	39532765	AL031846.2	+	lncRNA	chr22	39516171	39545837	CBX7	-	processed_transcript	3671	opposite	4564_ID	chr22	39529095	39532765	3671	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11702	ENST00000624688.2_3	ENST00000654542.1_3	chr3	126911973	126917028	C3orf56	+	protein_coding	chr3	126884348	126937316	AC112482.2	-	lncRNA	5055	opposite	6512_ID	chr3	126911974	126917028	5055	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11725	ENST00000625144.1_3	ENST00000624192.1_3	chr5	140571171	140573661	AC244517.7	-	lncRNA	chr5	140516264	140621312	AC244517.11	-	lncRNA	2490	same	4297_ID	chr5	140571172	140573661	2490	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11808	ENST00000632517.1_2	ENST00000633022.1_1	chr1	114575014	114577133	AL591742.2	+	lncRNA	chr1	114523121	114578194	OLFML3	+	processed_transcript	2119	same	5798_ID	chr1	114575015	114577133	2119	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11813	ENST00000633189.1_1	ENST00000524258.2_4	chr8	1706373	1708613	AC100810.3	-	lncRNA	chr8	1703943	1719627	CLN8	+	protein_coding	2240	opposite	3423_ID	chr8	1706374	1708613	2240	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11829	ENST00000634673.1_1	ENST00000398117.1_4	chr18	60874854	60875401	AC022726.2	+	lncRNA	chr18	60790578	60987361	BCL2	-	protein_coding	547	opposite	1902_ID	chr18	60874855	60875401	547	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11863	ENST00000636508.1_2	ENST00000535817.1_1	chr11	62599790	62600275	TEX54	-	protein_coding	chr11	62599705	62601515	AP001160.1	+	lncRNA	485	opposite	12663_ID	chr11	62599791	62600275	485	*	-	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11889	ENST00000637957.1_1	ENST00000606202.1_3	chr6	149567230	149576551	AL031056.2	+	lncRNA	chr6	149539776	149699665	TAB2	+	protein_coding	9321	same	4505_ID	chr6	149567231	149576551	9321	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11916	ENST00000641044.1_2	ENST00000478806.1_4	chr7	144009556	144019761	OR2A1	+	protein_coding	chr7	143948500	144052800	AC074386.1	-	lncRNA	10205	opposite	9374_ID	chr7	144009557	144019761	10205	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11958	ENST00000641874.1_2	ENST00000508964.1_3	chr3	97849564	97857392	OR5H1	+	protein_coding	chr3	97818751	97866978	AC117460.1	-	lncRNA	7828	opposite	9456_ID	chr3	97849565	97857392	7828	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12056	ENST00000648326.1_2	ENST00000454396.2_1	chr6	3849606	3851551	FAM50B	+	protein_coding	chr6	3832166	3855971	AL391422.3	+	lncRNA	1948	same	6990_ID	chr6	3849607	3851551	1945	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12066	ENST00000648436.1_3	ENST00000438284.2_1	chr3	11235124	11267563	AC083855.2	-	lncRNA	chr3	11178778	11302461	HRH1	+	protein_coding	32439	opposite	2718_ID	chr3	11235125	11267563	32439	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12071	ENST00000648470.1_1	ENST00000527671.1_3	chr11	18163887	18166689	AC090099.2	+	lncRNA	chr11	18161732	18211042	AC090099.1	-	lncRNA	2802	opposite	2868_ID	chr11	18163888	18166689	2802	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12106	ENST00000648941.1_1	ENST00000331351.6_2	chr16	25799307	26053668	AC093516.1	+	lncRNA	chr16	25703279	26149006	HS3ST4	+	protein_coding	254361	same	3213_ID	chr16	25799308	26053668	254361	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12134	ENST00000649466.1_1	ENST00000344697.3_4	chr3	43129727	43131935	AC092042.4	+	lncRNA	chr3	43120725	43147571	POMGNT2	-	protein_coding	2208	opposite	3032_ID	chr3	43129728	43131935	2208	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12154	ENST00000649944.1_1	ENST00000665797.1_3	chr16	66772140	66773625	AC018557.2	+	lncRNA	chr16	66763054	66775319	AC018557.3	+	lncRNA	1485	same	1635_ID	chr16	66772141	66773625	1485	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12177	ENST00000650404.1_3	ENST00000560188.1_1	chr15	69173001	69221280	AC087639.2	-	lncRNA	chr15	69110559	69238461	SPESP1	+	processed_transcript	48279	opposite	2840_ID	chr15	69173002	69221280	48279	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12190	ENST00000650639.1_1	ENST00000594199.3_4	chrX	103357213	103360533	ZCCHC18	+	protein_coding	chrX	103343897	103401690	SLC25A53	-	protein_coding	3712	opposite	13007_ID	chrX	103357214	103360533	3320	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12204	ENST00000651017.1_1	ENST00000419809.1_3	chr2	67904630	67907930	AC010987.1	+	lncRNA	chr2	67792735	67911209	AC007422.1	-	lncRNA	3300	opposite	1170_ID	chr2	67904631	67907930	3300	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12216	ENST00000651166.1_1	ENST00000429882.1_3	chr2	220360846	220363009	SPEGNB	+	protein_coding	chr2	220346794	220381599	ASIC4-AS1	-	lncRNA	2163	opposite	12524_ID	chr2	220360847	220363009	2163	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12237	ENST00000651711.1_3	ENST00000669532.1_1	chr2	76918132	76919615	AC068616.1	-	lncRNA	chr2	76912100	76926122	AC068616.3	+	lncRNA	1483	opposite	2425_ID	chr2	76918133	76919615	1483	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12287	ENST00000652584.1_3	ENST00000639259.1_1	chr2	211051849	211089447	ACADL	-	processed_transcript	chr2	211036409	211098690	AC006994.1	+	lncRNA	38322	opposite	4320_ID	chr2	211051850	211089447	37598	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12318	ENST00000653384.1_3	ENST00000522768.1_1	chr8	17665869	17679692	AC027117.1	+	lncRNA	chr8	17658853	17718578	AC027117.2	+	lncRNA	13823	same	2192_ID	chr8	17665870	17679692	13823	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12365	ENST00000654775.1_1	ENST00000669726.1_1	chr14	24740931	24748295	AL096870.10	+	lncRNA	chr14	24740418	24768052	AL096870.12	+	lncRNA	7364	same	4693_ID	chr14	24740932	24748295	7364	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12441	ENST00000656192.1_1	ENST00000484092.1_4	chr3	117438705	117512655	AC092691.3	+	lncRNA	chr3	117391000	117716439	AC092691.1	-	lncRNA	74526	opposite	3123_ID	chr3	117438706	117512655	73950	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12442	ENST00000656210.1_1	ENST00000643064.1_1	chr13	49105935	49130494	AL157813.2	+	lncRNA	chr13	48955385	49173572	RB1	+	protein_coding	24559	same	5073_ID	chr13	49105936	49130494	24559	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12452	ENST00000656618.1_3	ENST00000292433.4_2	chr19	13263065	13263727	AC011446.3	-	lncRNA	chr19	13261224	13265725	IER2	+	protein_coding	662	opposite	1215_ID	chr19	13263066	13263727	662	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12461	ENST00000656765.1_1	ENST00000442721.1_4	chr6	32076182	32080626	AL662884.5	+	lncRNA	chr6	32065952	32083111	TNXB	-	protein_coding	4444	opposite	5876_ID	chr6	32076183	32080626	4444	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12569	ENST00000658653.1_1	ENST00000656462.1_3	chr14	24476393	24496991	AL136419.3	+	lncRNA	chr14	24407970	24521718	DHRS4-AS1	-	lncRNA	20598	opposite	4911_ID	chr14	24476394	24496991	20598	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12574	ENST00000658759.1_1	ENST00000444059.2_6	chr1	112282200	112290420	INKA2-AS1	+	lncRNA	chr1	112269127	112298446	INKA2	-	processed_transcript	8220	opposite	7357_ID	chr1	112282201	112290420	8220	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12590	ENST00000659052.1_1	ENST00000515617.1_2	chr12	54475519	54496483	AC023794.2	+	lncRNA	chr12	54452037	54516018	FLJ12825	+	lncRNA	20964	same	1967_ID	chr12	54475520	54496483	20964	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12591	ENST00000659069.1_3	ENST00000484092.1_4	chr3	117397544	117409852	LINC02024	-	lncRNA	chr3	117391000	117716439	AC092691.1	-	lncRNA	12313	same	7715_ID	chr3	117397545	117409852	12308	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12600	ENST00000659208.1_3	ENST00000552238.1_1	chr12	97549011	97554316	AC007656.4	-	lncRNA	chr12	97379433	97579387	AC007656.2	+	lncRNA	5305	opposite	627_ID	chr12	97549012	97554316	5305	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12712	ENST00000661759.1_3	ENST00000657441.1_3	chr5	33229621	33284748	LINC02160	+	lncRNA	chr5	33022066	33298106	AC010343.3	-	lncRNA	55127	opposite	7741_ID	chr5	33229622	33284748	55127	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12716	ENST00000661805.1_3	ENST00000532353.1_1	chr6	111826509	111832274	AL008730.1	-	lncRNA	chr6	111804757	111919505	TRAF3IP2-AS1	+	lncRNA	5765	opposite	4435_ID	chr6	111826510	111832274	5765	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12717	ENST00000661854.1_3	ENST00000425449.1_1	chr1	115899284	115907518	AL512638.3	-	lncRNA	chr1	115825654	115910693	NGF-AS1	+	lncRNA	8234	opposite	5690_ID	chr1	115899285	115907518	8234	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12729	ENST00000662072.1_1	ENST00000652941.1_3	chr8	47726546	47729586	AC021451.3	+	lncRNA	chr8	47722317	47730720	AC021451.2	-	lncRNA	3040	opposite	1789_ID	chr8	47726547	47729586	3040	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12730	ENST00000662076.1_3	ENST00000664971.1_1	chr11	119858660	119865418	LINC02744	-	lncRNA	chr11	119846819	119880297	AP001360.3	+	lncRNA	7086	opposite	7796_ID	chr11	119858661	119865418	6758	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12738	ENST00000662373.1_3	ENST00000303592.3_3	chr22	38830311	38832691	Z97056.3	+	lncRNA	chr22	38822331	38851205	KCNJ4	-	protein_coding	2380	opposite	12960_ID	chr22	38830312	38832691	2380	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12859	ENST00000664799.1_3	ENST00000660721.1_1	chr12	115171561	115173049	AC026765.4	-	lncRNA	chr12	115120096	115205793	AC026765.3	+	lncRNA	1488	opposite	2169_ID	chr12	115171562	115173049	1488	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12876	ENST00000665073.1_3	ENST00000620026.1_1	chr6	158717702	158724404	AL360169.3	-	lncRNA	chr6	158653267	158733694	TULP4	+	processed_transcript	6702	opposite	5519_ID	chr6	158717703	158724404	6702	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12948	ENST00000666731.1_1	ENST00000431924.2_4	chr22	39071880	39073805	AL021707.9	+	lncRNA	chr22	39063589	39077775	AL021707.2	-	lncRNA	1925	opposite	4461_ID	chr22	39071881	39073805	1925	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12950	ENST00000666804.1_1	ENST00000590398.5_1	chr17	75544210	75546581	AC021683.6	+	lncRNA	chr17	75543022	75559325	AC021683.2	+	lncRNA	2371	same	1800_ID	chr17	75544211	75546581	2371	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
12992	ENST00000667751.1_3	ENST00000636161.1_1	chr1	161369787	161371658	AL592295.5	+	lncRNA	chr1	161369198	161392214	AL592295.4	+	lncRNA	1871	same	5809_ID	chr1	161369788	161371658	1871	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13001	ENST00000667846.1_3	ENST00000669335.1_3	chr2	105319107	105322271	AC068057.1	+	lncRNA	chr2	105272592	105339424	AC068057.3	-	lncRNA	3164	opposite	2389_ID	chr2	105319108	105322271	3164	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13012	ENST00000668046.1_3	ENST00000669704.1_1	chr11	10905704	10920911	AC069360.1	-	lncRNA	chr11	10879765	10930519	ZBED5-AS1	+	lncRNA	15207	opposite	2486_ID	chr11	10905705	10920911	15207	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13029	ENST00000668647.1_1	ENST00000552238.1_1	chr12	97419107	97521404	AC007656.1	+	lncRNA	chr12	97379433	97579387	AC007656.2	+	lncRNA	103606	same	626_ID	chr12	97419108	97521404	102297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13045	ENST00000668894.1_3	ENST00000659636.1_1	chr2	240415280	240418391	AC023787.3	-	lncRNA	chr2	240361336	240453057	AC023787.2	+	lncRNA	3111	opposite	1965_ID	chr2	240415281	240418391	3111	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13085	ENST00000669652.1_1	ENST00000663868.1_3	chr2	43355957	43359138	AC010883.2	+	lncRNA	chr2	43323313	43359619	LINC02580	-	lncRNA	3181	opposite	1154_ID	chr2	43355958	43359138	3181	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13096	ENST00000669879.1_1	ENST00000655152.1_1	chr10	135402417	135402917	AL731769.1	+	lncRNA	chr10	135379362	135443011	AL731769.2	+	lncRNA	500	same	5904_ID	chr10	135402418	135402917	500	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13099	ENST00000669948.1_3	ENST00000664475.1_3	chr8	101440854	101444954	AP003472.2	-	lncRNA	chr8	101392713	101476841	AP003472.1	-	lncRNA	5168	same	6263_ID	chr8	101440855	101444954	4100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13106	ENST00000670164.1_3	ENST00000331238.7_4	chr17	1921116	1923960	AC099684.1	+	lncRNA	chr17	1837970	1928628	RTN4RL1	-	protein_coding	2991	opposite	3387_ID	chr17	1921117	1923960	2844	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13129	ENST00000670784.1_3	ENST00000659063.1_3	chr6	164377330	164381219	AL136225.1	-	lncRNA	chr6	164348153	164431012	AL078602.1	+	lncRNA	3889	opposite	4895_ID	chr6	164377331	164381219	3889	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13210	ENST00000675637.1_1	ENST00000425449.1_1	chr1	115828537	115880877	NGF	-	protein_coding	chr1	115825654	115910693	NGF-AS1	+	lncRNA	52340	opposite	9259_ID	chr1	115828538	115880877	52340	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13213	ENST00000676205.1_1	ENST00000267984.4_2	chr15	81294482	81294620	AC068870.4	+	protein_coding	chr15	81293263	81298129	TLNRD1	+	protein_coding	138	same	2453_ID	chr15	81294483	81294620	138	*	+	Exon	TRUE	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
13218	ENST00000677743.1_1	ENST00000570515.1_3	chr16	3054132	3054860	AC004233.4	+	protein_coding	chr16	3053431	3055102	AC004233.1	-	lncRNA	728	opposite	116_ID	chr16	3054133	3054860	728	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
44100	ENST00000228811.8_7	ENST00000538332.2_9	chr12	10998447	11002074	PRR4	-	protein_coding	chr12	10977558	11035256	PRH1	-	protein_coding	3627	same	9655_ID	chr12	10998448	11002074	3627	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13610	ENST00000256319.7_4	ENST00000554132.1_1	chr14	76116133	76127219	ERG28	-	protein_coding	chr14	76099967	76129507	TTLL5	+	processed_transcript	11086	opposite	6923_ID	chr14	76116134	76127219	11086	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
40610	ENST00000312251.8_4	ENST00000588778.1_1	chr16	5074844	5083936	NAGPA	-	protein_coding	chr16	5060909	5092251	NAGPA-AS1	+	lncRNA	9298	opposite	9222_ID	chr16	5074845	5083936	9092	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
50210	ENST00000324630.5_3	ENST00000528607.1_3	chr11	70204303	70204783	AP000487.2	-	lncRNA	chr11	70128472	70209474	AP002336.2	-	lncRNA	480	same	5995_ID	chr11	70204304	70204783	480	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
70710	ENST00000357771.5_4	ENST00000667635.1_1	chr1	39339740	39347259	GJA9	-	protein_coding	chr1	39325644	39430710	AL139260.1	+	lncRNA	7519	opposite	7122_ID	chr1	39339741	39347259	7519	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
72610	ENST00000359823.2_1	ENST00000669284.1_3	chr2	30122462	30130065	AC106870.1	+	lncRNA	chr2	30064052	30178271	AC106870.3	-	lncRNA	7603	opposite	3662_ID	chr2	30122463	30130065	7603	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
75010	ENST00000362102.1	ENST00000646845.1_1	chr19	52196038	52196117	MIRLET7E	+	miRNA	chr19	52192380	52197808	SPACA6	+	protein_coding	79	same	9135_ID	chr19	52196039	52196117	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
78510	ENST00000362201.2	ENST00000582938.1_3	chr17	28444096	28444190	MIR423	+	miRNA	chr17	28417383	28444515	AC104984.2	-	lncRNA	94	opposite	8451_ID	chr17	28444097	28444190	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
85310	ENST00000362556.1	ENST00000583666.2_4	chr17	56743897	56744058	RNU1-108P	-	snRNA	chr17	56737784	56769379	IGBP1P2	-	protein_coding	161	same	10554_ID	chr17	56743898	56744058	161	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
110410	ENST00000363948.1	ENST00000557467.1_3	chr14	57291703	57291810	RNU6-1204P	+	snRNA	chr14	57284471	57360428	AL161757.4	-	lncRNA	107	opposite	10909_ID	chr14	57291704	57291810	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
113810	ENST00000364127.1	ENST00000583666.2_4	chr17	56756887	56757051	RNU1-85P	-	snRNA	chr17	56737784	56769379	IGBP1P2	-	protein_coding	164	same	10607_ID	chr17	56756888	56757051	164	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13321	ENST00000365211.1	ENST00000558980.1_3	chr15	86194752	86194859	RNU6-1280P	-	snRNA	chr15	86162853	86214179	AC087286.2	-	lncRNA	107	same	10975_ID	chr15	86194753	86194859	107	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13751	ENST00000365522.1	ENST00000441093.1_1	chr4	6998738	6999055	RN7SKP292	+	misc_RNA	chr4	6997067	7000685	AC097382.1	+	lncRNA	317	same	9885_ID	chr4	6998739	6999055	317	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1411	ENST00000366314.4_1	ENST00000653746.1_1	chr16	85316563	85319569	LINC00311	+	lncRNA	chr16	85260808	85342782	AC092275.1	+	lncRNA	3006	same	7542_ID	chr16	85316564	85319569	3006	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
15111	ENST00000373366.3_2	ENST00000542839.1_3	chr1	35246814	35251965	GJB3	+	protein_coding	chr1	35227026	35253698	AL121988.1	-	lncRNA	5156	opposite	7124_ID	chr1	35246815	35251965	5151	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
17541	ENST00000384132.1	ENST00000584203.1_3	chr17	17073396	17073503	RNU6-767P	+	snRNA	chr17	17071259	17088868	AC055811.1	-	lncRNA	107	opposite	11486_ID	chr17	17073397	17073503	107	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
17701	ENST00000384190.1	ENST00000583666.2_4	chr17	56754934	56755098	RNU1-52P	-	snRNA	chr17	56737784	56769379	IGBP1P2	-	protein_coding	164	same	10588_ID	chr17	56754935	56755098	164	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
18711	ENST00000384479.1	ENST00000554859.1_3	chr14	102269563	102269668	RNU6-790P	+	snRNA	chr14	102262891	102276658	AL137779.2	-	lncRNA	105	opposite	11502_ID	chr14	102269564	102269668	105	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
19011	ENST00000384549.1	ENST00000670881.1_3	chr15	25339183	25339275	SNORD116-24	+	snoRNA	chr15	25336932	25352616	AC124312.5	-	lncRNA	92	opposite	12339_ID	chr15	25339184	25339275	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
19341	ENST00000384631.1	ENST00000522589.1_3	chr8	28273964	28274068	RNU6-178P	+	snRNA	chr8	28273040	28277572	AC025871.2	-	lncRNA	104	opposite	11053_ID	chr8	28273965	28274068	104	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
19951	ENST00000384819.1	ENST00000646845.1_1	chr19	52195864	52195934	MIR99B	+	miRNA	chr19	52192380	52197808	SPACA6	+	protein_coding	70	same	9126_ID	chr19	52195865	52195934	70	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
20021	ENST00000384825.1	ENST00000587459.1_1	chr17	74732531	74732630	MIR636	-	miRNA	chr17	74729059	74734604	AC005837.2	+	protein_coding	99	opposite	9042_ID	chr17	74732532	74732630	99	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
20231	ENST00000384852.1	ENST00000465941.1_3	chr7	27209098	27209183	MIR196B	-	miRNA	chr7	27203282	27214799	HOXA9	-	processed_transcript	85	same	8155_ID	chr7	27209099	27209183	85	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
20441	ENST00000384874.1	ENST00000434112.1_1	chr1	151518271	151518367	MIR554	+	miRNA	chr1	151512991	151534331	AL365436.2	+	lncRNA	96	same	8929_ID	chr1	151518272	151518367	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
21311	ENST00000385036.1	ENST00000570269.2_3	chr3	114035321	114035416	MIR568	-	miRNA	chr3	114033347	114048561	AC093010.2	-	lncRNA	95	same	8953_ID	chr3	114035322	114035416	95	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
22451	ENST00000385273.1	ENST00000646845.1_1	chr19	52196506	52196592	MIR125A	+	miRNA	chr19	52192380	52197808	SPACA6	+	protein_coding	86	same	8011_ID	chr19	52196507	52196592	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
22581	ENST00000385293.1	ENST00000642841.1_3	chr12	57912945	57913042	MIR616	-	miRNA	chr12	57911494	57914263	AC022506.1	-	protein_coding	97	same	9020_ID	chr12	57912946	57913042	97	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
22651	ENST00000386062.1	ENST00000604922.1_3	chr4	152024978	152025043	SNORD73A	+	snoRNA	chr4	152023902	152041963	SH3D19	-	processed_transcript	65	opposite	12446_ID	chr4	152024979	152025043	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
22751	ENST00000388006.1	ENST00000567101.2_4	chr17	46709851	46709921	MIR196A1	-	miRNA	chr17	46684988	46710934	HOXB7	-	processed_transcript	70	same	8151_ID	chr17	46709852	46709921	70	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
23141	ENST00000390235.1	ENST00000412240.1_3	chr21	37093012	37093106	MIR802	+	miRNA	chr21	37085436	37105240	AF015720.1	-	lncRNA	94	opposite	9092_ID	chr21	37093013	37093106	94	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
23691	ENST00000390888.1	ENST00000580873.1_3	chr17	29188860	29188956	RNU6-298P	+	snRNA	chr17	29161342	29190046	AC130324.2	-	lncRNA	96	opposite	11139_ID	chr17	29188861	29188956	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
24761	ENST00000392485.2_3	ENST00000587459.1_1	chr17	74730196	74733415	SRSF2	-	protein_coding	chr17	74729059	74734604	AC005837.2	+	protein_coding	3219	opposite	12547_ID	chr17	74730197	74733415	3219	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
25221	ENST00000397572.5_6	ENST00000667635.1_1	chr1	39328164	39339020	MYCBP	-	protein_coding	chr1	39325644	39430710	AL139260.1	+	lncRNA	10876	opposite	9191_ID	chr1	39328165	39339020	10856	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
25651	ENST00000401133.1	ENST00000451784.1_3	chr1	166123979	166124035	MIR921	-	miRNA	chr1	166117018	166134332	AL596087.3	-	lncRNA	56	same	9103_ID	chr1	166123980	166124035	56	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
27261	ENST00000408300.1	ENST00000505389.1_1	chr4	183090445	183090531	MIR1305	+	miRNA	chr4	183066004	183111535	AC108142.1	+	lncRNA	86	same	8077_ID	chr4	183090446	183090531	86	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
27711	ENST00000408406.1	ENST00000528607.1_3	chr11	70130060	70130176	MIR548K	+	miRNA	chr11	70128472	70209474	AP002336.2	-	lncRNA	116	opposite	8908_ID	chr11	70130061	70130176	116	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
29431	ENST00000408810.1	ENST00000610060.1_1	chr3	125509246	125509395	MIR548I1	-	miRNA	chr3	125493556	125516796	AC092902.2	+	lncRNA	149	opposite	8904_ID	chr3	125509247	125509395	149	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
29671	ENST00000408861.1	ENST00000549527.1_3	chr12	79813036	79813101	MIR1252	+	miRNA	chr12	79734984	79897176	AC027288.3	-	lncRNA	65	opposite	8003_ID	chr12	79813037	79813101	65	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
30261	ENST00000410175.1	ENST00000655986.1_3	chr5	124686560	124686824	RN7SKP117	-	misc_RNA	chr5	124669061	124748945	AC116362.1	-	lncRNA	264	same	9770_ID	chr5	124686561	124686824	264	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
31751	ENST00000410873.1	ENST00000301944.3_4	chr19	17568065	17568166	AC010319.1	+	miRNA	chr19	17566233	17571735	NXNL1	-	protein_coding	101	opposite	1055_ID	chr19	17568066	17568166	101	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
32221	ENST00000411124.1	ENST00000436423.1_3	chr22	26359948	26360239	RN7SKP169	-	misc_RNA	chr22	26355039	26379492	Z98949.2	-	lncRNA	291	same	9799_ID	chr22	26359949	26360239	291	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
32821	ENST00000411690.2_1	ENST00000670698.1_3	chr13	110705631	110707299	LINC00396	+	lncRNA	chr13	110688638	110781483	AL390755.1	-	lncRNA	1668	opposite	7546_ID	chr13	110705632	110707299	1668	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
36641	ENST00000421411.1_1	ENST00000669284.1_3	chr2	30113236	30115220	AC106870.2	+	lncRNA	chr2	30064052	30178271	AC106870.3	-	lncRNA	1984	opposite	3664_ID	chr2	30113237	30115220	1984	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
38851	ENST00000427892.1_3	ENST00000446238.1_3	chr1	75595658	75598261	AC099786.2	-	lncRNA	chr1	75593514	75598743	AC099786.1	-	lncRNA	2603	same	3392_ID	chr1	75595659	75598261	2603	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
42021	ENST00000436529.2_1	ENST00000615718.1_4	chr21	30743267	30746029	BACH1-IT2	+	lncRNA	chr21	30742379	30748659	BACH1-AS1	-	lncRNA	3212	opposite	6399_ID	chr21	30743268	30746029	2762	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
42051	ENST00000436608.1_3	ENST00000413431.1_3	chr10	76783232	76784009	AC018511.1	-	lncRNA	chr10	76762812	76784932	AC018511.2	-	lncRNA	777	same	1624_ID	chr10	76783233	76784009	777	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
42921	ENST00000439182.2_2	ENST00000327876.5_3	chr2	47754909	47762338	MSH2-OT1	+	lncRNA	chr2	47736428	47798124	KCNK12	-	protein_coding	8192	opposite	9176_ID	chr2	47754910	47762338	7429	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
43181	ENST00000439788.1_3	ENST00000428747.1_3	chr1	15660661	15661960	AL031283.2	-	lncRNA	chr1	15653175	15670372	FHAD1-AS1	-	lncRNA	1299	same	4514_ID	chr1	15660662	15661960	1299	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
45441	ENST00000446433.1_3	ENST00000456078.1_1	chr1	234404328	234408246	SLC35F3-AS1	-	lncRNA	chr1	234397451	234410211	AL122008.1	+	lncRNA	3918	opposite	12091_ID	chr1	234404329	234408246	3918	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
47751	ENST00000452788.1_3	ENST00000433228.1_1	chrX	17570469	17575508	NHS-AS1	-	lncRNA	chrX	17546557	17605281	Z93022.1	+	lncRNA	5039	opposite	9262_ID	chrX	17570470	17575508	5039	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
48201	ENST00000454037.1_3	ENST00000660016.1_3	chr4	758274	758862	AC139887.1	-	lncRNA	chr4	753989	775637	AC139887.2	-	lncRNA	588	same	4214_ID	chr4	758275	758862	588	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
48491	ENST00000454994.3_5	ENST00000667635.1_1	chr1	39330174	39347289	AL139260.3	-	nonsense_mediated_decay	chr1	39325644	39430710	AL139260.1	+	lncRNA	17117	opposite	5026_ID	chr1	39330175	39347289	17115	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
50111	ENST00000458833.1	ENST00000549527.1_3	chr12	79742098	79742171	AC078917.1	+	miRNA	chr12	79734984	79897176	AC027288.3	-	lncRNA	73	opposite	2603_ID	chr12	79742099	79742171	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
52291	ENST00000465365.6_3	ENST00000643064.1_1	chr13	48963702	49018803	LPAR6	-	processed_transcript	chr13	48955385	49173572	RB1	+	protein_coding	55138	opposite	7848_ID	chr13	48963703	49018803	55101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
52621	ENST00000467794.1_3	ENST00000661961.1_1	chr3	156158945	156164694	KCNAB1-AS1	-	lncRNA	chr3	155861358	156258416	AC091607.2	+	lncRNA	5749	opposite	7404_ID	chr3	156158946	156164694	5749	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
53701	ENST00000473876.1_3	ENST00000661961.1_1	chr3	155933348	155945672	KCNAB1-AS2	-	lncRNA	chr3	155861358	156258416	AC091607.2	+	lncRNA	12324	opposite	7406_ID	chr3	155933349	155945672	12324	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
54811	ENST00000482328.2	ENST00000489552.1_5	chr7	140345643	140345924	RN7SL771P	+	misc_RNA	chr7	140301925	140373793	DENND2A	-	protein_coding	281	opposite	10421_ID	chr7	140345644	140345924	281	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
55201	ENST00000484915.2	ENST00000557467.1_3	chr14	57291091	57291374	RN7SL461P	-	misc_RNA	chr14	57284471	57360428	AL161757.4	-	lncRNA	283	same	10203_ID	chr14	57291092	57291374	283	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
55531	ENST00000487179.1_2	ENST00000478806.1_4	chr7	143963793	143966381	CTAGE8	-	protein_coding	chr7	143948500	144052800	AC074386.1	-	lncRNA	2588	same	6730_ID	chr7	143963794	143966381	2588	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
57071	ENST00000498361.2	ENST00000584203.1_3	chr17	17081728	17082020	RN7SL775P	+	misc_RNA	chr17	17071259	17088868	AC055811.1	-	lncRNA	292	opposite	10423_ID	chr17	17081729	17082020	292	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
57651	ENST00000502275.1	ENST00000655986.1_3	chr5	124705857	124706617	RP11-395P13.3	-	lincRNA	chr5	124669061	124748945	AC116362.1	-	lncRNA	760	same	11900_ID	chr5	124705858	124706617	760	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
58941	ENST00000506562.1_3	ENST00000654632.1_1	chr5	96523793	96537584	AC008883.1	-	lncRNA	chr5	96519530	96551778	AC008883.3	+	lncRNA	13791	opposite	825_ID	chr5	96523794	96537584	13791	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
59231	ENST00000507341.1	ENST00000655986.1_3	chr5	124704260	124704842	RP11-395P13.2	+	lincRNA	chr5	124669061	124748945	AC116362.1	-	lncRNA	582	opposite	11899_ID	chr5	124704261	124704842	582	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
59731	ENST00000509010.1	ENST00000655986.1_3	chr5	124731071	124731673	RP11-395P13.6	-	lincRNA	chr5	124669061	124748945	AC116362.1	-	lncRNA	602	same	11907_ID	chr5	124731072	124731673	602	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
60181	ENST00000510619.2_1	ENST00000528869.1_3	chr11	35234096	35235554	AL133330.1	+	lncRNA	chr11	35231889	35236532	CD44-AS1	-	lncRNA	1458	opposite	4842_ID	chr11	35234097	35235554	1458	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
60491	ENST00000511583.1	ENST00000655986.1_3	chr5	124718551	124719148	RP11-395P13.5	-	lincRNA	chr5	124669061	124748945	AC116362.1	-	lncRNA	597	same	11905_ID	chr5	124718552	124719148	597	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
60531	ENST00000511631.1	ENST00000655986.1_3	chr5	124712526	124713132	RP11-395P13.4	+	lincRNA	chr5	124669061	124748945	AC116362.1	-	lncRNA	606	opposite	11902_ID	chr5	124712527	124713132	606	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
62451	ENST00000516006.1	ENST00000670881.1_3	chr15	25344645	25344741	SNORD116-26	+	snoRNA	chr15	25336932	25352616	AC124312.5	-	lncRNA	96	opposite	12344_ID	chr15	25344646	25344741	96	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
62711	ENST00000516087.1	ENST00000670881.1_3	chr15	25346721	25346813	SNORD116-27	+	snoRNA	chr15	25336932	25352616	AC124312.5	-	lncRNA	92	opposite	12345_ID	chr15	25346722	25346813	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
64181	ENST00000516517.1	ENST00000670881.1_3	chr15	25342809	25342901	SNORD116-25	+	snoRNA	chr15	25336932	25352616	AC124312.5	-	lncRNA	92	opposite	12341_ID	chr15	25342810	25342901	92	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
65951	ENST00000517028.1	ENST00000556568.1_3	chr14	58304071	58304378	RN7SKP99	-	misc_RNA	chr14	58070725	58448912	SLC35F4	-	processed_transcript	307	same	9941_ID	chr14	58304072	58304378	307	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
66481	ENST00000517162.1	ENST00000580225.1_1	chr17	20193569	20193671	RNU6-1057P	+	snRNA	chr17	20088394	20226286	AC004702.1	+	lncRNA	102	same	10802_ID	chr17	20193570	20193671	102	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
68061	ENST00000519935.1_1	ENST00000465941.1_3	chr7	27208517	27211534	HOXA10-AS	+	lncRNA	chr7	27203282	27214799	HOXA9	-	processed_transcript	3297	opposite	7252_ID	chr7	27208518	27211534	3017	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
69711	ENST00000526017.1_3	ENST00000528607.1_3	chr11	70170976	70173315	AP002336.3	-	lncRNA	chr11	70128472	70209474	AP002336.2	-	lncRNA	2339	same	6181_ID	chr11	70170977	70173315	2339	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
69901	ENST00000526730.1_1	ENST00000528251.1_4	chr11	77733978	77734767	AP003032.1	+	lncRNA	chr11	77728016	77790890	NDUFC2-KCTD14	-	protein_coding	789	opposite	6228_ID	chr11	77733979	77734767	789	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
70051	ENST00000527012.1_1	ENST00000525594.1_3	chr11	77561649	77562557	AP002812.3	+	lncRNA	chr11	77540699	77583308	AP002812.2	-	lncRNA	908	opposite	6208_ID	chr11	77561650	77562557	908	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
70831	ENST00000529883.1_1	ENST00000531102.1_1	chr11	8714903	8718154	AC091053.1	+	lncRNA	chr11	8710676	8736306	RPL27A	+	processed_transcript	3251	same	2971_ID	chr11	8714904	8718154	3251	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
71221	ENST00000530972.1_3	ENST00000525594.1_3	chr11	77577457	77581137	AP002812.5	-	lncRNA	chr11	77540699	77583308	AP002812.2	-	lncRNA	3680	same	6210_ID	chr11	77577458	77581137	3680	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
71371	ENST00000531426.1_1	ENST00000528607.1_3	chr11	70166033	70167521	AP002336.1	+	lncRNA	chr11	70128472	70209474	AP002336.2	-	lncRNA	1488	opposite	6178_ID	chr11	70166034	70167521	1488	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
72371	ENST00000535806.1_3	ENST00000658485.1_3	chr12	64502542	64514269	AC025576.2	-	lncRNA	chr12	64493194	64524319	AC025576.3	-	lncRNA	11727	same	2098_ID	chr12	64502543	64514269	11727	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
72561	ENST00000537181.1_1	ENST00000513082.2_3	chr12	1494998	1496153	AC004672.2	+	lncRNA	chr12	1489225	1500668	AC004672.1	-	lncRNA	1155	opposite	152_ID	chr12	1494999	1496153	1155	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
76531	ENST00000555624.1_1	ENST00000555642.1_3	chr14	21387519	21388458	AL355922.1	+	lncRNA	chr14	21384924	21396739	AL355922.3	-	lncRNA	939	opposite	5362_ID	chr14	21387520	21388458	939	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7680	ENST00000556526.1_2	ENST00000413502.1_4	chr14	21058351	21058982	RNASE12	-	protein_coding	chr14	21052205	21078043	RNASE11	-	protein_coding	631	same	10530_ID	chr14	21058352	21058982	631	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
78581	ENST00000560712.1_3	ENST00000558980.1_3	chr15	86164494	86170920	AC087286.1	-	lncRNA	chr15	86162853	86214179	AC087286.2	-	lncRNA	6426	same	2797_ID	chr15	86164495	86170920	6426	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
79441	ENST00000562716.1_1	ENST00000465531.1_4	chr15	78285746	78287631	AC104758.1	+	lncRNA	chr15	78276377	78294026	TBC1D2B	-	protein_coding	1885	opposite	3567_ID	chr15	78285747	78287631	1885	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
82211	ENST00000568179.1_1	ENST00000562790.1_3	chr16	68967722	68971628	AC009137.2	+	lncRNA	chr16	68961449	68982164	AC009137.1	-	lncRNA	3906	opposite	904_ID	chr16	68967723	68971628	3906	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
82281	ENST00000568314.1_1	ENST00000560034.1_1	chr15	45490714	45491337	AC051619.6	-	lncRNA	chr15	45462541	45492156	AC051619.3	+	lncRNA	623	opposite	2319_ID	chr15	45490715	45491337	623	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
84501	ENST00000577218.1_3	ENST00000584958.2_1	chr17	27696734	27717795	AC068025.1	-	lncRNA	chr17	27679086	27731123	AC068025.2	+	lncRNA	21061	opposite	2388_ID	chr17	27696735	27717795	21061	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
84601	ENST00000577282.1	ENST00000446952.1_1	chr1	160515437	160515535	AL138930.2	-	miRNA	chr1	160506862	160541248	AL138930.1	+	lncRNA	98	opposite	4986_ID	chr1	160515438	160515535	98	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
85671	ENST00000577791.1	ENST00000624141.1_2	chr9	130452965	130453074	MIR3911	-	miRNA	chr9	130452376	130453119	AL162426.1	-	lncRNA	109	same	8418_ID	chr9	130452966	130453074	109	*	-	Exon	TRUE	FALSE	TRUE	FALSE	TRUE	TRUE	FALSE	FALSE	FALSE	1	1
85911	ENST00000577915.1	ENST00000427154.1_3	chr1	23370797	23370865	MIR3115	+	miRNA	chr1	23346639	23414551	AL031428.1	-	lncRNA	68	opposite	8233_ID	chr1	23370798	23370865	68	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
86511	ENST00000578311.1	ENST00000544939.1_3	chr12	121160995	121161069	MIR4700	+	miRNA	chr12	121159309	121161442	AC069234.3	-	lncRNA	74	opposite	8688_ID	chr12	121160996	121161069	74	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
86971	ENST00000578592.1	ENST00000598146.1_1	chr19	38690873	38691170	RN7SL663P	+	misc_RNA	chr19	38690475	38691574	AC011479.2	+	lncRNA	297	same	10349_ID	chr19	38690874	38691170	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
87971	ENST00000579177.1	ENST00000416664.1_1	chr13	93142415	93142473	MIR548AS	+	miRNA	chr13	93136858	93162347	GPC5-IT1	+	lncRNA	58	same	8884_ID	chr13	93142416	93142473	58	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
88391	ENST00000579467.1_3	ENST00000578850.1_1	chr18	9112401	9115875	AP005899.1	-	lncRNA	chr18	9102733	9254344	AP005263.1	+	lncRNA	3474	opposite	6306_ID	chr18	9112402	9115875	3474	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
88751	ENST00000579659.1	ENST00000374694.2_3	chr10	35930099	35930180	MIR4683	-	miRNA	chr10	35927176	35931206	FZD8	-	protein_coding	81	same	8669_ID	chr10	35930100	35930180	81	*	-	Exon	TRUE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
90121	ENST00000580425.1	ENST00000584958.2_1	chr17	27717679	27717748	MIR4523	+	miRNA	chr17	27679086	27731123	AC068025.2	+	lncRNA	69	same	8604_ID	chr17	27717680	27717748	69	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
93721	ENST00000582375.1_3	ENST00000578850.1_1	chr18	9121262	9136643	NDUFV2-AS1	-	lncRNA	chr18	9102733	9254344	AP005263.1	+	lncRNA	15381	opposite	9248_ID	chr18	9121263	9136643	15381	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
94051	ENST00000582614.1	ENST00000649589.1_3	chr6	167411294	167411400	MIR3939	-	miRNA	chr6	167409222	167412999	Z94721.3	-	lncRNA	106	same	8435_ID	chr6	167411295	167411400	106	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
94201	ENST00000582685.1_1	ENST00000659958.1_3	chr17	32303549	32307870	AC024610.1	+	lncRNA	chr17	32154717	32311335	AC024610.2	-	lncRNA	106534	opposite	2024_ID	chr17	32303550	32307870	4321	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
95081	ENST00000583156.1_3	ENST00000578408.1_3	chr17	30839886	30846368	AC079336.1	-	lncRNA	chr17	30836971	30850442	AC079336.2	-	lncRNA	6482	same	2646_ID	chr17	30839887	30846368	6482	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
95171	ENST00000583199.1	ENST00000653746.1_1	chr16	85339831	85339931	MIR5093	-	miRNA	chr16	85260808	85342782	AC092275.1	+	lncRNA	100	opposite	8835_ID	chr16	85339832	85339931	100	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
95511	ENST00000583423.1	ENST00000438105.2_1	chr8	104166841	104166917	MIR3151	+	miRNA	chr8	104152940	104242533	BAALC	+	protein_coding	76	same	8271_ID	chr8	104166842	104166917	76	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
96301	ENST00000583845.1	ENST00000427154.1_3	chr1	23384350	23384427	MIR4419A	-	miRNA	chr1	23346639	23414551	AL031428.1	-	lncRNA	77	same	8525_ID	chr1	23384351	23384427	77	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
96761	ENST00000584082.1	ENST00000568441.1_1	chr15	83736086	83736167	MIR4515	+	miRNA	chr15	83691322	83759534	AC024270.1	+	lncRNA	81	same	8592_ID	chr15	83736087	83736167	81	*	+	Intron	TRUE	FALSE	TRUE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
97151	ENST00000584303.1	ENST00000587831.1_3	chr19	11122383	11122680	RN7SL192P	+	misc_RNA	chr19	11121592	11126687	AC011442.1	-	lncRNA	297	opposite	10007_ID	chr19	11122384	11122680	297	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
98371	ENST00000585009.1	ENST00000646641.1_5	chr19	10341088	10341161	MIR4322	+	miRNA	chr19	10332108	10342007	S1PR2	-	protein_coding	73	opposite	8516_ID	chr19	10341089	10341161	73	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
98631	ENST00000585150.1_1	ENST00000585033.1_3	chr18	650228	652843	AP001178.3	+	lncRNA	chr18	641319	658269	TYMSOS	-	lncRNA	2615	opposite	6107_ID	chr18	650229	652843	2615	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
99591	ENST00000586878.1_1	ENST00000582938.1_3	chr17	28444096	28444190	hsa-mir-423	-	lncRNA	chr17	28417383	28444515	AC104984.2	-	lncRNA	94	same	7297_ID	chr17	28444097	28444190	94	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
99981	ENST00000587961.1_1	ENST00000589999.1_3	chr19	29097594	29106136	AC079466.1	+	lncRNA	chr19	28982770	29123635	AC005394.1	-	lncRNA	8542	opposite	2666_ID	chr19	29097595	29106136	8542	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
101151	ENST00000592252.1_1	ENST00000589456.1_3	chr19	56181997	56183435	AC008735.1	+	lncRNA	chr19	56173266	56186081	AC008735.2	-	lncRNA	1438	opposite	786_ID	chr19	56181998	56183435	1438	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
101771	ENST00000594280.1	ENST00000438589.1_3	chr1	48226978	48227290	FLJ00388	-	protein_coding	chr1	48226803	48231219	AL691459.1	-	lncRNA	312	same	7037_ID	chr1	48226979	48227290	312	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
102681	ENST00000597028.1_1	ENST00000593957.1_3	chr19	17530113	17530583	AC010319.3	-	lncRNA	chr19	17525065	17533133	AC010319.4	-	lncRNA	470	same	1058_ID	chr19	17530114	17530583	470	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
103081	ENST00000598112.2_1	ENST00000601040.1_1	chr19	16744607	16746080	AC024075.2	-	lncRNA	chr19	16741562	16754753	AC024075.3	+	lncRNA	1473	opposite	1997_ID	chr19	16744608	16746080	1473	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
105381	ENST00000602955.1_3	ENST00000602847.1_3	chr22	31373501	31373844	AC004542.1	-	lncRNA	chr22	31372500	31374834	AC004542.2	-	lncRNA	343	same	138_ID	chr22	31373502	31373844	343	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
105721	ENST00000603678.1_1	ENST00000603981.1_3	chr17	34145402	34150717	AC015849.4	+	lncRNA	chr17	34143720	34157297	AC015849.3	-	lncRNA	5315	opposite	1487_ID	chr17	34145403	34150717	5315	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
106411	ENST00000605539.1_1	ENST00000320248.4_2	chr8	1922983	1923480	AC019257.2	+	lncRNA	chr8	1921842	1955102	KBTBD11	+	protein_coding	497	same	1699_ID	chr8	1922984	1923480	497	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
108031	ENST00000607309.1_3	ENST00000647785.1_1	chr13	88079454	88099490	AL360267.1	-	lncRNA	chr13	88075747	88110662	AL360267.2	+	lncRNA	20036	opposite	5529_ID	chr13	88079455	88099490	20036	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
108421	ENST00000607586.1	ENST00000608931.1_3	chr6	25990988	25991454	U91328.20	+	lincRNA	chr6	25984039	25999395	U91328.2	-	lncRNA	466	opposite	12837_ID	chr6	25990989	25991454	466	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
108671	ENST00000607856.1_1	ENST00000509999.1_3	chr5	95185012	95185559	AC008592.4	+	lncRNA	chr5	95171646	95188425	AC008592.3	-	lncRNA	547	opposite	754_ID	chr5	95185013	95185559	547	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
109781	ENST00000609125.1_1	ENST00000556640.1_3	chr14	64907086	64908956	AL122035.2	-	lncRNA	chr14	64889652	64915275	AL122035.1	-	lncRNA	1870	same	4803_ID	chr14	64907087	64908956	1870	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
109871	ENST00000609190.1_1	ENST00000661961.1_1	chr3	156241528	156242036	AC084036.1	-	lncRNA	chr3	155861358	156258416	AC091607.2	+	lncRNA	508	opposite	2734_ID	chr3	156241529	156242036	508	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
110081	ENST00000609428.1_1	ENST00000420118.1_1	chr22	39132614	39132797	AL021707.8	-	lncRNA	chr22	39130729	39134770	AL021707.5	+	lncRNA	183	opposite	4457_ID	chr22	39132615	39132797	183	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
110151	ENST00000609473.1_1	ENST00000452042.1_3	chr3	49022917	49023396	AC137630.4	-	lncRNA	chr3	49022481	49027421	AC137630.1	-	lncRNA	479	same	4168_ID	chr3	49022918	49023396	479	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
111881	ENST00000612566.1_1	ENST00000561318.1_3	chr15	52309363	52310229	AC090970.2	-	lncRNA	chr15	52303195	52311292	MAPK6-DT	-	lncRNA	866	same	2959_ID	chr15	52309364	52310229	866	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
114381	ENST00000618749.1_1	ENST00000658513.1_3	chr21	47290767	47293259	AJ011931.1	+	lncRNA	chr21	47281743	47308552	AJ011931.2	-	lncRNA	2492	opposite	4423_ID	chr21	47290768	47293259	2492	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
114671	ENST00000619452.1_1	ENST00000546651.3_5	chr12	110470049	110470608	AC007546.1	+	lncRNA	chr12	110464832	110486360	C12orf76	-	processed_transcript	559	opposite	593_ID	chr12	110470050	110470608	559	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
116641	ENST00000623581.1_1	ENST00000624192.1_3	chr5	140547811	140548474	AC244517.12	+	lncRNA	chr5	140516264	140621312	AC244517.11	-	lncRNA	663	opposite	4293_ID	chr5	140547812	140548474	663	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
118231	ENST00000633198.1_1	ENST00000633906.1_1	chr8	1326032	1328473	AF067845.4	+	lncRNA	chr8	1321850	1329560	AF067845.5	+	lncRNA	2441	same	4374_ID	chr8	1326033	1328473	2441	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
118501	ENST00000635449.1_1	ENST00000642100.1_3	chr8	128092118	128104845	PRNCR1	+	lncRNA	chr8	128091139	128197488	CASC19	-	lncRNA	12727	opposite	9646_ID	chr8	128092119	128104845	12727	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
118821	ENST00000637275.1_1	ENST00000392039.2_3	chr2	231789281	231794634	AC012507.3	+	lncRNA	chr2	231774580	231825781	GPR55	-	protein_coding	5353	opposite	1397_ID	chr2	231789282	231794634	5353	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
119661	ENST00000641841.1_5	ENST00000478806.1_4	chr7	143954755	143961885	OR2A7	-	protein_coding	chr7	143948500	144052800	AC074386.1	-	lncRNA	7130	same	9377_ID	chr7	143954756	143961885	7130	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
121931	ENST00000650598.1_3	ENST00000585897.1_1	chr18	43071545	43083789	AC021517.3	-	lncRNA	chr18	43063309	43109820	AC021517.1	+	lncRNA	12244	opposite	1792_ID	chr18	43071546	43083789	12244	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
124421	ENST00000656016.1_1	ENST00000664810.1_3	chr8	22403072	22406350	AC037459.4	+	lncRNA	chr8	22339122	22410957	AC087854.1	-	lncRNA	3278	opposite	2283_ID	chr8	22403073	22406350	3278	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
126201	ENST00000659375.1_3	ENST00000524258.2_4	chr8	1709229	1712674	AC100810.1	-	lncRNA	chr8	1703943	1719627	CLN8	+	protein_coding	3455	opposite	3422_ID	chr8	1709230	1712674	3445	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
128211	ENST00000663880.1_1	ENST00000641035.1_3	chr1	56880610	56882809	LINC01767	+	lncRNA	chr1	56714445	56943359	AC119674.1	-	lncRNA	2203	opposite	7675_ID	chr1	56880611	56882809	2199	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
128841	ENST00000665043.1_1	ENST00000425779.1_1	chr2	62106074	62108488	AC107081.3	+	lncRNA	chr2	62095566	62113217	AC107081.1	+	lncRNA	2414	same	3684_ID	chr2	62106075	62108488	2414	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
128851	ENST00000665073.1_3	ENST00000619713.1_1	chr6	158717702	158724404	AL360169.3	-	lncRNA	chr6	158703872	158849411	AL360169.2	+	lncRNA	6702	opposite	5520_ID	chr6	158717703	158724404	6702	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
131501	ENST00000671014.1_1	ENST00000413502.1_4	chr14	21055817	21075380	AL163195.2	+	lncRNA	chr14	21052205	21078043	RNASE11	-	protein_coding	19578	opposite	5228_ID	chr14	21055818	21075380	19563	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
13237	ENST00000679337.1_1	ENST00000678483.1_1	chr3	119696999	119708994	AC078856.1	-	lncRNA	chr3	119687890	119787051	AC092910.4	-	lncRNA	11995	same	2597_ID	chr3	119697000	119708994	11995	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
72100	ENST00000239151.5_3	ENST00000552000.2_3	chr17	46668618	46671323	HOXB5	-	protein_coding	chr17	46651343	46682274	HOXB3	-	processed_transcript	2705	same	7265_ID	chr17	46668619	46671323	2705	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
77100	ENST00000240328.4_2	ENST00000592009.1_3	chr17	59477203	59486827	TBX2	+	protein_coding	chr17	59470818	59488916	TBX2-AS1	-	lncRNA	9624	opposite	12639_ID	chr17	59477204	59486827	9624	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
16510	ENST00000262940.7	ENST00000639209.1_3	chr7	102220092	102257204	RASA4	-	protein_coding	chr7	102219550	102319742	AC105052.4	-	lncRNA	37112	same	9705_ID	chr7	102220093	102257204	37112	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
53210	ENST00000328795.5_2	ENST00000623441.1_2	chr15	22382472	22383423	OR4N4	+	protein_coding	chr15	22382381	22383507	AC135068.4	+	protein_coding	951	same	9394_ID	chr15	22382473	22383423	951	*	+	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	FALSE	FALSE	FALSE	1	1
112210	ENST00000364072.1	ENST00000429443.1_3	chr1	201702533	201702633	RNU6-501P	+	snRNA	chr1	201692421	201706634	AL645504.1	-	lncRNA	100	opposite	11285_ID	chr1	201702534	201702633	100	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
30781	ENST00000410431.1	ENST00000577218.1_3	chr17	27715577	27715701	RNU4-34P	+	snRNA	chr17	27696734	27717795	AC068025.1	-	lncRNA	124	opposite	10678_ID	chr17	27715578	27715701	124	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
44721	ENST00000444482.1_1	ENST00000651392.1_3	chrX	73168807	73169393	AL353804.1	+	lncRNA	chrX	73160269	73227268	FTX	-	lncRNA	586	opposite	5269_ID	chrX	73168808	73169393	586	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
6706	ENST00000517278.1	ENST00000656103.1_3	chr3	134499368	134499469	RNU6-1174P	-	snRNA	chr3	134493384	134515335	AC016931.1	-	lncRNA	101	same	10879_ID	chr3	134499369	134499469	101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
78441	ENST00000560450.1_3	ENST00000570202.1_1	chr15	83690987	83693088	AC022558.1	-	lncRNA	chr15	83681412	83730597	AC024270.3	+	lncRNA	2101	opposite	1888_ID	chr15	83690988	83693088	2101	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
87382	ENST00000578855.1	ENST00000651604.1_3	chr16	28969903	28969982	MIR4517	+	miRNA	chr16	28964136	28977757	AC109460.2	-	lncRNA	79	opposite	8595_ID	chr16	28969904	28969982	79	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
101341	ENST00000592931.1_1	ENST00000589999.1_3	chr19	29000144	29009635	AC005616.1	+	lncRNA	chr19	28982770	29123635	AC005394.1	-	lncRNA	9491	opposite	322_ID	chr19	29000145	29009635	9491	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
105531	ENST00000603360.1_3	ENST00000651392.1_3	chrX	73177893	73189320	AL353804.2	-	lncRNA	chrX	73160269	73227268	FTX	-	lncRNA	11427	same	5272_ID	chrX	73177894	73189320	11427	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
117291	ENST00000625144.1_3	ENST00000624549.1_3	chr5	140571171	140573661	AC244517.7	-	lncRNA	chr5	140562975	140580969	AC244517.4	-	lncRNA	2490	same	4298_ID	chr5	140571172	140573661	2490	*	-	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
38452	ENST00000426124.1_1	ENST00000630717.1_2	chr2	112365417	112370095	AC017002.1	+	lncRNA	chr2	112226386	112395544	AC017002.2	+	lncRNA	4678	same	1584_ID	chr2	112365418	112370095	4678	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
99891	ENST00000587961.1_1	ENST00000585394.1_3	chr19	29097594	29106136	AC079466.1	+	lncRNA	chr19	29093285	29139210	AC079466.2	-	lncRNA	8542	opposite	2664_ID	chr19	29097595	29106136	8542	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
105161	ENST00000602874.1_1	ENST00000554009.1_3	chr14	74371969	74372339	AC005520.3	+	lncRNA	chr14	74362866	74389342	AC005480.1	-	lncRNA	370	opposite	303_ID	chr14	74371970	74372339	370	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
117571	ENST00000627971.1_2	ENST00000630717.1_2	chr2	112249132	112328551	SOCAR	+	lncRNA	chr2	112226386	112395544	AC017002.2	+	lncRNA	79703	same	12483_ID	chr2	112249133	112328551	79419	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
32971	ENST00000411956.1_1	ENST00000623188.1_3	chr21	45595371	45596336	AP001056.1	+	lncRNA	chr21	45593986	45608568	FP565260.5	-	lncRNA	965	opposite	6085_ID	chr21	45595372	45596336	965	*	+	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
1	ENST00000001008.6_2	ENST00000540093.2_5	chr12	2904135	2914589	FKBP4	+	protein_coding	chr12	2851791	2922068	ITFG2-AS1	-	lncRNA	10454	opposite	7032_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
7	ENST00000040584.6_2	ENST00000504315.1_2	chr12	54402768	54406553	HOXC8	+	protein_coding	chr12	54384407	54422706	HOXC6	+	protein_coding	3785	same	7278_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
26	ENST00000220514.8_4	ENST00000668616.1_1	chr15	41601470	41624789	OIP5	-	protein_coding	chr15	41576204	41672988	AC087721.2	+	processed_transcript	23319	opposite	9331_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	14
55	ENST00000231706.6_4	ENST00000486975.1_2	chr3	170177335	170303864	SLC7A14	-	protein_coding	chr3	170136655	170578169	AC026316.4	+	protein_coding	126529	opposite	12105_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
74	ENST00000239367.7_4	ENST00000647612.1_3	chr6	150139892	150185495	LRP11	-	protein_coding	chr6	150139072	150217147	AL355312.5	-	nonsense_mediated_decay	45603	same	7854_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	15
93	ENST00000245414.9_5	ENST00000638452.2_2	chr5	131817300	131826465	IRF1	-	protein_coding	chr5	131746523	131981771	AC116366.2	+	protein_coding	9169	opposite	7367_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	26
94	ENST00000245479.3_3	ENST00000414600.1_4	chr17	70117160	70122557	SOX9	+	protein_coding	chr17	70086599	70137921	SOX9-AS1	-	lncRNA	5397	opposite	12497_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
113	ENST00000251535.11_2	ENST00000653385.1_3	chr17	6899367	6914073	ALOX12	+	protein_coding	chr17	6778550	6915653	ALOX12-AS1	-	lncRNA	14706	opposite	5935_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
213	ENST00000276925.7_5	ENST00000650946.1_1	chr9	22002901	22009304	CDKN2B	-	protein_coding	chr9	21995131	22128102	CDKN2B-AS1	+	lncRNA	6403	opposite	6606_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
270	ENST00000292476.10_2	ENST00000413834.5_6	chr7	99036565	99054996	CPSF4	+	protein_coding	chr7	99017371	99063787	ATP5MF-PTCD1	-	protein_coding	18452	opposite	6703_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	8
271	ENST00000292476.10_2	ENST00000430982.1_4	chr7	99036565	99054996	CPSF4	+	protein_coding	chr7	99031002	99063786	PTCD1	-	protein_coding	18452	opposite	6702_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
296	ENST00000296600.5_2	ENST00000504829.1_4	chr5	121465240	121489264	ZNF474	+	protein_coding	chr5	121464456	121490551	AC010255.1	-	lncRNA	24024	opposite	13048_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
316	ENST00000300557.3_4	ENST00000641877.1_1	chr17	46029332	46035249	PRR15L	-	protein_coding	chr17	46025419	46059102	AC018521.1	+	lncRNA	5917	opposite	9649_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	14
357	ENST00000305783.13_4	ENST00000591035.1_1	chr17	58029600	58042101	RNFT1	-	protein_coding	chr17	58018268	58050462	AC005702.1	+	protein_coding	12522	opposite	10547_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
402	ENST00000311946.7_5	ENST00000517951.5_3	chr5	156887026	156901725	NIPAL4	+	protein_coding	chr5	156822541	157002783	ADAM19	-	nonsense_mediated_decay	14699	opposite	9265_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	21	22
408	ENST00000312349.5_5	ENST00000620254.5_4	chr5	156768605	156772685	FNDC9	-	protein_coding	chr5	156693132	156822602	CYFIP2	+	protein_coding	4080	opposite	7051_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	24	31
410	ENST00000312492.2_1	ENST00000303406.4_3	chr12	54426636	54429142	HOXC5	+	protein_coding	chr12	54410714	54449111	HOXC4	+	protein_coding	2506	same	7275_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
411	ENST00000312492.2_1	ENST00000512206.1_1	chr12	54426636	54429142	HOXC5	+	protein_coding	chr12	54410893	54429145	AC012531.2	+	lncRNA	2506	same	7276_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	2
418	ENST00000313565.10_6	ENST00000568581.5_4	chr16	71893582	71918093	ZNF821	-	protein_coding	chr16	71879898	71950997	IST1	+	protein_coding	35657	opposite	13076_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
453	ENST00000319327.6_4	ENST00000409617.6_2	chr15	44086359	44092419	SERINC4	-	protein_coding	chr15	44084551	44096625	SERF2	+	nonsense_mediated_decay	6060	opposite	12037_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
474	ENST00000321765.10_6	ENST00000481916.6_3	chr17	26904591	26926043	SPAG5	-	protein_coding	chr17	26782769	26941201	AC005726.1	-	nonsense_mediated_decay	21461	same	12502_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	7
550	ENST00000330125.10_5	ENST00000548143.1_3	chr22	31835352	31885828	EIF4ENIF1	-	protein_coding	chr22	31822726	31924726	DRG1	+	nonsense_mediated_decay	59132	opposite	6890_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
760	ENST00000362135.1	ENST00000638012.2_2	chr14	101377475	101377550	MIR370	+	miRNA	chr14	101364258	101453275	MEG8	+	lncRNA	75	same	8393_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	36
826	ENST00000362378.1	ENST00000330125.10_5	chr22	31875368	31875475	RNU6-28P	-	snRNA	chr22	31835352	31885828	EIF4ENIF1	-	protein_coding	107	same	11131_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	18
879	ENST00000362757.1	ENST00000647388.1_3	chr7	130739644	130739751	RNU6-1010P	-	snRNA	chr7	130623721	130792682	LINC-PINT	-	lncRNA	107	same	10764_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
978	ENST00000363345.2	ENST00000638012.2_2	chr14	101405892	101405968	SNORD113-6	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	76	same	12244_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	36
1008	ENST00000363497.1	ENST00000638012.2_2	chr14	101409787	101409861	SNORD113-8	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	74	same	12248_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	10	36
1059	ENST00000363762.1	ENST00000638012.2_2	chr14	101407462	101407539	SNORD113-7	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	77	same	12247_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	9	36
1061	ENST00000363767.1	ENST00000317931.12_5	chr18	6017721	6017838	RNU5F-3P	-	snRNA	chr18	5954715	6414910	L3MBTL4	-	protein_coding	117	same	10752_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	16	18
1162	ENST00000364314.1	ENST00000472726.3_2	chr14	104033741	104033882	RNU4-68P	+	snRNA	chr14	104029298	104152261	AL139300.1	+	protein_coding	141	same	10703_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	17
1164	ENST00000364314.1	ENST00000674165.1_2	chr14	104033741	104033882	RNU4-68P	+	snRNA	chr14	104029299	104058508	COA8	+	protein_coding	141	same	10704_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
1258	ENST00000364802.1	ENST00000637474.1_1	chr14	101402827	101402902	SNORD113-4	+	snoRNA	chr14	101302605	101413531	AL117190.1	+	lncRNA	75	same	12241_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	18
1268	ENST00000364830.2	ENST00000638012.2_2	chr14	101396255	101396328	SNORD113-3	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	73	same	12239_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	36
1273	ENST00000364877.1	ENST00000482067.3_3	chr7	7946149	7946255	RNU6-534P	+	snRNA	chr7	7680424	8007651	UMAD1	+	protein_coding	106	same	11316_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
1310	ENST00000365080.1	ENST00000638012.2_2	chr14	101411985	101412057	SNORD113-9	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12251_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	36
1347	ENST00000365321.1	ENST00000638012.2_2	chr14	101391160	101391229	SNORD113-1	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	69	same	12235_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	36
1541	ENST00000375832.5_2	ENST00000461287.1_3	chr6	31674642	31678456	LY6G6F	+	protein_coding	chr6	31654738	31681849	AL662899.1	-	nonsense_mediated_decay	3814	opposite	7889_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	21
1572	ENST00000378611.8_3	ENST00000640345.1_3	chr16	81087101	81110818	C16orf46	-	protein_coding	chr16	81055920	81129889	AC092718.8	-	protein_coding	23771	same	6479_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
1877	ENST00000384513.1	ENST00000645807.1_1	chr17	10761215	10761321	RNU6-1065P	-	snRNA	chr17	10747990	10784212	AC015908.2	+	lncRNA	106	opposite	10810_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
2007	ENST00000384839.1	ENST00000303406.4_3	chr12	54427733	54427829	MIR615	+	miRNA	chr12	54410714	54449111	HOXC4	+	protein_coding	96	same	9015_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
2008	ENST00000384839.1	ENST00000312492.2_1	chr12	54427733	54427829	MIR615	+	miRNA	chr12	54426636	54429142	HOXC5	+	protein_coding	96	same	9016_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2009	ENST00000384839.1	ENST00000512206.1_1	chr12	54427733	54427829	MIR615	+	miRNA	chr12	54410893	54429145	AC012531.2	+	lncRNA	96	same	9018_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2178	ENST00000385189.1	ENST00000504315.1_2	chr12	54385521	54385631	MIR196A2	+	miRNA	chr12	54384407	54422706	HOXC6	+	protein_coding	110	same	8153_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2211	ENST00000385229.1	ENST00000310958.10_6	chr15	55665137	55665232	MIR628	-	miRNA	chr15	55647447	55700708	CCPG1	-	protein_coding	95	same	9032_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
2302	ENST00000390219.1	ENST00000554041.1_3	chr14	101318726	101318824	MIR770	+	miRNA	chr14	101300768	101327363	AL117190.2	-	lncRNA	98	opposite	9089_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2314	ENST00000390236.1	ENST00000570025.1_2	chr16	30905223	30905306	MIR762	+	miRNA	chr16	30886542	30906400	MIR762HG	+	lncRNA	83	same	9082_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2315	ENST00000390236.1	ENST00000572471.1_3	chr16	30905223	30905306	MIR762	+	miRNA	chr16	30887086	30906537	AC135048.2	-	lncRNA	83	opposite	9081_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2411	ENST00000391082.1	ENST00000638012.2_2	chr14	101393678	101393750	SNORD113-2	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	72	same	12237_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	36
2846	ENST00000408593.1	ENST00000394507.5_5	chr7	91833328	91833412	MIR1285-1	-	miRNA	chr7	91828282	91875414	KRIT1	-	protein_coding	84	same	8047_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	19
2847	ENST00000408593.1	ENST00000414227.1_3	chr7	91833328	91833412	MIR1285-1	-	miRNA	chr7	91829327	91836171	AC000120.1	-	lncRNA	84	same	8046_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
2967	ENST00000408865.1	ENST00000417761.2_3	chr15	44085856	44085957	MIR1282	-	miRNA	chr15	44064814	44091331	AC018512.1	-	nonsense_mediated_decay	101	same	8042_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	16
2984	ENST00000409239.5_5	ENST00000503322.1_2	chr6	31679547	31681842	LY6G6E	-	protein_coding	chr6	31674680	31685695	LY6G6F-LY6G6D	+	protein_coding	2295	opposite	7887_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
3018	ENST00000410168.1	ENST00000399508.2	chr10	51255379	51255495	RNA5SP316	+	rRNA	chr10	51253925	51371300	RP11-592B15.3	-	processed_transcript	116	opposite	10517_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	8
3019	ENST00000410168.1	ENST00000415340.1	chr10	51255379	51255495	RNA5SP316	+	rRNA	chr10	51253786	51262426	RP11-592B15.9	-	lincRNA	116	opposite	10516_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
3024	ENST00000410180.1	ENST00000431992.5_4	chr1	33802166	33802465	RN7SKP16	-	misc_RNA	chr1	33789223	33841194	PHC2	-	protein_coding	299	same	9794_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	12
3067	ENST00000410406.1	ENST00000440314.7_4	chr12	3835387	3835493	RNU6-174P	-	snRNA	chr12	3724493	3862275	CRACR2A	-	protein_coding	106	same	11050_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	19
3098	ENST00000410479.1	ENST00000644993.1_1	chr3	170559883	170559961	RNY5P3	-	misc_RNA	chr3	170185040	170578782	SLC7A14-AS1	+	lncRNA	78	opposite	11868_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
3130	ENST00000410662.1	ENST00000641499.1_4	chr4	145956283	145956588	RN7SKP235	+	misc_RNA	chr4	145753059	146019366	ANAPC10	-	nonsense_mediated_decay	305	opposite	9843_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
3293	ENST00000411895.1_3	ENST00000422377.5_3	chr6	111681843	111682810	REV3L-IT1	-	lncRNA	chr6	111620233	111804918	REV3L	-	nonsense_mediated_decay	967	same	9732_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	18	33
3372	ENST00000413983.1_1	ENST00000621426.6_4	chr20	31148894	31161690	AL133343.2	+	lncRNA	chr20	31030864	31172692	NOL4L	-	protein_coding	12796	opposite	4846_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	10
3388	ENST00000414227.1_3	ENST00000650585.1_3	chr7	91829327	91836171	AC000120.1	-	lncRNA	chr7	91761087	91875238	AC000120.3	-	protein_coding	6844	same	24_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	17	17
3447	ENST00000415340.1	ENST00000602930.1	chr10	51253786	51262426	RP11-592B15.9	-	lincRNA	chr10	51224680	51371321	AGAP8	-	protein_coding	8640	same	11921_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	8
3537	ENST00000418161.2_2	ENST00000310232.11_4	chr3	42774066	42788260	CCDC13-AS1	+	lncRNA	chr3	42747247	42814745	CCDC13	-	protein_coding	14194	opposite	6566_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	7	16
3538	ENST00000418161.2_2	ENST00000648550.1_3	chr3	42774066	42788260	CCDC13-AS1	+	lncRNA	chr3	42747247	42845985	AC006059.2	-	protein_coding	14194	opposite	6567_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	17
3581	ENST00000419257.1_1	ENST00000674828.1_1	chr17	70068473	70089622	LINC02097	+	lncRNA	chr17	70029912	70217089	AC007461.1	-	lncRNA	30703	opposite	7725_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3783	ENST00000424474.2	ENST00000412204.2	chr1	143154492	143169717	RP11-782C8.4	+	lincRNA	chr1	143118704	143211070	RP11-782C8.2	-	lincRNA	15225	opposite	11937_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
3814	ENST00000425124.1	ENST00000438000.1	chr1	143188827	143189695	RP11-782C8.3	+	lincRNA	chr1	143119060	143233417	RP11-782C8.1	+	lincRNA	868	same	11934_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
3907	ENST00000428660.1_3	ENST00000469183.5_2	chr7	7997813	8009534	GLCCI1-DT	-	lncRNA	chr7	7680382	8043683	AC007161.3	+	lncRNA	11721	opposite	7131_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
4033	ENST00000432045.6_3	ENST00000653887.1_1	chr7	130561567	130598069	AC016831.1	-	lncRNA	chr7	130538490	130615439	LINC00513	+	lncRNA	36502	opposite	1564_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	5
4043	ENST00000432377.1_1	ENST00000648550.1_3	chr3	42812103	42815127	LINC02158	+	lncRNA	chr3	42747247	42845985	AC006059.2	-	protein_coding	3024	opposite	7740_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
4142	ENST00000435127.1_1	ENST00000439708.1_4	chr7	22602955	22613615	AC002480.1	+	lncRNA	chr7	22532295	22672544	STEAP1B	-	protein_coding	10660	opposite	58_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4149	ENST00000435281.2_4	ENST00000607862.5_1	chr13	78513150	78549674	AL139002.1	-	lncRNA	chr13	78493823	79158297	OBI1-AS1	+	lncRNA	36524	opposite	4995_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
4192	ENST00000436429.1_1	ENST00000318948.7_4	chr21	16343790	16365175	AF127577.2	+	lncRNA	chr21	16333555	16437321	NRIP1	-	protein_coding	21385	opposite	4386_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4434	ENST00000443093.2_3	ENST00000612967.2_4	chr5	131804581	131808735	AC116366.1	-	lncRNA	chr5	131746611	131824394	IRF1-AS1	+	lncRNA	4154	opposite	3907_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4532	ENST00000446301.1_1	ENST00000432230.6_3	chr21	16333629	16336554	AF127577.1	+	lncRNA	chr21	16191163	16386751	AF127577.4	-	lncRNA	2925	opposite	4383_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
4558	ENST00000446984.6_3	ENST00000396396.6_2	chr9	71012848	71021370	AL161457.2	-	lncRNA	chr9	70971526	71145977	PGM5	+	protein_coding	12620	opposite	5149_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	10
4604	ENST00000448387.6_2	ENST00000656039.1_3	chr15	32885656	32899511	GOLGA8N	+	protein_coding	chr15	32877724	32907293	AC123768.2	-	lncRNA	13855	opposite	7144_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
4693	ENST00000451066.1_3	ENST00000482067.3_3	chr7	7989483	7990340	AC006042.3	-	lncRNA	chr7	7680424	8007651	UMAD1	+	protein_coding	857	opposite	403_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
4827	ENST00000454380.1_3	ENST00000612967.2_4	chr5	131755107	131762406	LINC02863	-	lncRNA	chr5	131746611	131824394	IRF1-AS1	+	lncRNA	7299	opposite	7810_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
4838	ENST00000454756.6_3	ENST00000650700.1_1	chr4	53588784	53617753	ERVMER34-1	-	processed_transcript	chr4	53578560	53732988	LINC01618	+	lncRNA	28969	opposite	6932_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
4937	ENST00000457213.1_1	ENST00000375671.7_1	chr20	31169764	31181702	AL133343.1	+	lncRNA	chr20	31152793	31196692	NOL4L-DT	+	lncRNA	11938	same	4845_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5242	ENST00000466753.1_3	ENST00000437572.1_3	chr7	99046097	99063788	ATP5MF	-	processed_transcript	chr7	99032653	99063820	ATP5MF-PTCD1	-	processed_transcript	17712	same	6374_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	3
5326	ENST00000472053.2_1	ENST00000239367.7_4	chr6	150173597	150174328	AL355312.3	+	lncRNA	chr6	150139892	150185495	LRP11	-	protein_coding	731	opposite	5330_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	7
5333	ENST00000472338.2	ENST00000546361.7_6	chr19	16650498	16650795	RN7SL146P	-	misc_RNA	chr19	16628704	16653248	CHERP	-	protein_coding	297	same	9977_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
5344	ENST00000473110.1_3	ENST00000644993.1_1	chr3	170458139	170459154	AC026316.2	-	lncRNA	chr3	170185040	170578782	SLC7A14-AS1	+	lncRNA	1015	opposite	2123_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
5357	ENST00000473753.2_3	ENST00000536154.5_1	chr12	28316230	28343299	AC022364.1	-	lncRNA	chr12	28299019	28637043	CCDC91	+	protein_coding	27441	opposite	1849_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	5
5373	ENST00000474271.1_1	ENST00000557172.5_3	chr14	104038092	104073860	COA8	+	processed_transcript	chr14	104028232	104124071	KLC1	+	protein_coding	44564	same	6684_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5634	ENST00000493031.2	ENST00000435281.2_4	chr13	78521627	78521907	RN7SL810P	-	misc_RNA	chr13	78513150	78549674	AL139002.1	-	lncRNA	280	same	10451_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
5636	ENST00000493031.2	ENST00000646948.1_5	chr13	78521627	78521907	RN7SL810P	-	misc_RNA	chr13	78469615	78549664	EDNRB	-	protein_coding	280	same	10450_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
5699	ENST00000497988.1_1	ENST00000644993.1_1	chr3	170374350	170379912	AC026316.3	+	lncRNA	chr3	170185040	170578782	SLC7A14-AS1	+	lncRNA	5562	same	2125_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
5705	ENST00000498628.6_5	ENST00000404796.3_2	chr9	21968103	21995300	CDKN2A	-	protein_coding	chr9	21802634	22029593	AL359922.1	+	nonsense_mediated_decay	27550	opposite	6603_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
5716	ENST00000498989.2_3	ENST00000348520.10_2	chr14	104148698	104150352	AL049840.2	-	lncRNA	chr14	104095513	104180586	KLC1	+	protein_coding	1654	opposite	4645_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	14
5736	ENST00000500941.2_1	ENST00000576873.2_4	chr15	32905933	32907312	AC123768.1	+	lncRNA	chr15	32898613	32907359	AC123768.2	-	lncRNA	1379	opposite	3993_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
5738	ENST00000501068.2_1	ENST00000638948.1_4	chr16	81110923	81112466	AC092718.1	+	lncRNA	chr16	81087191	81129838	AC092718.3	-	protein_coding	1543	opposite	3124_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
5803	ENST00000504004.1_1	ENST00000261486.6_4	chr5	111563979	111593006	AC104126.1	+	lncRNA	chr5	111498315	111754974	EPB41L4A	-	protein_coding	29027	opposite	3511_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	23
5812	ENST00000504315.1_2	ENST00000513209.1_3	chr12	54384407	54422706	HOXC6	+	protein_coding	chr12	54379628	54428672	AC012531.3	+	protein_coding	40200	same	7277_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5821	ENST00000504557.1_1	ENST00000504315.1_2	chr12	54388678	54396672	HOXC9	+	processed_transcript	chr12	54384407	54422706	HOXC6	+	protein_coding	8443	same	7280_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5843	ENST00000505209.1_3	ENST00000514925.1_6	chr5	121490190	121491710	ZNF474-AS1	-	lncRNA	chr5	121465316	121515312	AC010255.2	+	protein_coding	1520	opposite	13049_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	4
5857	ENST00000505700.1_3	ENST00000504315.1_2	chr12	54392805	54393794	HOXC-AS1	-	lncRNA	chr12	54384407	54422706	HOXC6	+	protein_coding	989	opposite	7271_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5858	ENST00000505700.1_3	ENST00000504557.1_1	chr12	54392805	54393794	HOXC-AS1	-	lncRNA	chr12	54388678	54396672	HOXC9	+	processed_transcript	989	opposite	7272_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
5901	ENST00000506875.1_1	ENST00000261486.6_4	chr5	111527882	111542760	AC010261.2	+	lncRNA	chr5	111498315	111754974	EPB41L4A	-	protein_coding	18120	opposite	1043_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	14	23
5920	ENST00000507450.5_2	ENST00000476151.5_3	chr7	102290771	102301606	SPDYE2B	+	protein_coding	chr7	102277495	102312088	AC105052.3	-	nonsense_mediated_decay	11074	opposite	12523_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
5953	ENST00000508443.1_3	ENST00000519499.2_5	chr5	156802748	156811947	AC008676.1	-	lncRNA	chr5	156768603	156887108	AC008676.3	-	protein_coding	9210	same	772_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
5985	ENST00000509655.2_3	ENST00000620254.5_4	chr5	156790389	156792509	AC016571.1	-	lncRNA	chr5	156693132	156822602	CYFIP2	+	protein_coding	2120	opposite	1536_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	27	31
6070	ENST00000512206.1_1	ENST00000303406.4_3	chr12	54410893	54429145	AC012531.2	+	lncRNA	chr12	54410714	54449111	HOXC4	+	protein_coding	18252	same	1405_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	4
6096	ENST00000512833.1_1	ENST00000649263.1_3	chr4	145772723	145795939	AC109811.1	+	lncRNA	chr4	145131853	146019326	AC098588.2	-	nonsense_mediated_decay	23216	opposite	3778_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	8
6147	ENST00000514411.1_1	ENST00000261486.6_4	chr5	111509266	111511245	AC010261.1	+	lncRNA	chr5	111498315	111754974	EPB41L4A	-	protein_coding	1979	opposite	1042_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	10	23
6383	ENST00000516428.1	ENST00000535520.5_1	chr12	28472267	28472396	RNU4-54P	-	snRNA	chr12	28332209	28702124	CCDC91	+	nonsense_mediated_decay	129	opposite	10694_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	14
6787	ENST00000519541.1_3	ENST00000639209.1_3	chr7	102222969	102283316	AC105052.1	-	nonsense_mediated_decay	chr7	102219550	102319742	AC105052.4	-	lncRNA	60347	same	3591_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7019	ENST00000527579.1_3	ENST00000508587.2_1	chr8	144791176	144795754	AC105219.2	-	lncRNA	chr8	144790220	144796068	ZNF707	+	processed_transcript	4578	opposite	3604_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	6
7028	ENST00000527879.2_3	ENST00000525566.6_5	chr12	104697516	104698983	EID3	+	protein_coding	chr12	104609556	104744085	TXNRD1	+	protein_coding	1467	same	6884_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	16
7158	ENST00000532335.5_3	ENST00000606915.1_1	chr6	150204510	150217195	RAET1E	-	protein_coding	chr6	150184629	150240643	RAET1E-AS1	+	lncRNA	14728	opposite	9696_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7242	ENST00000536498.5_5	ENST00000591482.1_1	chr17	26691289	26692265	SEBOX	-	protein_coding	chr17	26684669	26708716	AC002094.1	+	lncRNA	976	opposite	12026_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
7330	ENST00000542029.1_7	ENST00000379061.8_2	chr17	26696702	26700110	VTN	-	protein_coding	chr17	26691377	26725151	SARM1	+	processed_transcript	5806	opposite	12897_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
7334	ENST00000542437.1_4	ENST00000527561.5_2	chr8	144788863	144790279	CCDC166	-	protein_coding	chr8	144766653	144794907	ZNF707	+	nonsense_mediated_decay	1416	opposite	6568_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7346	ENST00000543347.1_1	ENST00000637214.1_6	chr12	13683588	13700516	AC007527.1	+	lncRNA	chr12	13590875	13761605	GRIN2B	-	protein_coding	20729	opposite	585_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7461	ENST00000548347.2_4	ENST00000591834.1_3	chr12	53907674	53911392	AC023509.2	+	lncRNA	chr12	53900474	54019763	ATF7-NPFF	-	protein_coding	3718	opposite	1955_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	12
7499	ENST00000549788.1_3	ENST00000553310.6_3	chr12	52668430	52672940	AC021066.1	-	lncRNA	chr12	52643083	52696943	KRT86	+	protein_coding	4510	opposite	1776_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
7500	ENST00000549807.1_3	ENST00000525566.6_5	chr12	104656091	104674500	AC089983.1	-	lncRNA	chr12	104609556	104744085	TXNRD1	+	protein_coding	18409	opposite	2858_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	16
7628	ENST00000555059.2_5	ENST00000591482.1_1	chr17	26691309	26695033	AC002094.3	-	protein_coding	chr17	26684669	26708716	AC002094.1	+	lncRNA	3724	opposite	38_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	6
7818	ENST00000559959.1_1	ENST00000668273.1_1	chr15	41635277	41636423	AC087721.1	+	lncRNA	chr15	41612991	41673219	NUSAP1	+	protein_coding	1146	same	2844_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
7833	ENST00000560280.1_1	ENST00000559824.5_1	chr15	60822171	60837358	AC107241.1	+	lncRNA	chr15	60771376	60922836	RORA-AS1	+	lncRNA	15187	same	3688_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
7839	ENST00000560450.1_3	ENST00000261721.9_4	chr15	83690987	83693088	AC022558.1	-	lncRNA	chr15	83685174	83736004	BTBD1	-	protein_coding	2101	same	1886_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	7
7864	ENST00000561083.1_3	ENST00000356113.10_1	chr15	58727088	58790934	LIPC-AS1	-	lncRNA	chr15	58702767	58861072	LIPC	+	protein_coding	63846	opposite	7821_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	10
7906	ENST00000561979.1_3	ENST00000313565.10_6	chr16	71915455	71916176	AC009127.1	-	lncRNA	chr16	71893582	71918093	ZNF821	-	protein_coding	721	same	895_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	6
7908	ENST00000561979.1_3	ENST00000569119.1_1	chr16	71915455	71916176	AC009127.1	-	lncRNA	chr16	71879950	71919171	ATXN1L	+	processed_transcript	721	opposite	893_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	3
7923	ENST00000562450.1_1	ENST00000378611.8_3	chr16	81088905	81090031	AC092718.5	+	lncRNA	chr16	81087101	81110818	C16orf46	-	protein_coding	1126	opposite	3129_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
7924	ENST00000562450.1_1	ENST00000638948.1_4	chr16	81088905	81090031	AC092718.5	+	lncRNA	chr16	81087191	81129838	AC092718.3	-	protein_coding	1126	opposite	3130_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
7948	ENST00000562848.1_1	ENST00000303406.4_3	chr12	54413693	54416373	AC012531.1	+	lncRNA	chr12	54410714	54449111	HOXC4	+	protein_coding	2680	same	1402_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
7949	ENST00000562848.1_1	ENST00000504315.1_2	chr12	54413693	54416373	AC012531.1	+	lncRNA	chr12	54384407	54422706	HOXC6	+	protein_coding	2680	same	1401_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
7950	ENST00000562848.1_1	ENST00000512206.1_1	chr12	54413693	54416373	AC012531.1	+	lncRNA	chr12	54410893	54429145	AC012531.2	+	lncRNA	2680	same	1404_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8226	ENST00000568362.5_1	ENST00000378611.8_3	chr16	81103458	81110203	AC092718.6	+	lncRNA	chr16	81087101	81110818	C16orf46	-	protein_coding	6745	opposite	3132_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8227	ENST00000568362.5_1	ENST00000638948.1_4	chr16	81103458	81110203	AC092718.6	+	lncRNA	chr16	81087191	81129838	AC092718.3	-	protein_coding	6745	opposite	3133_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
8277	ENST00000569691.2_2	ENST00000565113.5_3	chr15	55700692	55710996	C15orf65	+	protein_coding	chr15	55647445	55790558	DNAAF4-CCPG1	-	lncRNA	10304	opposite	6478_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	8	15
8338	ENST00000572471.1_3	ENST00000662645.1_1	chr16	30887086	30906537	AC135048.2	-	lncRNA	chr16	30886859	30906541	MIR762HG	+	lncRNA	19451	opposite	4132_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	1	2
8355	ENST00000573222.1_3	ENST00000572547.1_3	chr17	6897960	6898508	AC040977.1	-	lncRNA	chr17	6888812	6922733	AC040977.2	-	lncRNA	548	same	2298_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	3
8541	ENST00000577704.1_1	ENST00000659442.1_1	chr18	5956099	5960784	AP001021.2	+	lncRNA	chr18	5895743	6108381	AP001021.3	+	lncRNA	4685	same	6070_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	7
8542	ENST00000577704.1_1	ENST00000664630.1_1	chr18	5956099	5960784	AP001021.2	+	lncRNA	chr18	5895754	5989368	AP001021.1	+	lncRNA	4685	same	6068_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8559	ENST00000577790.2_7	ENST00000414744.2_2	chr17	26928844	26941203	RSKR	-	nonsense_mediated_decay	chr17	26925807	26944395	SPAG5-AS1	+	lncRNA	12371	opposite	11973_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
8652	ENST00000578365.1	ENST00000676450.1_1	chr4	53578848	53578914	MIR4449	+	miRNA	chr4	53578667	53589790	DANCR	+	lncRNA	66	same	8549_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
8747	ENST00000578935.1_1	ENST00000650946.1_1	chr9	21995480	21996012	AL449423.1	+	lncRNA	chr9	21995131	22128102	CDKN2B-AS1	+	lncRNA	532	same	5645_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
8760	ENST00000579019.2_1	ENST00000481916.6_3	chr17	26934980	26936748	AC005726.4	+	lncRNA	chr17	26782769	26941201	AC005726.1	-	nonsense_mediated_decay	1768	opposite	346_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	7
8761	ENST00000579019.2_1	ENST00000577790.2_7	chr17	26934980	26936748	AC005726.4	+	lncRNA	chr17	26928844	26941203	RSKR	-	nonsense_mediated_decay	1768	opposite	344_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
8884	ENST00000579767.1	ENST00000380317.8_4	chr16	30886586	30886644	MIR4519	-	miRNA	chr16	30844946	30905623	BCL7C	-	protein_coding	58	same	8599_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	5	5
8897	ENST00000579811.1	ENST00000454756.6_3	chr4	53617313	53617379	AC104066.1	-	miRNA	chr4	53588784	53617753	ERVMER34-1	-	processed_transcript	66	same	3503_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
8996	ENST00000580372.1_3	ENST00000582262.1_3	chr17	46024167	46025638	AC018521.2	-	lncRNA	chr17	46022789	46051804	AC018521.1	+	lncRNA	1474	opposite	1627_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	7
9259	ENST00000581851.1_4	ENST00000643787.1_3	chr17	10698229	10707416	TMEM238L	-	protein_coding	chr17	10698222	10741411	AC015908.6	-	lncRNA	9187	same	12724_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	3
9260	ENST00000581851.1_4	ENST00000647474.1_1	chr17	10698229	10707416	TMEM238L	-	protein_coding	chr17	10633093	10784212	AC015908.7	+	lncRNA	9187	opposite	12725_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
9355	ENST00000582334.1_1	ENST00000580899.1_1	chr17	10695375	10698302	AC015908.4	+	lncRNA	chr17	10633112	10718481	TMEM220-AS1	+	lncRNA	2927	same	1498_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9367	ENST00000582397.1	ENST00000412204.2	chr1	143163749	143163822	MIR3118-2	+	miRNA	chr1	143118704	143211070	RP11-782C8.2	-	lincRNA	73	opposite	8241_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	6	8
9368	ENST00000582397.1	ENST00000424474.2	chr1	143163749	143163822	MIR3118-2	+	miRNA	chr1	143154492	143169717	RP11-782C8.4	+	lincRNA	73	same	8239_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
9515	ENST00000583214.1	ENST00000627130.1_2	chr1	33797993	33798093	MIR3605	-	miRNA	chr1	33791228	33814846	AL513327.1	+	lncRNA	100	opposite	8339_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
9928	ENST00000586209.1_1	ENST00000587125.1_3	chr17	58042456	58074333	RNFT1-DT	+	lncRNA	chr17	58039723	58096336	TBC1D3P1-DHX40P1	-	lncRNA	32141	opposite	10548_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	8	14
10038	ENST00000590024.1_1	ENST00000460472.6_5	chr2	179588183	179591773	AC010680.1	+	lncRNA	chr2	179390715	179672150	TTN	-	protein_coding	3590	opposite	1123_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	46	190
10152	ENST00000593779.1_1	ENST00000263390.8_4	chr19	16697715	16698796	AC008764.7	-	lncRNA	chr19	16685729	16739015	MED26	-	protein_coding	1081	same	813_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
10154	ENST00000593779.1_1	ENST00000595505.5_6	chr19	16697715	16698796	AC008764.7	-	lncRNA	chr19	16688460	16770926	AC008764.4	-	nonsense_mediated_decay	1081	same	811_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
10249	ENST00000596816.1_3	ENST00000465250.6_3	chr19	16750777	16751479	AC024075.1	-	lncRNA	chr19	16741561	16770941	SMIM7	-	nonsense_mediated_decay	702	same	1994_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10268	ENST00000597226.1_1	ENST00000595505.5_6	chr19	16721221	16747342	AC008764.2	+	lncRNA	chr19	16688460	16770926	AC008764.4	-	nonsense_mediated_decay	26121	opposite	806_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
10289	ENST00000597851.1_1	ENST00000595753.6_4	chr19	16676361	16677141	AC008764.5	+	lncRNA	chr19	16660647	16683226	SLC35E1	-	protein_coding	780	opposite	810_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
10297	ENST00000598112.2_1	ENST00000465250.6_3	chr19	16744607	16746080	AC024075.2	-	lncRNA	chr19	16741561	16770941	SMIM7	-	nonsense_mediated_decay	1473	same	1996_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
10384	ENST00000600839.3_4	ENST00000496027.5_4	chr3	42744032	42748268	HHATL-AS1	+	lncRNA	chr3	42740199	42774414	AC006059.3	-	lncRNA	4236	opposite	7230_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
10391	ENST00000601040.1_1	ENST00000595505.5_6	chr19	16741562	16754753	AC024075.3	+	lncRNA	chr19	16688460	16770926	AC008764.4	-	nonsense_mediated_decay	13200	opposite	2000_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	5
10553	ENST00000603415.1_1	ENST00000659121.1_1	chr2	179413610	179415408	AC009948.1	+	lncRNA	chr2	179387947	179644679	TTN-AS1	+	lncRNA	1798	same	1005_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
10557	ENST00000603521.1_1	ENST00000659121.1_1	chr2	179443516	179445633	AC010680.2	+	lncRNA	chr2	179387947	179644679	TTN-AS1	+	lncRNA	2117	same	1124_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
10580	ENST00000604081.1_1	ENST00000504315.1_2	chr12	54387593	54389683	HOXC-AS2	-	retained_intron	chr12	54384407	54422706	HOXC6	+	protein_coding	2976	opposite	7273_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
10585	ENST00000604215.1_1	ENST00000659121.1_1	chr2	179441829	179442349	AC010680.3	+	lncRNA	chr2	179387947	179644679	TTN-AS1	+	lncRNA	520	same	1126_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
10605	ENST00000604692.1_1	ENST00000659121.1_1	chr2	179405851	179406526	AC009948.2	+	lncRNA	chr2	179387947	179644679	TTN-AS1	+	lncRNA	675	same	1007_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	12
10615	ENST00000605021.1_1	ENST00000460472.6_5	chr2	179509443	179509906	AC010680.5	+	lncRNA	chr2	179390715	179672150	TTN	-	protein_coding	463	opposite	1131_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	46	190
10628	ENST00000605334.1_1	ENST00000659121.1_1	chr2	179481307	179481850	AC010680.4	+	lncRNA	chr2	179387947	179644679	TTN-AS1	+	lncRNA	543	same	1128_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	12
10787	ENST00000607261.1	ENST00000638012.2_2	chr14	101404523	101404601	SNORD113-5	+	snoRNA	chr14	101364258	101453275	MEG8	+	lncRNA	78	same	12242_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	7	36
10814	ENST00000607434.1_1	ENST00000673446.1_1	chr6	111630405	111634720	AL080317.2	+	lncRNA	chr6	111588861	111766557	MFSD4B	+	processed_transcript	4315	same	4680_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
10920	ENST00000608412.1_1	ENST00000642963.1_2	chr7	130621222	130624420	AC058791.1	+	lncRNA	chr7	130476022	130792687	AC016831.6	-	lncRNA	3198	opposite	2342_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	6
11227	ENST00000613598.1_1	ENST00000379061.8_2	chr17	26700274	26700581	AC002094.4	+	lncRNA	chr17	26691377	26725151	SARM1	+	processed_transcript	307	same	40_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
11232	ENST00000613737.1_1	ENST00000558239.5_3	chr15	58746525	58747181	AC084781.1	+	lncRNA	chr15	58306055	58766112	ALDH1A2	-	protein_coding	656	opposite	2755_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11233	ENST00000613737.1_1	ENST00000561083.1_3	chr15	58746525	58747181	AC084781.1	+	lncRNA	chr15	58727088	58790934	LIPC-AS1	-	lncRNA	656	opposite	2754_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11304	ENST00000615568.1_1	ENST00000558239.5_3	chr15	58748386	58748547	AC084781.2	+	lncRNA	chr15	58306055	58766112	ALDH1A2	-	protein_coding	161	opposite	2756_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11305	ENST00000615568.1_1	ENST00000561083.1_3	chr15	58748386	58748547	AC084781.2	+	lncRNA	chr15	58727088	58790934	LIPC-AS1	-	lncRNA	161	opposite	2757_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
11353	ENST00000616598.1_1	ENST00000570202.1_1	chr15	83688866	83689554	AC022558.3	+	lncRNA	chr15	83681412	83730597	AC024270.3	+	lncRNA	688	same	1891_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11438	ENST00000618847.5_5	ENST00000578701.5_1	chr18	24486444	24765272	CHST9	-	protein_coding	chr18	24445270	24770662	AQP4-AS1	+	lncRNA	278828	opposite	6653_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
11483	ENST00000619739.1_1	ENST00000473753.2_3	chr12	28338557	28339123	AC022079.2	-	lncRNA	chr12	28316230	28343299	AC022364.1	-	lncRNA	566	same	1821_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
11484	ENST00000619739.1_1	ENST00000535520.5_1	chr12	28338557	28339123	AC022079.2	-	lncRNA	chr12	28332209	28702124	CCDC91	+	nonsense_mediated_decay	566	opposite	1822_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
11506	ENST00000620208.1_1	ENST00000335670.11_5	chr15	60885225	60885659	AC009560.1	+	lncRNA	chr15	60780482	61521501	RORA	-	protein_coding	434	opposite	976_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	10
11567	ENST00000621546.1_1	ENST00000535520.5_1	chr12	28389159	28389761	AC022079.1	+	lncRNA	chr12	28332209	28702124	CCDC91	+	nonsense_mediated_decay	602	same	1820_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	14
11581	ENST00000621825.1_1	ENST00000543347.1_1	chr12	13693164	13697474	AC007527.2	+	lncRNA	chr12	13683588	13700516	AC007527.1	+	lncRNA	4310	same	587_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11664	ENST00000623885.1_1	ENST00000357232.10_6	chr4	155182886	155183345	AC079298.2	+	lncRNA	chr4	155152893	155412951	DCHS2	-	protein_coding	459	opposite	2638_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	19
11669	ENST00000623966.1_1	ENST00000409035.1_3	chr19	16683434	16686151	AC008764.8	+	lncRNA	chr19	16589877	16739015	AC008764.1	-	nonsense_mediated_decay	2717	opposite	814_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	11
11720	ENST00000625026.1_1	ENST00000660197.1_1	chr4	155157131	155158750	AC079298.1	+	lncRNA	chr4	154869869	155221652	AC079298.3	+	lncRNA	18690	same	2636_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	4	4
11890	ENST00000637958.1_2	ENST00000514026.2_3	chr12	3861683	3867008	AC006207.1	+	lncRNA	chr12	3835077	3873985	CRACR2A	-	processed_transcript	5325	opposite	437_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	1
11992	ENST00000643787.1_3	ENST00000647474.1_1	chr17	10698222	10741411	AC015908.6	-	lncRNA	chr17	10633093	10784212	AC015908.7	+	lncRNA	43189	opposite	1500_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
12102	ENST00000648881.1_1	ENST00000548446.6_4	chr12	53925535	54015002	AC023509.6	+	lncRNA	chr12	53901639	54020154	ATF7	-	protein_coding	89467	opposite	1957_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	13
12239	ENST00000651729.1_3	ENST00000676450.1_1	chr4	53578879	53588544	AC104066.4	-	lncRNA	chr4	53578667	53589790	DANCR	+	lncRNA	9665	opposite	3504_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	2	4
12299	ENST00000652867.1_1	ENST00000609686.4_3	chr12	13734964	13773011	AC007535.1	+	lncRNA	chr12	13690270	14134536	GRIN2B	-	protein_coding	38047	opposite	591_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	6	14
12389	ENST00000655227.1_2	ENST00000625689.2_1	chr2	171676575	171677805	AC007405.4	-	lncRNA	chr2	171673071	171717645	GAD1	+	protein_coding	1230	opposite	570_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	17
12538	ENST00000658234.1_1	ENST00000650428.1_3	chr7	22629316	22642155	AC002480.2	+	lncRNA	chr7	22611282	22767232	STEAP1B	-	processed_transcript	12839	opposite	59_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	2	2
12579	ENST00000658869.1_3	ENST00000644993.1_1	chr3	170409785	170453850	AC026316.5	-	lncRNA	chr3	170185040	170578782	SLC7A14-AS1	+	lncRNA	44065	opposite	2128_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	4
12735	ENST00000662130.1_3	ENST00000580899.1_1	chr17	10644573	10672406	AC015908.3	-	lncRNA	chr17	10633112	10718481	TMEM220-AS1	+	lncRNA	27833	opposite	1497_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12783	ENST00000663207.1_3	ENST00000454603.5_4	chr2	171671195	171673701	AC007405.2	-	lncRNA	chr2	171669722	171686095	GAD1	+	protein_coding	3352	opposite	568_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12785	ENST00000663232.1_1	ENST00000507810.5_3	chr5	111496222	111500515	EPB41L4A-AS1	+	lncRNA	chr5	111478137	111564475	EPB41L4A	-	processed_transcript	4293	opposite	6912_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	11	13
12852	ENST00000664686.1_3	ENST00000423955.7_2	chr12	52692639	52700071	AC121757.2	-	lncRNA	chr12	52668428	52702947	KRT86	+	protein_coding	7432	opposite	3978_ID	NA	NA	NA	NA	NA	NA	Exon	TRUE	FALSE	TRUE	FALSE	FALSE	TRUE	TRUE	FALSE	FALSE	3	11
12895	ENST00000665497.1_1	ENST00000397520.1_4	chr22	31886135	31887008	AL096701.4	+	lncRNA	chr22	31864267	31892094	EIF4ENIF1	-	protein_coding	873	opposite	4686_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	3
12896	ENST00000665497.1_1	ENST00000465646.5_1	chr22	31886135	31887008	AL096701.4	+	lncRNA	chr22	31884673	31925053	SFI1	+	processed_transcript	873	same	4687_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	2
13110	ENST00000670289.1_3	ENST00000636122.1_3	chr12	2849233	2855828	LINC02371	+	lncRNA	chr12	2804930	2904186	ITFG2-AS1	-	lncRNA	6599	opposite	7765_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	5
13158	ENST00000671372.1_3	ENST00000604870.6_1	chr9	70968529	70972713	PGM5-AS1	-	lncRNA	chr9	70943223	71021261	PGM5	+	processed_transcript	4280	opposite	9544_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	3	11
13159	ENST00000671400.1_1	ENST00000310232.11_4	chr3	42760892	42764628	AC006059.4	+	lncRNA	chr3	42747247	42814745	CCDC13	-	protein_coding	3736	opposite	405_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	13	15
13161	ENST00000671400.1_1	ENST00000648550.1_3	chr3	42760892	42764628	AC006059.4	+	lncRNA	chr3	42747247	42845985	AC006059.2	-	protein_coding	3736	opposite	407_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	14	16
13180	ENST00000672188.1_4	ENST00000579964.6_2	chr18	24432009	24445716	AQP4	-	protein_coding	chr18	24235706	24514223	AQP4-AS1	+	lncRNA	13729	opposite	6325_ID	NA	NA	NA	NA	NA	NA	Intron	TRUE	FALSE	FALSE	FALSE	FALSE	FALSE	TRUE	FALSE	FALSE	1	4
